Query gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 357
No_of_seqs 142 out of 3151
Neff 10.7
Searched_HMMs 13730
Date Wed Jun 1 10:12:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780523.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1io1a_ e.32.1.1 (A:) Phase 1 100.0 2.6E-27 1.9E-31 166.7 18.3 90 59-148 2-92 (395)
2 d2cbia1 a.246.1.1 (A:496-624) 11.0 29 0.0021 10.7 7.0 19 22-40 6-24 (129)
3 d2jdig1 c.49.2.1 (G:1-272) ATP 10.3 31 0.0023 10.6 5.5 49 284-332 218-266 (272)
4 d1dt9a3 d.91.1.1 (A:5-142) N-t 6.1 55 0.004 9.2 4.7 57 84-141 39-95 (138)
5 d1hywa_ d.186.1.1 (A:) Head-to 5.1 43 0.0031 9.8 -1.0 22 26-47 10-31 (58)
6 d2fgea1 d.185.1.1 (A:540-797) 4.0 93 0.0067 7.9 8.0 11 323-333 198-208 (258)
7 d2iy5a1 a.2.7.2 (A:15-84) Phen 3.9 95 0.0069 7.9 0.8 27 103-129 26-52 (70)
8 d1pzqa_ a.34.3.1 (A:) Erythron 3.8 99 0.0072 7.8 1.9 30 269-298 9-40 (60)
9 d1aqta1 a.2.10.1 (A:87-136) Ep 3.7 1E+02 0.0074 7.7 2.8 26 317-342 21-46 (50)
10 d1ucpa_ a.77.1.5 (A:) Apoptosi 3.3 1.2E+02 0.0086 7.3 1.1 35 323-357 51-85 (91)
No 1
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=99.95 E-value=2.6e-27 Score=166.72 Aligned_cols=90 Identities=7% Similarity=0.019 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEE
Q ss_conf 999999999999999999999998888999999999999851378889889999999998656777777652-0024304
Q gi|254780523|r 59 KNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQYL 137 (357)
Q Consensus 59 ~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~-~~~g~~~ 137 (357)
|..|+|+.+|...+.+||+++|++|+++.++|+|||||+||++|+++++.||+++..|+.+|+++|.+++|. +|+|.+|
T Consensus 2 i~gl~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~fng~~L 81 (395)
T d1io1a_ 2 IKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKV 81 (395)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCC
T ss_conf 71388999989999999999999999999999999999998505789999999999999999999999997370288022
Q ss_pred ECCCCCCCCCC
Q ss_conf 10566544321
Q gi|254780523|r 138 FSGINSSEKPL 148 (357)
Q Consensus 138 f~G~~~~~~p~ 148 (357)
|.|......++
T Consensus 82 l~Gs~~~~~~~ 92 (395)
T d1io1a_ 82 LAQDNTLTIQV 92 (395)
T ss_dssp TTSCEEEEEEC
T ss_pred CCCCCCEEEEE
T ss_conf 35567258972
No 2
>d2cbia1 a.246.1.1 (A:496-624) Hyaluronidase, post-catalytic domain 3 {Clostridium perfringens [TaxId: 1502]}
Probab=11.03 E-value=29 Score=10.71 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999972022046
Q gi|254780523|r 22 LNKDSVKLHEEMVTGQSSD 40 (357)
Q Consensus 22 ~~~~l~~~~~qlsTGk~i~ 40 (357)
++..+...-+++..|..+.
T Consensus 6 L~~~l~~f~~kl~~G~~~~ 24 (129)
T d2cbia1 6 LRAKMDELWNKLSSKEDAS 24 (129)
T ss_dssp HHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999987898349
No 3
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.33 E-value=31 Score=10.57 Aligned_cols=49 Identities=0% Similarity=-0.100 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9999998668999999999989999999998643332788899999999
Q gi|254780523|r 284 IIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLS 332 (357)
Q Consensus 284 i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~ 332 (357)
+....++.++|+.-++.+.++.+.....|+-...+..=+-+.++++++-
T Consensus 218 ~es~aSE~aaRm~AM~~At~Na~eli~~L~~~yNr~RQ~~IT~El~EIv 266 (272)
T d2jdig1 218 KESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEII 266 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9989999999999999999849999999999999999999999999999
No 4
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.06 E-value=55 Score=9.17 Aligned_cols=57 Identities=5% Similarity=0.142 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 8899999999999985137888988999999999865677777765200243041056
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~~g~~~f~G~ 141 (357)
.+|.++...+++-.-+|+| ..+...|.....-+...++.|-.+-.+=.+|--+|.|.
T Consensus 39 ~~I~~v~~~L~~E~g~AsN-IKsk~tR~~V~~Ai~s~~~rLk~y~k~P~NGLvif~G~ 95 (138)
T d1dt9a3 39 DQISRVAKMLADEFGTASN-IKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGT 95 (138)
T ss_dssp SCHHHHHHHHHHHHHHHTT-CCCTHHHHHHHHHHHHHHHHHTTCSSCCTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 8589999999999877631-22176789999999999999971788999808999867
No 5
>d1hywa_ d.186.1.1 (A:) Head-to-tail joining protein W, gpW {Bacteriophage lambda [TaxId: 10710]}
Probab=5.12 E-value=43 Score=9.77 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=14.1
Q ss_pred HHHHHHHHHCCCCCCCHHHCHH
Q ss_conf 9999999720220464212899
Q gi|254780523|r 26 SVKLHEEMVTGQSSDYGLQLGA 47 (357)
Q Consensus 26 l~~~~~qlsTGk~i~~~sddp~ 47 (357)
...+--+|-|||++.+..-|+.
T Consensus 10 aR~A~h~L~tGk~VvsvqKDGr 31 (58)
T d1hywa_ 10 ARAALHDLMTGKRVATVQKDGR 31 (58)
T ss_dssp HHHHHHHHTTSCCCEEEECSSC
T ss_pred HHHHHHHHHHCCEEEEEECCCC
T ss_conf 9999999884742478723892
No 6
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.01 E-value=93 Score=7.92 Aligned_cols=11 Identities=9% Similarity=0.114 Sum_probs=5.3
Q ss_pred CHHHHHHHHHH
Q ss_conf 88999999999
Q gi|254780523|r 323 EQHTAHAQLST 333 (357)
Q Consensus 323 D~ae~~t~l~~ 333 (357)
|+.+.+.+|..
T Consensus 198 ~~~~l~~~L~~ 208 (258)
T d2fgea1 198 DWEGISSSLEE 208 (258)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 49999999999
No 7
>d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS) {Thermus thermophilus [TaxId: 274]}
Probab=3.94 E-value=95 Score=7.86 Aligned_cols=27 Identities=4% Similarity=-0.145 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888988999999999865677777765
Q gi|254780523|r 103 GKTDNNKFPINAGMLRDSYESFVTFAN 129 (357)
Q Consensus 103 ~t~~~~d~~~~a~e~~~~~~~l~~~aN 129 (357)
+.+++++|..+.+.++++...+....+
T Consensus 26 ~~l~~eek~~~G~~lN~~K~~i~~~~~ 52 (70)
T d2iy5a1 26 SALPLEERRKRGQELNAIKAALEAALE 52 (70)
T ss_dssp TTGGGCCTTHHHHHHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 079989889963999999999999999
No 8
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=3.81 E-value=99 Score=7.77 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf 7777789999999999999--99866899999
Q gi|254780523|r 269 LTKKMLSTVQQGLSGIIEQ--RAVLGISEKNI 298 (357)
Q Consensus 269 ~~~~~~~~l~~a~~~i~~~--~a~lGa~~~~l 298 (357)
.+..-++.++.+++.+... .+++|+|...|
T Consensus 9 ~ig~rld~le~al~al~~~~gh~dvg~rle~l 40 (60)
T d1pzqa_ 9 DIGDRLDELEKALEALSAEDGHDDVGQRLESL 40 (60)
T ss_dssp TTHHHHHHHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHH
T ss_conf 62365889999998365210410799999999
No 9
>d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.74 E-value=1e+02 Score=7.71 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=18.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 33327888999999999999999999
Q gi|254780523|r 317 SKSIGVEQHTAHAQLSTLINKIEMSY 342 (357)
Q Consensus 317 s~l~daD~ae~~t~l~~~q~~~qas~ 342 (357)
..-.|.||+.+..+|......|.+..
T Consensus 21 ~~~~d~dy~~a~a~La~A~AqL~~i~ 46 (50)
T d1aqta1 21 SSHGDVDYAQASAELAKAIAQLRVIE 46 (50)
T ss_dssp TCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47640349999999999999999999
No 10
>d1ucpa_ a.77.1.5 (A:) Apoptosis-associated speck-like protein Asc {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.28 E-value=1.2e+02 Score=7.32 Aligned_cols=35 Identities=6% Similarity=-0.009 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf 88999999999999999999999997368505209
Q gi|254780523|r 323 EQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357 (357)
Q Consensus 323 D~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL 357 (357)
|++...++.--.+.++..+..++-+|.+.-|.+.|
T Consensus 51 dladlLv~~y~~~~A~~vt~~il~~m~~~dLae~l 85 (91)
T d1ucpa_ 51 DLTDKLVSFYLETYGAELTANVLRDMGLQEMAGQL 85 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 89999999878789999999999986979999999
Done!