HHSEARCH alignment of GI: 254780523 and SCOP domain: d1io1a_

Alignment
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=99.95  E-value=2.6e-27  Score=166.72  Aligned_cols=90  Identities=7%  Similarity=0.019  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEE
Q ss_conf             999999999999999999999998888999999999999851378889889999999998656777777652-0024304
Q gi|254780523|r   59 KNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQYL  137 (357)
Q Consensus        59 ~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~-~~~g~~~  137 (357)
                      |..|+|+.+|...+.+||+++|++|+++.++|+|||||+||++|+++++.||+++..|+.+|+++|.+++|. +|+|.+|
T Consensus         2 i~gl~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~fng~~L   81 (395)
T d1io1a_           2 IKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKV   81 (395)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCC
T ss_conf             71388999989999999999999999999999999999998505789999999999999999999999997370288022


Q ss_pred             ECCCCCCCCCC
Q ss_conf             10566544321
Q gi|254780523|r  138 FSGINSSEKPL  148 (357)
Q Consensus       138 f~G~~~~~~p~  148 (357)
                      |.|......++
T Consensus        82 l~Gs~~~~~~~   92 (395)
T d1io1a_          82 LAQDNTLTIQV   92 (395)
T ss_dssp             TTSCEEEEEEC
T ss_pred             CCCCCCEEEEE
T ss_conf             35567258972


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: Phase 1 flagellin
superfamily: Phase 1 flagellin
family: Phase 1 flagellin
domain: Phase 1 flagellin
species: Salmonella typhimurium [TaxId: 90371]