BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780523|ref|YP_003064936.1| flagellar hook-associated
protein FlgL [Candidatus Liberibacter asiaticus str. psy62]
         (357 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040200|gb|ACT56996.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 357

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/357 (100%), Positives = 357/357 (100%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN
Sbjct: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
           HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS
Sbjct: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG
Sbjct: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
           QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM
Sbjct: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
           RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE
Sbjct: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL
Sbjct: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357


>gi|315122286|ref|YP_004062775.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495688|gb|ADR52287.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 356

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/357 (56%), Positives = 259/357 (72%), Gaps = 1/357 (0%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK TG+STSSI +RMNILTK+L+ +  KL  E +TGQ  DYGLQLG++VT I+E+EQEKN
Sbjct: 1   MKITGVSTSSILDRMNILTKDLSNNMEKLQHESITGQCWDYGLQLGSKVTDIIEFEQEKN 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
           H+ ERL  + LV  RLS  Q H+  +  + Q+ +  +  LL+G  D +       +L+DS
Sbjct: 61  HVTERLRGSELVKTRLSILQKHVEKIDDVYQNALQKMP-LLQGNEDKHAIAQVVSLLQDS 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           ++S + F N T+ G+YLFSGIN+SEKPL  YF KDSLAK+SFDQML+ FL+ENSK+L  G
Sbjct: 120 FQSTIEFFNTTEGGKYLFSGINTSEKPLQDYFAKDSLAKQSFDQMLKDFLKENSKNLPVG 179

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
           Q+L+VSSMN  QM DFI +LE+KFS+DEYW+ NWSNASD NIKY   +   ++VS NVN 
Sbjct: 180 QNLDVSSMNGHQMADFINKLEEKFSNDEYWSKNWSNASDQNIKYHSSNAGNLEVSVNVNS 239

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
             IR+ M  +VIG EFL+K+LT  +RNVL  KM S + QG+  +  Q A LG SEK I E
Sbjct: 240 DAIRNFMLFSVIGVEFLNKDLTTESRNVLNNKMASFIGQGVQDLNHQSAFLGFSEKRIEE 299

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           E  FLQ+K NIIDTYI KS+ V+Q+ A   L+ LINKI+MSYMIT KLQKLS+LNYL
Sbjct: 300 EIKFLQDKMNIIDTYILKSVSVDQYKASVGLTELINKIDMSYMITAKLQKLSLLNYL 356


>gi|163758034|ref|ZP_02165122.1| flagellar hook-associated protein L [Hoeflea phototrophica DFL-43]
 gi|162284323|gb|EDQ34606.1| flagellar hook-associated protein L [Hoeflea phototrophica DFL-43]
          Length = 350

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 195/364 (53%), Gaps = 21/364 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ IS  +I   M +       +  KL EE+VTG+ +D GL LGA+ ++ +   ++  
Sbjct: 1   MKTSFISNLAIQNSMRMTISRGQVEIQKLQEEVVTGRFADIGLSLGAKTSTSVSHHRDVQ 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD- 119
            +     SN+LVT+RLSTSQ  L++M    Q M+   ++   G  D  K  +   M RD 
Sbjct: 61  RLETIQDSNALVTQRLSTSQLSLAAMSDAAQQMLEAFIVA-NGTDDEPKLNV---MRRDV 116

Query: 120 --SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQG---FLEENS 174
             S E F +  N +  G+YLFSGIN+  KP++ Y    S AK +FD +  G   F +++ 
Sbjct: 117 EASLELFTSSINTSVNGEYLFSGINTDVKPVDDYLEPGSGAKAAFDTLFLGHFGFTQDDP 176

Query: 175 KSLLAGQHLEVSSMNAQQMTDFIKQ-LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            +         + +   QM +FI   LE +F     W  NWS+ASD NI  RI+  E +D
Sbjct: 177 AA---------AGITTAQMDNFIDNVLEPEFMGPN-WNTNWSSASDTNISSRIRTNEVVD 226

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
            SAN N  G+R     A+IG E +   ++   R  + +K +    Q ++GI  +R+ LG+
Sbjct: 227 SSANANGTGMRSFALAAIIGIELMDSPISSEVRASVNEKAIEYAGQAVTGIDNERSNLGV 286

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           SE  + +    ++ +  I+  +++   GV+ + A  ++ +L+ ++E SY +T ++Q+L++
Sbjct: 287 SENRVAKANEAIEAQVRIMKLHLNDIEGVDGYEASTRMQSLLTQVETSYTLTARIQQLNL 346

Query: 354 LNYL 357
           +NYL
Sbjct: 347 MNYL 350


>gi|222147591|ref|YP_002548548.1| flagellar hook-associated protein FlgL [Agrobacterium vitis S4]
 gi|221734579|gb|ACM35542.1| flagellar hook-associated protein [Agrobacterium vitis S4]
          Length = 355

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 191/362 (52%), Gaps = 12/362 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ IS+ +I   M +   +  K       E+ TG+ +D G +LGA+ +S ++  ++  
Sbjct: 1   MKTSSISSLTIQNAMRLTISDAQKQMSDAQTEVTTGKYADVGTELGAKTSSAVDLNRDSL 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NS+V+ RL  SQ  L ++      M   LV  L   TD+         ++ +
Sbjct: 61  RLQSLMDTNSIVSTRLDASQTALDTIASAATTMQSTLV-GLGTSTDSTTLDSAQKTMKSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKD-----SLAKKSFDQMLQGFLEENSK 175
            +SF+  AN +  G+YLFSGIN+  KP+  Y+  D     + AK++FD +  G+      
Sbjct: 120 MDSFIDAANTSVNGEYLFSGINTDVKPITDYYYIDDDGNETDAKQNFDNLFSGYFG---- 175

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
             ++     VS ++A QM DF++ + +   D   W +NWS A+D  +  RI   E I  S
Sbjct: 176 --MSPDDDGVSGISADQMDDFMENVLEPSFDGADWTDNWSAATDETMTSRISKNEVIQSS 233

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE 295
           ++ N  G R    V+VIG+E L+ N +   RN +  K +      +SGI ++R  LG+S+
Sbjct: 234 SSANSDGFRYTGLVSVIGSEMLNGNYSTETRNAMISKAIEYSGLAVSGINDERTQLGLSQ 293

Query: 296 KNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           + +      L ++ +II+  IS   GV+ + A  +L+ L + +E SY +T +LQKLS+++
Sbjct: 294 ERVTNANDSLTSQKDIIENQISDLTGVDAYEASTRLNNLQSLVETSYTLTARLQKLSLVD 353

Query: 356 YL 357
           YL
Sbjct: 354 YL 355


>gi|227820877|ref|YP_002824847.1| flagellar hook-associated protein FlgL [Sinorhizobium fredii
           NGR234]
 gi|227339876|gb|ACP24094.1| predicted flagellar hook-associated protein FlgL [Sinorhizobium
           fredii NGR234]
          Length = 350

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 192/358 (53%), Gaps = 9/358 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ +S  ++   M +  ++  ++ +KL  E+ TG+ +D GL+LG+     +  ++E  
Sbjct: 1   MKTSFVSNLAVQNAMRLTIQQGQEELLKLQTEVSTGRHADVGLELGSSTARSVNLQRELA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NS+VT+RL++SQ  L +M +  + +   LV   +G    ++  +    +  +
Sbjct: 61  RLETLVDTNSVVTQRLASSQQALGTMAEAAEQVRNTLVTF-KGNDSVDQLSVQKTEIESA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
              F   AN +  G++LF+GIN+  KP   Y    S AK +FD  L  ++  N  +    
Sbjct: 120 MSLFTASANTSFNGEFLFAGINTDVKPFEDYAASGSAAKTTFDDALATYMSANGIA---- 175

Query: 181 QHLEVSSMNAQQMTDFIKQ-LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
               +S     QM DFI   LE  ++DD  WA +WS AS  N+  RI  +E +  S N  
Sbjct: 176 ---SMSDFTEAQMEDFITNTLEPLYTDDAQWAGDWSAASSQNMTSRISTSEVVQSSTNAT 232

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
             G R     +VI +E + +++    R  + +  L  V+Q ++G+  +R+ LGISE  + 
Sbjct: 233 TSGFRMFALASVISSELMDEDIGSEVRAYIGEASLGYVEQAITGLTAERSTLGISEARVE 292

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    L+ +  +I+T+I+   GV+ + A  +++TL+ ++E SY +T ++Q+LS++++L
Sbjct: 293 KANTSLEVQIKLINTHITDLEGVDTYDASTRMNTLLTQMETSYTLTGRIQQLSLIDFL 350


>gi|307318931|ref|ZP_07598362.1| flagellar hook-associated 3 family protein [Sinorhizobium meliloti
           AK83]
 gi|306895345|gb|EFN26100.1| flagellar hook-associated 3 family protein [Sinorhizobium meliloti
           AK83]
          Length = 347

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 195/358 (54%), Gaps = 12/358 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ +S  ++   M +  ++   + +KL  E+ TG+ +D GL LG+     +  ++E  
Sbjct: 1   MKTSFVSNLAVQNAMRLTIQQGQAELLKLQTEVTTGRHADVGLALGSSAARSVSLQRELA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NS+VT+RL+ SQ+ LS+M +  Q +   LV   +G    ++  I    ++ +
Sbjct: 61  RLGTLVDTNSVVTQRLAASQSALSAMAEAAQQVRNTLVTF-KGNDAADQLAIQKTEIQSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             +F + AN++  G++LF+GIN+  +P + Y   ++ AK +FD  L  ++  N  +    
Sbjct: 120 MSAFSSAANLSFNGEFLFAGINTDVRPFDDY---NAAAKSTFDTALATYMSANGIA---- 172

Query: 181 QHLEVSSMNAQQMTDFIKQ-LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
               +S     +M DFI   LE  ++ D  WA +WS AS  N+  RI  TE +  S N  
Sbjct: 173 ---SMSDFTKAEMEDFITNTLEPLYASDAQWAADWSKASSQNMTSRISTTEVVQSSTNAT 229

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
             G R     +VI  E + +N++   R  + +  LS V+Q  + I  +R+ LGISE  + 
Sbjct: 230 TEGFRKFALASVIALELMDENVSSEVRAYIGEAALSYVEQANTQITAERSTLGISEARVK 289

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    LQ +  +I+T+I+   GV+ + A  +++TL+ ++E SY +T ++Q+LS++++L
Sbjct: 290 KANTSLQAQIKLINTHITDLEGVDTYEASTRMNTLLTQVETSYTLTARIQRLSLIDFL 347


>gi|10998530|gb|AAG25960.1|AF300968_2 FlgL [Sinorhizobium meliloti]
          Length = 345

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 192/357 (53%), Gaps = 12/357 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ +S  ++   M +  ++   + +KL  E+ TG+ +D GL LG+     +  ++E  
Sbjct: 1   MKTSFVSNLAVQNAMRLTIQQGQAELLKLQTEVTTGRHADVGLALGSSAARSVSLQRELA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NS+VT+RL+ SQ+ LS+M +  Q +   LV   +G    ++  I    ++ +
Sbjct: 61  RLGTLVDTNSVVTQRLAASQSALSAMAEAAQQVRNTLVTF-KGNDAADQLAIQKTEIQSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             +F + AN++  G++LF+GIN+  +PL  Y   ++ AK +FD  L  F+  N  +    
Sbjct: 120 MSAFSSAANLSFNGEFLFAGINTDVRPLEDY---NAAAKSTFDTALATFMSANGIA---- 172

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               +S     QM DFI    +   D E WA +WS AS  N+  RI  TE +  S N   
Sbjct: 173 ---SMSDFTKAQMEDFITNTLEPLYDTE-WAADWSKASSQNMTSRISTTEVVQSSTNATT 228

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R     +VI  E + +N++   R  + +  L  V+Q  + I  +R+ LGISE  + +
Sbjct: 229 EGFRKFALASVIALELMDENVSSEVRAYIGEAALGYVEQANTQITAERSTLGISEARVKK 288

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               LQ +  +I+T+I+   GV+ + A  +++TL+ ++E SY +T ++Q+LS++++L
Sbjct: 289 ANTSLQAQIKLINTHITDLEGVDTYEASTRMNTLLTQVETSYTLTARIQRLSLIDFL 345


>gi|15964434|ref|NP_384787.1| flagellar hook-associated protein FlgL [Sinorhizobium meliloti
           1021]
 gi|307311576|ref|ZP_07591217.1| flagellar hook-associated 3 family protein [Sinorhizobium meliloti
           BL225C]
 gi|15073611|emb|CAC45253.1| Putative flagellar hook-associated protein [Sinorhizobium meliloti
           1021]
 gi|306899593|gb|EFN30222.1| flagellar hook-associated 3 family protein [Sinorhizobium meliloti
           BL225C]
          Length = 345

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 192/357 (53%), Gaps = 12/357 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ +S  ++   M +  ++   + +KL  E+ TG+ +D GL LG+     +  ++E  
Sbjct: 1   MKTSFVSNLAVQNAMRLTIQQGQAELLKLQTEVTTGRHADVGLALGSSAARSVSLQRELA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NS+VT+RL+ SQ+ LS+M +  Q +   LV   +G    ++  I    ++ +
Sbjct: 61  RLGTLVDTNSVVTQRLAASQSALSAMAEAAQQVRNTLVTF-KGNDAADQLAIQKTEIQSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             +F + AN++  G++LF+GIN+  +PL  Y   ++ AK +FD  L  ++  N  +    
Sbjct: 120 MSAFSSAANLSFNGEFLFAGINTDVRPLEDY---NAAAKSTFDTALATYMSANGIT---- 172

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               +S     QM DFI    +   D E WA +WS AS  N+  RI  TE +  S N   
Sbjct: 173 ---SMSDFTKAQMEDFITNTLEPLYDTE-WAADWSKASSQNMTSRISTTEVVQSSTNATT 228

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R     +VI  E + +N++   R  + +  L  V+Q  + I  +R+ LGISE  + +
Sbjct: 229 EGFRKFALASVIALELMDENVSSEVRAYIGEAALGYVEQANTQITAERSTLGISEARVKK 288

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               LQ +  +I+T+I+   GV+ + A  +++TL+ ++E SY +T ++Q+LS++++L
Sbjct: 289 ANTSLQAQIKLINTHITDLEGVDTYEASTRMNTLLTQVETSYTLTARIQRLSLIDFL 345


>gi|150395505|ref|YP_001325972.1| flagellar hook-associated protein FlgL [Sinorhizobium medicae
           WSM419]
 gi|150027020|gb|ABR59137.1| flagellar hook-associated 3 family protein [Sinorhizobium medicae
           WSM419]
          Length = 350

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 195/358 (54%), Gaps = 9/358 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ +S  ++   M +  ++   + +KL  E+ TG+ +D GL LG+     +  ++E  
Sbjct: 1   MKTSFVSNLAVQNAMRLTIQQGQAELLKLQTEVTTGRHADVGLALGSSTARSVSLQRELA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NS+VT+RL+ SQ+ L++M +  Q +   LV   +G    ++  I    ++ +
Sbjct: 61  RLGTLVDTNSVVTQRLAASQSALAAMAEAAQQVRNTLVTF-KGNDAADQLAIQNTEIQSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             +F + AN++  G++LF+GIN+  +P N Y    S AK +FD  L  ++  N  +    
Sbjct: 120 ISAFSSAANLSFNGEFLFAGINTDVRPFNDYSAAGSTAKTTFDNALATYMSANGIA---- 175

Query: 181 QHLEVSSMNAQQMTDFIKQ-LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
               +S     QM DFI   LE  ++ D  WA +WS+AS  N+  RI  TE +  SAN  
Sbjct: 176 ---SMSDFTKAQMEDFITNTLEPLYASDAQWAADWSDASSQNMTSRISTTEVVQSSANAT 232

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
             G R     +VI  E + +N++   R  + +  L  V+Q  + I  +R+ LGISE  + 
Sbjct: 233 TEGFRKFALASVIALELMDENVSSEVRAYIGEAALGYVEQANTQITAERSTLGISEARVK 292

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    LQ +  +I T+I+   GV+ + A  +++TL+ ++E SY +T+++Q+LS++++L
Sbjct: 293 KANTSLQAQIKLIKTHITDLEGVDTYEASTRMNTLLTQVETSYTLTSRIQRLSLIDFL 350


>gi|110632638|ref|YP_672846.1| flagellar hook-associated protein FlgL [Mesorhizobium sp. BNC1]
 gi|110283622|gb|ABG61681.1| flagellar hook-associated protein 3 (HAP3) flgL [Chelativorans sp.
           BNC1]
          Length = 349

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 180/357 (50%), Gaps = 9/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK + +STS+I + +      +  D VK  +E+ +G+ +D G  LGAR       ++E +
Sbjct: 1   MKVSFVSTSAISQTLRYQMMRMQADLVKNQKELDSGRLADPGATLGARAGFSFSMDREIS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NSL   RL+ +Q +L+ +  I Q+++  L   L G  D +   + +G  R +
Sbjct: 61  RLENVIDANSLAANRLTATQNNLTQLTDISQELLATLSAALSGVNDTSI--VKSGATR-A 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            ES  +  N    G+YLF+GIN+  KP+N +    S  K  FD     F         A 
Sbjct: 118 LESMTSVLNSNFNGEYLFAGINTDVKPINDFTDPASPNKAQFDAQFLAFFG------FAQ 171

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                S + A Q+ DF+  + +       W++ WS ASD  I  RI   E  + S   N 
Sbjct: 172 NDPAASGITASQIEDFLDTVIEPAFMGTGWSDAWSGASDEKITSRIAANETAETSTTANG 231

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G+R +   + + +EFL   L D AR  L ++  S V + +  I   +A +G++E  + +
Sbjct: 232 AGMRKLAMASAVLSEFLEIPLGDEARQTLYQRTTSLVGEAIPAIASVQAEVGLAETRLQD 291

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               + ++ ++  T+I    GV+ + A  +++ ++ +IE+SY +T+++Q+LS+L YL
Sbjct: 292 ATDRISSQIDLFKTFIRDLEGVDPYEASTRVNEILTQIELSYALTSRIQQLSLLRYL 348


>gi|15887921|ref|NP_353602.1| flagellar hook-associated protein FlgL [Agrobacterium tumefaciens
           str. C58]
 gi|15155517|gb|AAK86387.1| flagellar hook-associated protein [Agrobacterium tumefaciens str.
           C58]
          Length = 367

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 195/376 (51%), Gaps = 28/376 (7%)

Query: 1   MKTTGISTSSIFERM--NILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQE 58
           MKT+ IS+ ++   M   IL  +L  +   L+ E+ TG+ +D GL LGA     L+  ++
Sbjct: 1   MKTSFISSLAMQNSMRSTILKAQL--EMTNLNTELTTGKHADLGLTLGANTARSLDLNRD 58

Query: 59  KNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLR 118
            + I+  +  NS+ T+RL +SQ  L  M K  Q++    V++    ++       +  + 
Sbjct: 59  IDRISSLVSVNSIATQRLKSSQTALDGMAKAAQEIQK--VLVPNTSSEAPTLTTVSQTIS 116

Query: 119 DSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
           +++ +F +FAN    G++LFSGIN+  KP++ YF   S  K +++  L  F+   +  + 
Sbjct: 117 NAFNNFTSFANTAVNGEFLFSGINTDVKPVDDYFADGSPLKAAYETELNAFMAAQTPPVG 176

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDD-----------------EYWANNWSNASDHN 221
                + +S++  Q+  F+  +E  F                    ++W    S AS+ N
Sbjct: 177 -----DFASLSKTQVEGFMTHIEGVFKGTTTVTNPPHTSLTAGQNYDFWTTFGSKASNTN 231

Query: 222 IKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL 281
           +  RI   E ++ S+N N +G+R     A+    FL   +  G R ++  K ++ +   +
Sbjct: 232 MTSRISQNEIVETSSNSNSQGMRYFALTAMTSMTFLDPKVDSGIREMVAMKSVTNIGTAI 291

Query: 282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
           +G+ +Q++ LG+SE  +++    L+ +  II+T++    G++ + A  +L  L  +IE++
Sbjct: 292 NGLNQQQSQLGLSESRVSKANDSLEAQKKIIETHLLDIEGIDTYEAKTRLDLLQQQIEIA 351

Query: 342 YMITTKLQKLSILNYL 357
           Y +T++LQK+S++NYL
Sbjct: 352 YSLTSRLQKMSLVNYL 367


>gi|86356332|ref|YP_468224.1| flagellar hook-associated protein FlgL [Rhizobium etli CFN 42]
 gi|86280434|gb|ABC89497.1| flagellar hook-assosiated protein [Rhizobium etli CFN 42]
          Length = 350

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 177/361 (49%), Gaps = 15/361 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK++ IS+S+I   M +  ++      K   E  TG  +D G+ LG      +++ +E +
Sbjct: 1   MKSSFISSSAIQNAMRLTIRQAQNQMTKATMEATTGVYADIGVSLGGNAARSVDFTRETD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I     SNSLVT R+ +SQ  LS M+ +   +V  L  L +G  D     +       +
Sbjct: 61  RIDSIKSSNSLVTARMESSQLGLSKMKDVGDGLVSKLTAL-QGSHDPGSITVAIQSATSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLA-KKSFDQMLQGFLEENSKSLLA 179
             + +  AN    G+YLFSGIN+  +PL    T  S A   + +    G +   +     
Sbjct: 120 LSTMMDTANTVVNGEYLFSGINTDVQPLTDKTTATSAAIVTALNTYAAGLVPPKA----- 174

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANN---WSNASDHNIKYRIKDTEGIDVSA 236
                VS +   +M+ FI    +    +  W N    WS AS  N+  RI ++E I+ S 
Sbjct: 175 -----VSDLTGAEMSTFITTTVEPMFSEASWTNTTTGWSQASSQNMTSRISNSEVIESST 229

Query: 237 NVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEK 296
           N N  G+R +   +V+ T  L +NL+  A   ++K+ +S   +  SG++ Q + LG+S++
Sbjct: 230 NANSEGMRYMALASVMTTALLGQNLSTDAMTTVSKQAISYTAKATSGLVTQASQLGLSQE 289

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
            + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +K+Q+LS++NY
Sbjct: 290 RVKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQLSLVNY 349

Query: 357 L 357
           L
Sbjct: 350 L 350


>gi|325291964|ref|YP_004277828.1| flagellar hook-associated protein FlgL [Agrobacterium sp. H13-3]
 gi|325059817|gb|ADY63508.1| flagellar hook-associated protein FlgL [Agrobacterium sp. H13-3]
          Length = 367

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 192/376 (51%), Gaps = 28/376 (7%)

Query: 1   MKTTGISTSSIFERM--NILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQE 58
           MKT+ IS+ ++   M   IL  +L  +   L+ E+ TG+ +D G+ LGA     L+  ++
Sbjct: 1   MKTSFISSLAMQNSMRSTILKAQL--EMTNLNTELTTGKHADLGVTLGANTARSLDLNRD 58

Query: 59  KNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLR 118
            + ++  +  NS+ T+RL +SQA L  M K  Q++    V++    +        A  + 
Sbjct: 59  VDRLSSLVSVNSIATQRLKSSQAALDGMAKAAQEIQK--VLVPNTSSAAPTLATVAKTIS 116

Query: 119 DSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
           +++ +F  FAN    G++LFSGIN+  KP++ YF + S  K +++  L  F+   + ++ 
Sbjct: 117 NAFNTFTGFANTAVSGEFLFSGINTDVKPIDDYFAEGSTLKAAYEVELNAFMAAQTPAVG 176

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDD-----------------EYWANNWSNASDHN 221
                 ++ ++  Q   F+ ++E  F+                   ++W    S ASD N
Sbjct: 177 -----NIADLSKDQAAAFMTRIEGVFNGTTPVTNPPHSDLTAGQNYDFWTTYGSKASDTN 231

Query: 222 IKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL 281
           +  RI   E ++ S N N +G+R     A+    FL   +    R ++  + ++ +   +
Sbjct: 232 MTSRISQNEVVETSTNSNSQGMRYFAMTAMTAMTFLDDKVPSDVRELVATRSVTNIGTVI 291

Query: 282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
           SG+ +Q++ LG+SE  +++    L  +  II+T++    G++ +    +L  L  +IE++
Sbjct: 292 SGLNQQQSQLGLSESRVSKANDSLAAQKKIIETHLLDIEGIDTYEVKTRLDLLQQQIEIA 351

Query: 342 YMITTKLQKLSILNYL 357
           Y +T++LQK+S++NYL
Sbjct: 352 YSLTSRLQKMSLVNYL 367


>gi|170744545|ref|YP_001773200.1| flagellar hook-associated protein FlgL [Methylobacterium sp. 4-46]
 gi|168198819|gb|ACA20766.1| flagellar hook-associated 3 family protein [Methylobacterium sp.
           4-46]
          Length = 344

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 171/358 (47%), Gaps = 15/358 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+T+ IST S++      T  L  +S K  +E+ +G+ +D GL+LG+RV+  L    +++
Sbjct: 1   MQTSYISTQSLWNAPRSATARLQAESAKATQEVASGRYADVGLELGSRVSVSLALRGQQD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A     N L   RL  +QA L  +Q    D +  L+    G + + K    + +    
Sbjct: 61  QLAALKQDNGLTALRLDQTQATLKQLQAAADDTLKQLL----GASIDKKVSTISTLAATQ 116

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYF-TKDSLAKKSFDQMLQGFLEENSKSLLA 179
             +  +  N    GQYLF+G+N+ + PL  Y  +  S AK + DQ  Q            
Sbjct: 117 LAALTSALNGAANGQYLFAGLNTDKAPLTAYAGSPTSPAKAAVDQAFQAAFGSA------ 170

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
               + +++   QMT F+     +  D+ +W   WS+AS   +  RI   E    S + N
Sbjct: 171 ----DPATITPAQMTAFLNGPLAQLFDEAHWTATWSSASSDALTSRIAPDETARTSVSAN 226

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
              IR +    V+ +   +  ++   + V+  K+ S + QG  G++  +A LG  +  I 
Sbjct: 227 AEPIRSLAMAYVLASALKADTMSAATQTVIADKITSLLSQGSQGLVGLQADLGTVQARIK 286

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    +  + ++I + I    GV+   A  +L  L  +I+MSY +T++L++LS++NYL
Sbjct: 287 DANTRMDAQKSLIASRIDDLEGVDPAEAKTRLDRLNAQIQMSYSLTSQLRQLSLVNYL 344


>gi|190890384|ref|YP_001976926.1| flagellar hook-assosiated protein [Rhizobium etli CIAT 652]
 gi|190695663|gb|ACE89748.1| flagellar hook-assosiated protein [Rhizobium etli CIAT 652]
 gi|327193061|gb|EGE59973.1| flagellar hook-assosiated protein [Rhizobium etli CNPAF512]
          Length = 350

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 173/361 (47%), Gaps = 15/361 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK++ IS+++I   M +  ++      K   E  TG  +D G+ LG      +++ +E +
Sbjct: 1   MKSSFISSTAIQSAMRLTIRQAQNQMTKATMEATTGVYADIGVSLGGNAARSVDFTRETD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I     SNSLV+ R+ +SQ  LS M+ +   +V  L  L +G  D     +       +
Sbjct: 61  RIDSIKSSNSLVSARMESSQLGLSKMKDVGDGLVSKLTAL-QGSHDPGSITVAIQSATSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLA-KKSFDQMLQGFLEENSKSLLA 179
             + +  AN    G+YLFSGIN+  +PL    T  S A   + +    G     + S L 
Sbjct: 120 LSTMMDTANTMVNGEYLFSGINTDVQPLTDKTTATSAAIVTALNSYAAGLAPPKAVSDLT 179

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDVSA 236
           G  +E           FI    +       W N    WS AS  N+  RI ++E I+ S 
Sbjct: 180 GTEMET----------FITTTVEPMFSQANWTNAATGWSQASSQNMTSRISNSEVIESST 229

Query: 237 NVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEK 296
           N N  G+R     +V+ +  L +NL+  A   ++K+ +S   +  SG++ Q + LG+S++
Sbjct: 230 NANSEGMRYFALASVMTSALLGQNLSTDAMTTVSKQAISYTAKATSGLVTQASQLGLSQE 289

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
            + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +K+Q+LS++NY
Sbjct: 290 RVKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQLSLVNY 349

Query: 357 L 357
           L
Sbjct: 350 L 350


>gi|209547948|ref|YP_002279865.1| flagellar hook-associated protein FlgL [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533704|gb|ACI53639.1| flagellar hook-associated 3 family protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 350

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 174/361 (48%), Gaps = 15/361 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK++ IS+S+I   M +  ++      K   E  TG  +D G+ LG      +++ +E +
Sbjct: 1   MKSSFISSSAIQNAMRLTIRQGQNQMTKATMEATTGVYADIGVSLGGNAARSVDFTRETD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I     SNSLV  R+ +SQ  LS M+ +   +V  L  L +G  D     +       +
Sbjct: 61  RIDSIKASNSLVAARMESSQLGLSKMKDVGDGLVSKLTAL-QGSHDPGSVTVAIQSATSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLA-KKSFDQMLQGFLEENSKSLLA 179
             + +  AN    G+YLFSGIN+  +PL    T  S A   + +    G     + S L 
Sbjct: 120 LSTMMDTANTMVNGEYLFSGINTDVQPLTDKTTATSAAIVTALNSYAAGLAPPKAVSALT 179

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDVSA 236
           G  +E           FI    +       W N    WS AS  N+  RI ++E I+ S 
Sbjct: 180 GAEMET----------FITGTVEPMFSQANWTNATTGWSQASSQNMTSRISNSEVIESST 229

Query: 237 NVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEK 296
           N N  G+R +   +V+ +  L +NL+  A + ++K+ ++   +  SG++ Q + LG+S++
Sbjct: 230 NANSEGMRYMALASVMTSALLGQNLSSDAMSTVSKQAITYTTKATSGLVTQASQLGLSQE 289

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
            + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +K+Q+LS++NY
Sbjct: 290 RVKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQLSLVNY 349

Query: 357 L 357
           L
Sbjct: 350 L 350


>gi|116250502|ref|YP_766340.1| flagellar hook-associated protein FlgL [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255150|emb|CAK06224.1| putative flagellar hook-associated protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 348

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 175/360 (48%), Gaps = 15/360 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK++ IS+S+I   M +  ++      K   E  TG  +D G+ LG      +++ +E +
Sbjct: 1   MKSSFISSSAIQNAMRLTIRQAQNQMTKATMEATTGVYADIGVSLGGNAARSVDFSREVD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            IA    SNSLVT R+ +SQ  LS M+ +   +V  L  L +G  D     +       +
Sbjct: 61  RIASIKSSNSLVTARMESSQLGLSKMKDVGDGLVSKLTAL-QGSHDPGSITVAIQSATSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             + +  AN    G+YLFSGIN+  +PL      D  A  S D      +     +   G
Sbjct: 120 LSTMMDTANTMVNGEYLFSGINTDVQPLT-----DKTAATSAD------IVTALNTYATG 168

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDVSAN 237
               VS +   +M  FI    +    +  W +    WS AS  N+  RI ++E I+ S N
Sbjct: 169 LGKSVSDLTGTEMETFITTTVEPMFTEAAWTDPTTGWSQASSQNMTSRISNSEVIESSTN 228

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N  G+R     +V+ +  L + L+  A + ++K+ +S   +  SG++ Q + LG+S++ 
Sbjct: 229 ANSEGMRYFALASVMTSALLGQGLSSDAMSTVSKQAISYTTKATSGLVTQASQLGLSQER 288

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +K+Q+LS++NYL
Sbjct: 289 VKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQLSLVNYL 348


>gi|241203126|ref|YP_002974222.1| flagellar hook-associated protein FlgL [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857016|gb|ACS54683.1| flagellar hook-associated 3 family protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 350

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 179/361 (49%), Gaps = 15/361 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK++ IS+S+I   M +  ++      K   E  TG  +D G+ LG      +++ +E +
Sbjct: 1   MKSSFISSSAIQNAMRLTIRQAQNQMTKATMEATTGVYADIGVSLGGNAARSVDFSREVD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I     SNSLVT R+ +SQ  LS M+ +   +V  L  L +G  D     +       +
Sbjct: 61  RIDSIKSSNSLVTARMESSQLGLSKMKDVGDGLVSKLTAL-QGSHDPGSITVAIQSATSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             + +  AN    G+YLFSGIN+  +PL    T  S A            E N+ +    
Sbjct: 120 LSTMMDTANTMVNGEYLFSGINTDVQPLTDKTTATSAAI---------VTELNTYAAALV 170

Query: 181 QHLEVSSMNAQQMTDFIK-QLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDVSA 236
               VS++   +M+ FI  ++E  FS    W +    WS AS  N+  RI ++E I+ S 
Sbjct: 171 PPKAVSALTGAEMSTFITTKVEPMFSQ-AAWTDPTTGWSQASSQNMTSRISNSEVIESST 229

Query: 237 NVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEK 296
           N N  G+R     +V+ +  L + L+  A + ++K+ +S   +  SG++ Q + LG+S++
Sbjct: 230 NANSEGMRYFALASVMTSALLGQGLSSDAMSTVSKQAISYTTKATSGLVTQASQLGLSQE 289

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
            + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +K+Q+LS++NY
Sbjct: 290 RVKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQLSLVNY 349

Query: 357 L 357
           L
Sbjct: 350 L 350


>gi|319781663|ref|YP_004141139.1| flagellar hook-associated protein FlgL [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167551|gb|ADV11089.1| flagellar hook-associated protein FlgL [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 347

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 177/358 (49%), Gaps = 17/358 (4%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T +S+++I   M      +  + VK  +E  TG+ +D GL LG R T  + ++++ + + 
Sbjct: 2   TSVSSAAISNAMRSQQMRMQAELVKATKESSTGRVADVGLALGGRTTQAVTFQRDLDRLN 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             + SN LV  RLS++Q  L  +    Q     L  L    + ++   +     + + + 
Sbjct: 62  VIIDSNGLVGARLSSTQTSLGQLSTAAQTF---LSALTTASSSDSSNSLTQSSGKATIQQ 118

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKSLLAG 180
             +  N +  G+YLF+G N+  KP+N +    S AK +FD       GF +++  +    
Sbjct: 119 LTSILNTSVNGEYLFAGTNTDVKPINDFTAAGSPAKAAFDAAFVANFGFTQDDPLA---- 174

Query: 181 QHLEVSSMNAQQMTDFIK-QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                + + A QM DFI   +  +F+    W  NWSNA+D  I  RI   E    S + N
Sbjct: 175 -----ADITAAQMDDFITNDVAPQFTG-AGWQGNWSNATDQQIVSRIALNETTPTSTSAN 228

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
             GI+ +   A + +  +S N++  A+N +  +  + V + LSGI + ++  GI +K ++
Sbjct: 229 SAGIQKLAMAAAMVSSLMSSNISQAAKNTVVSRSTTLVGEALSGIGQLQSETGIVQKRVS 288

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    ++ + ++ + +I     V+   A  +++ L   IE S+ +T +LQ+LS+LNYL
Sbjct: 289 DANDRMKTQVDLFERHILDLEAVDPAEAATRVADLTQHIETSFALTARLQQLSLLNYL 346


>gi|218462423|ref|ZP_03502514.1| flagellar hook-associated protein FlgL [Rhizobium etli Kim 5]
          Length = 332

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 162/333 (48%), Gaps = 13/333 (3%)

Query: 28  KLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQ 87
           K   E  TG  +D G+ LG      +++ +E + I     SNSLV+ R+ +SQ  LS M+
Sbjct: 10  KATMEATTGVYADIGVSLGGNAARSVDFTRETDRIDSIKASNSLVSARMESSQLGLSKMK 69

Query: 88  KIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKP 147
            +   +V  L  L +G  D     +       +  + +  AN    G+YLFSGIN+  +P
Sbjct: 70  DVGDGLVSKLTAL-QGSKDPGSITVAIQSATSALSTMMDTANTMVNGEYLFSGINTDVQP 128

Query: 148 LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDD 207
           L    T  S A       +   L   + +L+  +   VS +   +M  FI    +     
Sbjct: 129 LTDKTTATSAA-------IVTALNSYAAALVPPKA--VSDLTGAEMQTFITTTVEPMFSQ 179

Query: 208 EYWAN---NWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDG 264
             W N    WS AS  N+  RI ++E I+ S N N  G+R     +V+ +  L +NL+  
Sbjct: 180 ANWTNAATGWSQASSQNMTSRISNSEVIESSTNANSEGMRYFALASVMTSALLGQNLSTD 239

Query: 265 ARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQ 324
           A   ++K+ +S   +  SG++ Q + LG+S++ + +    L  ++NII   +    GV+ 
Sbjct: 240 AMTTVSKQAISYTAKATSGLVTQASQLGLSQERVKKSNDALDAQSNIIKNKLVDLQGVDP 299

Query: 325 HTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + A   + TL  ++E +Y I +K+Q+LS++NYL
Sbjct: 300 YEASTLVKTLETQLETAYTIVSKIQQLSLVNYL 332


>gi|260466601|ref|ZP_05812789.1| flagellar hook-associated 3 family protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259029607|gb|EEW30895.1| flagellar hook-associated 3 family protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 347

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 170/355 (47%), Gaps = 11/355 (3%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T +S++++          +  D VK  +E  TG+ +D GL LG R    + + ++ + + 
Sbjct: 2   TSVSSAALSNAARYQQMRMQADLVKATKESSTGRIADVGLALGGRTAQSVTFSRDLDRLN 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             + SN LV  RLS++Q  L  +  + Q  +  L     G   +N   +     + + + 
Sbjct: 62  VIVDSNGLVAARLSSTQTSLGQLSSVAQTFLSSLTTASSG---DNSDSLTQSTGQTTIQQ 118

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             +  N +  G+YLF+G N+  KP+N +    S AK +FD              LA    
Sbjct: 119 LASILNTSVNGEYLFAGTNTDVKPINDFTAPGSPAKAAFDASFVANFGFPPNDPLA---- 174

Query: 184 EVSSMNAQQMTDFIK-QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242
             +++ A QM DFI   +E +F     W  N SNA+D  I  RI   E  + S   N  G
Sbjct: 175 --ANITAAQMDDFITNDVEPQFLG-SGWQTNMSNATDQQIVSRIALNETTETSTGANSDG 231

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
           I+ +   A + +  +S N++  A++ +  +    V + LSGI + ++  GI +K +++  
Sbjct: 232 IKKLAMAAAMVSSLMSTNISQAAKDTIVSRSQILVGEALSGIAQVQSETGIVQKRVSDAS 291

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++ + ++ + +I     V+   A  +++ L   IE S+ +T +LQ+LS+LNYL
Sbjct: 292 DRMKTQVDLFERHILDLEAVDPAEAATRVADLTQHIETSFALTARLQQLSLLNYL 346


>gi|13472594|ref|NP_104161.1| flagellar hook-associated protein FlgL [Mesorhizobium loti
           MAFF303099]
 gi|14023340|dbj|BAB49947.1| flagellar hook-associated protein 3 (HAP3); FlgL [Mesorhizobium
           loti MAFF303099]
          Length = 347

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 177/358 (49%), Gaps = 17/358 (4%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T +S++++   M      +  D VK  +E  TG+ +D GL LG R    + + ++ + + 
Sbjct: 2   TSVSSAALTNAMRYQQMRMQADLVKATKESSTGRVADVGLALGGRTAQSVTFSRDLDRLN 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             + SN LVT RL+++Q  L  +  + Q  +  L     G  ++N    + G+   + + 
Sbjct: 62  VIVDSNGLVTARLASTQTSLGQLSGVAQTFLSALTTASSGD-NSNSLTQSTGLT--TLQQ 118

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKSLLAG 180
             +  N +  G+YLF+G N+  KP+N +    S AK +FD       GF   +  +    
Sbjct: 119 LTSILNTSVNGEYLFAGTNTDVKPINDFTAAGSAAKAAFDASFVAKFGFTPTDPAA---- 174

Query: 181 QHLEVSSMNAQQMTDFIK-QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                +++ A QM DFI   +  +F     W  N SNA+D  I  RI   E  + S + N
Sbjct: 175 -----ANITAAQMDDFITNDVAPQFLG-AGWQTNMSNATDQQIVSRIALNETTETSTSAN 228

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
             GIR +   A + +  +S N++  A++ +     + V + LSGI + ++  GI +K ++
Sbjct: 229 SDGIRKLAMAAAMVSSLMSSNISRAAKDSIVTHSQTLVGEALSGIAQVQSETGIVQKRVS 288

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    ++ + ++ + +I     V+  TA  +++ L   IE S+ +T +LQ+LS+LNYL
Sbjct: 289 DASDRMKTQIDLFERHILDLEAVDPATAATRVADLTQHIETSFALTARLQQLSLLNYL 346


>gi|300024586|ref|YP_003757197.1| flagellar hook-associated 3 family protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526407|gb|ADJ24876.1| flagellar hook-associated 3 family protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 351

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 179/369 (48%), Gaps = 32/369 (8%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           +  T ISTS++          +    V + +E+ TG+ +D GL LGA+    +   Q+ +
Sbjct: 2   LTPTFISTSALSSETKASIARIQHRLVDVQKELATGRHADVGLTLGAQTGVAVSLRQDIS 61

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKF--PINAGMLR 118
            I     +NSLV  R+  SQA L+++    Q  +  L       T +       NA M  
Sbjct: 62  QIQSIKDTNSLVLTRMQASQAALNTLATTSQSFLNALTPAQSTSTMSGTIVQQANAAM-- 119

Query: 119 DSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
              +S     N + +GQYLFSGINS  KPL+ YF     A      +   F+   +K  +
Sbjct: 120 ---QSIQDQLNSSLDGQYLFSGINSDVKPLDDYFANPPAASAQ--AVNAAFV---AKFGM 171

Query: 179 AGQHLEVSSMNAQQMTDFIK-QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237
           +     VS+++A  M DF++ +  D FSD   W+ NWS+ASD ++  RI  TE  + S  
Sbjct: 172 SPSDPGVSAISASDMQDFLQNEFADLFSDPN-WSANWSDASDKSVNSRISRTETANTSVT 230

Query: 238 VNMRGIRDI--MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE 295
            N +  R +   F  V G  F  +NL    +NV+ ++    V  G+ G+   +A LG+++
Sbjct: 231 ANDQTFRQLTQAFAMVAGLGF--QNLNSSTQNVVLQQATQLVSNGIGGLTRVQAFLGVTQ 288

Query: 296 KNINEERVFLQNKNNIIDT---YISKSIG----VEQHTAHAQLSTLINKIEMSYMITTKL 348
           + +++        N+ IDT   ++ KSI     V+      Q+S L   +E +Y +T +L
Sbjct: 289 QRVSD-------ANDQIDTQIDFLEKSISNLESVDPAEVTTQISDLSTALEAAYSVTNRL 341

Query: 349 QKLSILNYL 357
            KLSI+++L
Sbjct: 342 SKLSIMDFL 350


>gi|222084887|ref|YP_002543416.1| flagellar hook-assosiated protein [Agrobacterium radiobacter K84]
 gi|221722335|gb|ACM25491.1| flagellar hook-assosiated protein [Agrobacterium radiobacter K84]
          Length = 331

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 169/326 (51%), Gaps = 12/326 (3%)

Query: 32  EMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQ 91
           E  TG  +D G+ LG+   S +   ++   I   L SNS+V +R+++SQ  LS M    Q
Sbjct: 18  EATTGVYADIGVSLGSGTASNVNLTRDVTRIDSILSSNSVVNQRMTSSQTALSDMSSQAQ 77

Query: 92  DMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGY 151
             +  LV L  G +D++   +       +  SFV  AN    G+YLF+G N+  +P+   
Sbjct: 78  KFMDQLVAL-RGNSDDSSIQLTQQTATATMSSFVADANTMVNGEYLFAGTNTDVQPM--- 133

Query: 152 FTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA 211
            T +S A  +    +Q  L + + +    Q + +S +   QM DFI  + +     +   
Sbjct: 134 -TDNSTAATT---AIQSALSDYATA----QGVAISDLTGDQMKDFITNVAEPLVTSDSSW 185

Query: 212 NNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTK 271
           ++WS+ASD N+  RI ++E I+ S N N  G+R +     +    + + L+  A N +T 
Sbjct: 186 SDWSSASDQNMSSRISNSEVIESSTNANATGMRYLALSTTVANALMGQGLSQDALNAVTD 245

Query: 272 KMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQL 331
           +  S  +Q + G+  Q + LG+S+  + +    L  +  II+T IS   GV+ + A  ++
Sbjct: 246 QATSYARQAIDGLNNQASQLGLSQARLTDANTSLNAQKTIINTNISDLTGVDAYEASTKV 305

Query: 332 STLINKIEMSYMITTKLQKLSILNYL 357
           ++L  ++E +Y I +K+Q+LS++NYL
Sbjct: 306 NSLQTQLETAYTIVSKIQQLSLVNYL 331


>gi|254695091|ref|ZP_05156919.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 3 str.
           Tulya]
 gi|261215442|ref|ZP_05929723.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 3 str.
           Tulya]
 gi|260917049|gb|EEX83910.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 3 str.
           Tulya]
          Length = 348

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 171/364 (46%), Gaps = 24/364 (6%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRD 119
            ++     N LV +R++ +Q     + +  Q+ +G L     G  ++ +     A   R 
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA----GANNSGETAKTVAKSARS 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKS 176
             +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q   GF  ++   
Sbjct: 117 MLDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFGFAMDDP-- 173

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRIKDTEGID 233
                  +V++++  +M  F   LE  F++   D  WA NWS+ASD  IK RI  TE  D
Sbjct: 174 -------QVANISGDEMKAF---LEGDFAEQFNDANWAANWSDASDTRIKSRISPTETAD 223

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
            S + N+ G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+
Sbjct: 224 TSISANVDGFRKTVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGL 283

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           ++         +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+
Sbjct: 284 AQSRTEAATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSL 343

Query: 354 LNYL 357
           LNYL
Sbjct: 344 LNYL 347


>gi|17988505|ref|NP_541138.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 1
           str. 16M]
 gi|23500852|ref|NP_700292.1| flagellar hook-associated protein FlgL [Brucella suis 1330]
 gi|62317955|ref|YP_223808.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 1 str.
           9-941]
 gi|83269932|ref|YP_419223.1| flagellar hook-associated protein FlgL [Brucella melitensis biovar
           Abortus 2308]
 gi|161621180|ref|YP_001595066.1| flagellar hook-associated protein FlgL [Brucella canis ATCC 23365]
 gi|163845455|ref|YP_001623110.1| flagellar hook-associated protein FlgL [Brucella suis ATCC 23445]
 gi|189023206|ref|YP_001932947.1| flagellar hook-associated protein FlgL [Brucella abortus S19]
 gi|225686883|ref|YP_002734855.1| flagellar hook-associated protein FlgL [Brucella melitensis ATCC
           23457]
 gi|254691613|ref|ZP_05154867.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 6 str.
           870]
 gi|254699260|ref|ZP_05161088.1| flagellar hook-associated protein FlgL [Brucella suis bv. 5 str.
           513]
 gi|254711816|ref|ZP_05173627.1| flagellar hook-associated protein FlgL [Brucella ceti M644/93/1]
 gi|254714885|ref|ZP_05176696.1| flagellar hook-associated protein FlgL [Brucella ceti M13/05/1]
 gi|254731632|ref|ZP_05190210.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 4 str.
           292]
 gi|256015896|ref|YP_003105905.1| flagellar hook-associated protein [Brucella microti CCM 4915]
 gi|256042864|ref|ZP_05445810.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256112178|ref|ZP_05453099.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 3
           str. Ether]
 gi|256256800|ref|ZP_05462336.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 9 str.
           C68]
 gi|256261980|ref|ZP_05464512.1| flagellar hook-associated protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544140|ref|ZP_05819961.1| flagellar hook-associated protein [Brucella abortus NCTC 8038]
 gi|260564101|ref|ZP_05834586.1| flagellar hook-associated protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260568716|ref|ZP_05839185.1| flagellar hook-associated protein [Brucella suis bv. 4 str. 40]
 gi|260757244|ref|ZP_05869592.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 6 str.
           870]
 gi|260759391|ref|ZP_05871739.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 4 str.
           292]
 gi|260883048|ref|ZP_05894662.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 9 str.
           C68]
 gi|261216575|ref|ZP_05930856.1| flagellar hook-associated protein FlgL [Brucella ceti M13/05/1]
 gi|261319445|ref|ZP_05958642.1| flagellar hook-associated protein FlgL [Brucella ceti M644/93/1]
 gi|261749700|ref|ZP_05993409.1| flagellar hook-associated protein FlgL [Brucella suis bv. 5 str.
           513]
 gi|265989299|ref|ZP_06101856.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993605|ref|ZP_06106162.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 3
           str. Ether]
 gi|294852966|ref|ZP_06793638.1| flagellar hook-associated protein 3 FlgL [Brucella sp. NVSL
           07-0026]
 gi|297250153|ref|ZP_06933854.1| flagellar hook-associated protein 3 FlgL [Brucella abortus bv. 5
           str. B3196]
 gi|17984297|gb|AAL53402.1| flagellar hook-associated protein 3 [Brucella melitensis bv. 1 str.
           16M]
 gi|23464516|gb|AAN34297.1| flagellar hook-associated protein FlgL, putative [Brucella suis
           1330]
 gi|62198148|gb|AAX76447.1| hypothetical flagellar hook-associated protein FlgL [Brucella
           abortus bv. 1 str. 9-941]
 gi|82940206|emb|CAJ13262.1| flagellar hook-associated protein FlgL, putative KO: K02397
           flagellar hook-associated protein 3 FlgL [Brucella
           melitensis biovar Abortus 2308]
 gi|161337991|gb|ABX64295.1| flagellar hook-associated 3 family protein [Brucella canis ATCC
           23365]
 gi|163676178|gb|ABY40288.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189021780|gb|ACD74501.1| flagellar hook-associated protein [Brucella abortus S19]
 gi|225642988|gb|ACO02901.1| flagellar hook-associated 3 family protein [Brucella melitensis
           ATCC 23457]
 gi|255998556|gb|ACU50243.1| flagellar hook-associated protein [Brucella microti CCM 4915]
 gi|260097411|gb|EEW81285.1| flagellar hook-associated protein [Brucella abortus NCTC 8038]
 gi|260151744|gb|EEW86837.1| flagellar hook-associated protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260155381|gb|EEW90462.1| flagellar hook-associated protein [Brucella suis bv. 4 str. 40]
 gi|260669709|gb|EEX56649.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 4 str.
           292]
 gi|260677352|gb|EEX64173.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 6 str.
           870]
 gi|260872576|gb|EEX79645.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 9 str.
           C68]
 gi|260921664|gb|EEX88232.1| flagellar hook-associated protein FlgL [Brucella ceti M13/05/1]
 gi|261292135|gb|EEX95631.1| flagellar hook-associated protein FlgL [Brucella ceti M644/93/1]
 gi|261739453|gb|EEY27379.1| flagellar hook-associated protein FlgL [Brucella suis bv. 5 str.
           513]
 gi|262764475|gb|EEZ10507.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 3
           str. Ether]
 gi|262999968|gb|EEZ12658.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263091464|gb|EEZ16000.1| flagellar hook-associated protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|294818621|gb|EFG35621.1| flagellar hook-associated protein 3 FlgL [Brucella sp. NVSL
           07-0026]
 gi|297174022|gb|EFH33386.1| flagellar hook-associated protein 3 FlgL [Brucella abortus bv. 5
           str. B3196]
 gi|326411301|gb|ADZ68365.1| flagellar hook-associated protein FlgL [Brucella melitensis M28]
 gi|326554590|gb|ADZ89229.1| flagellar hook-associated protein FlgL [Brucella melitensis M5-90]
          Length = 348

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 24/364 (6%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRD 119
            ++     N LV +R++ +Q     + +  Q+ +G L     G  ++ +     A   R 
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA----GANNSGETAKTVAKSARS 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKS 176
             +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q   GF  ++   
Sbjct: 117 MLDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFGFAMDDP-- 173

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRIKDTEGID 233
                  +V++++  +M  F   LE  F++   D  WA NWS+ASD  IK RI  TE  D
Sbjct: 174 -------QVANISGDEMKAF---LEGDFAEQFNDANWAANWSDASDTRIKSRISPTETAD 223

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
            S + N  G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+
Sbjct: 224 TSISANADGFRKTVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGL 283

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           ++         +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+
Sbjct: 284 AQSRTEAATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSL 343

Query: 354 LNYL 357
           LNYL
Sbjct: 344 LNYL 347


>gi|148558140|ref|YP_001258002.1| flagellar hook-associated protein FlgL [Brucella ovis ATCC 25840]
 gi|237817500|ref|ZP_04596491.1| flagellar hook-associated protein FlgL [Brucella abortus str. 2308
           A]
 gi|148369425|gb|ABQ62297.1| putative flagellar hook-associated protein FlgL [Brucella ovis ATCC
           25840]
 gi|237787335|gb|EEP61552.1| flagellar hook-associated protein FlgL [Brucella abortus str. 2308
           A]
          Length = 351

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 24/364 (6%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 4   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 63

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRD 119
            ++     N LV +R++ +Q     + +  Q+ +G L     G  ++ +     A   R 
Sbjct: 64  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA----GANNSGETAKTVAKSARS 119

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKS 176
             +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q   GF  ++   
Sbjct: 120 MLDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFGFAMDDP-- 176

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRIKDTEGID 233
                  +V++++  +M  F   LE  F++   D  WA NWS+ASD  IK RI  TE  D
Sbjct: 177 -------QVANISGDEMKAF---LEGDFAEQFNDANWAANWSDASDTRIKSRISPTETAD 226

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
            S + N  G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+
Sbjct: 227 TSISANADGFRKTVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGL 286

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           ++         +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+
Sbjct: 287 AQSRTEAATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSL 346

Query: 354 LNYL 357
           LNYL
Sbjct: 347 LNYL 350


>gi|254702381|ref|ZP_05164209.1| flagellar hook-associated protein FlgL [Brucella suis bv. 3 str.
           686]
 gi|261752944|ref|ZP_05996653.1| flagellar hook-associated protein FlgL [Brucella suis bv. 3 str.
           686]
 gi|261742697|gb|EEY30623.1| flagellar hook-associated protein FlgL [Brucella suis bv. 3 str.
           686]
          Length = 348

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 24/364 (6%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRD 119
            ++     N LV +R++ +Q     + +  Q+ +G L     G  ++ +     A   R 
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA----GANNSGETTKTVAKSARS 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKS 176
             +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q   GF  ++   
Sbjct: 117 MLDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFGFAMDDP-- 173

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRIKDTEGID 233
                  +V++++  +M  F   LE  F++   D  WA NWS+ASD  IK RI  TE  D
Sbjct: 174 -------QVANISGDEMKAF---LEGDFAEQFNDANWAANWSDASDTRIKSRISPTETAD 223

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
            S + N  G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+
Sbjct: 224 TSISANADGFRKTVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGL 283

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           ++         +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+
Sbjct: 284 AQSRTEAATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSL 343

Query: 354 LNYL 357
           LNYL
Sbjct: 344 LNYL 347


>gi|254706498|ref|ZP_05168326.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           M163/99/10]
 gi|254711217|ref|ZP_05173028.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           B2/94]
 gi|256030154|ref|ZP_05443768.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           M292/94/1]
 gi|256158333|ref|ZP_05456237.1| flagellar hook-associated protein FlgL [Brucella ceti M490/95/1]
 gi|256252733|ref|ZP_05458269.1| flagellar hook-associated protein FlgL [Brucella ceti B1/94]
 gi|260166794|ref|ZP_05753605.1| flagellar hook-associated protein FlgL [Brucella sp. F5/99]
 gi|261219811|ref|ZP_05934092.1| flagellar hook-associated protein FlgL [Brucella ceti B1/94]
 gi|261313952|ref|ZP_05953149.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           M163/99/10]
 gi|261318808|ref|ZP_05958005.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           B2/94]
 gi|261756171|ref|ZP_05999880.1| flagellar hook-associated protein [Brucella sp. F5/99]
 gi|265987185|ref|ZP_06099742.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           M292/94/1]
 gi|265996848|ref|ZP_06109405.1| flagellar hook-associated protein FlgL [Brucella ceti M490/95/1]
 gi|260918395|gb|EEX85048.1| flagellar hook-associated protein FlgL [Brucella ceti B1/94]
 gi|261298031|gb|EEY01528.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           B2/94]
 gi|261302978|gb|EEY06475.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           M163/99/10]
 gi|261736155|gb|EEY24151.1| flagellar hook-associated protein [Brucella sp. F5/99]
 gi|262551145|gb|EEZ07306.1| flagellar hook-associated protein FlgL [Brucella ceti M490/95/1]
 gi|264659382|gb|EEZ29643.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           M292/94/1]
          Length = 348

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 24/364 (6%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRD 119
            ++     N LV +R++ +Q     + +  Q+ +G L     G  ++ +     A   R 
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA----GANNSGETAKTVAKSARS 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKS 176
             +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q   GF  ++   
Sbjct: 117 MLDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFGFAMDDP-- 173

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRIKDTEGID 233
                  +V++++  +M  F   LE  F++   D  WA NWS+ASD  IK RI  TE  D
Sbjct: 174 -------QVANISGDEMKAF---LEGDFAEQFNDANWAANWSDASDTRIKSRISPTETAD 223

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
            S + N  G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+
Sbjct: 224 TSISANADGFRKKVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGL 283

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           ++         +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+
Sbjct: 284 AQSRTEAATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSL 343

Query: 354 LNYL 357
           LNYL
Sbjct: 344 LNYL 347


>gi|225628427|ref|ZP_03786461.1| flagellar hook-associated protein FlgL [Brucella ceti str. Cudo]
 gi|225616273|gb|EEH13321.1| flagellar hook-associated protein FlgL [Brucella ceti str. Cudo]
          Length = 351

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 24/364 (6%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 4   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 63

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRD 119
            ++     N LV +R++ +Q     + +  Q+ +G L     G  ++ +     A   R 
Sbjct: 64  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA----GANNSGETAKTVAKSARS 119

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKS 176
             +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q   GF  ++   
Sbjct: 120 MLDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFGFAMDDP-- 176

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRIKDTEGID 233
                  +V++++  +M  F   LE  F++   D  WA NWS+ASD  IK RI  TE  D
Sbjct: 177 -------QVANISGDEMKAF---LEGDFAEQFNDANWAANWSDASDTRIKSRISPTETAD 226

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
            S + N  G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+
Sbjct: 227 TSISANADGFRKKVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGL 286

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           ++         +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+
Sbjct: 287 AQSRTEAATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSL 346

Query: 354 LNYL 357
           LNYL
Sbjct: 347 LNYL 350


>gi|306841278|ref|ZP_07473989.1| flagellar hook-associated protein FlgL [Brucella sp. BO2]
 gi|306288680|gb|EFM60011.1| flagellar hook-associated protein FlgL [Brucella sp. BO2]
          Length = 348

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 171/362 (47%), Gaps = 20/362 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRD 119
            ++     N LV +R++ +Q     + +  Q+ +G L     G  ++ +     A   R 
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA----GANNSGETAKTVAKSARS 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKS 176
             +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q   GF  ++   
Sbjct: 117 MLDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFGFAMDDP-- 173

Query: 177 LLAGQHLEVSSMNAQQMTDFIK-QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
                  +V++++  +M  F++    ++F +D  WA NWS+ASD  IK RI  TE  D S
Sbjct: 174 -------QVANISGDEMKAFMEGDFAEQF-NDANWAANWSDASDTRIKSRISPTETADTS 225

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE 295
            + N  G R  +  AV+  EF    L   A + LT ++L    Q ++    ++  LG+++
Sbjct: 226 ISANADGFRKTVMSAVMVAEFADIGLNASAFDALTTQVLQITTQAVTETTSEQTTLGLAQ 285

Query: 296 KNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                    +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LN
Sbjct: 286 SRTEAATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLN 345

Query: 356 YL 357
           YL
Sbjct: 346 YL 347


>gi|306845417|ref|ZP_07477991.1| flagellar hook-associated protein FlgL [Brucella sp. BO1]
 gi|306274160|gb|EFM55976.1| flagellar hook-associated protein FlgL [Brucella sp. BO1]
          Length = 348

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 169/364 (46%), Gaps = 24/364 (6%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRD 119
            ++     N LV +R++ +Q     + +  Q+ +G L     G  ++ +     A   R 
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA----GANNSGETAKTVAKSARS 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKS 176
             +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q   GF  ++   
Sbjct: 117 ILDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFGFAMDDP-- 173

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRIKDTEGID 233
                  +V++++  +M  F   LE  F++   D  WA NWS+ASD  IK RI  TE  D
Sbjct: 174 -------QVANISGDEMKAF---LEGDFAEQFNDANWAANWSDASDTRIKSRISPTETAD 223

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
            S + N  G R  +  AV+  EF    L   A + LT + L    Q ++    ++  LG+
Sbjct: 224 TSISANADGFRKTVMSAVMVAEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGL 283

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           ++         +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+
Sbjct: 284 AQSRTEAATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSL 343

Query: 354 LNYL 357
           LNYL
Sbjct: 344 LNYL 347


>gi|328545489|ref|YP_004305598.1| flagellar hook-associated protein L [polymorphum gilvum
           SL003B-26A1]
 gi|326415230|gb|ADZ72293.1| Flagellar hook-associated protein L [Polymorphum gilvum
           SL003B-26A1]
          Length = 349

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 169/361 (46%), Gaps = 16/361 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKTT IST ++ +    L  + + +  +L  EM TG+ +D GL LG+R    +    E  
Sbjct: 1   MKTTYISTFTLSDTSRGLLMKQSANLARLQVEMSTGRKADIGLDLGSRTGEAIALRSEHT 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +N+L   RL  +QA L  +    Q  +  LV +   +  +    +  G  +  
Sbjct: 61  RLNAIIDTNALAASRLDVTQAALGDVLGTAQSFLATLVGV---RDSDGSASVAKGEGQGG 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYF-TKDSLAKKSFDQMLQ---GFLEENSKS 176
            +  ++  N    G YLF+G+N+   P+  YF T  +  K + D       GF +++   
Sbjct: 118 LDLLISRLNTQVNGNYLFAGLNTDVAPMANYFETPAASNKAAVDAAFVARFGFSQDDPA- 176

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSA 236
                   VS+++A  M DF+        DD  W  +WS+AS+  +  RI  +E + +S 
Sbjct: 177 --------VSTISAADMDDFLTNFYMPLFDDPAWGADWSSASNDAVSSRISASETLGISV 228

Query: 237 NVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEK 296
           + N    R +  V  +  +  +  L + A   +  K +  + + + G+ +  + +GI+++
Sbjct: 229 SANETAFRTLAAVFTMLADLGTGQLGEAAYGAVVDKAIGLLGEAIGGVTDLMSRMGIAQE 288

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
            ++     L  +  I++  I+    V       +L+T I ++E +Y ++ ++Q+LSILNY
Sbjct: 289 RVSNASDRLAIQAGILNQRINVLENVNPEETAVRLNTAITQLETTYAVSARIQRLSILNY 348

Query: 357 L 357
           L
Sbjct: 349 L 349


>gi|254720775|ref|ZP_05182586.1| flagellar hook-associated protein FlgL [Brucella sp. 83/13]
 gi|265985833|ref|ZP_06098568.1| flagellar hook-associated protein FlgL [Brucella sp. 83/13]
 gi|306840134|ref|ZP_07472919.1| flagellar hook-associated protein FlgL [Brucella sp. NF 2653]
 gi|264664425|gb|EEZ34686.1| flagellar hook-associated protein FlgL [Brucella sp. 83/13]
 gi|306404779|gb|EFM61073.1| flagellar hook-associated protein FlgL [Brucella sp. NF 2653]
          Length = 348

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 170/362 (46%), Gaps = 20/362 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRD 119
            ++     N LV +R++ +Q     + +  Q+ +G L     G  ++ +     A   R 
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA----GANNSGETAKTVAKSARS 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKS 176
             +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q   GF  ++   
Sbjct: 117 MLDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFGFAMDDP-- 173

Query: 177 LLAGQHLEVSSMNAQQMTDFIK-QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
                  +V++++  +M  F++    ++F +D  WA NWS+ASD  IK RI  TE  D S
Sbjct: 174 -------QVANISGDEMKAFMEGDFAEQF-NDANWAANWSDASDTRIKSRISPTETADTS 225

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE 295
            + N  G R  +  AV+  EF    L   A + LT + L    Q ++    ++  LG+++
Sbjct: 226 ISANADGFRKTVMSAVMVAEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGLAQ 285

Query: 296 KNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                    +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LN
Sbjct: 286 SRTEAATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLN 345

Query: 356 YL 357
           YL
Sbjct: 346 YL 347


>gi|153011506|ref|YP_001372720.1| flagellar hook-associated protein FlgL [Ochrobactrum anthropi ATCC
           49188]
 gi|151563394|gb|ABS16891.1| flagellar hook-associated 3 family protein [Ochrobactrum anthropi
           ATCC 49188]
          Length = 348

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 172/367 (46%), Gaps = 30/367 (8%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + +K  +E  TG   D GL LG++    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMLKAQQEATTGTVFDVGLSLGSKSGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q    ++ +  Q+ +G L       T  N    +A  +  S
Sbjct: 61  RLSVLTDMNKLVQQRMNATQTAAGTIIENTQNFLGDL-------TGANNTAESASTIAKS 113

Query: 121 YESFVT----FANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEEN 173
            +S +       N +  G+Y+F+G+N+  KP+  Y T+ S A+ +  Q  Q   GF  ++
Sbjct: 114 AKSILNSVTGLLNTSYNGEYIFAGVNTDVKPVADY-TEGSAAQTAVRQAFQTHFGFAIDD 172

Query: 174 SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRIKDTE 230
                     +V+++   +M  F   LE  F+D   D  WA NWS+ASD  IK RI  TE
Sbjct: 173 P---------QVANITGDEMKAF---LEGDFADEFNDANWAANWSDASDTVIKSRISPTE 220

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
             D S + N  G R  +  AV+  EF +  L + A   LT + + T    ++    ++  
Sbjct: 221 TADTSISANADGFRKTIMSAVMVAEFATIGLNNSAFEALTHQAMQTTTTAITETTSEQTT 280

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
           LG+++         +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ 
Sbjct: 281 LGLAQSRTEAATTRIAAQQKILNQSVLNLEEVDPYEAATRVNALKTQIETSYSLTVQLQN 340

Query: 351 LSILNYL 357
           +S+LNYL
Sbjct: 341 MSLLNYL 347


>gi|239834425|ref|ZP_04682753.1| flagellar hook-associated protein FlgL [Ochrobactrum intermedium
           LMG 3301]
 gi|239822488|gb|EEQ94057.1| flagellar hook-associated protein FlgL [Ochrobactrum intermedium
           LMG 3301]
          Length = 351

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 172/365 (47%), Gaps = 26/365 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  +  +   + +K  +E  TG   D GL LG++    +   +E +
Sbjct: 4   MKAQSISTYGATSALRAMVAKNKAEMLKAQQEATTGTVFDVGLSLGSKSGQTVSLRKEYD 63

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q    ++ +  Q+ +G L       T  N    +A  +  S
Sbjct: 64  RLSVLTDMNKLVQQRMNATQTAAGTIIENTQNFLGDL-------TGANNTAESAATIAKS 116

Query: 121 YESFVT----FANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEEN 173
            +S +       N +  G+Y+F+G+N+  KP+  Y T+ S A+ +  Q  Q   GF  ++
Sbjct: 117 AKSILNSVTGLLNTSYNGEYIFAGVNTDVKPVADY-TEGSAAQTAVRQAFQNHFGFAIDD 175

Query: 174 SKSLLAGQHLEVSSMNAQQMTDFIK-QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGI 232
                     +V+++   +MT F+     ++F +D  WA NWS+ASD  IK RI  TE  
Sbjct: 176 P---------QVANITGDEMTAFLDGDFAEEF-NDANWAANWSDASDTVIKSRISPTETA 225

Query: 233 DVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLG 292
           D S + N  G R  +  AV+  EF +  L   A   LT K + T    ++    ++  LG
Sbjct: 226 DTSISANADGFRRTIMSAVMVAEFATIGLNSQAFEALTGKAMQTTTTAITETTSEQTTLG 285

Query: 293 ISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLS 352
           +++         +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S
Sbjct: 286 LAQSRTQAATTRIVAQQKILNQSVLNLEEVDPYEAATRVNALKTQIETSYSLTVQLQNMS 345

Query: 353 ILNYL 357
           +LNYL
Sbjct: 346 LLNYL 350


>gi|323136999|ref|ZP_08072079.1| flagellar hook-associated protein FlgL [Methylocystis sp. ATCC
           49242]
 gi|322397760|gb|EFY00282.1| flagellar hook-associated protein FlgL [Methylocystis sp. ATCC
           49242]
          Length = 348

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 160/355 (45%), Gaps = 16/355 (4%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST SI   +     EL +D  +  +E+ TG+ +D GL LG R           +     L
Sbjct: 6   STYSITTSLRRTLVELQRDLDRSQKELATGRHADLGLALGMRAGLSYSLGDTYDTAQSIL 65

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            +N LV+ RL T+Q  ++++    Q M   L+  L+   D       A   R S  +F++
Sbjct: 66  ATNDLVSTRLDTTQTAIANLLSNAQAMRATLMSSLDDGGDVGAIETQA---RVSLSNFIS 122

Query: 127 FANMTDEGQYLFSGINSSEKPLNGYFT-KDSLAKKSFDQMLQ---GFLEENSKSLLAGQH 182
             N  D   +LF+G+NS   P+N YF    S  K + D       GF + + +       
Sbjct: 123 TLNSGDGDSFLFAGVNSEVAPINNYFADPPSPNKVALDAAFIANFGFAQTDPR------- 175

Query: 183 LEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242
             V+ +   QM  F+          E W  +WSNASD  ++ +I  +  ID S   N   
Sbjct: 176 --VADITGDQMEAFLSGPMTALFAPEAWKTDWSNASDQPLRSQISMSVTIDTSVTANAPA 233

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
           ++ +     + T+  +  +   A   L K     +   +S +++ +A +G+ ++N+    
Sbjct: 234 LQKLAMAYTMMTDLGASGMNSAAYKALLKSATEVIDDSISALLKTQAQVGVMQRNVVNAN 293

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  ++N I+  ++    V+   A A+++ L+ +IE +Y +T K+ +LS+  YL
Sbjct: 294 QTMTIQSNAIEMNLNSLETVDLTEAAARVNGLMTQIETAYTLTAKITQLSLAKYL 348


>gi|114706626|ref|ZP_01439527.1| flagellar hook-associated protein L [Fulvimarina pelagi HTCC2506]
 gi|114538018|gb|EAU41141.1| flagellar hook-associated protein L [Fulvimarina pelagi HTCC2506]
          Length = 350

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 160/334 (47%), Gaps = 13/334 (3%)

Query: 27  VKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSM 86
           V   +E+ TG+ +D G  LG  V   +    E +++ +   +N+ + +R  T QA L S 
Sbjct: 27  VIAQKEVSTGRYADVGKSLGTSVARTISMRAELSNLEKLTTANTAIGQRFETMQAALGS- 85

Query: 87  QKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEK 146
             + +     L  L+ G   +  F IN      +    V   + +   +Y+FSG  +   
Sbjct: 86  --VAETGESLLSSLISGSGTSVGFDINQRSATANIGQLVGALSGSFGSRYIFSGAKTDTP 143

Query: 147 PLNGYFTKD---SLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDK 203
           P+      D   S A  S D   Q ++  N+         + + + A QM  F+    + 
Sbjct: 144 PIKADLAADYGTSAAFASVDAAWQAYVTANAGG-------DPAQITAAQMESFLANEFEA 196

Query: 204 FSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTD 263
             DD  WA NWS+ASD+    RI + + +  SA+ N +  R+IM   V+ + F  ++L D
Sbjct: 197 VFDDANWAANWSDASDNQTVSRIGENDMMRSSASANDQSFRNIMKSYVMLSNFSGESLAD 256

Query: 264 GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
             R VL    + T+ +GLS + + R+ +G+ E+ I      L+ +  I+   I +   ++
Sbjct: 257 ETRQVLASSSIETLSKGLSQLTDLRSDIGLGEERIERANEGLKVQTAILKIGIGEEEEID 316

Query: 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            + A  ++ +L+N +EMSY +T ++ +LS+LN+L
Sbjct: 317 IYEAKTRIDSLMNTLEMSYALTARVSRLSLLNFL 350


>gi|121602544|ref|YP_989381.1| flagellar hook-associated protein FlgL [Bartonella bacilliformis
           KC583]
 gi|120614721|gb|ABM45322.1| putative flagellar hook-associated protein 3 (HAP3) [Bartonella
           bacilliformis KC583]
          Length = 360

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 162/338 (47%), Gaps = 22/338 (6%)

Query: 32  EMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQ 91
           E+VTGQ  D GL LG +   +++ + + N +    ++N L   R+S++QA + S+     
Sbjct: 32  ELVTGQLYDPGLTLGRKTGRLVDIQNQMNFLEGFSNTNKLALSRMSSAQAAIQSLIAAGD 91

Query: 92  DMVGPLVI-----LLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEK 146
           D   P  +     +L G   N        +  ++  SF++  N +  G Y+F G N+++ 
Sbjct: 92  DETAPGALTLFNNMLVGDAANQTPSAAQAVAENALASFISALNTSYNGDYIFGGTNTTQP 151

Query: 147 PLNGY-FTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
           PLN Y    +S   K        FL+        G++ E   + A+ M  FI ++     
Sbjct: 152 PLNAYKVGGESGPSKVVHDAFTTFLD--------GRNPE--DLTAEDMDKFIDEVFSTLF 201

Query: 206 DDEYWANNWSNASDHNIKYRI-KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDG 264
           D+E ++  +SNA D +I+ RI  + E ++V+A+ N +G RD M   ++  EF    L+  
Sbjct: 202 DEENFSKIFSNAKDGSIEKRIGPNGETVNVAASANEKGFRDAMKNMILVAEFGDIGLSKE 261

Query: 265 ARNVLTKKMLSTVQQ-----GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
           A+  L  K  ++  Q      ++ II   + LG +E  I      ++ + N++       
Sbjct: 262 AQEALFAKARNSSDQTSTTTAINEIIATASRLGSTEARIKGATKQIEIQTNLLKGQQIDM 321

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           IGV+   A  +L  L   + +SY +T ++ +LS++NYL
Sbjct: 322 IGVDSTEAGQRLKALEAMLNLSYTLTARISQLSLVNYL 359


>gi|116248738|ref|YP_764579.1| flagellar hook-associated protein FlgL [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253388|emb|CAK11776.1| putative flagellar hook associated protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 348

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 168/363 (46%), Gaps = 21/363 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHE---EMVTGQSSDYGLQLGARVTSILEWEQ 57
           MK + +S+S++    N+L   +++   KL +   E  TG  +D G+ LGA     +    
Sbjct: 1   MKASFVSSSAM---QNVLRLTISQSQNKLQQASTEATTGTYADSGVSLGAGAAKSINLTS 57

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
                A    SN++V  R++ SQ  LSS++     +V  L  L +   D     +     
Sbjct: 58  AIAQAASFKMSNAVVELRMNASQTALSSLKDAGDSLVSNLTAL-QASQDTTSIAVALQTA 116

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
             +    V+ AN +  G++LF G N   +PL+    + S    +    L  +        
Sbjct: 117 SATISQLVSTANTSVNGEFLFGGTNLDSQPLSD---QSSAVSDTIVSALNDYAT------ 167

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDV 234
             G   +VS +  +++  FI    +    +  W +    WS AS  N+  RI  +E I  
Sbjct: 168 --GLGKDVSELTGEEIGSFITDTVEPMFSESAWTDASEGWSAASSTNMTSRISGSETITS 225

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGIS 294
           S N N  G+R +   +V+ +    ++L+  A++ +  K ++   Q  SGI+ Q++ LG++
Sbjct: 226 STNANSEGMRYLALASVVVSALFGQDLSSDAQSTVASKAIAYAAQATSGIVTQQSELGLA 285

Query: 295 EKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSIL 354
           ++ + +    L  ++ ++   +    GV+ + A   ++ L  ++E +Y + +KLQ LS++
Sbjct: 286 QERLEKANDALDAQSTLLQGNLVDLQGVDTYEASTLVNQLQTQLETAYTLVSKLQSLSLV 345

Query: 355 NYL 357
           NYL
Sbjct: 346 NYL 348


>gi|327192296|gb|EGE59261.1| flagellar hook-associated protein FlgL [Rhizobium etli CNPAF512]
          Length = 348

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 167/363 (46%), Gaps = 21/363 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHE---EMVTGQSSDYGLQLGARVTSILEWEQ 57
           MK + +S+S++    N+L   +++   KL +   E  TG  +D G+ LGA     +    
Sbjct: 1   MKASFVSSSAM---QNVLRLTISQSQTKLQQASTEATTGTYADIGVSLGADAAKSINLTG 57

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
             +  A     N++V  R+  SQ  LSS++     +V  L  L +   D     +     
Sbjct: 58  AIDQAASFKAGNAVVALRMEASQTALSSLKDAGDSLVSNLTAL-QASQDTTSIAVALQTA 116

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
             +    ++ AN +  G++LF G N   +PL     + +    +    L G+        
Sbjct: 117 SATISQLISTANTSVNGEFLFGGTNLDNQPLTD---QSATVSDTIVTALTGYAT------ 167

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDV 234
             G   +V+ +  +++  FI    +    +  W +    WS AS  ++  RI  +E I  
Sbjct: 168 --GLGKDVNELTGEEIGSFITDTVEPLFSESAWTDASTGWSTASSTDMTSRISGSETITS 225

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGIS 294
           S N N  G+R +   +V+ +    ++L+D A++ +  K +    Q  SGI+ +++ LG+S
Sbjct: 226 STNANSDGMRYLALASVVVSALFGQDLSDDAKSTVASKAIGYAAQATSGIVTEQSQLGLS 285

Query: 295 EKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSIL 354
           ++ + +    L  +++++   +    G + + A   ++ L  ++E +Y + +KLQ LS++
Sbjct: 286 QERLEKADDALDAQSSLLQGKLVDLQGADTYEASTLVNQLQTQLETAYTLVSKLQSLSLV 345

Query: 355 NYL 357
           NYL
Sbjct: 346 NYL 348


>gi|256059806|ref|ZP_05450001.1| flagellar hook-associated protein FlgL [Brucella neotomae 5K33]
 gi|261323786|ref|ZP_05962983.1| flagellar hook-associated protein FlgL [Brucella neotomae 5K33]
 gi|261299766|gb|EEY03263.1| flagellar hook-associated protein FlgL [Brucella neotomae 5K33]
          Length = 334

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 166/364 (45%), Gaps = 38/364 (10%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRD 119
            ++     N LV +R++ +Q     + +  Q+ +G L     G  ++ +     A   R 
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA----GANNSGETAKTVAKSARS 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKS 176
             +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q   GF  ++   
Sbjct: 117 MLDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFGFAMDDP-- 173

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRIKDTEGID 233
                  +V++++  +M  F   LE  F++   D  WA NWS+ASD +I           
Sbjct: 174 -------QVANISGDEMKAF---LEGDFAEQFNDANWAANWSDASDTSI----------- 212

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
            SAN +  G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+
Sbjct: 213 -SANAD--GFRKTVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGL 269

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           ++         +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+
Sbjct: 270 AQSRTEAATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSL 329

Query: 354 LNYL 357
           LNYL
Sbjct: 330 LNYL 333


>gi|90422626|ref|YP_530996.1| flagellar hook-associated protein FlgL [Rhodopseudomonas palustris
           BisB18]
 gi|90104640|gb|ABD86677.1| putative flagellar hook-associated protein [Rhodopseudomonas
           palustris BisB18]
          Length = 347

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 161/357 (45%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M TT IST+SI   + I   +      +  +E  TG+++D GL LGA     +    E  
Sbjct: 1   MATTFISTNSISTTLRISAMKSQAALSRATKEATTGRNADVGLSLGALAGRDVVLRAELL 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
           ++ + + +N LV  RL T+Q  +  +    +     L   L  +       I A     +
Sbjct: 61  NVDKLVDTNGLVGGRLDTAQQRVDELIDTAKSFQKDL---LAARNSAGGGTIIAQSASAN 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +  ++  N+T +GQYLF GIN++ +P+  Y    S +K + D            S L  
Sbjct: 118 LQGLISTLNVTMDGQYLFGGINTATRPILDY-AAGSASKTAVDAAFSATFGFAQNSPL-- 174

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               VS + A  M  F+        DD  W  NWS A+D  ++ RI  T+ ID SA+ N 
Sbjct: 175 ----VSGITAADMQSFLDTTFQAQFDDPAWGTNWSTATDQVMRSRISTTQTIDSSASANE 230

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
              R +     + ++  +  L   A   +    +  + + ++ +    A +G +++    
Sbjct: 231 PAFRKLAKAYTMLSDLGTSGLNQSAFQTVIDAAIEDIGEAINDLAGVGAKIGTAQEQTTG 290

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               L+ + ++I   I+    V+   A  +++ L +++EMS  +T ++Q+LSILNYL
Sbjct: 291 ATERLKVQGDLITQQINAMEQVDPTEASVRVTNLKSQLEMSLALTARIQQLSILNYL 347


>gi|158422273|ref|YP_001523565.1| flagellar hook-associated protein FlgL [Azorhizobium caulinodans
           ORS 571]
 gi|158329162|dbj|BAF86647.1| putative flagellar hook-associated protein [Azorhizobium
           caulinodans ORS 571]
          Length = 352

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 158/338 (46%), Gaps = 23/338 (6%)

Query: 28  KLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQ 87
           K + E+ TG+ +D GL+LG + +  ++   E N +   L SNSL    ++ SQ  L+   
Sbjct: 28  KKNTELATGRYADIGLELGVKTSLSVDLRHEYNQVQGLLDSNSLTDSIMTRSQTGLT--- 84

Query: 88  KIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKP 147
            I+ +       LL  +             +    S ++  N TD  +Y+F GINS + P
Sbjct: 85  NILNNASTYQKTLLSSQASAETVTQMQLEGQQGLASLLSSLNTTDGTRYVFGGINSGQTP 144

Query: 148 LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL--EDKFS 205
           +  + T   +A ++  Q   GF   +          + +++ + QM  F+  +  ED  +
Sbjct: 145 MKDFATNAQVAIQTAFQTAFGFPVSDP---------QAANITSGQMQTFLNNVFSEDNTN 195

Query: 206 -----DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-MFVAVIGTEFLS- 258
                +D  WA  WSNAS  N+  +I  TE + VS   N   +R + M  +++G  +L  
Sbjct: 196 TSALFNDTNWAAQWSNASSTNLTRQISQTENVSVSTTANDTAMRKLAMAYSMMG--YLGV 253

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            +L   A   +     +T+  G++G+    A +G+S+  +      L    +++ + I+ 
Sbjct: 254 GSLNMSALQTVMDTSRATLSAGMTGVTNTAAAIGVSQTRVTTANSELNKTLDVVKSRINS 313

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
              V+   A  QL TL N++ MSY  TTKL +LSI+NY
Sbjct: 314 LESVDPAEAKTQLDTLTNQLSMSYSTTTKLLQLSIMNY 351


>gi|182680455|ref|YP_001834601.1| flagellar hook-associated protein FlgL [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636338|gb|ACB97112.1| flagellar hook-associated 3 family protein [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 348

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 156/337 (46%), Gaps = 23/337 (6%)

Query: 28  KLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQ 87
           K   E+ TG+ +D GL LG+   + +   Q++N +     +N + + RL T+Q+ LSS+ 
Sbjct: 28  KTQIEISTGRYADVGLALGSGTAAGISLRQQENVLKTITTTNGIASTRLDTTQSVLSSIG 87

Query: 88  KIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS----YESFVTFANMTDEGQYLFSGINS 143
              Q  +  L+    G T     P    +L+ S     +S     N T  G YLF G+NS
Sbjct: 88  ANAQSFLESLL----GATSATGDP---AVLQASAQVNLQSLTASLNTTLNGDYLFGGVNS 140

Query: 144 SEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200
            ++P+  Y T  S    + DQ  Q   G  + +S          VSS+ A  M +F+   
Sbjct: 141 GQQPITDYSTPGSSNGNALDQAFQTTFGISQSDSA---------VSSITASNMQNFLDSS 191

Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN 260
                    W+ NWS ASD  +  +I D +  + S + N +  +++     +  +  + N
Sbjct: 192 FANLFQGSNWSTNWSQASDTVLTTQINDHQTANTSVSANEKAFKELFSAYTMIGQLGTAN 251

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
           L   A   +  + ++TV+  +S +   +  +G+ +  I      +  + N + + ++   
Sbjct: 252 LNSSAFKTVVNQAVTTVKSAISDLTNIQGGVGLVQNQIVNANDTMSLRMNYLTSQVNTLE 311

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            V+   A  +++ L  +IE +Y +T++L KLS++NYL
Sbjct: 312 SVDPAEASTRMTALQTQIETAYSLTSQLHKLSLVNYL 348


>gi|115523195|ref|YP_780106.1| flagellar hook-associated protein FlgL [Rhodopseudomonas palustris
           BisA53]
 gi|115517142|gb|ABJ05126.1| flagellar hook-associated 3 family protein [Rhodopseudomonas
           palustris BisA53]
          Length = 347

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 164/358 (45%), Gaps = 12/358 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M TT IS+++I   +     +      +  +E  TG+ +D GL LGA     +    E  
Sbjct: 1   MATTFISSNAITTTLRNAAMKSQVAVSRATKEATTGRLADVGLSLGALAGRDVVLRAELL 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + + +N LV+ RL T+Q  +  + +  +     L+         N    +AG    +
Sbjct: 61  DVDKLVDTNGLVSGRLDTAQQRVGELIETAEAFQKDLLAARNSANGGNVIAQSAGA---N 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S +   N+   GQYLF G N+  KP+  Y    S +K + D     +   +  S    
Sbjct: 118 LQSLIATLNVAMNGQYLFGGTNTGVKPMVEY-AAGSTSKTAIDTTFASYFGFSQASP--- 173

Query: 181 QHLEVSSMNAQQMTDFIK-QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
               VS + A  M  F+   L+ +F+D   W  NWS A D  ++ RI  T+ ID S + N
Sbjct: 174 ---SVSGITAANMQTFLTTDLQTEFAD-PAWGTNWSTALDQPMRSRISTTQTIDSSVSAN 229

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
             G R +     +  +  + +L   A  V+    ++ V + ++ +    A LG +++   
Sbjct: 230 EPGFRKLAKAYTMLNDLGTGSLNQTAFQVVIDTAITAVGEAINDLAGVGARLGTAQQQTT 289

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    L+ + ++I   I+    V+   A  +++TL N++EMS  +T ++Q++SIL YL
Sbjct: 290 DAISRLKVQGDLITEQITAMEKVDPTEASVRVTTLNNQLEMSLALTARIQQMSILKYL 347


>gi|241113582|ref|YP_002973417.1| flagellar hook-associated 3 family protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861790|gb|ACS59456.1| flagellar hook-associated 3 family protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 348

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 168/363 (46%), Gaps = 21/363 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHE---EMVTGQSSDYGLQLGARVTSILEWEQ 57
           MK + +S+S++    N+L   +++   KL +   E  TG  +D G+ LG      +    
Sbjct: 1   MKASFVSSSAM---QNVLRLTISQSQNKLQQASTEATTGTYADIGVSLGNGAAKSINLTS 57

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
                A    SN++V  R+  SQA LSS++     +V  L  L +   D     +     
Sbjct: 58  AIAQAASFKTSNAVVELRMDASQAALSSLKDAGDSLVSNLTAL-QASQDTTSIAVALQTA 116

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
             +    V+ AN +  G++LF G N   +PL+    + S    +    L  +        
Sbjct: 117 GATISQLVSTANTSVNGEFLFGGTNLDSQPLSD---QSSAVSDAIVSALNDYAT------ 167

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYW---ANNWSNASDHNIKYRIKDTEGIDV 234
             G   +V+ +  +++  FI    +    +  W   ++ WS AS  ++  RI  +E I  
Sbjct: 168 --GLGKDVNELTGEEIGSFITDTVEPMFSESAWTDTSDGWSTASSTDMTSRISGSETITS 225

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGIS 294
           S N N  G+R +   +V+ +    ++L+  A++ +  K ++   Q  SGI+ Q++ LG++
Sbjct: 226 STNANSEGMRYLALASVVVSALFGQDLSSDAQSTVASKAIAYAAQATSGIVTQQSELGLA 285

Query: 295 EKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSIL 354
           ++ + +    L  ++ ++   +    GV+ + A   ++ L  ++E +Y + +KLQ LS++
Sbjct: 286 QERLEKANDALDAQSTLLQGNLVDLQGVDTYEASTLVNQLQTQLETAYTLVSKLQSLSLV 345

Query: 355 NYL 357
           NYL
Sbjct: 346 NYL 348


>gi|118589964|ref|ZP_01547368.1| flagellar hook-associated protein L [Stappia aggregata IAM 12614]
 gi|118437461|gb|EAV44098.1| flagellar hook-associated protein L [Stappia aggregata IAM 12614]
          Length = 348

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 170/362 (46%), Gaps = 19/362 (5%)

Query: 1   MKTTGISTSSIFE--RMNILTKELNKDSV--KLHEEMVTGQSSDYGLQLGARVTSILEWE 56
           MKTT IST ++ +  R  I     N+ S+  +L  E+ +G+  D GL LG +    +   
Sbjct: 1   MKTTYISTITLADASRRQIQ----NQASLVQRLSIEVSSGRKYDVGLDLGTKTGESVSLR 56

Query: 57  QEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA-G 115
            E + +     +N+L   RL  SQA +  + K  QD +  LV L E     +    +A G
Sbjct: 57  SEFHFLNGITDTNALTASRLDVSQAAMGDVLKDAQDFLSTLVALRENSGTADIVKADAVG 116

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSK 175
            L    E   +  N    G ++F+GIN+ ++P   Y    +  K + D     FL E   
Sbjct: 117 NL----ELLTSRLNTQLNGNFVFAGINTDQEPFVDYSDPGAPNKLAADA---AFLTEFG- 168

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
             +A  +  VS +    M+ ++    D    D  W  +WS+A+D  +  RI  +E +  S
Sbjct: 169 --IAQTNPGVSGITPAAMSTYLNGAFDLMFQDPAWGTSWSSATDSVMVSRISASETVSSS 226

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE 295
            + N +  RD+     + ++  +++L      V+  K +  +  G++ I  Q   LG  +
Sbjct: 227 VSANEQAFRDLAAAYTMMSDLGNEDLDPETLKVVVNKAIEKLGTGIAEITSQMGQLGNVQ 286

Query: 296 KNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           + +      L+ + +I++  I+    V+      +L+T + ++E +Y +T+++Q+LSILN
Sbjct: 287 EQVKLASERLKVQTDILNRRINDLENVDPEETAVRLNTALTQLETTYAVTSRMQRLSILN 346

Query: 356 YL 357
           YL
Sbjct: 347 YL 348


>gi|254505260|ref|ZP_05117411.1| Putative flagellar hook-associated protein 3 [Labrenzia alexandrii
           DFL-11]
 gi|222441331|gb|EEE48010.1| Putative flagellar hook-associated protein 3 [Labrenzia alexandrii
           DFL-11]
          Length = 339

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 156/351 (44%), Gaps = 25/351 (7%)

Query: 14  RMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVT 73
           R NIL++    +  KL  E+ +G+  D GL LGAR    +    E N +     +N+L  
Sbjct: 7   RRNILSQSTLVN--KLGVELSSGRKFDIGLDLGARTGESVSVRSEFNFLNGIKDTNALAE 64

Query: 74  KRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES----FVTFAN 129
            RL+ SQA +  M    Q  +  LV L E        P  A +++   E      V+  N
Sbjct: 65  SRLAVSQAAMDDMLTDAQAFMATLVALKED-------PTTADIVKADAEGNMGLLVSRLN 117

Query: 130 MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKSLLAGQHLEVS 186
               G ++F GINS+  P   Y    S  K + D       GF + N           V 
Sbjct: 118 SQQNGYFIFGGINSANIPFADYSDPTSPNKVAADAAYLAEFGFDQSNPG---------VP 168

Query: 187 SMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI 246
            + A  MT ++    D       W  +WS ASD  +  RI  +E +  SA+ N    R++
Sbjct: 169 GITAAAMTTYLSGNFDAMFQSPNWEASWSTASDTPLSSRISASETVATSASANETAFREL 228

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
                + ++  ++ L+D A  V+    + T+   ++ +      +G  ++ +      L 
Sbjct: 229 AKAYTMMSDLGNEALSDEAYKVVVDTAIQTLGSAMNNLTSVMGKMGTVQEQVKLAGERLD 288

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            + NI++T I+    V++     +L+T + ++E +Y +T+++Q LS+LN++
Sbjct: 289 VQTNILNTRINDLELVDKEETSVRLTTALTQLETTYAVTSRMQGLSLLNFI 339


>gi|218528729|ref|YP_002419545.1| flagellar hook-associated protein FlgL [Methylobacterium
           chloromethanicum CM4]
 gi|218521032|gb|ACK81617.1| flagellar hook-associated 3 family protein [Methylobacterium
           chloromethanicum CM4]
          Length = 350

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 155/360 (43%), Gaps = 14/360 (3%)

Query: 1   MKTTG-ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEK 59
           M TTG IS+ +++         L  +      E+ TG+ +D G  LG  V       ++ 
Sbjct: 1   MMTTGFISSLNLWNAPRTGVSRLQSELANATREIATGRFADVGATLGGGVAGAFGLRRQS 60

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN-KFPINAGMLR 118
             +A    SN+  T RL+ +Q  L+ ++   +  +  L  L    TD   K  +++   R
Sbjct: 61  AVLASLTQSNAAATSRLAATQGALTEIRSSAETTLNELTAL---PTDQRAKTLVDSA--R 115

Query: 119 DSYESFVTFANMTDEGQYLFSGINSSEKPLNGY-FTKDSLAKKSFDQMLQGFLEENSKSL 177
               +     N +  GQ++F G NS   PL  Y  +  S AK + D++   F        
Sbjct: 116 GRLAALAGTLNTSTNGQFVFGGTNSGAAPLASYEGSPTSAAKTAVDKLFTDFFG------ 169

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237
            A      S++   Q+  FI         +  W+  WS AS   +  +I  TE +  S +
Sbjct: 170 FAPGSTAASTITPNQLQGFIDGPLAGLFTEVNWSRTWSGASSRTLDSQISLTETVTTSVS 229

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N    R +    VI +      L+  A+NV T K++  + Q    +   +A LG ++  
Sbjct: 230 ANAEPFRKLGMAYVIASGLGLSGLSQEAQNVATGKVMDILGQVSGSLTTMQADLGRAQSQ 289

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           I E    +  +  +++  I     V+   A +++  +  +++MSY +T +L+ LS++N++
Sbjct: 290 ITEANARMAKQTALLNGQIRDLENVDPAEAKSRVDAITTQMQMSYGLTAQLRSLSLINFI 349


>gi|254559270|ref|YP_003066365.1| FlgL protein [Methylobacterium extorquens DM4]
 gi|254266548|emb|CAX22312.1| FlgL protein [Methylobacterium extorquens DM4]
          Length = 350

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 153/359 (42%), Gaps = 12/359 (3%)

Query: 1   MKTTGISTS-SIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEK 59
           M TTG S+S +++         L  +     +E+ TG+ +D G  LG  V       ++ 
Sbjct: 1   MMTTGFSSSLNLWNAPRTGVSRLQSELANATKEIATGRFADVGATLGGGVAGAFSLRRQS 60

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
             +A    SN+  T RL+ +Q  L+ ++      +  L  L     D     + A   R 
Sbjct: 61  AVLASLTQSNAAATSRLAATQGALTEIRSSADTTLNELTAL---PADQRAKTLVASA-RG 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGY-FTKDSLAKKSFDQMLQGFLEENSKSLL 178
              +     N +  G+++F+G NS   PL  Y  +  S AK + D++ + F         
Sbjct: 117 RLAALAGTLNTSTNGRFVFAGTNSGAAPLTSYEGSPTSAAKTAVDKLFKDFFG------F 170

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
           A      S++   Q+  FI         +  W+  WS AS   +  +I  TE +  S + 
Sbjct: 171 APGSAAASTITPNQLEGFIDGPLAGLFTEVNWSRTWSGASSRTLDSQISLTETVTTSVSA 230

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           N    R +    VI +      L+  A+NV T K++  + Q    +   +A LG ++  I
Sbjct: 231 NAEPFRKLGMAYVIASGLGLSGLSQEAQNVATGKVMDILGQVSGSLTTMQADLGRAQSQI 290

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            E    +  +  ++   I     V+   A +++  +  +++MSY +T +L+ LS++N++
Sbjct: 291 TEANARMSKQTALLTGQIRDLENVDPAEAKSRVDAITTQMQMSYGLTAQLRSLSLINFI 349


>gi|217976242|ref|YP_002360389.1| flagellar hook-associated protein FlgL [Methylocella silvestris
           BL2]
 gi|217501618|gb|ACK49027.1| flagellar hook-associated 3 family protein [Methylocella silvestris
           BL2]
          Length = 347

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 11/353 (3%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST SI   +     ++  +      E  TG  +D GL L ++    +  + +   +   
Sbjct: 5   ISTQSISSSLRQSVLKMQAELSSAQTEAATGNHADIGLSLASKTGQSVSLQAQAAMLQTL 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +NS+   R++  Q  L  +Q   Q ++  L  L    +  N   I A    D+ +  +
Sbjct: 65  SETNSIALTRMNMIQNQLGDLQSGAQSLLNSL--LSTNGSAQNAATIEASG-ADNLKGLI 121

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ-GFLEENSKSLLAGQHLE 184
              N T  G YLF+GIN++  PL  Y+   + +K + D      F    + S +AG    
Sbjct: 122 ASLNSTLNGDYLFAGINTATAPLTDYYATGASSKTAVDAAFSTAFGMSQTSSSVAG---- 177

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
              ++A  M DF+            W N+WS+ASD  I   I     +  S + N    R
Sbjct: 178 ---ISASAMQDFLDGPFAALFQGSNWTNDWSSASDEAIASSISPGGAVISSVSANQSAFR 234

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D+     + ++   +  +    +VL  K    +  G+S + + +A LG+++ ++++    
Sbjct: 235 DLAEAYTMLSDLGGEKYSQATYDVLVGKARDLLTDGISALSDAQAGLGVAQSSVSDANTQ 294

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  + NI+ + I     +  +    ++S L  +I+ +Y +T+ LQ LS++ YL
Sbjct: 295 MSLQMNILSSQIGNLESINGYEVQVRISDLQTQIQTAYSLTSHLQDLSLVKYL 347


>gi|163850125|ref|YP_001638168.1| flagellar hook-associated protein FlgL [Methylobacterium extorquens
           PA1]
 gi|163661730|gb|ABY29097.1| flagellar hook-associated 3 family protein [Methylobacterium
           extorquens PA1]
          Length = 350

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 153/359 (42%), Gaps = 12/359 (3%)

Query: 1   MKTTG-ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEK 59
           M TTG IS+ +++         L  +     +E+ TG+ +D G  LG  V       ++ 
Sbjct: 1   MMTTGFISSLNLWNAPRTGVSRLQSELANATKEIATGRFADVGATLGGGVAGAFGLRRQS 60

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
             +A    SN+  T RL+ +Q  L+ ++      +  L  L   +    K  +++   R 
Sbjct: 61  AVLASLTQSNAAATSRLAATQGALTEIRSSADTTLNELTALPADQ--RAKTLVDSA--RG 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGY-FTKDSLAKKSFDQMLQGFLEENSKSLL 178
              +     N +  GQ++F G NS   PL  Y  +  S AK + D++   F         
Sbjct: 117 RLAALAGTLNTSTNGQFVFGGTNSGAAPLTSYEGSPTSAAKTAVDKLFTDFFG------F 170

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
           A      S++   Q+  FI         +  W+  WS AS   +  +I  TE +  S + 
Sbjct: 171 APGSAAASTITPNQLQGFIDGPLAGLFTEVNWSRTWSGASSRTLDSQISLTETVTTSVSA 230

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           N    R +    VI +      L+  A+NV T K++  + Q    +   +A LG ++  I
Sbjct: 231 NAEPFRKLGMAYVIASGLGLSGLSQEAQNVATGKVMDILGQVSGSLTTMQADLGRAQSQI 290

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            E    +  +  ++   I     V+   A +++  +  +++MSY +T +L+ LS++N++
Sbjct: 291 TEANARMSKQTALLTGQIRDLENVDPAEAKSRVDAITTQMQMSYGLTAQLRSLSLINFI 349


>gi|12330682|gb|AAG52879.1| FlgL [Brucella abortus]
          Length = 309

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 130/288 (45%), Gaps = 22/288 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q   ++  KI+++    L  L             A   R  
Sbjct: 61  RLSVLTDMNKLVQQRMTATQ---TAAGKIIENTQNFLGDLAGANNSGETAKTVAKSARSM 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKSL 177
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q   GF  ++    
Sbjct: 118 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFGFAMDDP--- 173

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRIKDTEGIDV 234
                 +V++++  +M  F   LE  F++   D  WA NWS+ASD  IK RI  TE  D 
Sbjct: 174 ------QVANISGDEMKAF---LEGDFAEQFNDANWAANWSDASDTRIKSRISPTETADT 224

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLS 282
           S + N  G R  +  AV+ TEF    L   A + LT + L    Q ++
Sbjct: 225 SISANADGFRKTVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVT 272


>gi|90418363|ref|ZP_01226275.1| putative flagellar hook-associated protein [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338035|gb|EAS51686.1| putative flagellar hook-associated protein [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 352

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 159/345 (46%), Gaps = 39/345 (11%)

Query: 30  HEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKI 89
            +E+ TG+ +D GL LG+R    +    E+        +N+L+ +R  T Q  L S+ K 
Sbjct: 30  QKEVTTGRFADVGLTLGSRTNQTVSLRVERESAIRIQEANTLIGQRFDTMQTALESIAKT 89

Query: 90  VQDMVGPLVILLEGKTDNNKFPINAGM------LRDSYESFVTFANMTDEGQYLFSGINS 143
            ++++  L+         +  P +AG+       +   + F+   N     ++LFSG  +
Sbjct: 90  GENLLASLI---------SNGPADAGISASVQQAKAGLQQFMGAINAASGSRFLFSGAAT 140

Query: 144 SEKPLNGYFTK-----------DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQ 192
            +  L   FTK           +S AKK+ +  L      ++  L A   L+ +      
Sbjct: 141 DQPAL--AFTKVGGGVASSYEDNSTAKKAVNDALTAAAPASAADLEA--FLDGA------ 190

Query: 193 MTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI 252
             D  K  +   SD   W + WS A    +  RI D+E +DVS   +    R+I+   V+
Sbjct: 191 FNDLFKVPQP--SDGTGW-DMWSKADSSPVVNRISDSETLDVSYPASDEAFRNIVKAYVM 247

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
            ++  +K + +  R +LT + + T+  GLS + E RA +G  +  +      L  + N++
Sbjct: 248 ISDLGAKTMDESQRQLLTSRAVETLSLGLSQLTEIRAEIGGKQSRLEITNETLGTRKNVL 307

Query: 313 DTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              IS    V+ + A  +++TL N +E SY +T ++ +LSI+NYL
Sbjct: 308 TMSISSFEDVDAYEASTRVTTLTNLLEASYALTARISRLSIMNYL 352


>gi|240137259|ref|YP_002961728.1| FlgL protein [Methylobacterium extorquens AM1]
 gi|240007225|gb|ACS38451.1| FlgL protein [Methylobacterium extorquens AM1]
          Length = 350

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 152/359 (42%), Gaps = 12/359 (3%)

Query: 1   MKTTG-ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEK 59
           M TTG IS+ +++         L  +      E+ TG+ +D G  LG  V       ++ 
Sbjct: 1   MMTTGFISSLNLWNSPRTGVSRLQSELANATREIATGRFADVGATLGGDVAGAFSLRRQS 60

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
             +A    SN+  T RL+ +Q  L+ ++      +  L  L   +    K  +++   R 
Sbjct: 61  AVLASLTQSNAAATSRLAATQGALTEIRSSADTTLNELTALPADQ--RAKTLVDSA--RG 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGY-FTKDSLAKKSFDQMLQGFLEENSKSLL 178
              +     N +  GQ++F+G NS   PL  Y  +  S AK + D++   F         
Sbjct: 117 RLAALAGTLNTSTNGQFVFAGTNSGAAPLTSYEGSPTSAAKTAVDKLFTDFFG------F 170

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
           A      S++   Q+  FI         +  W   WS AS   +  +I  TE +  S + 
Sbjct: 171 APGSAAASTITPNQLEGFIDGPLAGLFTEVNWNRTWSGASSRTLDSQISLTETVTTSVSA 230

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           N    R +    VI +      L+  A+NV T K++  + Q    +   +A LG ++  I
Sbjct: 231 NAEPFRKLGMAYVIASGLGLSGLSQEAQNVATGKVMDILGQVSGSLTTMQADLGRAQSQI 290

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            E    +  +  ++   I     V+   A +++  +  +++MSY +T +L+ LS++N++
Sbjct: 291 TEANARMSKQTALLTGQIRDLENVDPAEAKSRVDAITTQMQMSYGLTAQLRSLSLINFI 349


>gi|319409167|emb|CBI82811.1| putative flagellar hook-associated protein 3 (HAP3) [Bartonella
           schoenbuchensis R1]
          Length = 360

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 164/344 (47%), Gaps = 34/344 (9%)

Query: 32  EMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQ 91
           E  TG+  D GL LG R   ++  E + +++    ++N L   R+S+ QA + S+     
Sbjct: 32  EATTGKLYDPGLTLGRRTGRLVNIESQMSYLEGFSNTNKLTMLRMSSMQAAIHSLVSSGD 91

Query: 92  DMVGPLVI-----LLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEK 146
           +   P  +     +L G   +    +   + +DS  +F++  N    G+Y+F G N+SE+
Sbjct: 92  EAAAPGALTLFNNMLVGDPGSAAPSVIQAVAQDSLSAFISALNTNYNGEYVFGGTNTSEQ 151

Query: 147 PLNGYFT-----KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201
           PLN Y          + + +FD+ L G   E+              + +++M +FI    
Sbjct: 152 PLNFYTVGGETGPSKVVRDTFDEFLGGRKPED--------------LTSEEMEEFIDGPF 197

Query: 202 DKFSDDEYWANNWSNASDHNIKYRI-KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN 260
               D+E +   +SNA D +I+ RI  + E ++V+A+ N +G RD M   V+  EF    
Sbjct: 198 SSLFDEENFTQIFSNAQDGSIEKRILSNGETVNVAASANEKGFRDAMKSMVLVAEFGDIG 257

Query: 261 LTDGARNVLTKKMLSTVQQGLSG-----IIEQRAVLGISEKNIN--EERVFLQNKNNIID 313
           L+  A+  L  K  ++  Q  +      II   + +G +E  +    +R+ +Q K+ ++ 
Sbjct: 258 LSKDAQEGLYSKARTSNDQTSTSSSTSEIIAIASRIGSAEARVKTATQRIEIQ-KDLLMK 316

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             I   IGV+   A  ++  L   + +SY +T ++ +LS++NYL
Sbjct: 317 AKIDL-IGVDSTEAVQKVQALEAMLNLSYTLTGRISQLSLVNYL 359


>gi|27381967|ref|NP_773496.1| flagellar hook-associated protein FlgL [Bradyrhizobium japonicum
           USDA 110]
 gi|27355137|dbj|BAC52121.1| flgL [Bradyrhizobium japonicum USDA 110]
          Length = 352

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 147/334 (44%), Gaps = 14/334 (4%)

Query: 28  KLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQ 87
           K  +E  TG+ +D GL+LGA     L    + +   + + +N LV+ RL  +Q  ++ + 
Sbjct: 29  KASKEATTGRFADVGLELGATTGGDLTLRADWSFADQLVDTNELVSGRLDVTQTRITQLG 88

Query: 88  KIVQDMVGPLVILLEGKTDNNK---FPINAGMLRDSYESFVTFANMTDEGQYLFSGINSS 144
                 +  L+      TDN      P  +  L+D     +   N++  G YLFSGIN+ 
Sbjct: 89  TTATSFLKDLIA--ARSTDNGGRIVLPPASANLQD----LIGALNVSYNGSYLFSGINTQ 142

Query: 145 EKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH-LEVSSMNAQQMTDFIKQLEDK 203
             P+  Y T       S +Q+   F           Q    VSS+   QM  F+    D 
Sbjct: 143 NMPITAYAT----GSASKNQVDADFAAAPPTGFGFPQSSASVSSITPAQMQTFLNTTFDA 198

Query: 204 FSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTD 263
                 W  NWS+A+D  ++ RI  TE  D S + N  G R +     +  +  +  L+ 
Sbjct: 199 EFASPAWNTNWSSATDQVMQSRISTTEVADTSVSANQTGFRKLAEAYTMMADLGNAKLSQ 258

Query: 264 GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
               V+  K +  +   ++ +      +G  ++ I      L+ + +I++  I     V+
Sbjct: 259 ETFQVVVDKAIGLIGGAITDLATLGGGVGTVQQRITSATNKLKTQQDILNNQIVGMEKVD 318

Query: 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              A  +++TL  +I+ +  +T++LQK+S++NYL
Sbjct: 319 PTEASVRVNTLQTQIQTALALTSQLQKISLINYL 352


>gi|209547528|ref|YP_002279446.1| flagellar hook-associated protein FlgL [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538772|gb|ACI58706.1| flagellar hook-associated 3 family protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 348

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 166/363 (45%), Gaps = 21/363 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHE---EMVTGQSSDYGLQLGARVTSILEWEQ 57
           MK + +S+S++    N+L   +++   KL +   E  TG  +D G+ LGA     +    
Sbjct: 1   MKASFVSSSAM---QNVLRLTISQSQTKLQQASTEATTGTYADIGVSLGAGTAKTISLTS 57

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
             +  A    SN++V  R+  SQ  LSS++     +V  L  L +   D     +     
Sbjct: 58  AIDQAASFQTSNAVVELRMDASQTALSSLKDAGDSLVSNLTAL-QASQDTTSIAVALQTA 116

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
             +    ++ AN +  G++LF G N   +PL     + S    +    L  +        
Sbjct: 117 GSTISQLISTANTSVNGEFLFGGTNLDSQPLTD---QSSTVSDTIVTALGDYAT------ 167

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDV 234
             G   +V+ +   ++  FI    +    +  W +    WS AS  ++  RI  +E I  
Sbjct: 168 --GLGKDVNELTGDEIGTFITGTVEPMFSESGWTDASAGWSTASSTDMTSRISSSETITS 225

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGIS 294
           S N N  G+R +   +V+ +    ++L+  A++ +  K +    Q  SGI+ Q++ LG+S
Sbjct: 226 STNANSEGMRYLALASVVVSALFGQDLSSDAQSTVATKAIGYAAQATSGIVTQQSQLGLS 285

Query: 295 EKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSIL 354
           ++ + +    L  +++++   +    GV+ + A   ++ L  ++E +Y + +KLQ LS++
Sbjct: 286 QERLEKANDALDAQSSLLQGKLVDLQGVDAYEASTLVNQLQTQLETAYTLVSKLQGLSLV 345

Query: 355 NYL 357
           NYL
Sbjct: 346 NYL 348


>gi|218662014|ref|ZP_03517944.1| flagellar hook-associated protein FlgL [Rhizobium etli IE4771]
          Length = 371

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 160/350 (45%), Gaps = 21/350 (6%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHE---EMVTGQSSDYGLQLGARVTSILEWEQ 57
           MK + +S+S++    N+L   +++   KL +   E  TG  +D G+ LGA     +    
Sbjct: 36  MKASFVSSSAM---QNVLRLTISQSQTKLQQASTEATTGTYADIGVSLGAGAAKSINLTS 92

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
             +  A    SNS+V  R+  SQ  LSS++     +V  L  L +   D     +     
Sbjct: 93  AIDQAASFKTSNSVVALRMEASQTALSSLKDAGDSLVSNLTAL-QASQDTTSIAVALQTA 151

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
             +    ++ AN +  G++LF G N   +PL      D  A  S D ++    +      
Sbjct: 152 SATISQLISTANTSVNGEFLFGGTNLDNQPLT-----DQSATVS-DTIVTALTD-----Y 200

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYW---ANNWSNASDHNIKYRIKDTEGIDV 234
             G   +V+ +  +++  FI    +    +  W   ++ WS AS  ++  RI  +E I  
Sbjct: 201 ATGLGKDVNELTGEEIGSFITDTVEPMFSESAWTDASSGWSTASSTDMTSRISGSETITS 260

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGIS 294
           S N N  G+R +   +V+ +    ++L+D A++ +  K +    Q  SGI+ Q++ LG+S
Sbjct: 261 STNANSDGMRYLALASVVVSALFGQDLSDDAKSTVASKAIGYAAQATSGIVTQQSQLGLS 320

Query: 295 EKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMI 344
           ++ + +    L  +++++   +    GV+ + A   ++ L  ++E +Y +
Sbjct: 321 QERLEKADDALDAQSSLLQGKLVDLQGVDTYEASTLVNQLQTQLETAYTL 370


>gi|296445194|ref|ZP_06887154.1| flagellar hook-associated 3 family protein [Methylosinus
           trichosporium OB3b]
 gi|296257368|gb|EFH04435.1| flagellar hook-associated 3 family protein [Methylosinus
           trichosporium OB3b]
          Length = 349

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 151/335 (45%), Gaps = 17/335 (5%)

Query: 28  KLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQ 87
           K   E+ TG+ +D GL LG      +        ++   +SN+++  RLST+   L ++ 
Sbjct: 27  KAQVEVSTGRVADLGLALGGGTAQDVSLGVRSADLSSITNSNAVIAARLSTTDTSLETIA 86

Query: 88  KIVQDMVGPLVILLEGK-TDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEK 146
              Q+ +  LV    G  +D      NA       +S +   + +  G YLF G+++S  
Sbjct: 87  TTAQNFLETLVGAQSGAGSDAQAIQDNA---VSGLKSLIGALDTSIGGVYLFGGVSTSTS 143

Query: 147 PLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSD 206
           P+  YF+    A K  D + Q F+   S   +      V S+   QM  +   LE  FSD
Sbjct: 144 PIADYFSDPPSASK--DALDQAFV---SAFGVTQSDDAVGSITQSQMQSY---LEGGFSD 195

Query: 207 ---DEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFV-AVIGTEFLSKNLT 262
                 W  +WS+ASD     RI  ++  D S + N    R I    A++    ++K  +
Sbjct: 196 LFSASGWTTSWSSASDRATSNRISLSQIADTSVSANDSAFRGIAAAYAMVADSGVTKLGS 255

Query: 263 DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322
           D    VL +   +T+   +  +   RA +G+ + N++     L  + N + + I     V
Sbjct: 256 DAYNEVL-RTATTTLSSAIGDLTRLRASVGVMQTNVSNANDSLTAQQNALASQIGALENV 314

Query: 323 EQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + + A  +L+ L  ++E SY +T K+Q+L++  Y+
Sbjct: 315 DPYEASTRLNNLTTQLETSYTLTGKIQQLTLTKYI 349


>gi|319405423|emb|CBI79042.1| putative flagellar hook-associated protein 3 (HAP3) [Bartonella sp.
           AR 15-3]
          Length = 360

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 177/372 (47%), Gaps = 28/372 (7%)

Query: 1   MKTTGISTSSIF-ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEK 59
           M+ + IST  +   R NI++ E   D +K   EM TGQ  D GL+LG +   +++ E + 
Sbjct: 1   MRVSSISTYVLNNARRNIIS-EGQSDLMKAGYEMATGQVYDPGLELGRKTGRLMDIENQM 59

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSM--QKIVQDMVGPLVI---LLEGKTDNNKFPINA 114
           +++     SN L++ RLS+ Q  + S+      +   G L I   +L G   N    +  
Sbjct: 60  SYLEGYSTSNKLLSLRLSSVQVAIQSLIASGDKEATPGALTIFNNMLVGDAGNATPSVAQ 119

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENS 174
            + ++S  +F++  N    G+Y+F GIN+SE PL  Y       K   +      ++E  
Sbjct: 120 SVAQNSLGAFISALNTNFNGEYVFGGINTSEPPLKFY-------KVGGETGPSKIVQETF 172

Query: 175 KSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRI-KDTE 230
           ++ L G+ LE   + +++M +FI   +  FSD   +E +   +SNA   +I+  I  + +
Sbjct: 173 ENFLNGRKLE--DLTSEEMEEFI---DGPFSDLFNEENFKEFFSNAQGGSIEKHIAPNGD 227

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKML-----STVQQGLSGII 285
            +D + + N +G RD M   ++  EF    L+  A+  L  +       ++    +  II
Sbjct: 228 KVDAAVSANEQGFRDAMKNLILVAEFGDIGLSKEAQESLFSRARVSADDTSTSSAVDKII 287

Query: 286 EQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMIT 345
              + +G +E  +      ++ +  ++       IGV+      ++  L   +E SY +T
Sbjct: 288 ATASKVGSTEARVKAATQQIETQVGLLKGAKINMIGVDAAEVAQKVKALEAMLEASYTLT 347

Query: 346 TKLQKLSILNYL 357
             +++LS++NYL
Sbjct: 348 DMIRRLSLINYL 359


>gi|254698188|ref|ZP_05160016.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260762635|ref|ZP_05874967.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260673056|gb|EEX59877.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 246

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 122/263 (46%), Gaps = 24/263 (9%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRD 119
            ++     N LV +R++ +Q     + +  Q+ +G L     G  ++ +     A   R 
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA----GANNSGETAKTVAKSARS 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ---GFLEENSKS 176
             +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q   GF  ++   
Sbjct: 117 MLDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFGFAMDDP-- 173

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRIKDTEGID 233
                  +V++++  +M  F   LE  F++   D  WA NWS+ASD  IK RI  TE  D
Sbjct: 174 -------QVANISGDEMKAF---LEGDFAEQFNDANWAANWSDASDTRIKSRISPTETAD 223

Query: 234 VSANVNMRGIRDIMFVAVIGTEF 256
            S + N  G R  +  AV+ TEF
Sbjct: 224 TSISANADGFRKTVMSAVMVTEF 246


>gi|86360904|ref|YP_472791.1| flagellar hook-associated protein FlgL [Rhizobium etli CFN 42]
 gi|86285006|gb|ABC94064.1| flagellar hook-associated protein [Rhizobium etli CFN 42]
          Length = 348

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 163/363 (44%), Gaps = 21/363 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHE---EMVTGQSSDYGLQLGARVTSILEWEQ 57
           MK + +S+S++    N+L   +++   KL +   E  TG  +D G+ LG+     +    
Sbjct: 1   MKASFVSSSAM---QNVLRLTISQSQNKLQQASTEATTGTYADIGVSLGSGAAKSINLTS 57

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
                A    SNS+V  R+  SQ  LSS++     +V  L  L +   D     +     
Sbjct: 58  AIAQAASFKTSNSVVALRMEASQTALSSLKDAGDSLVSNLTAL-QASQDTTSIAVALQSA 116

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
             +    ++ AN +  G++LF G N   +PL     + S    +    L  +        
Sbjct: 117 NATISQLISTANTSVNGEFLFGGTNLDSQPLTD---QSSAVSDTIVTALNDYAT------ 167

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDH---NIKYRIKDTEGIDV 234
             G   +VS +  +++  FI    +    +  W +  S  S     ++  R+  +E I  
Sbjct: 168 --GLGKDVSELTGEEIGSFITDTVEPMFSESSWTDASSGWSSASSTDMTSRVSASETITS 225

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGIS 294
           S N N  G+R +   A + +    ++L+  A++ +  K +    Q  SGI+ Q++ LG+S
Sbjct: 226 STNANSEGMRYLALAATVVSALFGQDLSSDAQSTVASKAIGYAAQATSGIVTQQSELGLS 285

Query: 295 EKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSIL 354
           ++ + +    L  +++++   +    GV+ + A   ++ L  ++E +Y + +KLQ LS++
Sbjct: 286 QERLEKANDALDAQSSLLQGNLVDLQGVDTYEASTLVNQLQTQLETAYTLVSKLQNLSLV 345

Query: 355 NYL 357
           NYL
Sbjct: 346 NYL 348


>gi|319403980|emb|CBI77568.1| putative flagellar hook-associated protein 3 (HAP3) [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 360

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 174/371 (46%), Gaps = 26/371 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+   IST  +      L  E   D +K   EM TGQ  D GL LG +   +++ E + +
Sbjct: 1   MRVPSISTYVLNNARRNLISEGKSDLMKAGYEMATGQVYDPGLTLGRKTGRLMDIENQMS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSM--QKIVQDMVGPLVI---LLEGKTDNNKFPINAG 115
           ++     SN L++ RLS+ QA + S+      +   G LV+   +L G   N        
Sbjct: 61  YLEGYSTSNKLLSLRLSSVQAAIQSLIASGDKESTPGSLVVFNNMLVGDAGNAAPSAAQA 120

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSK 175
           + +++  +F++  N    G+Y+F G N+SE PL  Y       K   +      + E  +
Sbjct: 121 VAQNALSAFISALNTNFNGEYIFGGTNTSEPPLKFY-------KVCGETGPSKIVHEAFE 173

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRI-KDTEG 231
           + L G+  E   + +++M +FI   +  FSD   +E +   +SNA D + +  I  + + 
Sbjct: 174 NFLNGRKPE--DLTSEEMEEFI---DGPFSDLFNEENFKEFFSNAKDGSTEKHIAPNGDK 228

Query: 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGAR-NVLTKKMLSTVQQGLSGIIEQ--- 287
           +DV+ + N +G RD M   ++  EF    L+  A+ ++ ++  +S      S ++++   
Sbjct: 229 VDVAVSANDKGFRDAMKNLILVAEFGDIGLSKEAQESLFSRARVSADNTSTSSVVDEITA 288

Query: 288 -RAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITT 346
             + +G +E  +      ++ +  ++       IGV+      ++  L   +E SY +T 
Sbjct: 289 TASRVGSTETRVKAATHQIETQVGLLKGAQIDMIGVDAAEVAQKVKALEAMLEASYTLTD 348

Query: 347 KLQKLSILNYL 357
            +++LS++NYL
Sbjct: 349 MIRRLSLINYL 359


>gi|319406996|emb|CBI80633.1| putative flagellar hook-associated protein 3 (HAP3) [Bartonella sp.
           1-1C]
          Length = 360

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 174/371 (46%), Gaps = 26/371 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+   IST  +      +  E   D +K   EM TGQ  D GL LG +   +++ E + +
Sbjct: 1   MRVPSISTYVLNNAQRNIISEGKFDLMKAGYEMATGQVYDPGLTLGRKTGRLMDIENQMS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSM--QKIVQDMVGPLVI---LLEGKTDNNKFPINAG 115
           ++     SN L++ RLS+ QA + S+      +   G LV+   +L G   N        
Sbjct: 61  YLEGYSTSNKLLSLRLSSVQAAIQSLIASGDKESTPGALVVFNNMLVGDAGNATPSATQA 120

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSK 175
           + +++  +F++  N    G+Y+F G N+SE PL  Y       K   +      + E  +
Sbjct: 121 VAQNALSAFISALNTNFNGEYIFGGTNTSEPPLKFY-------KVGGETGPSKIVHEAFE 173

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRI-KDTEG 231
           S L G+  E   + +++M +FI   +  FSD   +E +   +SNA D + +  I  + + 
Sbjct: 174 SFLNGRKPE--DLTSEEMEEFI---DGPFSDLFNEENFKEFFSNAKDGSTEKHIAPNGDK 228

Query: 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGAR-NVLTKKMLSTVQQGLSGIIEQ--- 287
           +DV+ + + +G RD M   ++  EF    L+  A+ ++ ++  +S      S ++++   
Sbjct: 229 VDVAVSASDKGFRDAMKNLILVAEFGDVGLSKEAQESLFSRARVSADNTSTSSVVDEIIA 288

Query: 288 -RAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITT 346
             + +G +E  +      ++ +  ++       IGV+      ++  L   +E SY +T 
Sbjct: 289 TASRVGSAETRVKAATHQIETQVGLLKGAQIDMIGVDAADVAQKVKALEAMLEASYTLTD 348

Query: 347 KLQKLSILNYL 357
            +++LS++NYL
Sbjct: 349 MIRRLSLVNYL 359


>gi|170748123|ref|YP_001754383.1| flagellar hook-associated protein FlgL [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654645|gb|ACB23700.1| flagellar hook-associated 3 family protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 351

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 168/376 (44%), Gaps = 44/376 (11%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVT-GQSSDYGLQLGARVTSILEWEQEK 59
           MKT+ IST++++      +  L  +  K + EM   G+ +D GL+LG +    L+  Q  
Sbjct: 1   MKTSYISTATLWNSPRSHSARLQAEIAKANVEMDNDGRFADVGLELGHKTGLDLDLRQAV 60

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
           + +  +   N L T RL+ +Q    ++ +I  D    L ++  GK   +     A     
Sbjct: 61  DDLKAQQSRNKLTTLRLTATQ---EALNQIRADGESFLALVAPGKPFASSGAELAQGAAA 117

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTK-DSLAKKSFDQMLQ---GFLEENSK 175
              +     N +  GQ LF+GIN+  +P+    T     AK +FD   Q   GFL   S 
Sbjct: 118 RLSALTGHLNTSVAGQALFAGINTDHRPIADSQTGLPPAAKSAFDTAFQTAFGFLPGTSP 177

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
             L        ++ A QM  F+         D  W   WS+AS+ NI+  +  TE  + S
Sbjct: 178 DAL--------NITAAQMQAFLDGPAAALFADPQWGATWSSASNVNIRSELGGTETAETS 229

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE 295
            N N++ +R +  +  +G++    +L    ++ +  KM     + L+G+    A  G+++
Sbjct: 230 VNANVQTVRQLAQLYTLGSQIGLSSLAPETQSAVFDKM-----RNLAGV----ATFGLTQ 280

Query: 296 KNINEERVFLQNKNNIIDTYISKSI--------------GVEQHTAHAQLSTLINKIEMS 341
             I  +   +Q +   IDT +   I               VE  T  + L T   ++++S
Sbjct: 281 --IQADLGTVQARMKGIDTQLDAKIKGLTLGYRSFEDVDPVELKTRQSNLQT---QLQIS 335

Query: 342 YMITTKLQKLSILNYL 357
           Y +T +L+K+++++Y+
Sbjct: 336 YSLTNELRKMNLIDYV 351


>gi|319898658|ref|YP_004158751.1| flagellar hook-associated protein 3 (HAP3) [Bartonella clarridgeiae
           73]
 gi|319402622|emb|CBI76167.1| putative flagellar hook-associated protein 3 (HAP3) [Bartonella
           clarridgeiae 73]
          Length = 360

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 174/374 (46%), Gaps = 32/374 (8%)

Query: 1   MKTTGISTSSIF-ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEK 59
           M+ + IST  +   R NI++ E   D +K   EM TGQ  D GL LG +   +++ E + 
Sbjct: 1   MRVSSISTYVLNNARRNIIS-EGQSDLMKAAYEMATGQVYDPGLALGRKTARLIDVENQM 59

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQD----MVGPLVI---LLEGKTDNNKFPI 112
           +++     S+ L+T RLS+ Q  + ++  I  D      G L I   +L G   N     
Sbjct: 60  SYLEGYSTSDKLLTLRLSSVQVAIQTL--IASDDKEAAPGALTIFNNMLVGDAGNATPSA 117

Query: 113 NAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEE 172
              + +++  +F++  N    G+Y+F G N+SE PL  Y       K   +      ++E
Sbjct: 118 AQAVAQNALGAFISALNTNFNGEYIFGGTNTSEPPLKFY-------KVGGETGPSKIVQE 170

Query: 173 NSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNIKYRI-KD 228
             ++ L G+ LE   + +++M +FI   +  FSD   +E +   +SNA D +I+  I  +
Sbjct: 171 TFENFLNGRKLE--DLTSEEMEEFI---DGPFSDLFNEENFKEFFSNAQDGSIEKHIAPN 225

Query: 229 TEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTV-----QQGLSG 283
            + +D + + N +G R  M   ++  EF    L+  A+  L  +  ++         +  
Sbjct: 226 GDKVDAAVSANDKGFRYAMKNLILVAEFGDIGLSKEAQESLFSRARASADNTSTSSAVDE 285

Query: 284 IIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYM 343
           II   + +G +E  +      ++ +  ++       I V+      ++  L   +E SY 
Sbjct: 286 IIATASRVGSTEARVKAATQQIEIQVGLLRRAQINMIAVDAAEVAQKVKALETMLEASYT 345

Query: 344 ITTKLQKLSILNYL 357
           +T  +++LS++NYL
Sbjct: 346 LTDMIRRLSLINYL 359


>gi|312115278|ref|YP_004012874.1| flagellar hook-associated protein FlgL [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220407|gb|ADP71775.1| flagellar hook-associated protein FlgL [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 344

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 140/331 (42%), Gaps = 13/331 (3%)

Query: 27  VKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSM 86
            K+  E  +G+ SD    LG++       + +   +   +++NS+V  ++   +A  +S+
Sbjct: 25  AKVTAETSSGKISDPASALGSQYGLYRTLQAQSTSLTNTINANSIVLNKI---KASTTSL 81

Query: 87  QKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEK 146
             I  D       LL  K+  +   + A   +   ES +T  N +  G Y+F G N++  
Sbjct: 82  TAIYSDAETLSNALLSAKSTGDVSAL-ATQAKGMVESLITSLNTSTGGAYVFGGSNTTVT 140

Query: 147 PLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSD 206
           PLN Y      A  S      G  + ++ +         SS+ +  M  F+        D
Sbjct: 141 PLNDYSDAAQAATASAFYAAFGMTQSDTSA---------SSITSSDMASFLSGDYATLFD 191

Query: 207 DEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGAR 266
           D  W+ NWSNAS      RI + +    S + N    R +     + ++    NL    +
Sbjct: 192 DTSWSGNWSNASSTRGTARISEGQTATTSVSANEEAFRQLAEAYTMISDLGLDNLNSTTQ 251

Query: 267 NVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
             +    L  V   ++GI   +  LG+S+  I      L  +  ++D + S+    +   
Sbjct: 252 QTVIVAALEKVNSAMAGISGMQTTLGVSQSQITSTNARLTTEKALVDNWSSELGDSDPTE 311

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           A A+L+ L   ++ SY +T ++  LS++NYL
Sbjct: 312 ASAKLAQLETLLDTSYTLTNRIYSLSLVNYL 342


>gi|188579927|ref|YP_001923372.1| flagellar hook-associated protein FlgL [Methylobacterium populi
           BJ001]
 gi|179343425|gb|ACB78837.1| flagellar hook-associated 3 family protein [Methylobacterium populi
           BJ001]
          Length = 350

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 149/359 (41%), Gaps = 12/359 (3%)

Query: 1   MKTTG-ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEK 59
           M TTG IS+ +++         L  D     +E+ TG+ +D G  LG  V       ++ 
Sbjct: 1   MMTTGFISSLNLWNAPRTGAARLQTDLATATKEIATGRFADVGASLGGGVVESFGLRRQS 60

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
             +A    SN+  + RL  +Q+ L  +Q   +  +  L  L      + +    A   R 
Sbjct: 61  AVLAALTQSNTAASFRLEATQSALKEIQSAAEATLNELTAL----PADQRAKTVAETARG 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGY-FTKDSLAKKSFDQMLQGFLEENSKSLL 178
              +     N +  GQ++F G +S   PL  Y  +  S AK + D     F         
Sbjct: 117 RLVALAGALNTSAGGQFVFGGTDSGTAPLTPYEGSPPSAAKAAVDDAFTDFFG------F 170

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
           A      +++   ++  F+         +  W+  WS+AS   I  +I  TE    S + 
Sbjct: 171 APGSAAAAAITPTELKGFLDGPLAGLFTEVNWSRTWSSASSRTIDSQISLTETATTSTSA 230

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           N    R +    VI +      L+  A+ V T K++  + Q   G+   RA LG ++  I
Sbjct: 231 NAEPFRKLGMAYVIASGLGLSGLSPEAQEVATVKVMDLLGQVSGGLTTLRADLGRTQSQI 290

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    +  +  ++   I     V+   A A++  +  +++MSY +T +L+ LS++N++
Sbjct: 291 TDANARMAKQTTLLTGQIRDLESVDPAEAKARVDAITTQMQMSYGLTAQLRSLSLINFI 349


>gi|304392491|ref|ZP_07374431.1| putative flagellar hook-associated protein FlgL [Ahrensia sp.
           R2A130]
 gi|303295121|gb|EFL89481.1| putative flagellar hook-associated protein FlgL [Ahrensia sp.
           R2A130]
          Length = 347

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 152/341 (44%), Gaps = 20/341 (5%)

Query: 20  KELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTS 79
           + L  +  K   E  T + ++  L+LG +    L  E E   +  R+ +  L T RLS +
Sbjct: 24  RRLQAEIEKSQTEAATNRMANPALELGQQNGLRLRLEGEVQVLESRVQAYDLATVRLSVT 83

Query: 80  QAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFS 139
           Q+ L+++++  +     L+  + G TD N     A     + + F +  N +  G +LF+
Sbjct: 84  QSALTAIKQQGEQFSQSLITAVGGVTDGNFI---AATAEATLQGFRSAMNTSAGGDHLFA 140

Query: 140 GINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK- 198
           GI+S   P+       S    +F     GF   +  S          ++    + DF++ 
Sbjct: 141 GIDSGSAPIGDLSAIRSDIVATFTARF-GFPPGDPAS---------QNLAPDLVVDFLQN 190

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
            L+ + +    W +  S ASD  +K R    + +D+S + N   +R +M  A++  E L+
Sbjct: 191 DLQPRLT-GTAWTSLVSGASDEAVKLRTGTGDTVDISISANESAMRGVMAAALMTAE-LA 248

Query: 259 KNLTDGARNVLTKKMLSTVQQGLS--GIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
             L   +   L +     + QGL+   +++ R  +G++   I+        +   ++T  
Sbjct: 249 PYLNADSVAALARTSTDILAQGLADTNVLQTR--IGLTTGQIDNATAADNARRAGLETVS 306

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              + V+   A ++ +  + ++E +Y +T +LQ LS+L +L
Sbjct: 307 EDMVRVDPFEAASRFNAQVTQLETAYALTGRLQGLSLLRFL 347


>gi|84502374|ref|ZP_01000510.1| flagellar hook-associated protein [Oceanicola batsensis HTCC2597]
 gi|84389186|gb|EAQ01983.1| flagellar hook-associated protein [Oceanicola batsensis HTCC2597]
          Length = 360

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 155/343 (45%), Gaps = 30/343 (8%)

Query: 30  HEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKI 89
            EE+ TG+ +D    LG R    +           R+ SN+L+  RL      L +++  
Sbjct: 32  EEEVATGRHADPFSALGTRAVEAMNTRAVYERTEGRIESNTLLQNRLDLMATALGNVRDA 91

Query: 90  VQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLN 149
            QD++  + I     T + +  +   + +D+Y+S V+F N +  G+ LF G++S    +N
Sbjct: 92  AQDVL-TMTISNTDPTSSRQLYLK-DLAQDAYDSIVSFMNASYNGKALFGGVDSDRTAMN 149

Query: 150 GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSD--- 206
            +  +D+    S   ++         +++ G   + +  NA+     + +++  F+    
Sbjct: 150 SWAERDAATGLSASDVM--------STIVGGGITDAADANAK-----LAEIDAVFNGTPA 196

Query: 207 DEYWAN-----NWSNASD--HNIKYRIKDT--EGIDVSANV--NMRGIRDIMF-VAVIGT 254
           +  W       N +   D   N   R+  +  E +D+   V  N RG RD+M  +A++  
Sbjct: 197 NPAWGYEATFFNGTPLEDGLGNANPRLAASIDENLDIGYGVQANDRGFRDMMRGLAMLAA 256

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
              +    DGA      +  + +  G++G++   A  G  +K + +    L  K  ++  
Sbjct: 257 GDPATITDDGAYEAWVGEAAAALGAGVTGVLNAEARTGSMQKLVEDSNDRLHAKREVLTL 316

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +IS+   V+   A ++L++   +++ SY +T +L +LS +N++
Sbjct: 317 HISELESVDPFEAASRLTSTQTQLQASYAVTARLSQLSFVNFM 359


>gi|218507948|ref|ZP_03505826.1| flagellar hook-associated protein FlgL [Rhizobium etli Brasil 5]
          Length = 127

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 72/126 (57%)

Query: 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVL 291
           I+ S N +  G+R     +V+ +  L +NL+  A   ++K+ +S   +  SG++ Q + L
Sbjct: 2   IESSTNAHSEGMRYFALASVMTSALLGQNLSTDAMTTVSKQAISYTAKATSGLVTQASQL 61

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351
           G+S++ + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +K+Q+L
Sbjct: 62  GLSQERVKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQL 121

Query: 352 SILNYL 357
           S++NYL
Sbjct: 122 SLVNYL 127


>gi|218674574|ref|ZP_03524243.1| flagellar hook-associated protein FlgL [Rhizobium etli GR56]
          Length = 124

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 70/123 (56%)

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGIS 294
           S N N  G+R +   +V+ +    ++L+D A++ +  K +    Q  SGI+ Q++ LG+S
Sbjct: 2   STNANSDGMRYLALASVVVSALFGQDLSDDAKSTVASKAIGYAAQATSGIVTQQSQLGLS 61

Query: 295 EKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSIL 354
           ++ + +    L  +++++   +    GV+ + A   ++ L  ++E +Y + +KLQ LS++
Sbjct: 62  QERLEKADDALDAQSSLLQGKLVDLQGVDTYEASTLVNQLQTQLETAYTLVSKLQSLSLV 121

Query: 355 NYL 357
           NYL
Sbjct: 122 NYL 124


>gi|119385425|ref|YP_916481.1| putative flagellar hook-associated protein [Paracoccus
           denitrificans PD1222]
 gi|119375192|gb|ABL70785.1| putative flagellar hook-associated protein [Paracoccus
           denitrificans PD1222]
          Length = 339

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 134/340 (39%), Gaps = 40/340 (11%)

Query: 28  KLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQ 87
           +L +EM++G  SD    LG  +  I   E     +     + S    RL+T QA L  + 
Sbjct: 29  RLTQEMISGVKSDIPKALGGDLAGISHIESRLQLLTTFQQNASEAQNRLTTMQAALEQVY 88

Query: 88  KIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKP 147
            +V D+ GP ++     +  +     A   +  + S  +  N +  GQYLF+G  +   P
Sbjct: 89  GVVDDL-GPRLLSEPNISGEHDLRARADSTKQDFRSMFSVLNTSIGGQYLFAGSRTDSAP 147

Query: 148 LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDD 207
           L            SFD ML         S +AG         A  + D I    D  +  
Sbjct: 148 LG-----------SFDVMLAEL-----TSTVAG------VTTAADIADRIDAWFDAPAGM 185

Query: 208 EYWANNWSNASDH-NIKYRIKDTEGIDVSANVNMRGIRD-------IMFVAVIGTEFLSK 259
             +A+      D+ + ++ I     ID S   N   +RD       I + +  G    + 
Sbjct: 186 GGFADRIYQGDDNGSTRFSISPDRQIDKSLTANSTALRDTLKGMAIIAYASEAGAAIDTA 245

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
            L D     L  +  + + +G +G+I  +A LG  +  + + +   +N        I+++
Sbjct: 246 TLRD-----LFSEAGTRLLKGAAGLISAQADLGRQQAIVTQAQT--RNSAETAALSIART 298

Query: 320 --IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             IG +       L     KI+  Y IT +L +L++ +YL
Sbjct: 299 NLIGADPFETVTTLEETEAKIQSLYAITARLSRLNLTDYL 338


>gi|89068726|ref|ZP_01156112.1| flagellar hook-associated protein [Oceanicola granulosus HTCC2516]
 gi|89045689|gb|EAR51751.1| flagellar hook-associated protein [Oceanicola granulosus HTCC2516]
          Length = 353

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/359 (19%), Positives = 138/359 (38%), Gaps = 38/359 (10%)

Query: 14  RMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVT 73
           R ++ T     D+V   +E+ TG+ +D     GA  T +L+          ++ ++  + 
Sbjct: 18  RQDVATVRDRLDNVG--QEVATGKRTDIYRAAGADATELLQLHAAFERQQAQIDADKALA 75

Query: 74  KRLSTSQAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
            RL    + + S++ + + +    V + + G  D       +     + E  +   N   
Sbjct: 76  TRLDAMSSVMDSIRTLGEQVRTAAVNLTVTGSGDYGALKAAS---HTALEHMIGQLNTRH 132

Query: 133 EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFL-------------EENSKSLLA 179
            G  LF+G+ ++   L G+   D+   +    ++ G +               + ++L A
Sbjct: 133 AGAALFAGVETASAALTGWTDADTGTGQVPRDLVAGIIGGGITDAADAAAKAADLEALFA 192

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
           G   E +  N     D       + S                   RI     +D     N
Sbjct: 193 GPDFEATFYNGAPQVDGAGNPVPRLS------------------ARIDAGVTLDFGVQAN 234

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDG-ARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
              +RD+     +   F    + DG AR          +  G+SG IE  A LG     +
Sbjct: 235 DGPLRDLYRGLAMFAAFDVSAIADGPAREAWIGAATDALSSGISGTIEMEARLGSQRNAL 294

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +E    L++++++ +  I+    V+ + A  +L+ L  ++E SY++T +L  LS L Y+
Sbjct: 295 DETLALLESRSDLYNAQINDLQSVDPYEAATRLADLETQLEASYLVTRRLADLSFLRYM 353


>gi|163744344|ref|ZP_02151704.1| flagellar hook-associated protein [Oceanibulbus indolifex HEL-45]
 gi|161381162|gb|EDQ05571.1| flagellar hook-associated protein [Oceanibulbus indolifex HEL-45]
          Length = 353

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 133/305 (43%), Gaps = 32/305 (10%)

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML----RDSY 121
           L SN+L+ +R    +  L +M+ + Q       +L +  + ++   ++   L    R + 
Sbjct: 68  LTSNALLDRRFLAVETSLGAMRDVGQS------VLEQAFSSDSAGGLSTTYLQQAARTAL 121

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           +  +  A ++D   +L SG  S   PL  +  ++  +         G    N+ + + G 
Sbjct: 122 DQVLERAAVSDSSGFLMSGTRSDTNPLQTWDVQNPNS---------GVSPANAVANVIG- 171

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEY-WANNWSNA-------SDHNIKYRIKDTEGID 233
            +  +  + Q   D +K     FSD     ANN+ N         +  +  R  +T+ + 
Sbjct: 172 GVPATLADVQTAIDGLKA---AFSDTAADPANNFENTFYNGAPTGNPPLTSRTSETQTLT 228

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTD-GARNVLTKKMLSTVQQGLSGIIEQRAVLG 292
            +A  N   +RD+M    + + F   ++ D  AR+    +  S +  GL G+ +     G
Sbjct: 229 QTAQANDPAMRDLMRGLAMLSAFNPSDIPDEAARDAWLSEARSAIGAGLEGLTDLETQTG 288

Query: 293 ISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLS 352
           +    + +     +++   ++  +    GV+Q+ A  +L+ L N++E SY +T +L +LS
Sbjct: 289 LKRGQLADSISAQESRALFLNGEVMNLEGVDQYDAATRLTQLQNQLESSYAVTARLSRLS 348

Query: 353 ILNYL 357
            LNYL
Sbjct: 349 FLNYL 353


>gi|254473339|ref|ZP_05086736.1| flagellar hook-associated protein 3 (HAP3) FlgL, putative
           [Pseudovibrio sp. JE062]
 gi|211957455|gb|EEA92658.1| flagellar hook-associated protein 3 (HAP3) FlgL, putative
           [Pseudovibrio sp. JE062]
          Length = 276

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 101/234 (43%), Gaps = 20/234 (8%)

Query: 134 GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEEN----------SKSLLAGQHL 183
           G Y+F GIN+   P+N + +     +   +Q  Q F   +          +K   AG+  
Sbjct: 53  GVYVFGGINTGTAPVNDFKSLPGGPEVQIEQAFQTFFGHSIDDPATESIPAKGDPAGKDW 112

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           E    +A          +D F  D  W  +WS+A++  +   I++      S + N +  
Sbjct: 113 ETFLDSAG--------FKDIFGAD--WTTHWSSATNEKMTSTIENGVTTTGSGSANEKAF 162

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            ++     I   F   NL   A   +T + ++++  G+   I   A  G  + N+     
Sbjct: 163 GELAEGLSIVAVFGKLNLNTEAEKFITDRAVNSLNSGVDKTIVIEAQNGAIKTNVERTNS 222

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  K ++++  I+    ++++ A  +LS    ++E +Y IT K++ L+I+ YL
Sbjct: 223 DIIAKKDVLNMRINDLENIDENRAAVELSLAQTQLEATYAITAKIKDLNIMKYL 276


>gi|218658935|ref|ZP_03514865.1| flagellar hook-associated protein FlgL [Rhizobium etli IE4771]
          Length = 110

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 4/111 (3%)

Query: 225 RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGI 284
           RI ++E I+ S N N  G+R     +V+ +  L +NL+  A   ++K+ +S   +  SG+
Sbjct: 2   RISNSEVIESSTNANSEGMRYFALASVMTSALLGQNLSTDAMTTVSKQAISYTAKATSGL 61

Query: 285 IEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLI 335
           + Q + LG+S++ + +    L  ++NII   +    GV+ + A    STL+
Sbjct: 62  VTQASQLGLSQERVKKSNDALDAQSNIIKNKLVDLQGVDPYEA----STLV 108


>gi|23005491|ref|ZP_00048278.1| COG1344: Flagellin and related hook-associated proteins
           [Magnetospirillum magnetotacticum MS-1]
          Length = 127

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 64/126 (50%)

Query: 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVL 291
           +  SA+ N    R +    V+ +     + ++ A+   T K++  + QG SG+   +A L
Sbjct: 1   MTTSASANAEPFRKLAMAYVVASAIGLPSFSNEAQEAATGKVMELLSQGSSGLTAMQADL 60

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351
           G S+  I +    +  ++ ++   I     V+   A +++  +  +++MSY +T +L+ L
Sbjct: 61  GRSQSRITDANERMTKQSALLTGQIHDLESVDPAEAKSRVDAITTQMQMSYGLTAQLRSL 120

Query: 352 SILNYL 357
           S++N+L
Sbjct: 121 SLINFL 126


>gi|218678107|ref|ZP_03526004.1| flagellar hook-associated protein FlgL [Rhizobium etli CIAT 894]
          Length = 211

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 19/213 (8%)

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            SN++V  R+  SQ  LSS++     +V  +  L +   D     +       +    ++
Sbjct: 10  SSNAVVELRMDASQTALSSLKDAGDSLVTNMTAL-QASQDTTSIAVTLQTAGATISQLIS 68

Query: 127 FANMTDEGQYLFSGINSSEKPLN--GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
            AN +  G++LF+G N   +PL      T D++     D                G   +
Sbjct: 69  TANTSVNGEFLFAGTNLDSQPLTDQSSTTSDAIVTALGD-------------YATGLGKD 115

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYW---ANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
           V+ +  +++  FI    +    +  W   ++ WS AS  ++  RI  +E I  S N N  
Sbjct: 116 VNELTGEEIGTFITDTVEPMFSESAWTDASSGWSTASSTDMTSRISSSETITSSTNANSE 175

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKML 274
           G+R +   +V+ +   S++L+  A++ +  K +
Sbjct: 176 GMRYLALASVVVSALFSQDLSADAQSTVASKAI 208


>gi|162147481|ref|YP_001601942.1| flagellar hook-associated protein FlgL [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786058|emb|CAP55640.1| putative flagellar hook-associated protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 358

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 140/328 (42%), Gaps = 23/328 (7%)

Query: 36  GQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVG 95
           GQ+    + L  ++T +  W+    +       NSL  +  + +Q  +S  Q +   ++G
Sbjct: 48  GQARSAAISLAPQITQVAAWQTNVTN-----AQNSLSVQADALTQ-IVSLAQSLSTSLIG 101

Query: 96  PLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPL--NGYFT 153
                + G T ++     AG    +     T  N +D   Y+F+G +S+E P+      T
Sbjct: 102 -----VTGTTTDSAVTATAGEATTALSELATVLNTSDGSGYVFAGKDSTEPPIEDTASVT 156

Query: 154 KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANN 213
             +LA +    ++      ++ +++  Q    ++ N    + F  QL    S D   A  
Sbjct: 157 SGTLATQ-IASIVSSLGSSDASTVIE-QATTAAADNTAGTSVFSSQL--SVSGDAATALQ 212

Query: 214 WS--NASDHNIKYRIKDTEGIDVSANVNMRGIRDIM--FVAVIGTEFLSKNLTDGARNVL 269
            S    S+ + +  I  T+G   S       IRD+M   + V GT  +S   T G  + L
Sbjct: 213 KSVVTGSNTSTEVGIVATQGTAASLTSTGSPIRDLMRDMMIVSGTSGMSST-TSGYSD-L 270

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
             ++ S++Q  +S + +  + +G ++ N+      L + N  +   +  +   +      
Sbjct: 271 VSQVYSSLQTTISQLTDMESSVGTTQDNLTANATLLTSMNTALTGQLGDARDADLAAVAV 330

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           Q S+L   ++ SYM+ + ++ L++ NY+
Sbjct: 331 QSSSLDTSLKASYMLVSDMKSLTLANYI 358


>gi|209545590|ref|YP_002277819.1| flagellar hook-associated protein FlgL [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533267|gb|ACI53204.1| putative flagellar hook-associated protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 358

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 140/328 (42%), Gaps = 23/328 (7%)

Query: 36  GQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVG 95
           GQ+    + L  ++T +  W+    +       NSL  +  + +Q  +S  Q +   ++G
Sbjct: 48  GQARSAAISLAPQITQVAAWQTNVTN-----AQNSLSVQADALTQ-IVSLAQSLSTSLIG 101

Query: 96  PLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPL--NGYFT 153
                + G T ++     AG    +     T  N +D   Y+F+G +S+E P+      T
Sbjct: 102 -----VTGTTTDSAVTATAGEATTALSELATVLNTSDGSGYVFAGKDSTEPPIEDTASVT 156

Query: 154 KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANN 213
             +LA +    ++      ++ +++  Q    ++ N    + F  QL    S D   A  
Sbjct: 157 SGTLATQ-IASIVSSLGSSDASTVIE-QATTAAADNTAGTSVFSSQL--SVSGDAATALQ 212

Query: 214 WS--NASDHNIKYRIKDTEGIDVSANVNMRGIRDIM--FVAVIGTEFLSKNLTDGARNVL 269
            S    S+ + +  I  T+G   S       IRD+M   + V GT  +S   T G  + L
Sbjct: 213 KSVVTGSNTSTEVGIVATQGTAASLTSTGSPIRDLMRDMMIVSGTSGMSST-TSGYSD-L 270

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
             ++ S++Q  +S + +  + +G ++ N+      L + N  +   +  +   +      
Sbjct: 271 VSQVYSSLQTTISQLTDMESSVGTTQDNLTANATLLTSMNTALTGQLGDARDADLAAVAV 330

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           Q S+L   ++ SYM+ + ++ L++ NY+
Sbjct: 331 QSSSLDTSLKASYMLVSDMKSLTLANYI 358


>gi|296531744|ref|ZP_06894569.1| possible flagellar hook-associated protein [Roseomonas cervicalis
           ATCC 49957]
 gi|296267927|gb|EFH13729.1| possible flagellar hook-associated protein [Roseomonas cervicalis
           ATCC 49957]
          Length = 363

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 138/359 (38%), Gaps = 55/359 (15%)

Query: 29  LHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQK 88
           L  EM +G+ +D    LG   + + +   +        +S SL  +RL  +Q  L+S+  
Sbjct: 30  LTAEMSSGRKADPARALGVGASLLYKLYGDVQQGEAIRNSTSLAGQRLKAAQEALTSVGG 89

Query: 89  IVQDMVGPLVILLEGKTD---NNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           ++ D + P ++    KTD    N + I A   R+   S     N   +GQ LF G +SS+
Sbjct: 90  LM-DQMSPEIL----KTDALKGNGYTIIASNAREVLGSMTDLLNTHWDGQNLFGGTDSSQ 144

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
            P         LA  +      G L      L A       +++A Q T  I Q +  F+
Sbjct: 145 PP---------LAPSA------GLLAWAQGRLGAAVTAAGGALDAAQATALIGQFDTMFA 189

Query: 206 D---DEYWANNW-----------------SNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           +   D   A ++                    SD     RI   E +  +   +    +D
Sbjct: 190 NVQRDAAGATSFYGLVYRSTSRTDMAGSSDPESDAPSLIRIGAGETLSWNVRADNAAFKD 249

Query: 246 IM--FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN---- 299
                  +      +  L++ AR  L  +    +  G + +     VLG  +  +     
Sbjct: 250 AFKSLALLSLLGAPASQLSEEARTTLLDEAGRLMGSGRAKLTVLAGVLGGKQDRLEKVGE 309

Query: 300 -EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +ER        I D       G + +T   +++TL  ++E +Y IT +L +LS++NYL
Sbjct: 310 IQERAVAAATAQINDLE-----GADYYTVSDRINTLRIQLEATYSITARLSELSLVNYL 363


>gi|294675566|ref|YP_003576181.1| flagellar hook-associated protein FlgL [Rhodobacter capsulatus SB
           1003]
 gi|294474386|gb|ADE83774.1| flagellar hook-associated protein FlgL [Rhodobacter capsulatus SB
           1003]
          Length = 338

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 149/369 (40%), Gaps = 57/369 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVT-------SILEWEQE 58
           +S + +  R N+   +L     +L EE+VTG S D G ++G   T       S++  E  
Sbjct: 9   MSQTYLMRRHNV---QLKTTMSRLSEEVVTGISQDLGTKVGGDFTALAAIDRSMVRGEAY 65

Query: 59  KNHIAERLHSNSLVTKRLS-TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
           K   AE        T  L+ T Q  L ++Q   Q  +G  +I     +  N     A   
Sbjct: 66  KQVAAE--------TDLLAGTQQDALETIQGHAQ-AIGATLISASFASSYNMIESGAQNA 116

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
              +E+ V   N+   G+Y FSG  +  KP+                        ++ ++
Sbjct: 117 EQRFEAVVDALNVNVAGRYAFSGTTTDTKPV-----------------------ASADTI 153

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKF----SDDEYWANNWSNASDHNIKYRIKDTEGID 233
           ++     VS M      D I  ++D F        +    +  +++     R+ +T+   
Sbjct: 154 ISSLEAVVSGMTVA--ADIIAAVDDWFDAAAGGGGFLDQGYLGSANSLSPVRLSETDSAQ 211

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDG---ARNVLTKKMLSTVQQGLSGIIEQRAV 290
           ++       IR+++    +GT  ++++L       R +L +     +      +   RA 
Sbjct: 212 LTITAGDSSIRNMLKGFALGT-LVARDLVPDNIETRALLIRTAGDRITSAEGEMTTLRAG 270

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKS--IGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           LG  E  I++ +   +N   +    I++   IGV+++     L    +++E  Y +T++L
Sbjct: 271 LGTVEAIISDAQT--RNSAQVTALEIARKELIGVDEYETATALEATQSQLETLYTLTSRL 328

Query: 349 QKLSILNYL 357
            +LS+ +YL
Sbjct: 329 TQLSLTDYL 337


>gi|254464892|ref|ZP_05078303.1| flagellar hook-associated protein FlgL family protein
           [Rhodobacterales bacterium Y4I]
 gi|206685800|gb|EDZ46282.1| flagellar hook-associated protein FlgL family protein
           [Rhodobacterales bacterium Y4I]
          Length = 335

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 139/344 (40%), Gaps = 37/344 (10%)

Query: 21  ELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQ 80
           EL ++   L EE  TG+SS+   +LG   T + + E   N I   + +NS V    +T+Q
Sbjct: 21  ELKENVTTLSEEFATGKSSNLSERLGGDFTYLADLESSLNRIGSYMVANSEVRLFATTTQ 80

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
             L  +   V+ M    ++ L    D           +    S +   N +  G+ +F+G
Sbjct: 81  GSLDKVHSQVEAMRND-ILRLSPALDTENAQQFGSQAKQRLASAINLMNTSVGGRTIFAG 139

Query: 141 INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200
             +  KPLN                       N+ +L+     EVS +      D I+++
Sbjct: 140 TATDTKPLN-----------------------NTSTLMTAVLAEVSGLTTSN--DIIQEV 174

Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV-----NMRGIRDIMFVAVIGTE 255
           +D F D   +       S  +++  +   EG  V+  +     N++       +  +  E
Sbjct: 175 KDWFDDPAGFDAVMYRGSTTSLQ-PVTVGEGEQVTLGIRADDENLKHALQSYVITALADE 233

Query: 256 FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
             S  L++  +  L  K  S + +    +I+ +A +G  E  +  E V  +N+ +     
Sbjct: 234 -PSLGLSEDVQIDLVIKASSELTESADRLIDLQADVGFIEGQL--EAVNTRNEASKTSLS 290

Query: 316 ISKS--IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           I K+  +  + +  + +L     ++E  Y IT +  +LS+L Y+
Sbjct: 291 IVKNKLVSADPYETYTRLQEAQTQLEGLYTITARSSQLSLLKYI 334


>gi|83955133|ref|ZP_00963789.1| flagellar hook-associated protein [Sulfitobacter sp. NAS-14.1]
 gi|83840462|gb|EAP79635.1| flagellar hook-associated protein [Sulfitobacter sp. NAS-14.1]
          Length = 359

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 74/363 (20%), Positives = 163/363 (44%), Gaps = 18/363 (4%)

Query: 5   GISTSS-----IFERMNI--LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQ 57
           GIS+ S     +F R N+   T EL +    + EE+ TG+ +D    LG R  S+++   
Sbjct: 4   GISSFSSFQFNLFNRQNVQRTTLELQR----VSEEVSTGKKADIYTDLGPRAASVMKLHG 59

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
            + +    + SN ++  +L    A + + +  VQ ++     L+    D N   +     
Sbjct: 60  REANTQTFMTSNDVLASKLDAMLASVDAARTQVQSVLES--ALVNATRDGNGAEVLQMQA 117

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
           R + ES V+  N +  G+ LFSG+ S++  L  +    +   +S   +++          
Sbjct: 118 RAALESLVSTMNTSYNGENLFSGLESNKTSLTRWPETSADTGRSPQSVVEEIFGAGPTDP 177

Query: 178 LAGQHL--EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
            + Q +  ++ ++   Q  D  +  +  F        + S A    I   +   + +   
Sbjct: 178 ASAQAIADQLEAVFNSQDADASRNFQGTFYQGSP-ERDASGAETKQISAWVNTGQEVVYG 236

Query: 236 ANVNMRGIRDIM-FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGIS 294
              N +  RD    +A++    +S+ + + A +    +++ ++     G+++  A +G +
Sbjct: 237 VRANDQSFRDAYKGLAMLAVTDVSQ-MDEAAYSTWMSEVVDSLSASQEGMLDISARIGFN 295

Query: 295 EKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSIL 354
           ++ + + +  L + + +  T IS    V+ + A  ++++L  +++ SY ++++L  LSIL
Sbjct: 296 QEIVEKTQTQLTDLSLVQRTQISNYESVDPYEAITRMNSLETQLQASYQVSSRLSSLSIL 355

Query: 355 NYL 357
           NYL
Sbjct: 356 NYL 358


>gi|163794164|ref|ZP_02188137.1| flagellar hook-associated protein [alpha proteobacterium BAL199]
 gi|159180778|gb|EDP65297.1| flagellar hook-associated protein [alpha proteobacterium BAL199]
          Length = 339

 Score = 44.3 bits (103), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 123/291 (42%), Gaps = 32/291 (10%)

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
           + +T  A L +   I QD+   +   +EG  DN+   + A     + +      N T  G
Sbjct: 73  KTTTIDASLVTFTDITQDLRKKMYEQVEGLFDNSSLAL-ATYANAAIDQLTNLLNQTSGG 131

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           Q+LF+G ++  +PL       + +K ++   + G L     +L AG             T
Sbjct: 132 QFLFNGADTDTQPL----LSATASKAAYAAHVFGALGPGQPALSAGAG----------AT 177

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN--VNMRGIRDIMFV--A 250
           D I  +ED FS D  W NN +  +  +++ RI   +G+DVS     N     ++  V  A
Sbjct: 178 DVIAFVEDFFSTDANW-NNVTAPAPGSLQARID--KGVDVSFGELGNDDAFEEVFEVLYA 234

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQG---LSGIIEQRAVLGIS-EKNINEERVFLQ 306
                F + +  D     L    L  V+     ++ ++ Q  V+G   E N+   R  L 
Sbjct: 235 FANANFQAGD--DTEYQALVTWGLGKVEAAFDLINDMVGQNGVIGAQLETNLEAHREGL- 291

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +++T +     V+ + A +   TL  ++E S+  T  L+ LS+  Y+
Sbjct: 292 ---TLLETQVLDIEDVDAYEAVSLFQTLQAQLESSFQTTALLRNLSLTKYI 339


>gi|126730123|ref|ZP_01745935.1| flagellar hook-associated protein FlgL family protein [Sagittula
           stellata E-37]
 gi|126709503|gb|EBA08557.1| flagellar hook-associated protein FlgL family protein [Sagittula
           stellata E-37]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 151/364 (41%), Gaps = 72/364 (19%)

Query: 22  LNKDSVKLHEEM-------VTGQSSDYGLQLGARVTSILEWEQEKNHI-AERLHSN--SL 71
           L  + V+L EEM        TG + D G  L   +T +   ++    + A R+++   + 
Sbjct: 13  LRTNQVRLREEMDKLAVEVSTGFAKDPGQHLNGDLTGLQAIDRSLARLEAYRINTTEATF 72

Query: 72  VTKRLSTSQAHLSSMQKIVQDMV--------GPLVILLEGKTDNNKFPINAGMLRDSYES 123
           +T  + T+   + +  +IV   +        GPL+  +    +N    I  G+       
Sbjct: 73  LTSSMQTTLDEIQTRSEIVSQTLISAELTPNGPLLKTMSEDAENALGQILNGL------- 125

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
                N +  G++LFSG  +  + + G   +D L               ++++ LAG   
Sbjct: 126 -----NRSVAGRFLFSGTATDRRAVQGI--EDLLT--------------DARASLAG--- 161

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNI-KYRIKDTEGIDVSANVNMRG 242
                 A  MTD    L+  F     +       S+  I   R+ +TE    +ANV++R 
Sbjct: 162 ------ATTMTDVETALDTFFGAGGTYETVTYEGSNTGISPLRLSETE----TANVDIRA 211

Query: 243 IRDIMFVAVIGTEFLSKNLTD---GARNVLTKKMLSTVQQGLSG----IIEQRAVLGISE 295
             D +F  V+    ++   TD   G    L  +ML+   + L G    ++E RA LG  E
Sbjct: 212 T-DPVFREVLKPLIMATLATDASLGFSQDLQVEMLAASGRNLLGAQQNVVELRAGLGALE 270

Query: 296 KNINEERVFLQNKNNIIDTYISKS--IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + E     +N      T +++   +GV+Q+   ++  ++  ++E  Y IT + Q+LS+
Sbjct: 271 ARVEETNT--RNAAERTATSMARLDLVGVDQYETASRYESIRAQLESLYAITVRSQRLSL 328

Query: 354 LNYL 357
             +L
Sbjct: 329 AEFL 332


>gi|74317645|ref|YP_315385.1| flagellar hook-associated protein FlgL [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057140|gb|AAZ97580.1| flagellin, flagellar hook-associated protein 3 FlgL [Thiobacillus
           denitrificans ATCC 25259]
          Length = 300

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 1/145 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST ++FE       EL  D VK  +++ TG+               LE  Q ++  ++ 
Sbjct: 3   ISTQTLFEAGAARLSELQSDMVKTQQQISTGRRVLTPADDPVAAARALEVTQSQSMNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L+  +  L+ + +++QD+   +V    G   + +    A  LR  +E  +
Sbjct: 63  GVNRDYAKSSLAAVEGSLTGVTELLQDVKTTIVAAGNGTLGDMERGYMATELRGRFEQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN 149
             AN  D +G YLFSG  ++  P +
Sbjct: 123 GMANSRDAQGNYLFSGFQTATPPFS 147


>gi|54308104|ref|YP_129124.1| flagellar hook-associated protein FlgL [Photobacterium profundum
           SS9]
 gi|46912530|emb|CAG19322.1| hypothetical flagellar hook-associated protein FlgL [Photobacterium
           profundum SS9]
          Length = 396

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTS---ILEWEQEKNHI 62
           IS  + F   N ++ ++N+  +K+ E      S    L  G    +   I  ++Q+   I
Sbjct: 2   ISRIANFHHYNAVSNDMNRQQIKVQENQQQLASGKRLLTAGDDPVASIYIQNFDQQNTQI 61

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            + + S ++   RL+  +A ++ ++ ++ D     ++++ G   ++    +   ++  ++
Sbjct: 62  DQSVKSITMARNRLNNEEAAITEVENLLDDAKRKSMMMVNGSLSSDDRVAHKQDMQGIFD 121

Query: 123 SFVTFANMTDE-GQYLFSGINSSEKPL 148
           SF+   N  DE G Y+F+G   S++P 
Sbjct: 122 SFMNLVNSRDESGNYVFAGTQYSQQPF 148


>gi|209963557|ref|YP_002296472.1| flagellar hook-associated protein 3 FlgL, putative [Rhodospirillum
           centenum SW]
 gi|209957023|gb|ACI97659.1| flagellar hook-associated protein 3 FlgL, putative [Rhodospirillum
           centenum SW]
          Length = 355

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 65/373 (17%), Positives = 147/373 (39%), Gaps = 34/373 (9%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  + IST ++  +   L + +  D   L  E+ TG+ SD    +G+R   +L+    + 
Sbjct: 1   MSVSSISTMALARQTRNLVRTMQSDMHTLELEIGTGKKSDVAGSVGSRAALLLDLRNARQ 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
             AE   S    + RL+  Q  L  ++      V  L + + G               ++
Sbjct: 61  TTAEYRQSIQTQSSRLTLMQEALDKVRGSATQ-VRDLALSVSGSGVGAAAATIDEAALNA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            ++  +  N +  G+YLF+G     +P+              D +         KS+L+ 
Sbjct: 120 IQTLSSMFNSSQSGRYLFAGTRFDTRPMQPPTETAPSGIAPLDAV---------KSVLSS 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSD--------DEYWANNWSNASDHNIKYRIKDTEGI 232
                ++ +     +    L   FSD         E ++  +   S   ++ R  +   +
Sbjct: 171 LGPTSTAADVDAALNGPNGLSSIFSDTYGGGPAAPENFSKTFFLGSTTQVQGRAGEDLPV 230

Query: 233 DVSANVNMRGIRDIM----FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
             +       +R ++     +A + +E +S      A   +  +    + Q    +I+ +
Sbjct: 231 TYACTAGDEPVRTLLKGLYLLAAVPSESVSTE----AYQRIADQGWRLITQATDELIDTQ 286

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIG----VEQHTAHAQLSTLINKIEMSYMI 344
            ++G+ E+ +         ++ + D  +SK I      + +    +L+TL  ++E ++ +
Sbjct: 287 GIIGLQEELLKRA----DERHEVEDGLLSKQITQMEMADPYETGLRLNTLETQLEATFAM 342

Query: 345 TTKLQKLSILNYL 357
           T+++ KLS++++L
Sbjct: 343 TSRISKLSLIDFL 355


>gi|218671599|ref|ZP_03521269.1| flagellar hook-associated protein FlgL [Rhizobium etli GR56]
          Length = 73

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 43/71 (60%)

Query: 287 QRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITT 346
           Q + LG+S++ + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +
Sbjct: 3   QASQLGLSQERVKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVS 62

Query: 347 KLQKLSILNYL 357
           K+Q+LS++NYL
Sbjct: 63  KIQQLSLVNYL 73


>gi|83944167|ref|ZP_00956623.1| flagellar hook-associated protein [Sulfitobacter sp. EE-36]
 gi|83845034|gb|EAP82915.1| flagellar hook-associated protein [Sulfitobacter sp. EE-36]
          Length = 359

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 73/363 (20%), Positives = 163/363 (44%), Gaps = 18/363 (4%)

Query: 5   GISTSS-----IFERMNI--LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQ 57
           GIS+ S     +F R N+   T EL +    + EE+ TG+ +D    LG R  S+++   
Sbjct: 4   GISSFSSFQFNLFNRQNVQRTTLELQR----VSEEVSTGKKADIYADLGPRAASVMKLHG 59

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
            + +    + SN ++  +L    A + + +  VQ ++     L+    + N   +     
Sbjct: 60  REANTQTFMTSNDVLASKLDAMLASVDAARTQVQSVLES--ALVNATRNGNGAEVLQMQA 117

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
           R + ES V+  N +  G+ LFSG+ S++  L  +    +   +S   +++          
Sbjct: 118 RAALESLVSTMNTSYNGENLFSGLESNKTSLTRWPETSADTGRSPQSVVEEIFGTGPTDP 177

Query: 178 LAGQHL--EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
            + Q +  ++ ++   Q  D  +  +  F        + S A    I   +   + +   
Sbjct: 178 ASAQAIADQLETVFNSQDADASRNFQGTFYQGSP-ERDASGAETKQISAWVNTGQEVVYG 236

Query: 236 ANVNMRGIRDIM-FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGIS 294
              N +  RD    +A++    +S+ + + A +    +++ ++     G+++  A +G +
Sbjct: 237 VRANDQSFRDAYKGLAMLAVTDVSQ-MDEAAYSTWMSEVVDSLSASQEGMLDISARIGFN 295

Query: 295 EKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSIL 354
           ++ + + +  L + + +  T IS    V+ + A  ++++L  +++ SY ++++L  LSIL
Sbjct: 296 QQIVEKTQTQLTDLSLVQRTQISNYESVDPYEAITRMNSLETQLQASYQVSSRLSSLSIL 355

Query: 355 NYL 357
           NYL
Sbjct: 356 NYL 358


>gi|90411012|ref|ZP_01219026.1| flagellar hook-associated protein [Photobacterium profundum 3TCK]
 gi|90328225|gb|EAS44536.1| flagellar hook-associated protein [Photobacterium profundum 3TCK]
          Length = 396

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTS---ILEWEQEKNHI 62
           IS  + F   N ++ ++N+  +K+ E      S    L  G    +   I  ++Q+   I
Sbjct: 2   ISRIANFHHYNSVSNDMNRQQIKVQENQQQLASGKRLLTAGDDPVASIYIQNFDQQNTQI 61

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            + + S ++   RL+  +A ++ ++ ++ D     ++++ G   ++    +   ++  ++
Sbjct: 62  DQSVKSITMARNRLNNEEAAITEVENLLDDAKRKSMMMVNGSLSSDDRVAHKQDMQGVFD 121

Query: 123 SFVTFANMTDE-GQYLFSGINSSEKPL 148
           SF+   N  DE G Y+F+G   S++P 
Sbjct: 122 SFMNLVNSRDESGNYVFAGTQYSQQPF 148


>gi|299822282|ref|ZP_07054168.1| flagellar hook-associated protein 3 [Listeria grayi DSM 20601]
 gi|299815811|gb|EFI83049.1| flagellar hook-associated protein 3 [Listeria grayi DSM 20601]
          Length = 291

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 11/143 (7%)

Query: 13  ERMNILTKELNKDSV---KLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSN 69
           ++ N +  ++N  +V   K   ++ TG+  +   +  A  T +L +    NHI  +L+  
Sbjct: 7   QQTNTIINQINNANVLMGKYQTQVSTGKRYETMSENPAATTQVLSY----NHILNQLNRE 62

Query: 70  ----SLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               S     L+++   LSSM   +  +   ++  L G TD       A  ++   +S V
Sbjct: 63  QKDVSDAKSLLTSADTSLSSMNDAMSRINAIVLQSLNGTTDEKNMNQAAEEVKGLLQSLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPL 148
           +  N  D+G+Y+FSG +++ KP 
Sbjct: 123 SLGNTDDDGRYIFSGSSTNTKPF 145


>gi|148258438|ref|YP_001243023.1| hypothetical protein BBta_7240 [Bradyrhizobium sp. BTAi1]
 gi|146410611|gb|ABQ39117.1| hypothetical protein BBta_7240 [Bradyrhizobium sp. BTAi1]
          Length = 588

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 88/210 (41%), Gaps = 21/210 (10%)

Query: 157 LAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSN 216
           LA  S  +  Q F    S   LA + ++ S+      T    Q+    +   Y     + 
Sbjct: 390 LAASSTVRATQDFFAGQSAPGLAARRIDFSAA-----TPAYAQIASTSTVTWYRGEGSTA 444

Query: 217 ASDHNIKYRIKDTEGIDVSANVNMRGIRDIMF----VAVIGTEFLSKNLTDGARNVLTKK 272
           A    +  +   T  + V A  N   +R  +     VA  G+   +   T+ ++++ ++ 
Sbjct: 445 APREAVVVQASSTSALAVGARANEDALRSALAGFASVAASGSGTTTAASTERSKSLASRA 504

Query: 273 M-LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID----TYISKSIGVEQHTA 327
           + L   ++ + GI       G+++  ++E     Q++N  I     T + +         
Sbjct: 505 LALLPTREAVDGITND---FGLAQAALSEA----QSENKAIRAIHRTQLDRLESAPAEAV 557

Query: 328 HAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            A+L +L N+++ SY +T  + KLS++NYL
Sbjct: 558 VAELVSLQNRLQASYQVTAMISKLSLVNYL 587


>gi|289433984|ref|YP_003463856.1| flagellar hook-associated protein FlgL, putative [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170228|emb|CBH26768.1| flagellar hook-associated protein FlgL, putative [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|313634356|gb|EFS00953.1| flagellar hook-associated protein 3 [Listeria seeligeri FSL N1-067]
 gi|313639050|gb|EFS04038.1| flagellar hook-associated protein 3 [Listeria seeligeri FSL S4-171]
          Length = 291

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQ 135
           L+T++  LSSM   +  +   ++  + G +D N    +A  ++      ++ AN  D+G+
Sbjct: 73  LNTAETSLSSMTTSMNRVNALVLQAINGTSDKNNMSQSAEEIKGLLGVLLSVANAEDDGR 132

Query: 136 YLFSGINSSEKPLNGYFTKD 155
           Y+FSG ++S KP    FT D
Sbjct: 133 YVFSGSSTSVKP----FTTD 148


>gi|167623368|ref|YP_001673662.1| flagellar hook-associated protein FlgL [Shewanella halifaxensis
           HAW-EB4]
 gi|167353390|gb|ABZ76003.1| flagellar hook-associated protein 3 [Shewanella halifaxensis
           HAW-EB4]
          Length = 396

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 11/165 (6%)

Query: 6   ISTSSIF-ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE 64
           IST+ +F + +N +T++ ++ S ++ E++ TG+  +           I    Q+ + + +
Sbjct: 3   ISTAQMFHQNINSVTQKQSQTS-QIIEQLSTGKRVNTAGDDPVAAAGINNLNQKNSVVDQ 61

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGK-TDNNKFPINAGMLRDSYES 123
            L +      RLS S++ L S   +   +   ++  + G  TD+++  + A  +R S E 
Sbjct: 62  FLKNIDYAKNRLSISESKLGSAATLASSVREQVLRAVNGSLTDSDRQTV-ADEMRGSLEE 120

Query: 124 FVTFANMTDE-GQYLFSGINSSEKPL------NGYFTKDSLAKKS 161
            +  AN  DE G YLF G N+  +P       N  +  DS  ++S
Sbjct: 121 LMAIANSKDESGNYLFGGFNTGSQPFEFDASGNAVYHGDSGVRES 165


>gi|315301956|ref|ZP_07872953.1| flagellar hook-associated protein 3 [Listeria ivanovii FSL F6-596]
 gi|313629674|gb|EFR97810.1| flagellar hook-associated protein 3 [Listeria ivanovii FSL F6-596]
          Length = 215

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQ 135
           L+T++  LSSM   +  +   ++  + G +D N    +A  ++      ++ AN  D+G+
Sbjct: 73  LNTAETSLSSMTTSMNRVNALVLQAINGTSDKNNMSQSAEEIKGLLGVLLSVANAEDDGR 132

Query: 136 YLFSGINSSEKPLNGYFTKD 155
           Y+FSG ++S KP    FT D
Sbjct: 133 YVFSGSSTSVKP----FTTD 148


>gi|187478192|ref|YP_786216.1| flagellar hook-associated protein 3 [Bordetella avium 197N]
 gi|115422778|emb|CAJ49306.1| flagellar hook-associated protein 3 [Bordetella avium 197N]
          Length = 410

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 13/150 (8%)

Query: 6   ISTSSIFERMNILTKELNKDSV--KLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEK 59
           +STS I++  N L   LN+++   +L E++ +G+     SD  L     V         K
Sbjct: 3   LSTSMIYQ--NGLNGILNQEAALSRLQEQLASGKRVLTPSDDPLAASLAVNVAQTASMNK 60

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
           N+ A R    + + + L   +  LSS    +QD++  +V    G   +      + +L+ 
Sbjct: 61  NYSANR----ATLKQSLGAEENALSSAVTTLQDVMKRVVEAGNGTMSDADRQTLSNVLKG 116

Query: 120 SYESFVTFANMTD-EGQYLFSGINSSEKPL 148
           + +  ++ AN TD  GQYLFSG   + +P 
Sbjct: 117 ARDQLLSLANSTDGNGQYLFSGYQGNTQPF 146


>gi|114798459|ref|YP_758979.1| putative flagellar hook-associated protein FlgL [Hyphomonas
           neptunium ATCC 15444]
 gi|114738633|gb|ABI76758.1| putative flagellar hook-associated protein FlgL [Hyphomonas
           neptunium ATCC 15444]
          Length = 325

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 66/326 (20%), Positives = 137/326 (42%), Gaps = 46/326 (14%)

Query: 29  LHEEMVTGQSSDYGLQLGARV-------TSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
           + +E VTGQ +D    LG R+        ++L+ E ++  +  R     L  + L+  Q 
Sbjct: 28  VSQESVTGQYADLTKHLGGRIGDAMISDKALLDIEHQRGLLGVREGRLDLTQQSLAGVQE 87

Query: 82  HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141
            +S ++  VQ +    V  + GK   ++    A  L D + +     N     ++LFSG 
Sbjct: 88  RISGLE--VQMLTALGVGDVPGKDLVSRDAKAA--LSDVFSAL----NSRHGDRFLFSGD 139

Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201
            ++ +P +           + DQ+L    +  S ++ A               DF  QL+
Sbjct: 140 ETATQPFS-----------NTDQLLADIRQIASTAIDA--------------ADFEVQLD 174

Query: 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
           D F   +     W   S +       D + +  +    +  I  +  +A+ G+      L
Sbjct: 175 DYF---QSPTGGW-QTSIYGGTSLTSDQDSVTATDPAIVEIISGLAVMAISGSADNLTLL 230

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
           TD     + ++    +  G S ++  RA +GI ++ + + +  L  +  I+++  +  +G
Sbjct: 231 TDFPE--IVRESAERIGTGTSALVNLRADVGIIQERVAKAKEALDTEETILNSVHNNIVG 288

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTK 347
            +Q+ A ++L  L   +E +Y++T++
Sbjct: 289 RDQYDAASELKQLEASLEAAYVLTSR 314


>gi|254443148|ref|ZP_05056624.1| flagellar hook-associated protein 3 [Verrucomicrobiae bacterium
           DG1235]
 gi|198257456|gb|EDY81764.1| flagellar hook-associated protein 3 [Verrucomicrobiae bacterium
           DG1235]
          Length = 303

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 5/131 (3%)

Query: 20  KELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTS 79
           + + KD   L+E++ TGQ      +  A    IL+ ++EK+ I +    N+   + ++ +
Sbjct: 17  QRVTKDMNMLNEQVATGQRISKVSEDSASANRILDMQEEKHRITQ-FSKNAARAQNINNT 75

Query: 80  QAHLSSMQKIVQ--DMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
              +S +Q  +Q  D VG L  L +G    +     A  + +  +  +  AN    G+Y+
Sbjct: 76  T--ISQLQNFIQISDRVGELATLADGLKGADGMRAYAEEVDELIKHAMQSANAKFNGEYI 133

Query: 138 FSGINSSEKPL 148
           F G++S  +P 
Sbjct: 134 FGGVDSGTEPF 144


>gi|260950261|ref|XP_002619427.1| hypothetical protein CLUG_00586 [Clavispora lusitaniae ATCC 42720]
 gi|238846999|gb|EEQ36463.1| hypothetical protein CLUG_00586 [Clavispora lusitaniae ATCC 42720]
          Length = 603

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 4/131 (3%)

Query: 91  QDMVGPLVILLEGKTDNNKFP-INAGMLRDSYESFVT-FANMTDEGQYLFSGINSSEKPL 148
           QD + P      G     +FP I+ G L DSY   V  F N   + Q+L    NSS+  +
Sbjct: 289 QDPINPFTFQSPGFNGTCQFPQISNGGLNDSYYHGVDLFTNYASKLQFLPQEYNSSQ--V 346

Query: 149 NGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDE 208
             Y T + +  +    ++ G   ENS   +  Q + V S+  Q   D     +    ++ 
Sbjct: 347 QYYVTSNVITSQVAGALIAGMYPENSNVTVNIQRVAVDSLEPQYTCDGAVNTKASIYEEP 406

Query: 209 YWANNWSNASD 219
            W  + + ++D
Sbjct: 407 EWVAHLNRSAD 417


>gi|255729162|ref|XP_002549506.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240132575|gb|EER32132.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 491

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 14/187 (7%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
             SIFE ++IL KE  +D     E+++     DY  QLG     ++E+ +++N+IA+  H
Sbjct: 218 VQSIFEYVDILIKEPPRDDA--FEDVIERFMIDYPDQLGKLYIKLIEFFKKRNNIAKIRH 275

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
             +   K+  T    +      ++     L+ L E   ++N          D +E  +  
Sbjct: 276 YYNKGIKQCKTLSDFVLIYDSYLEFEEDQLIKLAEKDPESNLL----SYFMDEFEELINN 331

Query: 128 ANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSS 187
             M      L   IN     L+ +F +  L K   ++++Q   E    ++ +   L+V+S
Sbjct: 332 RKMLINDTLLRQNIND----LDAWFARFDLVKDDLNKLIQTLTE----AIRSINPLKVTS 383

Query: 188 MNAQQMT 194
           +   ++ 
Sbjct: 384 VKDHKLC 390


>gi|91217388|ref|ZP_01254348.1| hypothetical protein P700755_14585 [Psychroflexus torquis ATCC
           700755]
 gi|91184496|gb|EAS70879.1| hypothetical protein P700755_14585 [Psychroflexus torquis ATCC
           700755]
          Length = 211

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 17/121 (14%)

Query: 79  SQAHLSSMQKIVQDMVGPLVI---LLEGKTDNNKFPINAGMLRDSYESFVTFANMT---- 131
           S  HL S   ++  M+ PL +     E   DN +F +N       +ESF+  A+ T    
Sbjct: 49  SVIHLGSNPPMLSFMLRPLTVDRDTYENLKDNKQFTVN-----HIHESFIDKAHQTSANY 103

Query: 132 DEGQYLFSGINSSE---KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG--QHLEVS 186
           DEG   F  +  SE   K     F K+S+ K   + + + F+EEN   L+ G  QHL   
Sbjct: 104 DEGISEFKEVGLSEEYIKDFKAPFVKESVIKMGCEFINEYFIEENGCRLIIGEIQHLLFP 163

Query: 187 S 187
           S
Sbjct: 164 S 164


>gi|90577351|ref|ZP_01233162.1| flagellar hook-associated protein [Vibrio angustum S14]
 gi|90440437|gb|EAS65617.1| flagellar hook-associated protein [Vibrio angustum S14]
          Length = 299

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 10/109 (9%)

Query: 52  ILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGK---TDNN 108
           +L  ++E + I++   + S V   LS+ + HL +    ++DM   L++   G     D  
Sbjct: 49  LLNLDRENSAISQYQDNISNVKTALSSQEVHLMAASDTLKDMRDTLLLASNGAISDADRE 108

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS-----SEKPLNGYF 152
            +      LRD++ S  +F    +EG YLFSG  S     + +P  GY 
Sbjct: 109 SYANKLVSLRDAFMS--SFNVQDEEGNYLFSGTQSDVPAITAQPAGGYI 155


>gi|89072307|ref|ZP_01158886.1| flagellar hook-associated protein [Photobacterium sp. SKA34]
 gi|89051839|gb|EAR57291.1| flagellar hook-associated protein [Photobacterium sp. SKA34]
          Length = 299

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 10/109 (9%)

Query: 52  ILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGK---TDNN 108
           +L  ++E + I +   + S V   LS+ + HL +    ++DM   L++   G     D  
Sbjct: 49  LLNLDRENSAINQYQDNISNVKTALSSQEVHLMAASDTIKDMRDSLLLASNGALSDADRE 108

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS-----SEKPLNGYF 152
            +      LRD++ S  +F    +EG YLFSG  S     + +P  GY 
Sbjct: 109 SYANKLVSLRDAFMS--SFNVQDEEGNYLFSGTQSDVPAITSQPAGGYI 155


>gi|315281369|ref|ZP_07870007.1| flagellar hook-associated protein 3 [Listeria marthii FSL S4-120]
 gi|313614986|gb|EFR88492.1| flagellar hook-associated protein 3 [Listeria marthii FSL S4-120]
          Length = 291

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 94  VGPLVI-LLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYF 152
           V  LV+  + G +D N    +A  ++   +  V+ AN  D+G+Y+FSG ++S KP    F
Sbjct: 90  VNALVLQAINGTSDKNNMSQSAEEIKGLLDVLVSVANAEDDGRYVFSGSSTSVKP----F 145

Query: 153 TKD 155
           T D
Sbjct: 146 TTD 148


>gi|116872095|ref|YP_848876.1| flagellar hook-associated protein FlgL [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116740973|emb|CAK20093.1| flagellar hook-associated protein FlgL, putative [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 291

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 94  VGPLVI-LLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYF 152
           V  LV+  + G +D N    +A  ++   +  V+ AN  D+G+Y+FSG ++S KP    F
Sbjct: 90  VNALVLQAINGTSDKNNMSQSAEEIKGLLDVLVSVANAEDDGRYVFSGSSTSVKP----F 145

Query: 153 TKD 155
           T D
Sbjct: 146 TTD 148


>gi|37680673|ref|NP_935282.1| flagellar capping protein [Vibrio vulnificus YJ016]
 gi|37199422|dbj|BAC95253.1| flagellar hook-associated protein FlaH [Vibrio vulnificus YJ016]
          Length = 701

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 13/109 (11%)

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGM------LRDSYESFVTFANMTDEG 134
           A LSS   I++D +  + + L+G T  NK P   G+      +RD  E+FV   N   + 
Sbjct: 477 AQLSSNNNIIEDAIEGVDLALKGVTPKNKAPAEIGVEYDRQSVRDDIETFVAAYNQFYQT 536

Query: 135 QYLFSGINSS---EKPLNGYFT---KDSLAKKSFDQMLQGFLEENSKSL 177
               SG++ +   + PL G  T    DS  K  F   ++    EN KSL
Sbjct: 537 SKALSGVDPTTGQKGPLAGDSTVRNADSRLKSVFSTRIEK-APENLKSL 584


>gi|297538903|ref|YP_003674672.1| flagellar hook-associated protein 3 [Methylotenera sp. 301]
 gi|297258250|gb|ADI30095.1| flagellar hook-associated protein 3 [Methylotenera sp. 301]
          Length = 304

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 7/166 (4%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ--SSDYGLQLG-ARVTSILEWEQEKNHI 62
           IST++I++        +  D  KL E++ TG+  SS     +G AR   I   +      
Sbjct: 3   ISTNTIYQAGISRISNIQSDQAKLQEQISTGRRISSPSDDPVGAARALEISAAQSGNAKF 62

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
           A+   +  L   +L+T +++L+S+  ++      LV        + +    A  L+ S +
Sbjct: 63  ADTRQTAQL---KLNTLESNLTSITSLLVSTQSTLVGAGNATLSDTERGFMASELKGSLD 119

Query: 123 SFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ 167
           + +  AN  D  G YL++G  +S  P     +  + A  S  Q+LQ
Sbjct: 120 ALIGLANTQDASGNYLYAGYKTSTVPFVATASGANYAGDSNQQLLQ 165


>gi|320155657|ref|YP_004188036.1| flagellar hook-associated protein FliD [Vibrio vulnificus MO6-24/O]
 gi|319930969|gb|ADV85833.1| flagellar hook-associated protein FliD [Vibrio vulnificus MO6-24/O]
          Length = 700

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 13/109 (11%)

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGM------LRDSYESFVTFANMTDEG 134
           A LSS   I++D +  + + L+G T  NK P   G+      +RD  E+FV   N   + 
Sbjct: 476 AQLSSNNNIIEDAIEGVDLALKGVTPKNKAPAEIGVEYDRQSVRDDIETFVAAYNQFYQT 535

Query: 135 QYLFSGINSS---EKPLNGYFT---KDSLAKKSFDQMLQGFLEENSKSL 177
               SG++ +   + PL G  T    DS  K  F   ++    EN KSL
Sbjct: 536 SKALSGVDPTTGQKGPLAGDSTVRNADSRLKSVFSTRIEK-APENLKSL 583


>gi|315497621|ref|YP_004086425.1| flagellin domain protein [Asticcacaulis excentricus CB 48]
 gi|315415633|gb|ADU12274.1| flagellin domain protein [Asticcacaulis excentricus CB 48]
          Length = 305

 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 26/170 (15%)

Query: 16  NILTKELNKDSV--KLHEEMVTGQSSDYGLQLGARVTS--------ILEWEQEKNHIAER 65
           N++  ++ KD    +L  + V    + YG   GA + +        I  + Q    +++R
Sbjct: 15  NLMQAQIRKDEANNQLSTQKVATDFAGYGR--GAEIIAAYQSSLERITAYSQVAQSVSDR 72

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           L S ++  +R S     +++ +  + D +      L+G T          +L+ SY +F 
Sbjct: 73  LASQNIALERASDG---IATGKDGIMDAIASKS--LDGLTT---------VLQSSYMAFA 118

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSK 175
              N   +G YLF G N SE PL      D     + D    G +++ SK
Sbjct: 119 DGLNYKHQGAYLFGGGNESEAPLAAMSLNDLAGTPAADVFKNGSVKKASK 168


>gi|27365273|ref|NP_760801.1| flagellar capping protein [Vibrio vulnificus CMCP6]
 gi|27361420|gb|AAO10328.1| Flagellar hook-associated protein fliD [Vibrio vulnificus CMCP6]
          Length = 700

 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 13/109 (11%)

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGM------LRDSYESFVTFANMTDEG 134
           A LSS   I++D +  + + L+G T  NK P   G+      +RD  E+FV   N   + 
Sbjct: 476 AQLSSNNNIIEDAIEGVDLALKGVTPKNKAPAEIGVEYDRQSVRDDIETFVAAYNQFYQT 535

Query: 135 QYLFSGINSS---EKPLNGYFT---KDSLAKKSFDQMLQGFLEENSKSL 177
               SG++ +   + PL G  T    DS  K  F   ++    EN KSL
Sbjct: 536 SKALSGVDPTTGQKGPLAGDSTVRNADSRLKSVFSTRIEK-APENLKSL 583


>gi|167567757|ref|ZP_02360673.1| flagellar hook-associated protein FlgL [Burkholderia oklahomensis
           EO147]
 gi|167574708|ref|ZP_02367582.1| flagellar hook-associated protein FlgL [Burkholderia oklahomensis
           C6786]
          Length = 303

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
           +T RL  +++ ++ +   + D+   L+   +G       P  A  L     S V  AN  
Sbjct: 69  LTSRLQLAESRMTGLGTGLGDVRDLLLWASDGSKPPQDLPAIAQTLETLRRSLVATANAK 128

Query: 132 D-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL-EVSSMN 189
           D EG YLFSG     +P+    TK   ++ ++         +  + ++ G  + EV++ N
Sbjct: 129 DGEGNYLFSGTAIKTQPIQYDETKPVGSRYTYAG------NDKQQEVIVGDGMTEVANDN 182

Query: 190 AQQMTDFIKQLE 201
            ++M D + +LE
Sbjct: 183 MKEMADLLNKLE 194


>gi|47208180|emb|CAF89812.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1636

 Score = 36.2 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 69  NSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFA 128
           + ++T   ST  + LS +  + +D+ G L+ L++  +  + +P +   ++D  +S V  +
Sbjct: 627 DDIITDICSTDGSDLSLLSTVCKDVPGDLIFLID--SSGSIYPEDYQKMKDFMKSLVQKS 684

Query: 129 NMTDEGQYLFSGINSSEK----PLNGYFTKDSLAKKSFDQMLQ 167
           N+  +  ++     S+E+    PL  Y+TKD L+ K+ D M Q
Sbjct: 685 NIGKDQVHVGVLQYSTEQKLVFPLIQYYTKDQLS-KAIDDMQQ 726


Searching..................................................done


Results from round 2




>gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040200|gb|ACT56996.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 357

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 357/357 (100%), Positives = 357/357 (100%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN
Sbjct: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
           HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS
Sbjct: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG
Sbjct: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
           QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM
Sbjct: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
           RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE
Sbjct: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL
Sbjct: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357


>gi|163758034|ref|ZP_02165122.1| flagellar hook-associated protein L [Hoeflea phototrophica DFL-43]
 gi|162284323|gb|EDQ34606.1| flagellar hook-associated protein L [Hoeflea phototrophica DFL-43]
          Length = 350

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 110/357 (30%), Positives = 186/357 (52%), Gaps = 7/357 (1%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ IS  +I   M +       +  KL EE+VTG+ +D GL LGA+ ++ +   ++  
Sbjct: 1   MKTSFISNLAIQNSMRMTISRGQVEIQKLQEEVVTGRFADIGLSLGAKTSTSVSHHRDVQ 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +     SN+LVT+RLSTSQ  L++M    Q M+   ++   G  D  K  +    +  S
Sbjct: 61  RLETIQDSNALVTQRLSTSQLSLAAMSDAAQQMLEAFIVA-NGTDDEPKLNVMRRDVEAS 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            E F +  N +  G+YLFSGIN+  KP++ Y    S AK +FD +  G            
Sbjct: 120 LELFTSSINTSVNGEYLFSGINTDVKPVDDYLEPGSGAKAAFDTLFLGHFG------FTQ 173

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                + +   QM +FI  + +       W  NWS+ASD NI  RI+  E +D SAN N 
Sbjct: 174 DDPAAAGITTAQMDNFIDNVLEPEFMGPNWNTNWSSASDTNISSRIRTNEVVDSSANANG 233

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G+R     A+IG E +   ++   R  + +K +    Q ++GI  +R+ LG+SE  + +
Sbjct: 234 TGMRSFALAAIIGIELMDSPISSEVRASVNEKAIEYAGQAVTGIDNERSNLGVSENRVAK 293

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ +  I+  +++   GV+ + A  ++ +L+ ++E SY +T ++Q+L+++NYL
Sbjct: 294 ANEAIEAQVRIMKLHLNDIEGVDGYEASTRMQSLLTQVETSYTLTARIQQLNLMNYL 350


>gi|315122286|ref|YP_004062775.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495688|gb|ADR52287.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 356

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 203/357 (56%), Positives = 259/357 (72%), Gaps = 1/357 (0%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK TG+STSSI +RMNILTK+L+ +  KL  E +TGQ  DYGLQLG++VT I+E+EQEKN
Sbjct: 1   MKITGVSTSSILDRMNILTKDLSNNMEKLQHESITGQCWDYGLQLGSKVTDIIEFEQEKN 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
           H+ ERL  + LV  RLS  Q H+  +  + Q+ +  +  LL+G  D +       +L+DS
Sbjct: 61  HVTERLRGSELVKTRLSILQKHVEKIDDVYQNALQKMP-LLQGNEDKHAIAQVVSLLQDS 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           ++S + F N T+ G+YLFSGIN+SEKPL  YF KDSLAK+SFDQML+ FL+ENSK+L  G
Sbjct: 120 FQSTIEFFNTTEGGKYLFSGINTSEKPLQDYFAKDSLAKQSFDQMLKDFLKENSKNLPVG 179

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
           Q+L+VSSMN  QM DFI +LE+KFS+DEYW+ NWSNASD NIKY   +   ++VS NVN 
Sbjct: 180 QNLDVSSMNGHQMADFINKLEEKFSNDEYWSKNWSNASDQNIKYHSSNAGNLEVSVNVNS 239

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
             IR+ M  +VIG EFL+K+LT  +RNVL  KM S + QG+  +  Q A LG SEK I E
Sbjct: 240 DAIRNFMLFSVIGVEFLNKDLTTESRNVLNNKMASFIGQGVQDLNHQSAFLGFSEKRIEE 299

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           E  FLQ+K NIIDTYI KS+ V+Q+ A   L+ LINKI+MSYMIT KLQKLS+LNYL
Sbjct: 300 EIKFLQDKMNIIDTYILKSVSVDQYKASVGLTELINKIDMSYMITAKLQKLSLLNYL 356


>gi|110632638|ref|YP_672846.1| flagellar hook-associated protein FlgL [Mesorhizobium sp. BNC1]
 gi|110283622|gb|ABG61681.1| flagellar hook-associated protein 3 (HAP3) flgL [Chelativorans sp.
           BNC1]
          Length = 349

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 100/357 (28%), Positives = 176/357 (49%), Gaps = 9/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK + +STS+I + +      +  D VK  +E+ +G+ +D G  LGAR       ++E +
Sbjct: 1   MKVSFVSTSAISQTLRYQMMRMQADLVKNQKELDSGRLADPGATLGARAGFSFSMDREIS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NSL   RL+ +Q +L+ +  I Q+++  L   L G  D     I       +
Sbjct: 61  RLENVIDANSLAANRLTATQNNLTQLTDISQELLATLSAALSGVNDT---SIVKSGATRA 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            ES  +  N    G+YLF+GIN+  KP+N +    S  K  FD     F         A 
Sbjct: 118 LESMTSVLNSNFNGEYLFAGINTDVKPINDFTDPASPNKAQFDAQFLAFFG------FAQ 171

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                S + A Q+ DF+  + +       W++ WS ASD  I  RI   E  + S   N 
Sbjct: 172 NDPAASGITASQIEDFLDTVIEPAFMGTGWSDAWSGASDEKITSRIAANETAETSTTANG 231

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G+R +   + + +EFL   L D AR  L ++  S V + +  I   +A +G++E  + +
Sbjct: 232 AGMRKLAMASAVLSEFLEIPLGDEARQTLYQRTTSLVGEAIPAIASVQAEVGLAETRLQD 291

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               + ++ ++  T+I    GV+ + A  +++ ++ +IE+SY +T+++Q+LS+L YL
Sbjct: 292 ATDRISSQIDLFKTFIRDLEGVDPYEASTRVNEILTQIELSYALTSRIQQLSLLRYL 348


>gi|227820877|ref|YP_002824847.1| flagellar hook-associated protein FlgL [Sinorhizobium fredii
           NGR234]
 gi|227339876|gb|ACP24094.1| predicted flagellar hook-associated protein FlgL [Sinorhizobium
           fredii NGR234]
          Length = 350

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 101/358 (28%), Positives = 190/358 (53%), Gaps = 9/358 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ +S  ++   M +  ++  ++ +KL  E+ TG+ +D GL+LG+     +  ++E  
Sbjct: 1   MKTSFVSNLAVQNAMRLTIQQGQEELLKLQTEVSTGRHADVGLELGSSTARSVNLQRELA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NS+VT+RL++SQ  L +M +  + +   LV   +G    ++  +    +  +
Sbjct: 61  RLETLVDTNSVVTQRLASSQQALGTMAEAAEQVRNTLVTF-KGNDSVDQLSVQKTEIESA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
              F   AN +  G++LF+GIN+  KP   Y    S AK +FD  L  ++  N  +    
Sbjct: 120 MSLFTASANTSFNGEFLFAGINTDVKPFEDYAASGSAAKTTFDDALATYMSANGIA---- 175

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKF-SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
               +S     QM DFI    +   +DD  WA +WS AS  N+  RI  +E +  S N  
Sbjct: 176 ---SMSDFTEAQMEDFITNTLEPLYTDDAQWAGDWSAASSQNMTSRISTSEVVQSSTNAT 232

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
             G R     +VI +E + +++    R  + +  L  V+Q ++G+  +R+ LGISE  + 
Sbjct: 233 TSGFRMFALASVISSELMDEDIGSEVRAYIGEASLGYVEQAITGLTAERSTLGISEARVE 292

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    L+ +  +I+T+I+   GV+ + A  +++TL+ ++E SY +T ++Q+LS++++L
Sbjct: 293 KANTSLEVQIKLINTHITDLEGVDTYDASTRMNTLLTQMETSYTLTGRIQQLSLIDFL 350


>gi|118589964|ref|ZP_01547368.1| flagellar hook-associated protein L [Stappia aggregata IAM 12614]
 gi|118437461|gb|EAV44098.1| flagellar hook-associated protein L [Stappia aggregata IAM 12614]
          Length = 348

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 162/357 (45%), Gaps = 9/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKTT IST ++ +      +       +L  E+ +G+  D GL LG +    +    E +
Sbjct: 1   MKTTYISTITLADASRRQIQNQASLVQRLSIEVSSGRKYDVGLDLGTKTGESVSLRSEFH 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +     +N+L   RL  SQA +  + K  QD +  LV L E     +    +      +
Sbjct: 61  FLNGITDTNALTASRLDVSQAAMGDVLKDAQDFLSTLVALRENSGTADIVKAD---AVGN 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            E   +  N    G ++F+GIN+ ++P   Y    +  K + D          ++  +A 
Sbjct: 118 LELLTSRLNTQLNGNFVFAGINTDQEPFVDYSDPGAPNKLAADAAFL------TEFGIAQ 171

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
            +  VS +    M+ ++    D    D  W  +WS+A+D  +  RI  +E +  S + N 
Sbjct: 172 TNPGVSGITPAAMSTYLNGAFDLMFQDPAWGTSWSSATDSVMVSRISASETVSSSVSANE 231

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
           +  RD+     + ++  +++L      V+  K +  +  G++ I  Q   LG  ++ +  
Sbjct: 232 QAFRDLAAAYTMMSDLGNEDLDPETLKVVVNKAIEKLGTGIAEITSQMGQLGNVQEQVKL 291

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               L+ + +I++  I+    V+      +L+T + ++E +Y +T+++Q+LSILNYL
Sbjct: 292 ASERLKVQTDILNRRINDLENVDPEETAVRLNTALTQLETTYAVTSRMQRLSILNYL 348


>gi|328545489|ref|YP_004305598.1| flagellar hook-associated protein L [polymorphum gilvum
           SL003B-26A1]
 gi|326415230|gb|ADZ72293.1| Flagellar hook-associated protein L [Polymorphum gilvum
           SL003B-26A1]
          Length = 349

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 87/358 (24%), Positives = 164/358 (45%), Gaps = 10/358 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKTT IST ++ +    L  + + +  +L  EM TG+ +D GL LG+R    +    E  
Sbjct: 1   MKTTYISTFTLSDTSRGLLMKQSANLARLQVEMSTGRKADIGLDLGSRTGEAIALRSEHT 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +N+L   RL  +QA L  +    Q  +  LV +      +    +  G  +  
Sbjct: 61  RLNAIIDTNALAASRLDVTQAALGDVLGTAQSFLATLVGVR---DSDGSASVAKGEGQGG 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYF-TKDSLAKKSFDQMLQGFLEENSKSLLA 179
            +  ++  N    G YLF+G+N+   P+  YF T  +  K + D               +
Sbjct: 118 LDLLISRLNTQVNGNYLFAGLNTDVAPMANYFETPAASNKAAVDAAFVARFG------FS 171

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                VS+++A  M DF+        DD  W  +WS+AS+  +  RI  +E + +S + N
Sbjct: 172 QDDPAVSTISAADMDDFLTNFYMPLFDDPAWGADWSSASNDAVSSRISASETLGISVSAN 231

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
               R +  V  +  +  +  L + A   +  K +  + + + G+ +  + +GI+++ ++
Sbjct: 232 ETAFRTLAAVFTMLADLGTGQLGEAAYGAVVDKAIGLLGEAIGGVTDLMSRMGIAQERVS 291

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                L  +  I++  I+    V       +L+T I ++E +Y ++ ++Q+LSILNYL
Sbjct: 292 NASDRLAIQAGILNQRINVLENVNPEETAVRLNTAITQLETTYAVSARIQRLSILNYL 349


>gi|241203126|ref|YP_002974222.1| flagellar hook-associated protein FlgL [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857016|gb|ACS54683.1| flagellar hook-associated 3 family protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 350

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 102/360 (28%), Positives = 175/360 (48%), Gaps = 13/360 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK++ IS+S+I   M +  ++      K   E  TG  +D G+ LG      +++ +E +
Sbjct: 1   MKSSFISSSAIQNAMRLTIRQAQNQMTKATMEATTGVYADIGVSLGGNAARSVDFSREVD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I     SNSLVT R+ +SQ  LS M+ +   +V  L  L +G  D     +       +
Sbjct: 61  RIDSIKSSNSLVTARMESSQLGLSKMKDVGDGLVSKLTAL-QGSHDPGSITVAIQSATSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             + +  AN    G+YLFSGIN+  +PL    T  S A  +         E N+ +    
Sbjct: 120 LSTMMDTANTMVNGEYLFSGINTDVQPLTDKTTATSAAIVT---------ELNTYAAALV 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA---NNWSNASDHNIKYRIKDTEGIDVSAN 237
               VS++   +M+ FI    +       W      WS AS  N+  RI ++E I+ S N
Sbjct: 171 PPKAVSALTGAEMSTFITTKVEPMFSQAAWTDPTTGWSQASSQNMTSRISNSEVIESSTN 230

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N  G+R     +V+ +  L + L+  A + ++K+ +S   +  SG++ Q + LG+S++ 
Sbjct: 231 ANSEGMRYFALASVMTSALLGQGLSSDAMSTVSKQAISYTTKATSGLVTQASQLGLSQER 290

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +K+Q+LS++NYL
Sbjct: 291 VKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQLSLVNYL 350


>gi|222147591|ref|YP_002548548.1| flagellar hook-associated protein FlgL [Agrobacterium vitis S4]
 gi|221734579|gb|ACM35542.1| flagellar hook-associated protein [Agrobacterium vitis S4]
          Length = 355

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 112/362 (30%), Positives = 191/362 (52%), Gaps = 12/362 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ IS+ +I   M +   +  K       E+ TG+ +D G +LGA+ +S ++  ++  
Sbjct: 1   MKTSSISSLTIQNAMRLTISDAQKQMSDAQTEVTTGKYADVGTELGAKTSSAVDLNRDSL 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NS+V+ RL  SQ  L ++      M   LV L    TD+         ++ +
Sbjct: 61  RLQSLMDTNSIVSTRLDASQTALDTIASAATTMQSTLVGL-GTSTDSTTLDSAQKTMKSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKD-----SLAKKSFDQMLQGFLEENSK 175
            +SF+  AN +  G+YLFSGIN+  KP+  Y+  D     + AK++FD +  G+      
Sbjct: 120 MDSFIDAANTSVNGEYLFSGINTDVKPITDYYYIDDDGNETDAKQNFDNLFSGYFG---- 175

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
             ++     VS ++A QM DF++ + +   D   W +NWS A+D  +  RI   E I  S
Sbjct: 176 --MSPDDDGVSGISADQMDDFMENVLEPSFDGADWTDNWSAATDETMTSRISKNEVIQSS 233

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE 295
           ++ N  G R    V+VIG+E L+ N +   RN +  K +      +SGI ++R  LG+S+
Sbjct: 234 SSANSDGFRYTGLVSVIGSEMLNGNYSTETRNAMISKAIEYSGLAVSGINDERTQLGLSQ 293

Query: 296 KNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           + +      L ++ +II+  IS   GV+ + A  +L+ L + +E SY +T +LQKLS+++
Sbjct: 294 ERVTNANDSLTSQKDIIENQISDLTGVDAYEASTRLNNLQSLVETSYTLTARLQKLSLVD 353

Query: 356 YL 357
           YL
Sbjct: 354 YL 355


>gi|15887921|ref|NP_353602.1| flagellar hook-associated protein FlgL [Agrobacterium tumefaciens
           str. C58]
 gi|15155517|gb|AAK86387.1| flagellar hook-associated protein [Agrobacterium tumefaciens str.
           C58]
          Length = 367

 Score =  322 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 99/374 (26%), Positives = 189/374 (50%), Gaps = 24/374 (6%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ IS+ ++   M     +   +   L+ E+ TG+ +D GL LGA     L+  ++ +
Sbjct: 1   MKTSFISSLAMQNSMRSTILKAQLEMTNLNTELTTGKHADLGLTLGANTARSLDLNRDID 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I+  +  NS+ T+RL +SQ  L  M K  Q++   LV      ++       +  + ++
Sbjct: 61  RISSLVSVNSIATQRLKSSQTALDGMAKAAQEIQKVLV--PNTSSEAPTLTTVSQTISNA 118

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           + +F +FAN    G++LFSGIN+  KP++ YF   S  K +++  L  F+   +      
Sbjct: 119 FNNFTSFANTAVNGEFLFSGINTDVKPVDDYFADGSPLKAAYETELNAFMAAQT-----P 173

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDE-----------------YWANNWSNASDHNIK 223
              + +S++  Q+  F+  +E  F                     +W    S AS+ N+ 
Sbjct: 174 PVGDFASLSKTQVEGFMTHIEGVFKGTTTVTNPPHTSLTAGQNYDFWTTFGSKASNTNMT 233

Query: 224 YRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSG 283
            RI   E ++ S+N N +G+R     A+    FL   +  G R ++  K ++ +   ++G
Sbjct: 234 SRISQNEIVETSSNSNSQGMRYFALTAMTSMTFLDPKVDSGIREMVAMKSVTNIGTAING 293

Query: 284 IIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYM 343
           + +Q++ LG+SE  +++    L+ +  II+T++    G++ + A  +L  L  +IE++Y 
Sbjct: 294 LNQQQSQLGLSESRVSKANDSLEAQKKIIETHLLDIEGIDTYEAKTRLDLLQQQIEIAYS 353

Query: 344 ITTKLQKLSILNYL 357
           +T++LQK+S++NYL
Sbjct: 354 LTSRLQKMSLVNYL 367


>gi|116250502|ref|YP_766340.1| flagellar hook-associated protein FlgL [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255150|emb|CAK06224.1| putative flagellar hook-associated protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 348

 Score =  322 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 100/360 (27%), Positives = 172/360 (47%), Gaps = 15/360 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK++ IS+S+I   M +  ++      K   E  TG  +D G+ LG      +++ +E +
Sbjct: 1   MKSSFISSSAIQNAMRLTIRQAQNQMTKATMEATTGVYADIGVSLGGNAARSVDFSREVD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            IA    SNSLVT R+ +SQ  LS M+ +   +V  L  L +G  D     +       +
Sbjct: 61  RIASIKSSNSLVTARMESSQLGLSKMKDVGDGLVSKLTAL-QGSHDPGSITVAIQSATSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             + +  AN    G+YLFSGIN+  +PL       S    +              +   G
Sbjct: 120 LSTMMDTANTMVNGEYLFSGINTDVQPLTDKTAATSADIVTA-----------LNTYATG 168

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDVSAN 237
               VS +   +M  FI    +    +  W +    WS AS  N+  RI ++E I+ S N
Sbjct: 169 LGKSVSDLTGTEMETFITTTVEPMFTEAAWTDPTTGWSQASSQNMTSRISNSEVIESSTN 228

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N  G+R     +V+ +  L + L+  A + ++K+ +S   +  SG++ Q + LG+S++ 
Sbjct: 229 ANSEGMRYFALASVMTSALLGQGLSSDAMSTVSKQAISYTTKATSGLVTQASQLGLSQER 288

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +K+Q+LS++NYL
Sbjct: 289 VKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQLSLVNYL 348


>gi|209547948|ref|YP_002279865.1| flagellar hook-associated protein FlgL [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533704|gb|ACI53639.1| flagellar hook-associated 3 family protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 350

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 101/360 (28%), Positives = 174/360 (48%), Gaps = 13/360 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK++ IS+S+I   M +  ++      K   E  TG  +D G+ LG      +++ +E +
Sbjct: 1   MKSSFISSSAIQNAMRLTIRQGQNQMTKATMEATTGVYADIGVSLGGNAARSVDFTRETD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I     SNSLV  R+ +SQ  LS M+ +   +V  L  L +G  D     +       +
Sbjct: 61  RIDSIKASNSLVAARMESSQLGLSKMKDVGDGLVSKLTAL-QGSHDPGSVTVAIQSATSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             + +  AN    G+YLFSGIN+  +PL    T  S A  +           NS +    
Sbjct: 120 LSTMMDTANTMVNGEYLFSGINTDVQPLTDKTTATSAAIVT---------ALNSYAAGLA 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA---NNWSNASDHNIKYRIKDTEGIDVSAN 237
               VS++   +M  FI    +       W      WS AS  N+  RI ++E I+ S N
Sbjct: 171 PPKAVSALTGAEMETFITGTVEPMFSQANWTNATTGWSQASSQNMTSRISNSEVIESSTN 230

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N  G+R +   +V+ +  L +NL+  A + ++K+ ++   +  SG++ Q + LG+S++ 
Sbjct: 231 ANSEGMRYMALASVMTSALLGQNLSSDAMSTVSKQAITYTTKATSGLVTQASQLGLSQER 290

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +K+Q+LS++NYL
Sbjct: 291 VKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQLSLVNYL 350


>gi|225628427|ref|ZP_03786461.1| flagellar hook-associated protein FlgL [Brucella ceti str. Cudo]
 gi|225616273|gb|EEH13321.1| flagellar hook-associated protein FlgL [Brucella ceti str. Cudo]
          Length = 351

 Score =  320 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 95/357 (26%), Positives = 162/357 (45%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 4   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 63

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q     + +  Q+ +G L                A   R  
Sbjct: 64  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA---GANNSGETAKTVAKSARSM 120

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q           A 
Sbjct: 121 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFG------FAM 173

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V++++  +M  F++    +  +D  WA NWS+ASD  IK RI  TE  D S + N 
Sbjct: 174 DDPQVANISGDEMKAFLEGDFAEQFNDANWAANWSDASDTRIKSRISPTETADTSISANA 233

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+++     
Sbjct: 234 DGFRKKVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGLAQSRTEA 293

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 294 ATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLNYL 350


>gi|148558140|ref|YP_001258002.1| flagellar hook-associated protein FlgL [Brucella ovis ATCC 25840]
 gi|237817500|ref|ZP_04596491.1| flagellar hook-associated protein FlgL [Brucella abortus str. 2308
           A]
 gi|148369425|gb|ABQ62297.1| putative flagellar hook-associated protein FlgL [Brucella ovis ATCC
           25840]
 gi|237787335|gb|EEP61552.1| flagellar hook-associated protein FlgL [Brucella abortus str. 2308
           A]
          Length = 351

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 95/357 (26%), Positives = 162/357 (45%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 4   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 63

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q     + +  Q+ +G L                A   R  
Sbjct: 64  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA---GANNSGETAKTVAKSARSM 120

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q           A 
Sbjct: 121 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFG------FAM 173

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V++++  +M  F++    +  +D  WA NWS+ASD  IK RI  TE  D S + N 
Sbjct: 174 DDPQVANISGDEMKAFLEGDFAEQFNDANWAANWSDASDTRIKSRISPTETADTSISANA 233

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+++     
Sbjct: 234 DGFRKTVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGLAQSRTEA 293

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 294 ATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLNYL 350


>gi|254706498|ref|ZP_05168326.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           M163/99/10]
 gi|254711217|ref|ZP_05173028.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           B2/94]
 gi|256030154|ref|ZP_05443768.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           M292/94/1]
 gi|256158333|ref|ZP_05456237.1| flagellar hook-associated protein FlgL [Brucella ceti M490/95/1]
 gi|256252733|ref|ZP_05458269.1| flagellar hook-associated protein FlgL [Brucella ceti B1/94]
 gi|260166794|ref|ZP_05753605.1| flagellar hook-associated protein FlgL [Brucella sp. F5/99]
 gi|261219811|ref|ZP_05934092.1| flagellar hook-associated protein FlgL [Brucella ceti B1/94]
 gi|261313952|ref|ZP_05953149.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           M163/99/10]
 gi|261318808|ref|ZP_05958005.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           B2/94]
 gi|261756171|ref|ZP_05999880.1| flagellar hook-associated protein [Brucella sp. F5/99]
 gi|265987185|ref|ZP_06099742.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           M292/94/1]
 gi|265996848|ref|ZP_06109405.1| flagellar hook-associated protein FlgL [Brucella ceti M490/95/1]
 gi|260918395|gb|EEX85048.1| flagellar hook-associated protein FlgL [Brucella ceti B1/94]
 gi|261298031|gb|EEY01528.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           B2/94]
 gi|261302978|gb|EEY06475.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           M163/99/10]
 gi|261736155|gb|EEY24151.1| flagellar hook-associated protein [Brucella sp. F5/99]
 gi|262551145|gb|EEZ07306.1| flagellar hook-associated protein FlgL [Brucella ceti M490/95/1]
 gi|264659382|gb|EEZ29643.1| flagellar hook-associated protein FlgL [Brucella pinnipedialis
           M292/94/1]
          Length = 348

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 95/357 (26%), Positives = 162/357 (45%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q     + +  Q+ +G L                A   R  
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA---GANNSGETAKTVAKSARSM 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q           A 
Sbjct: 118 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFG------FAM 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V++++  +M  F++    +  +D  WA NWS+ASD  IK RI  TE  D S + N 
Sbjct: 171 DDPQVANISGDEMKAFLEGDFAEQFNDANWAANWSDASDTRIKSRISPTETADTSISANA 230

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+++     
Sbjct: 231 DGFRKKVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGLAQSRTEA 290

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 291 ATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLNYL 347


>gi|190890384|ref|YP_001976926.1| flagellar hook-assosiated protein [Rhizobium etli CIAT 652]
 gi|190695663|gb|ACE89748.1| flagellar hook-assosiated protein [Rhizobium etli CIAT 652]
 gi|327193061|gb|EGE59973.1| flagellar hook-assosiated protein [Rhizobium etli CNPAF512]
          Length = 350

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 101/360 (28%), Positives = 172/360 (47%), Gaps = 13/360 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK++ IS+++I   M +  ++      K   E  TG  +D G+ LG      +++ +E +
Sbjct: 1   MKSSFISSTAIQSAMRLTIRQAQNQMTKATMEATTGVYADIGVSLGGNAARSVDFTRETD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I     SNSLV+ R+ +SQ  LS M+ +   +V  L  L +G  D     +       +
Sbjct: 61  RIDSIKSSNSLVSARMESSQLGLSKMKDVGDGLVSKLTAL-QGSHDPGSITVAIQSATSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             + +  AN    G+YLFSGIN+  +PL    T  S A  +           NS +    
Sbjct: 120 LSTMMDTANTMVNGEYLFSGINTDVQPLTDKTTATSAAIVT---------ALNSYAAGLA 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA---NNWSNASDHNIKYRIKDTEGIDVSAN 237
               VS +   +M  FI    +       W      WS AS  N+  RI ++E I+ S N
Sbjct: 171 PPKAVSDLTGTEMETFITTTVEPMFSQANWTNAATGWSQASSQNMTSRISNSEVIESSTN 230

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N  G+R     +V+ +  L +NL+  A   ++K+ +S   +  SG++ Q + LG+S++ 
Sbjct: 231 ANSEGMRYFALASVMTSALLGQNLSTDAMTTVSKQAISYTAKATSGLVTQASQLGLSQER 290

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +K+Q+LS++NYL
Sbjct: 291 VKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQLSLVNYL 350


>gi|254695091|ref|ZP_05156919.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 3 str.
           Tulya]
 gi|261215442|ref|ZP_05929723.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 3 str.
           Tulya]
 gi|260917049|gb|EEX83910.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 3 str.
           Tulya]
          Length = 348

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/357 (26%), Positives = 163/357 (45%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q     + +  Q+ +G L                A   R  
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA---GANNSGETAKTVAKSARSM 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q           A 
Sbjct: 118 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFG------FAM 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V++++  +M  F++    +  +D  WA NWS+ASD  IK RI  TE  D S + N+
Sbjct: 171 DDPQVANISGDEMKAFLEGDFAEQFNDANWAANWSDASDTRIKSRISPTETADTSISANV 230

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+++     
Sbjct: 231 DGFRKTVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGLAQSRTEA 290

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 291 ATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLNYL 347


>gi|306845417|ref|ZP_07477991.1| flagellar hook-associated protein FlgL [Brucella sp. BO1]
 gi|306274160|gb|EFM55976.1| flagellar hook-associated protein FlgL [Brucella sp. BO1]
          Length = 348

 Score =  317 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q     + +  Q+ +G L                A   R  
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA---GANNSGETAKTVAKSARSI 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q           A 
Sbjct: 118 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFG------FAM 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V++++  +M  F++    +  +D  WA NWS+ASD  IK RI  TE  D S + N 
Sbjct: 171 DDPQVANISGDEMKAFLEGDFAEQFNDANWAANWSDASDTRIKSRISPTETADTSISANA 230

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R  +  AV+  EF    L   A + LT + L    Q ++    ++  LG+++     
Sbjct: 231 DGFRKTVMSAVMVAEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGLAQSRTEA 290

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 291 ATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLNYL 347


>gi|17988505|ref|NP_541138.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 1
           str. 16M]
 gi|23500852|ref|NP_700292.1| flagellar hook-associated protein FlgL [Brucella suis 1330]
 gi|62317955|ref|YP_223808.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 1 str.
           9-941]
 gi|83269932|ref|YP_419223.1| flagellar hook-associated protein FlgL [Brucella melitensis biovar
           Abortus 2308]
 gi|161621180|ref|YP_001595066.1| flagellar hook-associated protein FlgL [Brucella canis ATCC 23365]
 gi|163845455|ref|YP_001623110.1| flagellar hook-associated protein FlgL [Brucella suis ATCC 23445]
 gi|189023206|ref|YP_001932947.1| flagellar hook-associated protein FlgL [Brucella abortus S19]
 gi|225686883|ref|YP_002734855.1| flagellar hook-associated protein FlgL [Brucella melitensis ATCC
           23457]
 gi|254691613|ref|ZP_05154867.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 6 str.
           870]
 gi|254699260|ref|ZP_05161088.1| flagellar hook-associated protein FlgL [Brucella suis bv. 5 str.
           513]
 gi|254711816|ref|ZP_05173627.1| flagellar hook-associated protein FlgL [Brucella ceti M644/93/1]
 gi|254714885|ref|ZP_05176696.1| flagellar hook-associated protein FlgL [Brucella ceti M13/05/1]
 gi|254731632|ref|ZP_05190210.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 4 str.
           292]
 gi|256015896|ref|YP_003105905.1| flagellar hook-associated protein [Brucella microti CCM 4915]
 gi|256042864|ref|ZP_05445810.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256112178|ref|ZP_05453099.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 3
           str. Ether]
 gi|256256800|ref|ZP_05462336.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 9 str.
           C68]
 gi|256261980|ref|ZP_05464512.1| flagellar hook-associated protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544140|ref|ZP_05819961.1| flagellar hook-associated protein [Brucella abortus NCTC 8038]
 gi|260564101|ref|ZP_05834586.1| flagellar hook-associated protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260568716|ref|ZP_05839185.1| flagellar hook-associated protein [Brucella suis bv. 4 str. 40]
 gi|260757244|ref|ZP_05869592.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 6 str.
           870]
 gi|260759391|ref|ZP_05871739.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 4 str.
           292]
 gi|260883048|ref|ZP_05894662.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 9 str.
           C68]
 gi|261216575|ref|ZP_05930856.1| flagellar hook-associated protein FlgL [Brucella ceti M13/05/1]
 gi|261319445|ref|ZP_05958642.1| flagellar hook-associated protein FlgL [Brucella ceti M644/93/1]
 gi|261749700|ref|ZP_05993409.1| flagellar hook-associated protein FlgL [Brucella suis bv. 5 str.
           513]
 gi|265989299|ref|ZP_06101856.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993605|ref|ZP_06106162.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 3
           str. Ether]
 gi|294852966|ref|ZP_06793638.1| flagellar hook-associated protein 3 FlgL [Brucella sp. NVSL
           07-0026]
 gi|297250153|ref|ZP_06933854.1| flagellar hook-associated protein 3 FlgL [Brucella abortus bv. 5
           str. B3196]
 gi|17984297|gb|AAL53402.1| flagellar hook-associated protein 3 [Brucella melitensis bv. 1 str.
           16M]
 gi|23464516|gb|AAN34297.1| flagellar hook-associated protein FlgL, putative [Brucella suis
           1330]
 gi|62198148|gb|AAX76447.1| hypothetical flagellar hook-associated protein FlgL [Brucella
           abortus bv. 1 str. 9-941]
 gi|82940206|emb|CAJ13262.1| flagellar hook-associated protein FlgL, putative KO: K02397
           flagellar hook-associated protein 3 FlgL [Brucella
           melitensis biovar Abortus 2308]
 gi|161337991|gb|ABX64295.1| flagellar hook-associated 3 family protein [Brucella canis ATCC
           23365]
 gi|163676178|gb|ABY40288.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189021780|gb|ACD74501.1| flagellar hook-associated protein [Brucella abortus S19]
 gi|225642988|gb|ACO02901.1| flagellar hook-associated 3 family protein [Brucella melitensis
           ATCC 23457]
 gi|255998556|gb|ACU50243.1| flagellar hook-associated protein [Brucella microti CCM 4915]
 gi|260097411|gb|EEW81285.1| flagellar hook-associated protein [Brucella abortus NCTC 8038]
 gi|260151744|gb|EEW86837.1| flagellar hook-associated protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260155381|gb|EEW90462.1| flagellar hook-associated protein [Brucella suis bv. 4 str. 40]
 gi|260669709|gb|EEX56649.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 4 str.
           292]
 gi|260677352|gb|EEX64173.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 6 str.
           870]
 gi|260872576|gb|EEX79645.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 9 str.
           C68]
 gi|260921664|gb|EEX88232.1| flagellar hook-associated protein FlgL [Brucella ceti M13/05/1]
 gi|261292135|gb|EEX95631.1| flagellar hook-associated protein FlgL [Brucella ceti M644/93/1]
 gi|261739453|gb|EEY27379.1| flagellar hook-associated protein FlgL [Brucella suis bv. 5 str.
           513]
 gi|262764475|gb|EEZ10507.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 3
           str. Ether]
 gi|262999968|gb|EEZ12658.1| flagellar hook-associated protein FlgL [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263091464|gb|EEZ16000.1| flagellar hook-associated protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|294818621|gb|EFG35621.1| flagellar hook-associated protein 3 FlgL [Brucella sp. NVSL
           07-0026]
 gi|297174022|gb|EFH33386.1| flagellar hook-associated protein 3 FlgL [Brucella abortus bv. 5
           str. B3196]
 gi|326411301|gb|ADZ68365.1| flagellar hook-associated protein FlgL [Brucella melitensis M28]
 gi|326554590|gb|ADZ89229.1| flagellar hook-associated protein FlgL [Brucella melitensis M5-90]
          Length = 348

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 95/357 (26%), Positives = 162/357 (45%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q     + +  Q+ +G L                A   R  
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA---GANNSGETAKTVAKSARSM 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q           A 
Sbjct: 118 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFG------FAM 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V++++  +M  F++    +  +D  WA NWS+ASD  IK RI  TE  D S + N 
Sbjct: 171 DDPQVANISGDEMKAFLEGDFAEQFNDANWAANWSDASDTRIKSRISPTETADTSISANA 230

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+++     
Sbjct: 231 DGFRKTVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGLAQSRTEA 290

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 291 ATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLNYL 347


>gi|254720775|ref|ZP_05182586.1| flagellar hook-associated protein FlgL [Brucella sp. 83/13]
 gi|265985833|ref|ZP_06098568.1| flagellar hook-associated protein FlgL [Brucella sp. 83/13]
 gi|306840134|ref|ZP_07472919.1| flagellar hook-associated protein FlgL [Brucella sp. NF 2653]
 gi|264664425|gb|EEZ34686.1| flagellar hook-associated protein FlgL [Brucella sp. 83/13]
 gi|306404779|gb|EFM61073.1| flagellar hook-associated protein FlgL [Brucella sp. NF 2653]
          Length = 348

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q     + +  Q+ +G L                A   R  
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA---GANNSGETAKTVAKSARSM 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q           A 
Sbjct: 118 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFG------FAM 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V++++  +M  F++    +  +D  WA NWS+ASD  IK RI  TE  D S + N 
Sbjct: 171 DDPQVANISGDEMKAFMEGDFAEQFNDANWAANWSDASDTRIKSRISPTETADTSISANA 230

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R  +  AV+  EF    L   A + LT + L    Q ++    ++  LG+++     
Sbjct: 231 DGFRKTVMSAVMVAEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGLAQSRTEA 290

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 291 ATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLNYL 347


>gi|86356332|ref|YP_468224.1| flagellar hook-associated protein FlgL [Rhizobium etli CFN 42]
 gi|86280434|gb|ABC89497.1| flagellar hook-assosiated protein [Rhizobium etli CFN 42]
          Length = 350

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 103/360 (28%), Positives = 175/360 (48%), Gaps = 13/360 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK++ IS+S+I   M +  ++      K   E  TG  +D G+ LG      +++ +E +
Sbjct: 1   MKSSFISSSAIQNAMRLTIRQAQNQMTKATMEATTGVYADIGVSLGGNAARSVDFTRETD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I     SNSLVT R+ +SQ  LS M+ +   +V  L  L +G  D     +       +
Sbjct: 61  RIDSIKSSNSLVTARMESSQLGLSKMKDVGDGLVSKLTAL-QGSHDPGSITVAIQSATSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             + +  AN    G+YLFSGIN+  +PL    T  S A  +           N+ +    
Sbjct: 120 LSTMMDTANTVVNGEYLFSGINTDVQPLTDKTTATSAAIVT---------ALNTYAAGLV 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA---NNWSNASDHNIKYRIKDTEGIDVSAN 237
               VS +   +M+ FI    +    +  W      WS AS  N+  RI ++E I+ S N
Sbjct: 171 PPKAVSDLTGAEMSTFITTTVEPMFSEASWTNTTTGWSQASSQNMTSRISNSEVIESSTN 230

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N  G+R +   +V+ T  L +NL+  A   ++K+ +S   +  SG++ Q + LG+S++ 
Sbjct: 231 ANSEGMRYMALASVMTTALLGQNLSTDAMTTVSKQAISYTAKATSGLVTQASQLGLSQER 290

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +K+Q+LS++NYL
Sbjct: 291 VKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQLSLVNYL 350


>gi|306841278|ref|ZP_07473989.1| flagellar hook-associated protein FlgL [Brucella sp. BO2]
 gi|306288680|gb|EFM60011.1| flagellar hook-associated protein FlgL [Brucella sp. BO2]
          Length = 348

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 94/357 (26%), Positives = 162/357 (45%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q     + +  Q+ +G L                A   R  
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA---GANNSGETAKTVAKSARSM 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q           A 
Sbjct: 118 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFG------FAM 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V++++  +M  F++    +  +D  WA NWS+ASD  IK RI  TE  D S + N 
Sbjct: 171 DDPQVANISGDEMKAFMEGDFAEQFNDANWAANWSDASDTRIKSRISPTETADTSISANA 230

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R  +  AV+  EF    L   A + LT ++L    Q ++    ++  LG+++     
Sbjct: 231 DGFRKTVMSAVMVAEFADIGLNASAFDALTTQVLQITTQAVTETTSEQTTLGLAQSRTEA 290

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 291 ATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLNYL 347


>gi|325291964|ref|YP_004277828.1| flagellar hook-associated protein FlgL [Agrobacterium sp. H13-3]
 gi|325059817|gb|ADY63508.1| flagellar hook-associated protein FlgL [Agrobacterium sp. H13-3]
          Length = 367

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 187/374 (50%), Gaps = 24/374 (6%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ IS+ ++   M     +   +   L+ E+ TG+ +D G+ LGA     L+  ++ +
Sbjct: 1   MKTSFISSLAMQNSMRSTILKAQLEMTNLNTELTTGKHADLGVTLGANTARSLDLNRDVD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++  +  NS+ T+RL +SQA L  M K  Q++   LV      +        A  + ++
Sbjct: 61  RLSSLVSVNSIATQRLKSSQAALDGMAKAAQEIQKVLV--PNTSSAAPTLATVAKTISNA 118

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           + +F  FAN    G++LFSGIN+  KP++ YF + S  K +++  L  F+   + ++   
Sbjct: 119 FNTFTGFANTAVSGEFLFSGINTDVKPIDDYFAEGSTLKAAYEVELNAFMAAQTPAVGN- 177

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDE-----------------YWANNWSNASDHNIK 223
               ++ ++  Q   F+ ++E  F+                    +W    S ASD N+ 
Sbjct: 178 ----IADLSKDQAAAFMTRIEGVFNGTTPVTNPPHSDLTAGQNYDFWTTYGSKASDTNMT 233

Query: 224 YRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSG 283
            RI   E ++ S N N +G+R     A+    FL   +    R ++  + ++ +   +SG
Sbjct: 234 SRISQNEVVETSTNSNSQGMRYFAMTAMTAMTFLDDKVPSDVRELVATRSVTNIGTVISG 293

Query: 284 IIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYM 343
           + +Q++ LG+SE  +++    L  +  II+T++    G++ +    +L  L  +IE++Y 
Sbjct: 294 LNQQQSQLGLSESRVSKANDSLAAQKKIIETHLLDIEGIDTYEVKTRLDLLQQQIEIAYS 353

Query: 344 ITTKLQKLSILNYL 357
           +T++LQK+S++NYL
Sbjct: 354 LTSRLQKMSLVNYL 367


>gi|254702381|ref|ZP_05164209.1| flagellar hook-associated protein FlgL [Brucella suis bv. 3 str.
           686]
 gi|261752944|ref|ZP_05996653.1| flagellar hook-associated protein FlgL [Brucella suis bv. 3 str.
           686]
 gi|261742697|gb|EEY30623.1| flagellar hook-associated protein FlgL [Brucella suis bv. 3 str.
           686]
          Length = 348

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 95/357 (26%), Positives = 162/357 (45%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q     + +  Q+ +G L                A   R  
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA---GANNSGETTKTVAKSARSM 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q           A 
Sbjct: 118 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFG------FAM 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V++++  +M  F++    +  +D  WA NWS+ASD  IK RI  TE  D S + N 
Sbjct: 171 DDPQVANISGDEMKAFLEGDFAEQFNDANWAANWSDASDTRIKSRISPTETADTSISANA 230

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+++     
Sbjct: 231 DGFRKTVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGLAQSRTEA 290

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 291 ATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLNYL 347


>gi|319403980|emb|CBI77568.1| putative flagellar hook-associated protein 3 (HAP3) [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 360

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 165/368 (44%), Gaps = 20/368 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+   IST  +      L  E   D +K   EM TGQ  D GL LG +   +++ E + +
Sbjct: 1   MRVPSISTYVLNNARRNLISEGKSDLMKAGYEMATGQVYDPGLTLGRKTGRLMDIENQMS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQ--DMVGPLVI---LLEGKTDNNKFPINAG 115
           ++     SN L++ RLS+ QA + S+          G LV+   +L G   N        
Sbjct: 61  YLEGYSTSNKLLSLRLSSVQAAIQSLIASGDKESTPGSLVVFNNMLVGDAGNAAPSAAQA 120

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSK 175
           + +++  +F++  N    G+Y+F G N+SE PL  Y       K   +      + E  +
Sbjct: 121 VAQNALSAFISALNTNFNGEYIFGGTNTSEPPLKFY-------KVCGETGPSKIVHEAFE 173

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIK-DTEGIDV 234
           + L G+  E   + +++M +FI        ++E +   +SNA D + +  I  + + +DV
Sbjct: 174 NFLNGRKPE--DLTSEEMEEFIDGPFSDLFNEENFKEFFSNAKDGSTEKHIAPNGDKVDV 231

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKML-----STVQQGLSGIIEQRA 289
           + + N +G RD M   ++  EF    L+  A+  L  +       ++    +  I    +
Sbjct: 232 AVSANDKGFRDAMKNLILVAEFGDIGLSKEAQESLFSRARVSADNTSTSSVVDEITATAS 291

Query: 290 VLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQ 349
            +G +E  +      ++ +  ++       IGV+      ++  L   +E SY +T  ++
Sbjct: 292 RVGSTETRVKAATHQIETQVGLLKGAQIDMIGVDAAEVAQKVKALEAMLEASYTLTDMIR 351

Query: 350 KLSILNYL 357
           +LS++NYL
Sbjct: 352 RLSLINYL 359


>gi|260466601|ref|ZP_05812789.1| flagellar hook-associated 3 family protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259029607|gb|EEW30895.1| flagellar hook-associated 3 family protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 347

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 91/354 (25%), Positives = 166/354 (46%), Gaps = 9/354 (2%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T +S++++          +  D VK  +E  TG+ +D GL LG R    + + ++ + + 
Sbjct: 2   TSVSSAALSNAARYQQMRMQADLVKATKESSTGRIADVGLALGGRTAQSVTFSRDLDRLN 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             + SN LV  RLS++Q  L  +  + Q  +  L     G   +    +     + + + 
Sbjct: 62  VIVDSNGLVAARLSSTQTSLGQLSSVAQTFLSSLTTASSGDNSD---SLTQSTGQTTIQQ 118

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             +  N +  G+YLF+G N+  KP+N +    S AK +FD              LA    
Sbjct: 119 LASILNTSVNGEYLFAGTNTDVKPINDFTAPGSPAKAAFDASFVANFGFPPNDPLA---- 174

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             +++ A QM DFI    +       W  N SNA+D  I  RI   E  + S   N  GI
Sbjct: 175 --ANITAAQMDDFITNDVEPQFLGSGWQTNMSNATDQQIVSRIALNETTETSTGANSDGI 232

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           + +   A + +  +S N++  A++ +  +    V + LSGI + ++  GI +K +++   
Sbjct: 233 KKLAMAAAMVSSLMSTNISQAAKDTIVSRSQILVGEALSGIAQVQSETGIVQKRVSDASD 292

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++ + ++ + +I     V+   A  +++ L   IE S+ +T +LQ+LS+LNYL
Sbjct: 293 RMKTQVDLFERHILDLEAVDPAEAATRVADLTQHIETSFALTARLQQLSLLNYL 346


>gi|10998530|gb|AAG25960.1|AF300968_2 FlgL [Sinorhizobium meliloti]
          Length = 345

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 107/357 (29%), Positives = 192/357 (53%), Gaps = 12/357 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ +S  ++   M +  ++   + +KL  E+ TG+ +D GL LG+     +  ++E  
Sbjct: 1   MKTSFVSNLAVQNAMRLTIQQGQAELLKLQTEVTTGRHADVGLALGSSAARSVSLQRELA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NS+VT+RL+ SQ+ LS+M +  Q +   LV   +G    ++  I    ++ +
Sbjct: 61  RLGTLVDTNSVVTQRLAASQSALSAMAEAAQQVRNTLVTF-KGNDAADQLAIQKTEIQSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             +F + AN++  G++LF+GIN+  +PL  Y   ++ AK +FD  L  F+  N  +    
Sbjct: 120 MSAFSSAANLSFNGEFLFAGINTDVRPLEDY---NAAAKSTFDTALATFMSANGIA---- 172

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               +S     QM DFI    +   D E WA +WS AS  N+  RI  TE +  S N   
Sbjct: 173 ---SMSDFTKAQMEDFITNTLEPLYDTE-WAADWSKASSQNMTSRISTTEVVQSSTNATT 228

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R     +VI  E + +N++   R  + +  L  V+Q  + I  +R+ LGISE  + +
Sbjct: 229 EGFRKFALASVIALELMDENVSSEVRAYIGEAALGYVEQANTQITAERSTLGISEARVKK 288

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               LQ +  +I+T+I+   GV+ + A  +++TL+ ++E SY +T ++Q+LS++++L
Sbjct: 289 ANTSLQAQIKLINTHITDLEGVDTYEASTRMNTLLTQVETSYTLTARIQRLSLIDFL 345


>gi|319781663|ref|YP_004141139.1| flagellar hook-associated protein FlgL [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167551|gb|ADV11089.1| flagellar hook-associated protein FlgL [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 347

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 92/354 (25%), Positives = 167/354 (47%), Gaps = 9/354 (2%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T +S+++I   M      +  + VK  +E  TG+ +D GL LG R T  + ++++ + + 
Sbjct: 2   TSVSSAAISNAMRSQQMRMQAELVKATKESSTGRVADVGLALGGRTTQAVTFQRDLDRLN 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             + SN LV  RLS++Q  L  +    Q  +  L       + ++   +     + + + 
Sbjct: 62  VIIDSNGLVGARLSSTQTSLGQLSTAAQTFLSALT---TASSSDSSNSLTQSSGKATIQQ 118

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             +  N +  G+YLF+G N+  KP+N +    S AK +FD                    
Sbjct: 119 LTSILNTSVNGEYLFAGTNTDVKPINDFTAAGSPAKAAFDAAFVANFG------FTQDDP 172

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             + + A QM DFI            W  NWSNA+D  I  RI   E    S + N  GI
Sbjct: 173 LAADITAAQMDDFITNDVAPQFTGAGWQGNWSNATDQQIVSRIALNETTPTSTSANSAGI 232

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           + +   A + +  +S N++  A+N +  +  + V + LSGI + ++  GI +K +++   
Sbjct: 233 QKLAMAAAMVSSLMSSNISQAAKNTVVSRSTTLVGEALSGIGQLQSETGIVQKRVSDAND 292

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++ + ++ + +I     V+   A  +++ L   IE S+ +T +LQ+LS+LNYL
Sbjct: 293 RMKTQVDLFERHILDLEAVDPAEAATRVADLTQHIETSFALTARLQQLSLLNYL 346


>gi|319405423|emb|CBI79042.1| putative flagellar hook-associated protein 3 (HAP3) [Bartonella sp.
           AR 15-3]
          Length = 360

 Score =  312 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 169/368 (45%), Gaps = 20/368 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ + IST  +      +  E   D +K   EM TGQ  D GL+LG +   +++ E + +
Sbjct: 1   MRVSSISTYVLNNARRNIISEGQSDLMKAGYEMATGQVYDPGLELGRKTGRLMDIENQMS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQ--DMVGPLVI---LLEGKTDNNKFPINAG 115
           ++     SN L++ RLS+ Q  + S+          G L I   +L G   N    +   
Sbjct: 61  YLEGYSTSNKLLSLRLSSVQVAIQSLIASGDKEATPGALTIFNNMLVGDAGNATPSVAQS 120

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSK 175
           + ++S  +F++  N    G+Y+F GIN+SE PL  Y       K   +      ++E  +
Sbjct: 121 VAQNSLGAFISALNTNFNGEYVFGGINTSEPPLKFY-------KVGGETGPSKIVQETFE 173

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIK-DTEGIDV 234
           + L G+ LE   + +++M +FI        ++E +   +SNA   +I+  I  + + +D 
Sbjct: 174 NFLNGRKLE--DLTSEEMEEFIDGPFSDLFNEENFKEFFSNAQGGSIEKHIAPNGDKVDA 231

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKML-----STVQQGLSGIIEQRA 289
           + + N +G RD M   ++  EF    L+  A+  L  +       ++    +  II   +
Sbjct: 232 AVSANEQGFRDAMKNLILVAEFGDIGLSKEAQESLFSRARVSADDTSTSSAVDKIIATAS 291

Query: 290 VLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQ 349
            +G +E  +      ++ +  ++       IGV+      ++  L   +E SY +T  ++
Sbjct: 292 KVGSTEARVKAATQQIETQVGLLKGAKINMIGVDAAEVAQKVKALEAMLEASYTLTDMIR 351

Query: 350 KLSILNYL 357
           +LS++NYL
Sbjct: 352 RLSLINYL 359


>gi|15964434|ref|NP_384787.1| flagellar hook-associated protein FlgL [Sinorhizobium meliloti
           1021]
 gi|307311576|ref|ZP_07591217.1| flagellar hook-associated 3 family protein [Sinorhizobium meliloti
           BL225C]
 gi|15073611|emb|CAC45253.1| Putative flagellar hook-associated protein [Sinorhizobium meliloti
           1021]
 gi|306899593|gb|EFN30222.1| flagellar hook-associated 3 family protein [Sinorhizobium meliloti
           BL225C]
          Length = 345

 Score =  312 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 106/357 (29%), Positives = 191/357 (53%), Gaps = 12/357 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ +S  ++   M +  ++   + +KL  E+ TG+ +D GL LG+     +  ++E  
Sbjct: 1   MKTSFVSNLAVQNAMRLTIQQGQAELLKLQTEVTTGRHADVGLALGSSAARSVSLQRELA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NS+VT+RL+ SQ+ LS+M +  Q +   LV   +G    ++  I    ++ +
Sbjct: 61  RLGTLVDTNSVVTQRLAASQSALSAMAEAAQQVRNTLVTF-KGNDAADQLAIQKTEIQSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             +F + AN++  G++LF+GIN+  +PL  Y   ++ AK +FD  L  ++  N       
Sbjct: 120 MSAFSSAANLSFNGEFLFAGINTDVRPLEDY---NAAAKSTFDTALATYMSAN------- 169

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               +S     QM DFI    +   D E WA +WS AS  N+  RI  TE +  S N   
Sbjct: 170 GITSMSDFTKAQMEDFITNTLEPLYDTE-WAADWSKASSQNMTSRISTTEVVQSSTNATT 228

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R     +VI  E + +N++   R  + +  L  V+Q  + I  +R+ LGISE  + +
Sbjct: 229 EGFRKFALASVIALELMDENVSSEVRAYIGEAALGYVEQANTQITAERSTLGISEARVKK 288

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               LQ +  +I+T+I+   GV+ + A  +++TL+ ++E SY +T ++Q+LS++++L
Sbjct: 289 ANTSLQAQIKLINTHITDLEGVDTYEASTRMNTLLTQVETSYTLTARIQRLSLIDFL 345


>gi|153011506|ref|YP_001372720.1| flagellar hook-associated protein FlgL [Ochrobactrum anthropi ATCC
           49188]
 gi|151563394|gb|ABS16891.1| flagellar hook-associated 3 family protein [Ochrobactrum anthropi
           ATCC 49188]
          Length = 348

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 91/357 (25%), Positives = 162/357 (45%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + +K  +E  TG   D GL LG++    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMLKAQQEATTGTVFDVGLSLGSKSGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q    ++ +  Q+ +G L          +     A   +  
Sbjct: 61  RLSVLTDMNKLVQQRMNATQTAAGTIIENTQNFLGDLTGANNTAESASTI---AKSAKSI 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             S     N +  G+Y+F+G+N+  KP+  Y T+ S A+ +  Q  Q           A 
Sbjct: 118 LNSVTGLLNTSYNGEYIFAGVNTDVKPVADY-TEGSAAQTAVRQAFQTHFG------FAI 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V+++   +M  F++       +D  WA NWS+ASD  IK RI  TE  D S + N 
Sbjct: 171 DDPQVANITGDEMKAFLEGDFADEFNDANWAANWSDASDTVIKSRISPTETADTSISANA 230

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R  +  AV+  EF +  L + A   LT + + T    ++    ++  LG+++     
Sbjct: 231 DGFRKTIMSAVMVAEFATIGLNNSAFEALTHQAMQTTTTAITETTSEQTTLGLAQSRTEA 290

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 291 ATTRIAAQQKILNQSVLNLEEVDPYEAATRVNALKTQIETSYSLTVQLQNMSLLNYL 347


>gi|239834425|ref|ZP_04682753.1| flagellar hook-associated protein FlgL [Ochrobactrum intermedium
           LMG 3301]
 gi|239822488|gb|EEQ94057.1| flagellar hook-associated protein FlgL [Ochrobactrum intermedium
           LMG 3301]
          Length = 351

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 92/357 (25%), Positives = 161/357 (45%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  +  +   + +K  +E  TG   D GL LG++    +   +E +
Sbjct: 4   MKAQSISTYGATSALRAMVAKNKAEMLKAQQEATTGTVFDVGLSLGSKSGQTVSLRKEYD 63

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q    ++ +  Q+ +G L                A   +  
Sbjct: 64  RLSVLTDMNKLVQQRMNATQTAAGTIIENTQNFLGDLT---GANNTAESAATIAKSAKSI 120

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             S     N +  G+Y+F+G+N+  KP+  Y T+ S A+ +  Q  Q           A 
Sbjct: 121 LNSVTGLLNTSYNGEYIFAGVNTDVKPVADY-TEGSAAQTAVRQAFQNHFG------FAI 173

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V+++   +MT F+     +  +D  WA NWS+ASD  IK RI  TE  D S + N 
Sbjct: 174 DDPQVANITGDEMTAFLDGDFAEEFNDANWAANWSDASDTVIKSRISPTETADTSISANA 233

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R  +  AV+  EF +  L   A   LT K + T    ++    ++  LG+++     
Sbjct: 234 DGFRRTIMSAVMVAEFATIGLNSQAFEALTGKAMQTTTTAITETTSEQTTLGLAQSRTQA 293

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 294 ATTRIVAQQKILNQSVLNLEEVDPYEAATRVNALKTQIETSYSLTVQLQNMSLLNYL 350


>gi|307318931|ref|ZP_07598362.1| flagellar hook-associated 3 family protein [Sinorhizobium meliloti
           AK83]
 gi|306895345|gb|EFN26100.1| flagellar hook-associated 3 family protein [Sinorhizobium meliloti
           AK83]
          Length = 347

 Score =  310 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 193/358 (53%), Gaps = 12/358 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ +S  ++   M +  ++   + +KL  E+ TG+ +D GL LG+     +  ++E  
Sbjct: 1   MKTSFVSNLAVQNAMRLTIQQGQAELLKLQTEVTTGRHADVGLALGSSAARSVSLQRELA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NS+VT+RL+ SQ+ LS+M +  Q +   LV   +G    ++  I    ++ +
Sbjct: 61  RLGTLVDTNSVVTQRLAASQSALSAMAEAAQQVRNTLVTF-KGNDAADQLAIQKTEIQSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             +F + AN++  G++LF+GIN+  +P + Y   ++ AK +FD  L  ++  N  +    
Sbjct: 120 MSAFSSAANLSFNGEFLFAGINTDVRPFDDY---NAAAKSTFDTALATYMSANGIA---- 172

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKF-SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
               +S     +M DFI    +   + D  WA +WS AS  N+  RI  TE +  S N  
Sbjct: 173 ---SMSDFTKAEMEDFITNTLEPLYASDAQWAADWSKASSQNMTSRISTTEVVQSSTNAT 229

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
             G R     +VI  E + +N++   R  + +  LS V+Q  + I  +R+ LGISE  + 
Sbjct: 230 TEGFRKFALASVIALELMDENVSSEVRAYIGEAALSYVEQANTQITAERSTLGISEARVK 289

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    LQ +  +I+T+I+   GV+ + A  +++TL+ ++E SY +T ++Q+LS++++L
Sbjct: 290 KANTSLQAQIKLINTHITDLEGVDTYEASTRMNTLLTQVETSYTLTARIQRLSLIDFL 347


>gi|319406996|emb|CBI80633.1| putative flagellar hook-associated protein 3 (HAP3) [Bartonella sp.
           1-1C]
          Length = 360

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 166/368 (45%), Gaps = 20/368 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+   IST  +      +  E   D +K   EM TGQ  D GL LG +   +++ E + +
Sbjct: 1   MRVPSISTYVLNNAQRNIISEGKFDLMKAGYEMATGQVYDPGLTLGRKTGRLMDIENQMS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQ--DMVGPLVI---LLEGKTDNNKFPINAG 115
           ++     SN L++ RLS+ QA + S+          G LV+   +L G   N        
Sbjct: 61  YLEGYSTSNKLLSLRLSSVQAAIQSLIASGDKESTPGALVVFNNMLVGDAGNATPSATQA 120

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSK 175
           + +++  +F++  N    G+Y+F G N+SE PL  Y       K   +      + E  +
Sbjct: 121 VAQNALSAFISALNTNFNGEYIFGGTNTSEPPLKFY-------KVGGETGPSKIVHEAFE 173

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIK-DTEGIDV 234
           S L G+  E   + +++M +FI        ++E +   +SNA D + +  I  + + +DV
Sbjct: 174 SFLNGRKPE--DLTSEEMEEFIDGPFSDLFNEENFKEFFSNAKDGSTEKHIAPNGDKVDV 231

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKML-----STVQQGLSGIIEQRA 289
           + + + +G RD M   ++  EF    L+  A+  L  +       ++    +  II   +
Sbjct: 232 AVSASDKGFRDAMKNLILVAEFGDVGLSKEAQESLFSRARVSADNTSTSSVVDEIIATAS 291

Query: 290 VLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQ 349
            +G +E  +      ++ +  ++       IGV+      ++  L   +E SY +T  ++
Sbjct: 292 RVGSAETRVKAATHQIETQVGLLKGAQIDMIGVDAADVAQKVKALEAMLEASYTLTDMIR 351

Query: 350 KLSILNYL 357
           +LS++NYL
Sbjct: 352 RLSLVNYL 359


>gi|150395505|ref|YP_001325972.1| flagellar hook-associated protein FlgL [Sinorhizobium medicae
           WSM419]
 gi|150027020|gb|ABR59137.1| flagellar hook-associated 3 family protein [Sinorhizobium medicae
           WSM419]
          Length = 350

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 106/358 (29%), Positives = 193/358 (53%), Gaps = 9/358 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKT+ +S  ++   M +  ++   + +KL  E+ TG+ +D GL LG+     +  ++E  
Sbjct: 1   MKTSFVSNLAVQNAMRLTIQQGQAELLKLQTEVTTGRHADVGLALGSSTARSVSLQRELA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   + +NS+VT+RL+ SQ+ L++M +  Q +   LV   +G    ++  I    ++ +
Sbjct: 61  RLGTLVDTNSVVTQRLAASQSALAAMAEAAQQVRNTLVTF-KGNDAADQLAIQNTEIQSA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             +F + AN++  G++LF+GIN+  +P N Y    S AK +FD  L  ++  N  +    
Sbjct: 120 ISAFSSAANLSFNGEFLFAGINTDVRPFNDYSAAGSTAKTTFDNALATYMSANGIA---- 175

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKF-SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
               +S     QM DFI    +   + D  WA +WS+AS  N+  RI  TE +  SAN  
Sbjct: 176 ---SMSDFTKAQMEDFITNTLEPLYASDAQWAADWSDASSQNMTSRISTTEVVQSSANAT 232

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
             G R     +VI  E + +N++   R  + +  L  V+Q  + I  +R+ LGISE  + 
Sbjct: 233 TEGFRKFALASVIALELMDENVSSEVRAYIGEAALGYVEQANTQITAERSTLGISEARVK 292

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    LQ +  +I T+I+   GV+ + A  +++TL+ ++E SY +T+++Q+LS++++L
Sbjct: 293 KANTSLQAQIKLIKTHITDLEGVDTYEASTRMNTLLTQVETSYTLTSRIQRLSLIDFL 350


>gi|319409167|emb|CBI82811.1| putative flagellar hook-associated protein 3 (HAP3) [Bartonella
           schoenbuchensis R1]
          Length = 360

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 165/369 (44%), Gaps = 22/369 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+   +ST  +      +      + ++   E  TG+  D GL LG R   ++  E + +
Sbjct: 1   MRVPSVSTYVLSNARRDVIANGQSELMQASYEATTGKLYDPGLTLGRRTGRLVNIESQMS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVI-----LLEGKTDNNKFPINAG 115
           ++    ++N L   R+S+ QA + S+     +   P  +     +L G   +    +   
Sbjct: 61  YLEGFSNTNKLTMLRMSSMQAAIHSLVSSGDEAAAPGALTLFNNMLVGDPGSAAPSVIQA 120

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKD-SLAKKSFDQMLQGFLEENS 174
           + +DS  +F++  N    G+Y+F G N+SE+PLN Y     +   K        FL    
Sbjct: 121 VAQDSLSAFISALNTNYNGEYVFGGTNTSEQPLNFYTVGGETGPSKVVRDTFDEFLG--- 177

Query: 175 KSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI-KDTEGID 233
                    +   + +++M +FI        D+E +   +SNA D +I+ RI  + E ++
Sbjct: 178 -------GRKPEDLTSEEMEEFIDGPFSSLFDEENFTQIFSNAQDGSIEKRILSNGETVN 230

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQ-----GLSGIIEQR 288
           V+A+ N +G RD M   V+  EF    L+  A+  L  K  ++  Q       S II   
Sbjct: 231 VAASANEKGFRDAMKSMVLVAEFGDIGLSKDAQEGLYSKARTSNDQTSTSSSTSEIIAIA 290

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           + +G +E  +      ++ + +++       IGV+   A  ++  L   + +SY +T ++
Sbjct: 291 SRIGSAEARVKTATQRIEIQKDLLMKAKIDLIGVDSTEAVQKVQALEAMLNLSYTLTGRI 350

Query: 349 QKLSILNYL 357
            +LS++NYL
Sbjct: 351 SQLSLVNYL 359


>gi|319898658|ref|YP_004158751.1| flagellar hook-associated protein 3 (HAP3) [Bartonella clarridgeiae
           73]
 gi|319402622|emb|CBI76167.1| putative flagellar hook-associated protein 3 (HAP3) [Bartonella
           clarridgeiae 73]
          Length = 360

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 166/368 (45%), Gaps = 20/368 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ + IST  +      +  E   D +K   EM TGQ  D GL LG +   +++ E + +
Sbjct: 1   MRVSSISTYVLNNARRNIISEGQSDLMKAAYEMATGQVYDPGLALGRKTARLIDVENQMS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSM--QKIVQDMVGPLVI---LLEGKTDNNKFPINAG 115
           ++     S+ L+T RLS+ Q  + ++      +   G L I   +L G   N        
Sbjct: 61  YLEGYSTSDKLLTLRLSSVQVAIQTLIASDDKEAAPGALTIFNNMLVGDAGNATPSAAQA 120

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSK 175
           + +++  +F++  N    G+Y+F G N+SE PL  Y       K   +      ++E  +
Sbjct: 121 VAQNALGAFISALNTNFNGEYIFGGTNTSEPPLKFY-------KVGGETGPSKIVQETFE 173

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIK-DTEGIDV 234
           + L G+ LE   + +++M +FI        ++E +   +SNA D +I+  I  + + +D 
Sbjct: 174 NFLNGRKLE--DLTSEEMEEFIDGPFSDLFNEENFKEFFSNAQDGSIEKHIAPNGDKVDA 231

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKML-----STVQQGLSGIIEQRA 289
           + + N +G R  M   ++  EF    L+  A+  L  +       ++    +  II   +
Sbjct: 232 AVSANDKGFRYAMKNLILVAEFGDIGLSKEAQESLFSRARASADNTSTSSAVDEIIATAS 291

Query: 290 VLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQ 349
            +G +E  +      ++ +  ++       I V+      ++  L   +E SY +T  ++
Sbjct: 292 RVGSTEARVKAATQQIEIQVGLLRRAQINMIAVDAAEVAQKVKALETMLEASYTLTDMIR 351

Query: 350 KLSILNYL 357
           +LS++NYL
Sbjct: 352 RLSLINYL 359


>gi|13472594|ref|NP_104161.1| flagellar hook-associated protein FlgL [Mesorhizobium loti
           MAFF303099]
 gi|14023340|dbj|BAB49947.1| flagellar hook-associated protein 3 (HAP3); FlgL [Mesorhizobium
           loti MAFF303099]
          Length = 347

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/354 (26%), Positives = 166/354 (46%), Gaps = 9/354 (2%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T +S++++   M      +  D VK  +E  TG+ +D GL LG R    + + ++ + + 
Sbjct: 2   TSVSSAALTNAMRYQQMRMQADLVKATKESSTGRVADVGLALGGRTAQSVTFSRDLDRLN 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             + SN LVT RL+++Q  L  +  + Q  +  L     G   N    +       + + 
Sbjct: 62  VIVDSNGLVTARLASTQTSLGQLSGVAQTFLSALTTASSGDNSN---SLTQSTGLTTLQQ 118

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             +  N +  G+YLF+G N+  KP+N +    S AK +FD                    
Sbjct: 119 LTSILNTSVNGEYLFAGTNTDVKPINDFTAAGSAAKAAFDASFVAKFG------FTPTDP 172

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             +++ A QM DFI            W  N SNA+D  I  RI   E  + S + N  GI
Sbjct: 173 AAANITAAQMDDFITNDVAPQFLGAGWQTNMSNATDQQIVSRIALNETTETSTSANSDGI 232

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           R +   A + +  +S N++  A++ +     + V + LSGI + ++  GI +K +++   
Sbjct: 233 RKLAMAAAMVSSLMSSNISRAAKDSIVTHSQTLVGEALSGIAQVQSETGIVQKRVSDASD 292

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++ + ++ + +I     V+  TA  +++ L   IE S+ +T +LQ+LS+LNYL
Sbjct: 293 RMKTQIDLFERHILDLEAVDPATAATRVADLTQHIETSFALTARLQQLSLLNYL 346


>gi|90422626|ref|YP_530996.1| flagellar hook-associated protein FlgL [Rhodopseudomonas palustris
           BisB18]
 gi|90104640|gb|ABD86677.1| putative flagellar hook-associated protein [Rhodopseudomonas
           palustris BisB18]
          Length = 347

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 160/357 (44%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M TT IST+SI   + I   +      +  +E  TG+++D GL LGA     +    E  
Sbjct: 1   MATTFISTNSISTTLRISAMKSQAALSRATKEATTGRNADVGLSLGALAGRDVVLRAELL 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
           ++ + + +N LV  RL T+Q  +  +    +     L+     +       I A     +
Sbjct: 61  NVDKLVDTNGLVGGRLDTAQQRVDELIDTAKSFQKDLLA---ARNSAGGGTIIAQSASAN 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +  ++  N+T +GQYLF GIN++ +P+  Y    S +K + D               A 
Sbjct: 118 LQGLISTLNVTMDGQYLFGGINTATRPILDY-AAGSASKTAVDAAFSATFG------FAQ 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               VS + A  M  F+        DD  W  NWS A+D  ++ RI  T+ ID SA+ N 
Sbjct: 171 NSPLVSGITAADMQSFLDTTFQAQFDDPAWGTNWSTATDQVMRSRISTTQTIDSSASANE 230

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
              R +     + ++  +  L   A   +    +  + + ++ +    A +G +++    
Sbjct: 231 PAFRKLAKAYTMLSDLGTSGLNQSAFQTVIDAAIEDIGEAINDLAGVGAKIGTAQEQTTG 290

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               L+ + ++I   I+    V+   A  +++ L +++EMS  +T ++Q+LSILNYL
Sbjct: 291 ATERLKVQGDLITQQINAMEQVDPTEASVRVTNLKSQLEMSLALTARIQQLSILNYL 347


>gi|121602544|ref|YP_989381.1| flagellar hook-associated protein FlgL [Bartonella bacilliformis
           KC583]
 gi|120614721|gb|ABM45322.1| putative flagellar hook-associated protein 3 (HAP3) [Bartonella
           bacilliformis KC583]
          Length = 360

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 22/369 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+   IST  +         +   + ++   E+VTGQ  D GL LG +   +++ + + N
Sbjct: 1   MRIQSISTYVLNNSQRDTIAKGQSELMQAAYELVTGQLYDPGLTLGRKTGRLVDIQNQMN 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQD-----MVGPLVILLEGKTDNNKFPINAG 115
            +    ++N L   R+S++QA + S+     D      +     +L G   N        
Sbjct: 61  FLEGFSNTNKLALSRMSSAQAAIQSLIAAGDDETAPGALTLFNNMLVGDAANQTPSAAQA 120

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKD-SLAKKSFDQMLQGFLEENS 174
           +  ++  SF++  N +  G Y+F G N+++ PLN Y     S   K        FL    
Sbjct: 121 VAENALASFISALNTSYNGDYIFGGTNTTQPPLNAYKVGGESGPSKVVHDAFTTFL---- 176

Query: 175 KSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI-KDTEGID 233
                        + A+ M  FI ++     D+E ++  +SNA D +I+ RI  + E ++
Sbjct: 177 ------DGRNPEDLTAEDMDKFIDEVFSTLFDEENFSKIFSNAKDGSIEKRIGPNGETVN 230

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKML-----STVQQGLSGIIEQR 288
           V+A+ N +G RD M   ++  EF    L+  A+  L  K       ++    ++ II   
Sbjct: 231 VAASANEKGFRDAMKNMILVAEFGDIGLSKEAQEALFAKARNSSDQTSTTTAINEIIATA 290

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           + LG +E  I      ++ + N++       IGV+   A  +L  L   + +SY +T ++
Sbjct: 291 SRLGSTEARIKGATKQIEIQTNLLKGQQIDMIGVDSTEAGQRLKALEAMLNLSYTLTARI 350

Query: 349 QKLSILNYL 357
            +LS++NYL
Sbjct: 351 SQLSLVNYL 359


>gi|218462423|ref|ZP_03502514.1| flagellar hook-associated protein FlgL [Rhizobium etli Kim 5]
          Length = 332

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 95/342 (27%), Positives = 160/342 (46%), Gaps = 13/342 (3%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            ++      K   E  TG  +D G+ LG      +++ +E + I     SNSLV+ R+ +
Sbjct: 1   IRQAQNQMTKATMEATTGVYADIGVSLGGNAARSVDFTRETDRIDSIKASNSLVSARMES 60

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           SQ  LS M+ +   +V  L  L +G  D     +       +  + +  AN    G+YLF
Sbjct: 61  SQLGLSKMKDVGDGLVSKLTAL-QGSKDPGSITVAIQSATSALSTMMDTANTMVNGEYLF 119

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
           SGIN+  +PL    T  S A  +           NS +        VS +   +M  FI 
Sbjct: 120 SGINTDVQPLTDKTTATSAAIVT---------ALNSYAAALVPPKAVSDLTGAEMQTFIT 170

Query: 199 QLEDKFSDDEYWA---NNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTE 255
              +       W      WS AS  N+  RI ++E I+ S N N  G+R     +V+ + 
Sbjct: 171 TTVEPMFSQANWTNAATGWSQASSQNMTSRISNSEVIESSTNANSEGMRYFALASVMTSA 230

Query: 256 FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
            L +NL+  A   ++K+ +S   +  SG++ Q + LG+S++ + +    L  ++NII   
Sbjct: 231 LLGQNLSTDAMTTVSKQAISYTAKATSGLVTQASQLGLSQERVKKSNDALDAQSNIIKNK 290

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    GV+ + A   + TL  ++E +Y I +K+Q+LS++NYL
Sbjct: 291 LVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQLSLVNYL 332


>gi|115523195|ref|YP_780106.1| flagellar hook-associated protein FlgL [Rhodopseudomonas palustris
           BisA53]
 gi|115517142|gb|ABJ05126.1| flagellar hook-associated 3 family protein [Rhodopseudomonas
           palustris BisA53]
          Length = 347

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 159/357 (44%), Gaps = 10/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M TT IS+++I   +     +      +  +E  TG+ +D GL LGA     +    E  
Sbjct: 1   MATTFISSNAITTTLRNAAMKSQVAVSRATKEATTGRLADVGLSLGALAGRDVVLRAELL 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + + +N LV+ RL T+Q  +  + +  +     L+     +   N   + A     +
Sbjct: 61  DVDKLVDTNGLVSGRLDTAQQRVGELIETAEAFQKDLLA---ARNSANGGNVIAQSAGAN 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S +   N+   GQYLF G N+  KP+  Y    S +K + D     +   +  S    
Sbjct: 118 LQSLIATLNVAMNGQYLFGGTNTGVKPMVEY-AAGSTSKTAIDTTFASYFGFSQAS---- 172

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               VS + A  M  F+         D  W  NWS A D  ++ RI  T+ ID S + N 
Sbjct: 173 --PSVSGITAANMQTFLTTDLQTEFADPAWGTNWSTALDQPMRSRISTTQTIDSSVSANE 230

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R +     +  +  + +L   A  V+    ++ V + ++ +    A LG +++   +
Sbjct: 231 PGFRKLAKAYTMLNDLGTGSLNQTAFQVVIDTAITAVGEAINDLAGVGARLGTAQQQTTD 290

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               L+ + ++I   I+    V+   A  +++TL N++EMS  +T ++Q++SIL YL
Sbjct: 291 AISRLKVQGDLITEQITAMEKVDPTEASVRVTTLNNQLEMSLALTARIQQMSILKYL 347


>gi|170748123|ref|YP_001754383.1| flagellar hook-associated protein FlgL [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654645|gb|ACB23700.1| flagellar hook-associated 3 family protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 351

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/359 (23%), Positives = 158/359 (44%), Gaps = 10/359 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVT-GQSSDYGLQLGARVTSILEWEQEK 59
           MKT+ IST++++      +  L  +  K + EM   G+ +D GL+LG +    L+  Q  
Sbjct: 1   MKTSYISTATLWNSPRSHSARLQAEIAKANVEMDNDGRFADVGLELGHKTGLDLDLRQAV 60

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
           + +  +   N L T RL+ +Q  L+ ++   +     L ++  GK   +     A     
Sbjct: 61  DDLKAQQSRNKLTTLRLTATQEALNQIRADGESF---LALVAPGKPFASSGAELAQGAAA 117

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTK-DSLAKKSFDQMLQGFLEENSKSLL 178
              +     N +  GQ LF+GIN+  +P+    T     AK +FD   Q          L
Sbjct: 118 RLSALTGHLNTSVAGQALFAGINTDHRPIADSQTGLPPAAKSAFDTAFQTAFG-----FL 172

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
            G   +  ++ A QM  F+         D  W   WS+AS+ NI+  +  TE  + S N 
Sbjct: 173 PGTSPDALNITAAQMQAFLDGPAAALFADPQWGATWSSASNVNIRSELGGTETAETSVNA 232

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           N++ +R +  +  +G++    +L    ++ +  KM +       G+ + +A LG  +  +
Sbjct: 233 NVQTVRQLAQLYTLGSQIGLSSLAPETQSAVFDKMRNLAGVATFGLTQIQADLGTVQARM 292

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 L  K   +         V+      + S L  ++++SY +T +L+K+++++Y+
Sbjct: 293 KGIDTQLDAKIKGLTLGYRSFEDVDPVELKTRQSNLQTQLQISYSLTNELRKMNLIDYV 351


>gi|27381967|ref|NP_773496.1| flagellar hook-associated protein FlgL [Bradyrhizobium japonicum
           USDA 110]
 gi|27355137|dbj|BAC52121.1| flgL [Bradyrhizobium japonicum USDA 110]
          Length = 352

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/357 (22%), Positives = 151/357 (42%), Gaps = 6/357 (1%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    IST  +   +            K  +E  TG+ +D GL+LGA     L    + +
Sbjct: 2   MSANYISTLMLSSSLRTSITNNQAALSKASKEATTGRFADVGLELGATTGGDLTLRADWS 61

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
              + + +N LV+ RL  +Q  ++ +       +  L+     ++ +N   I       +
Sbjct: 62  FADQLVDTNELVSGRLDVTQTRITQLGTTATSFLKDLIA---ARSTDNGGRIVLPPASAN 118

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +  +   N++  G YLFSGIN+   P+  Y T  S +K   D          +      
Sbjct: 119 LQDLIGALNVSYNGSYLFSGINTQNMPITAYAT-GSASKNQVDADFAAAPP--TGFGFPQ 175

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               VSS+   QM  F+    D       W  NWS+A+D  ++ RI  TE  D S + N 
Sbjct: 176 SSASVSSITPAQMQTFLNTTFDAEFASPAWNTNWSSATDQVMQSRISTTEVADTSVSANQ 235

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R +     +  +  +  L+     V+  K +  +   ++ +      +G  ++ I  
Sbjct: 236 TGFRKLAEAYTMMADLGNAKLSQETFQVVVDKAIGLIGGAITDLATLGGGVGTVQQRITS 295

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               L+ + +I++  I     V+   A  +++TL  +I+ +  +T++LQK+S++NYL
Sbjct: 296 ATNKLKTQQDILNNQIVGMEKVDPTEASVRVNTLQTQIQTALALTSQLQKISLINYL 352


>gi|188579927|ref|YP_001923372.1| flagellar hook-associated protein FlgL [Methylobacterium populi
           BJ001]
 gi|179343425|gb|ACB78837.1| flagellar hook-associated 3 family protein [Methylobacterium populi
           BJ001]
          Length = 350

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 11/358 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M T  IS+ +++         L  D     +E+ TG+ +D G  LG  V       ++  
Sbjct: 2   MTTGFISSLNLWNAPRTGAARLQTDLATATKEIATGRFADVGASLGGGVVESFGLRRQSA 61

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A    SN+  + RL  +Q+ L  +Q   +  +  L  L      + +    A   R  
Sbjct: 62  VLAALTQSNTAASFRLEATQSALKEIQSAAEATLNELTAL----PADQRAKTVAETARGR 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGY-FTKDSLAKKSFDQMLQGFLEENSKSLLA 179
             +     N +  GQ++F G +S   PL  Y  +  S AK + D     F         A
Sbjct: 118 LVALAGALNTSAGGQFVFGGTDSGTAPLTPYEGSPPSAAKAAVDDAFTDFFG------FA 171

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                 +++   ++  F+         +  W+  WS+AS   I  +I  TE    S + N
Sbjct: 172 PGSAAAAAITPTELKGFLDGPLAGLFTEVNWSRTWSSASSRTIDSQISLTETATTSTSAN 231

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
               R +    VI +      L+  A+ V T K++  + Q   G+   RA LG ++  I 
Sbjct: 232 AEPFRKLGMAYVIASGLGLSGLSPEAQEVATVKVMDLLGQVSGGLTTLRADLGRTQSQIT 291

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    +  +  ++   I     V+   A A++  +  +++MSY +T +L+ LS++N++
Sbjct: 292 DANARMAKQTTLLTGQIRDLESVDPAEAKARVDAITTQMQMSYGLTAQLRSLSLINFI 349


>gi|256059806|ref|ZP_05450001.1| flagellar hook-associated protein FlgL [Brucella neotomae 5K33]
 gi|261323786|ref|ZP_05962983.1| flagellar hook-associated protein FlgL [Brucella neotomae 5K33]
 gi|261299766|gb|EEY03263.1| flagellar hook-associated protein FlgL [Brucella neotomae 5K33]
          Length = 334

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 24/357 (6%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q     + +  Q+ +G L                A   R  
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA---GANNSGETAKTVAKSARSM 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q           A 
Sbjct: 118 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFG------FAM 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V++++  +M  F++    +  +D  WA NWS+ASD               S + N 
Sbjct: 171 DDPQVANISGDEMKAFLEGDFAEQFNDANWAANWSDASD--------------TSISANA 216

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G R  +  AV+ TEF    L   A + LT + L    Q ++    ++  LG+++     
Sbjct: 217 DGFRKTVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQTTLGLAQSRTEA 276

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  I++  +     V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 277 ATTRIAAQQKILNQSVLNLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLNYL 333


>gi|218528729|ref|YP_002419545.1| flagellar hook-associated protein FlgL [Methylobacterium
           chloromethanicum CM4]
 gi|218521032|gb|ACK81617.1| flagellar hook-associated 3 family protein [Methylobacterium
           chloromethanicum CM4]
          Length = 350

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 149/358 (41%), Gaps = 11/358 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M T  IS+ +++         L  +      E+ TG+ +D G  LG  V       ++  
Sbjct: 2   MTTGFISSLNLWNAPRTGVSRLQSELANATREIATGRFADVGATLGGGVAGAFGLRRQSA 61

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A    SN+  T RL+ +Q  L+ ++   +  +  L  L      + +        R  
Sbjct: 62  VLASLTQSNAAATSRLAATQGALTEIRSSAETTLNELTALPT----DQRAKTLVDSARGR 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGY-FTKDSLAKKSFDQMLQGFLEENSKSLLA 179
             +     N +  GQ++F G NS   PL  Y  +  S AK + D++   F         A
Sbjct: 118 LAALAGTLNTSTNGQFVFGGTNSGAAPLASYEGSPTSAAKTAVDKLFTDFFG------FA 171

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                 S++   Q+  FI         +  W+  WS AS   +  +I  TE +  S + N
Sbjct: 172 PGSTAASTITPNQLQGFIDGPLAGLFTEVNWSRTWSGASSRTLDSQISLTETVTTSVSAN 231

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
               R +    VI +      L+  A+NV T K++  + Q    +   +A LG ++  I 
Sbjct: 232 AEPFRKLGMAYVIASGLGLSGLSQEAQNVATGKVMDILGQVSGSLTTMQADLGRAQSQIT 291

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           E    +  +  +++  I     V+   A +++  +  +++MSY +T +L+ LS++N++
Sbjct: 292 EANARMAKQTALLNGQIRDLENVDPAEAKSRVDAITTQMQMSYGLTAQLRSLSLINFI 349


>gi|163850125|ref|YP_001638168.1| flagellar hook-associated protein FlgL [Methylobacterium extorquens
           PA1]
 gi|163661730|gb|ABY29097.1| flagellar hook-associated 3 family protein [Methylobacterium
           extorquens PA1]
          Length = 350

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 148/358 (41%), Gaps = 11/358 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M T  IS+ +++         L  +     +E+ TG+ +D G  LG  V       ++  
Sbjct: 2   MTTGFISSLNLWNAPRTGVSRLQSELANATKEIATGRFADVGATLGGGVAGAFGLRRQSA 61

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A    SN+  T RL+ +Q  L+ ++      +  L  L      + +        R  
Sbjct: 62  VLASLTQSNAAATSRLAATQGALTEIRSSADTTLNELTAL----PADQRAKTLVDSARGR 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGY-FTKDSLAKKSFDQMLQGFLEENSKSLLA 179
             +     N +  GQ++F G NS   PL  Y  +  S AK + D++   F         A
Sbjct: 118 LAALAGTLNTSTNGQFVFGGTNSGAAPLTSYEGSPTSAAKTAVDKLFTDFFG------FA 171

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                 S++   Q+  FI         +  W+  WS AS   +  +I  TE +  S + N
Sbjct: 172 PGSAAASTITPNQLQGFIDGPLAGLFTEVNWSRTWSGASSRTLDSQISLTETVTTSVSAN 231

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
               R +    VI +      L+  A+NV T K++  + Q    +   +A LG ++  I 
Sbjct: 232 AEPFRKLGMAYVIASGLGLSGLSQEAQNVATGKVMDILGQVSGSLTTMQADLGRAQSQIT 291

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           E    +  +  ++   I     V+   A +++  +  +++MSY +T +L+ LS++N++
Sbjct: 292 EANARMSKQTALLTGQIRDLENVDPAEAKSRVDAITTQMQMSYGLTAQLRSLSLINFI 349


>gi|300024586|ref|YP_003757197.1| flagellar hook-associated 3 family protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526407|gb|ADJ24876.1| flagellar hook-associated 3 family protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 351

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/357 (26%), Positives = 164/357 (45%), Gaps = 8/357 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           +  T ISTS++          +    V + +E+ TG+ +D GL LGA+    +   Q+ +
Sbjct: 2   LTPTFISTSALSSETKASIARIQHRLVDVQKELATGRHADVGLTLGAQTGVAVSLRQDIS 61

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I     +NSLV  R+  SQA L+++    Q  +  L       T +            +
Sbjct: 62  QIQSIKDTNSLVLTRMQASQAALNTLATTSQSFLNALTPAQSTSTMSGTI---VQQANAA 118

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N + +GQYLFSGINS  KPL+ YF     A               +K  ++ 
Sbjct: 119 MQSIQDQLNSSLDGQYLFSGINSDVKPLDDYFANPPAASAQAVNA-----AFVAKFGMSP 173

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               VS+++A  M DF++        D  W+ NWS+ASD ++  RI  TE  + S   N 
Sbjct: 174 SDPGVSAISASDMQDFLQNEFADLFSDPNWSANWSDASDKSVNSRISRTETANTSVTAND 233

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
           +  R +     +      +NL    +NV+ ++    V  G+ G+   +A LG++++ +++
Sbjct: 234 QTFRQLTQAFAMVAGLGFQNLNSSTQNVVLQQATQLVSNGIGGLTRVQAFLGVTQQRVSD 293

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  + + ++  IS    V+      Q+S L   +E +Y +T +L KLSI+++L
Sbjct: 294 ANDQIDTQIDFLEKSISNLESVDPAEVTTQISDLSTALEAAYSVTNRLSKLSIMDFL 350


>gi|240137259|ref|YP_002961728.1| FlgL protein [Methylobacterium extorquens AM1]
 gi|240007225|gb|ACS38451.1| FlgL protein [Methylobacterium extorquens AM1]
          Length = 350

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 11/358 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M T  IS+ +++         L  +      E+ TG+ +D G  LG  V       ++  
Sbjct: 2   MTTGFISSLNLWNSPRTGVSRLQSELANATREIATGRFADVGATLGGDVAGAFSLRRQSA 61

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A    SN+  T RL+ +Q  L+ ++      +  L  L      + +        R  
Sbjct: 62  VLASLTQSNAAATSRLAATQGALTEIRSSADTTLNELTAL----PADQRAKTLVDSARGR 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGY-FTKDSLAKKSFDQMLQGFLEENSKSLLA 179
             +     N +  GQ++F+G NS   PL  Y  +  S AK + D++   F         A
Sbjct: 118 LAALAGTLNTSTNGQFVFAGTNSGAAPLTSYEGSPTSAAKTAVDKLFTDFFG------FA 171

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                 S++   Q+  FI         +  W   WS AS   +  +I  TE +  S + N
Sbjct: 172 PGSAAASTITPNQLEGFIDGPLAGLFTEVNWNRTWSGASSRTLDSQISLTETVTTSVSAN 231

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
               R +    VI +      L+  A+NV T K++  + Q    +   +A LG ++  I 
Sbjct: 232 AEPFRKLGMAYVIASGLGLSGLSQEAQNVATGKVMDILGQVSGSLTTMQADLGRAQSQIT 291

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           E    +  +  ++   I     V+   A +++  +  +++MSY +T +L+ LS++N++
Sbjct: 292 EANARMSKQTALLTGQIRDLENVDPAEAKSRVDAITTQMQMSYGLTAQLRSLSLINFI 349


>gi|170744545|ref|YP_001773200.1| flagellar hook-associated protein FlgL [Methylobacterium sp. 4-46]
 gi|168198819|gb|ACA20766.1| flagellar hook-associated 3 family protein [Methylobacterium sp.
           4-46]
          Length = 344

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 96/358 (26%), Positives = 171/358 (47%), Gaps = 15/358 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+T+ IST S++      T  L  +S K  +E+ +G+ +D GL+LG+RV+  L    +++
Sbjct: 1   MQTSYISTQSLWNAPRSATARLQAESAKATQEVASGRYADVGLELGSRVSVSLALRGQQD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A     N L   RL  +QA L  +Q    D +  L+    G + + K    + +    
Sbjct: 61  QLAALKQDNGLTALRLDQTQATLKQLQAAADDTLKQLL----GASIDKKVSTISTLAATQ 116

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYF-TKDSLAKKSFDQMLQGFLEENSKSLLA 179
             +  +  N    GQYLF+G+N+ + PL  Y  +  S AK + DQ  Q            
Sbjct: 117 LAALTSALNGAANGQYLFAGLNTDKAPLTAYAGSPTSPAKAAVDQAFQAAFGS------- 169

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
               + +++   QMT F+     +  D+ +W   WS+AS   +  RI   E    S + N
Sbjct: 170 ---ADPATITPAQMTAFLNGPLAQLFDEAHWTATWSSASSDALTSRIAPDETARTSVSAN 226

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
              IR +    V+ +   +  ++   + V+  K+ S + QG  G++  +A LG  +  I 
Sbjct: 227 AEPIRSLAMAYVLASALKADTMSAATQTVIADKITSLLSQGSQGLVGLQADLGTVQARIK 286

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    +  + ++I + I    GV+   A  +L  L  +I+MSY +T++L++LS++NYL
Sbjct: 287 DANTRMDAQKSLIASRIDDLEGVDPAEAKTRLDRLNAQIQMSYSLTSQLRQLSLVNYL 344


>gi|254559270|ref|YP_003066365.1| FlgL protein [Methylobacterium extorquens DM4]
 gi|254266548|emb|CAX22312.1| FlgL protein [Methylobacterium extorquens DM4]
          Length = 350

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 149/358 (41%), Gaps = 11/358 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M T   S+ +++         L  +     +E+ TG+ +D G  LG  V       ++  
Sbjct: 2   MTTGFSSSLNLWNAPRTGVSRLQSELANATKEIATGRFADVGATLGGGVAGAFSLRRQSA 61

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A    SN+  T RL+ +Q  L+ ++      +  L  L      + +        R  
Sbjct: 62  VLASLTQSNAAATSRLAATQGALTEIRSSADTTLNELTAL----PADQRAKTLVASARGR 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGY-FTKDSLAKKSFDQMLQGFLEENSKSLLA 179
             +     N +  G+++F+G NS   PL  Y  +  S AK + D++ + F         A
Sbjct: 118 LAALAGTLNTSTNGRFVFAGTNSGAAPLTSYEGSPTSAAKTAVDKLFKDFFG------FA 171

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                 S++   Q+  FI         +  W+  WS AS   +  +I  TE +  S + N
Sbjct: 172 PGSAAASTITPNQLEGFIDGPLAGLFTEVNWSRTWSGASSRTLDSQISLTETVTTSVSAN 231

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
               R +    VI +      L+  A+NV T K++  + Q    +   +A LG ++  I 
Sbjct: 232 AEPFRKLGMAYVIASGLGLSGLSQEAQNVATGKVMDILGQVSGSLTTMQADLGRAQSQIT 291

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           E    +  +  ++   I     V+   A +++  +  +++MSY +T +L+ LS++N++
Sbjct: 292 EANARMSKQTALLTGQIRDLENVDPAEAKSRVDAITTQMQMSYGLTAQLRSLSLINFI 349


>gi|254505260|ref|ZP_05117411.1| Putative flagellar hook-associated protein 3 [Labrenzia alexandrii
           DFL-11]
 gi|222441331|gb|EEE48010.1| Putative flagellar hook-associated protein 3 [Labrenzia alexandrii
           DFL-11]
          Length = 339

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 147/347 (42%), Gaps = 9/347 (2%)

Query: 11  IFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNS 70
           + +         +    KL  E+ +G+  D GL LGAR    +    E N +     +N+
Sbjct: 2   LADSSRRNILSQSTLVNKLGVELSSGRKFDIGLDLGARTGESVSVRSEFNFLNGIKDTNA 61

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM 130
           L   RL+ SQA +  M    Q  +  LV L E   D     I       +    V+  N 
Sbjct: 62  LAESRLAVSQAAMDDMLTDAQAFMATLVALKE---DPTTADIVKADAEGNMGLLVSRLNS 118

Query: 131 TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNA 190
              G ++F GINS+  P   Y    S  K + D         +        +  V  + A
Sbjct: 119 QQNGYFIFGGINSANIPFADYSDPTSPNKVAADAAYLAEFGFD------QSNPGVPGITA 172

Query: 191 QQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVA 250
             MT ++    D       W  +WS ASD  +  RI  +E +  SA+ N    R++    
Sbjct: 173 AAMTTYLSGNFDAMFQSPNWEASWSTASDTPLSSRISASETVATSASANETAFRELAKAY 232

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
            + ++  ++ L+D A  V+    + T+   ++ +      +G  ++ +      L  + N
Sbjct: 233 TMMSDLGNEALSDEAYKVVVDTAIQTLGSAMNNLTSVMGKMGTVQEQVKLAGERLDVQTN 292

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           I++T I+    V++     +L+T + ++E +Y +T+++Q LS+LN++
Sbjct: 293 ILNTRINDLELVDKEETSVRLTTALTQLETTYAVTSRMQGLSLLNFI 339


>gi|323136999|ref|ZP_08072079.1| flagellar hook-associated protein FlgL [Methylocystis sp. ATCC
           49242]
 gi|322397760|gb|EFY00282.1| flagellar hook-associated protein FlgL [Methylocystis sp. ATCC
           49242]
          Length = 348

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 155/352 (44%), Gaps = 10/352 (2%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST SI   +     EL +D  +  +E+ TG+ +D GL LG R           +     L
Sbjct: 6   STYSITTSLRRTLVELQRDLDRSQKELATGRHADLGLALGMRAGLSYSLGDTYDTAQSIL 65

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            +N LV+ RL T+Q  ++++    Q M   L+  L+   D           R S  +F++
Sbjct: 66  ATNDLVSTRLDTTQTAIANLLSNAQAMRATLMSSLDDGGDVGAIETQ---ARVSLSNFIS 122

Query: 127 FANMTDEGQYLFSGINSSEKPLNGYFT-KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             N  D   +LF+G+NS   P+N YF    S  K + D               A     V
Sbjct: 123 TLNSGDGDSFLFAGVNSEVAPINNYFADPPSPNKVALDAAFIANFG------FAQTDPRV 176

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           + +   QM  F+          E W  +WSNASD  ++ +I  +  ID S   N   ++ 
Sbjct: 177 ADITGDQMEAFLSGPMTALFAPEAWKTDWSNASDQPLRSQISMSVTIDTSVTANAPALQK 236

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
           +     + T+  +  +   A   L K     +   +S +++ +A +G+ ++N+      +
Sbjct: 237 LAMAYTMMTDLGASGMNSAAYKALLKSATEVIDDSISALLKTQAQVGVMQRNVVNANQTM 296

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++N I+  ++    V+   A A+++ L+ +IE +Y +T K+ +LS+  YL
Sbjct: 297 TIQSNAIEMNLNSLETVDLTEAAARVNGLMTQIETAYTLTAKITQLSLAKYL 348


>gi|114706626|ref|ZP_01439527.1| flagellar hook-associated protein L [Fulvimarina pelagi HTCC2506]
 gi|114538018|gb|EAU41141.1| flagellar hook-associated protein L [Fulvimarina pelagi HTCC2506]
          Length = 350

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 92/360 (25%), Positives = 169/360 (46%), Gaps = 13/360 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    +S+ S+          + ++ V   +E+ TG+ +D G  LG  V   +    E +
Sbjct: 1   MTNFLVSSMSLTGAPRASVSRVQQELVIAQKEVSTGRYADVGKSLGTSVARTISMRAELS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
           ++ +   +N+ + +R  T QA L S   + +     L  L+ G   +  F IN      +
Sbjct: 61  NLEKLTTANTAIGQRFETMQAALGS---VAETGESLLSSLISGSGTSVGFDINQRSATAN 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKD---SLAKKSFDQMLQGFLEENSKSL 177
               V   + +   +Y+FSG  +   P+      D   S A  S D   Q ++  N+   
Sbjct: 118 IGQLVGALSGSFGSRYIFSGAKTDTPPIKADLAADYGTSAAFASVDAAWQAYVTANAGG- 176

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237
                 + + + A QM  F+    +   DD  WA NWS+ASD+    RI + + +  SA+
Sbjct: 177 ------DPAQITAAQMESFLANEFEAVFDDANWAANWSDASDNQTVSRIGENDMMRSSAS 230

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N +  R+IM   V+ + F  ++L D  R VL    + T+ +GLS + + R+ +G+ E+ 
Sbjct: 231 ANDQSFRNIMKSYVMLSNFSGESLADETRQVLASSSIETLSKGLSQLTDLRSDIGLGEER 290

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           I      L+ +  I+   I +   ++ + A  ++ +L+N +EMSY +T ++ +LS+LN+L
Sbjct: 291 IERANEGLKVQTAILKIGIGEEEEIDIYEAKTRIDSLMNTLEMSYALTARVSRLSLLNFL 350


>gi|241113582|ref|YP_002973417.1| flagellar hook-associated 3 family protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861790|gb|ACS59456.1| flagellar hook-associated 3 family protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 348

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/360 (23%), Positives = 161/360 (44%), Gaps = 15/360 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK + +S+S++   + +   +      +   E  TG  +D G+ LG      +       
Sbjct: 1   MKASFVSSSAMQNVLRLTISQSQNKLQQASTEATTGTYADIGVSLGNGAAKSINLTSAIA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
             A    SN++V  R+  SQA LSS++     +V  L  L +   D     +       +
Sbjct: 61  QAASFKTSNAVVELRMDASQAALSSLKDAGDSLVSNLTAL-QASQDTTSIAVALQTAGAT 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
               V+ AN +  G++LF G N   +PL+   +  S A  S                  G
Sbjct: 120 ISQLVSTANTSVNGEFLFGGTNLDSQPLSDQSSAVSDAIVSA-----------LNDYATG 168

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDVSAN 237
              +V+ +  +++  FI    +    +  W +    WS AS  ++  RI  +E I  S N
Sbjct: 169 LGKDVNELTGEEIGSFITDTVEPMFSESAWTDTSDGWSTASSTDMTSRISGSETITSSTN 228

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N  G+R +   +V+ +    ++L+  A++ +  K ++   Q  SGI+ Q++ LG++++ 
Sbjct: 229 ANSEGMRYLALASVVVSALFGQDLSSDAQSTVASKAIAYAAQATSGIVTQQSELGLAQER 288

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +    L  ++ ++   +    GV+ + A   ++ L  ++E +Y + +KLQ LS++NYL
Sbjct: 289 LEKANDALDAQSTLLQGNLVDLQGVDTYEASTLVNQLQTQLETAYTLVSKLQSLSLVNYL 348


>gi|327192296|gb|EGE59261.1| flagellar hook-associated protein FlgL [Rhizobium etli CNPAF512]
          Length = 348

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 162/360 (45%), Gaps = 15/360 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK + +S+S++   + +   +      +   E  TG  +D G+ LGA     +      +
Sbjct: 1   MKASFVSSSAMQNVLRLTISQSQTKLQQASTEATTGTYADIGVSLGADAAKSINLTGAID 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
             A     N++V  R+  SQ  LSS++     +V  L  L +   D     +       +
Sbjct: 61  QAASFKAGNAVVALRMEASQTALSSLKDAGDSLVSNLTAL-QASQDTTSIAVALQTASAT 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
               ++ AN +  G++LF G N   +PL     + +    +    L G+          G
Sbjct: 120 ISQLISTANTSVNGEFLFGGTNLDNQPLTD---QSATVSDTIVTALTGYA--------TG 168

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDVSAN 237
              +V+ +  +++  FI    +    +  W +    WS AS  ++  RI  +E I  S N
Sbjct: 169 LGKDVNELTGEEIGSFITDTVEPLFSESAWTDASTGWSTASSTDMTSRISGSETITSSTN 228

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N  G+R +   +V+ +    ++L+D A++ +  K +    Q  SGI+ +++ LG+S++ 
Sbjct: 229 ANSDGMRYLALASVVVSALFGQDLSDDAKSTVASKAIGYAAQATSGIVTEQSQLGLSQER 288

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +    L  +++++   +    G + + A   ++ L  ++E +Y + +KLQ LS++NYL
Sbjct: 289 LEKADDALDAQSSLLQGKLVDLQGADTYEASTLVNQLQTQLETAYTLVSKLQSLSLVNYL 348


>gi|209547528|ref|YP_002279446.1| flagellar hook-associated protein FlgL [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538772|gb|ACI58706.1| flagellar hook-associated 3 family protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 348

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 161/360 (44%), Gaps = 15/360 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK + +S+S++   + +   +      +   E  TG  +D G+ LGA     +      +
Sbjct: 1   MKASFVSSSAMQNVLRLTISQSQTKLQQASTEATTGTYADIGVSLGAGTAKTISLTSAID 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
             A    SN++V  R+  SQ  LSS++     +V  L  L +   D     +       +
Sbjct: 61  QAASFQTSNAVVELRMDASQTALSSLKDAGDSLVSNLTAL-QASQDTTSIAVALQTAGST 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
               ++ AN +  G++LF G N   +PL     + S    +    L  +          G
Sbjct: 120 ISQLISTANTSVNGEFLFGGTNLDSQPLTD---QSSTVSDTIVTALGDYA--------TG 168

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDVSAN 237
              +V+ +   ++  FI    +    +  W +    WS AS  ++  RI  +E I  S N
Sbjct: 169 LGKDVNELTGDEIGTFITGTVEPMFSESGWTDASAGWSTASSTDMTSRISSSETITSSTN 228

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N  G+R +   +V+ +    ++L+  A++ +  K +    Q  SGI+ Q++ LG+S++ 
Sbjct: 229 ANSEGMRYLALASVVVSALFGQDLSSDAQSTVATKAIGYAAQATSGIVTQQSQLGLSQER 288

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +    L  +++++   +    GV+ + A   ++ L  ++E +Y + +KLQ LS++NYL
Sbjct: 289 LEKANDALDAQSSLLQGKLVDLQGVDAYEASTLVNQLQTQLETAYTLVSKLQGLSLVNYL 348


>gi|116248738|ref|YP_764579.1| flagellar hook-associated protein FlgL [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253388|emb|CAK11776.1| putative flagellar hook associated protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 348

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 84/360 (23%), Positives = 161/360 (44%), Gaps = 15/360 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK + +S+S++   + +   +      +   E  TG  +D G+ LGA     +       
Sbjct: 1   MKASFVSSSAMQNVLRLTISQSQNKLQQASTEATTGTYADSGVSLGAGAAKSINLTSAIA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
             A    SN++V  R++ SQ  LSS++     +V  L  L +   D     +       +
Sbjct: 61  QAASFKMSNAVVELRMNASQTALSSLKDAGDSLVSNLTAL-QASQDTTSIAVALQTASAT 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
               V+ AN +  G++LF G N   +PL+   +  S    S                  G
Sbjct: 120 ISQLVSTANTSVNGEFLFGGTNLDSQPLSDQSSAVSDTIVSA-----------LNDYATG 168

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDVSAN 237
              +VS +  +++  FI    +    +  W +    WS AS  N+  RI  +E I  S N
Sbjct: 169 LGKDVSELTGEEIGSFITDTVEPMFSESAWTDASEGWSAASSTNMTSRISGSETITSSTN 228

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N  G+R +   +V+ +    ++L+  A++ +  K ++   Q  SGI+ Q++ LG++++ 
Sbjct: 229 ANSEGMRYLALASVVVSALFGQDLSSDAQSTVASKAIAYAAQATSGIVTQQSELGLAQER 288

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +    L  ++ ++   +    GV+ + A   ++ L  ++E +Y + +KLQ LS++NYL
Sbjct: 289 LEKANDALDAQSTLLQGNLVDLQGVDTYEASTLVNQLQTQLETAYTLVSKLQSLSLVNYL 348


>gi|218662014|ref|ZP_03517944.1| flagellar hook-associated protein FlgL [Rhizobium etli IE4771]
          Length = 371

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 149/348 (42%), Gaps = 15/348 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK + +S+S++   + +   +      +   E  TG  +D G+ LGA     +      +
Sbjct: 36  MKASFVSSSAMQNVLRLTISQSQTKLQQASTEATTGTYADIGVSLGAGAAKSINLTSAID 95

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
             A    SNS+V  R+  SQ  LSS++     +V  L  L +   D     +       +
Sbjct: 96  QAASFKTSNSVVALRMEASQTALSSLKDAGDSLVSNLTAL-QASQDTTSIAVALQTASAT 154

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
               ++ AN +  G++LF G N   +PL       S    +                  G
Sbjct: 155 ISQLISTANTSVNGEFLFGGTNLDNQPLTDQSATVSDTIVTA-----------LTDYATG 203

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDVSAN 237
              +V+ +  +++  FI    +    +  W +    WS AS  ++  RI  +E I  S N
Sbjct: 204 LGKDVNELTGEEIGSFITDTVEPMFSESAWTDASSGWSTASSTDMTSRISGSETITSSTN 263

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N  G+R +   +V+ +    ++L+D A++ +  K +    Q  SGI+ Q++ LG+S++ 
Sbjct: 264 ANSDGMRYLALASVVVSALFGQDLSDDAKSTVASKAIGYAAQATSGIVTQQSQLGLSQER 323

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMIT 345
           + +    L  +++++   +    GV+ + A   ++ L  ++E +Y + 
Sbjct: 324 LEKADDALDAQSSLLQGKLVDLQGVDTYEASTLVNQLQTQLETAYTLV 371


>gi|217976242|ref|YP_002360389.1| flagellar hook-associated protein FlgL [Methylocella silvestris
           BL2]
 gi|217501618|gb|ACK49027.1| flagellar hook-associated 3 family protein [Methylocella silvestris
           BL2]
          Length = 347

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/356 (21%), Positives = 150/356 (42%), Gaps = 9/356 (2%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            ++ IST SI   +     ++  +      E  TG  +D GL L ++    +  + +   
Sbjct: 1   MSSYISTQSISSSLRQSVLKMQAELSSAQTEAATGNHADIGLSLASKTGQSVSLQAQAAM 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           +     +NS+   R++  Q  L  +Q   Q ++  L   L                 D+ 
Sbjct: 61  LQTLSETNSIALTRMNMIQNQLGDLQSGAQSLLNSL---LSTNGSAQNAATIEASGADNL 117

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           +  +   N T  G YLF+GIN++  PL  Y+   + +K + D              ++  
Sbjct: 118 KGLIASLNSTLNGDYLFAGINTATAPLTDYYATGASSKTAVDAAFSTAFG------MSQT 171

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
              V+ ++A  M DF+            W N+WS+ASD  I   I     +  S + N  
Sbjct: 172 SSSVAGISASAMQDFLDGPFAALFQGSNWTNDWSSASDEAIASSISPGGAVISSVSANQS 231

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
             RD+     + ++   +  +    +VL  K    +  G+S + + +A LG+++ ++++ 
Sbjct: 232 AFRDLAEAYTMLSDLGGEKYSQATYDVLVGKARDLLTDGISALSDAQAGLGVAQSSVSDA 291

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              +  + NI+ + I     +  +    ++S L  +I+ +Y +T+ LQ LS++ YL
Sbjct: 292 NTQMSLQMNILSSQIGNLESINGYEVQVRISDLQTQIQTAYSLTSHLQDLSLVKYL 347


>gi|182680455|ref|YP_001834601.1| flagellar hook-associated protein FlgL [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636338|gb|ACB97112.1| flagellar hook-associated 3 family protein [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 348

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 152/340 (44%), Gaps = 9/340 (2%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
             +       K   E+ TG+ +D GL LG+   + +   Q++N +     +N + + RL 
Sbjct: 18  TIQASQAKLSKTQIEISTGRYADVGLALGSGTAAGISLRQQENVLKTITTTNGIASTRLD 77

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
           T+Q+ LSS+    Q  +  L+       D     +     + + +S     N T  G YL
Sbjct: 78  TTQSVLSSIGANAQSFLESLLGATSATGD---PAVLQASAQVNLQSLTASLNTTLNGDYL 134

Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
           F G+NS ++P+  Y T  S    + DQ  Q          ++     VSS+ A  M +F+
Sbjct: 135 FGGVNSGQQPITDYSTPGSSNGNALDQAFQTTFG------ISQSDSAVSSITASNMQNFL 188

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                       W+ NWS ASD  +  +I D +  + S + N +  +++     +  +  
Sbjct: 189 DSSFANLFQGSNWSTNWSQASDTVLTTQINDHQTANTSVSANEKAFKELFSAYTMIGQLG 248

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
           + NL   A   +  + ++TV+  +S +   +  +G+ +  I      +  + N + + ++
Sbjct: 249 TANLNSSAFKTVVNQAVTTVKSAISDLTNIQGGVGLVQNQIVNANDTMSLRMNYLTSQVN 308

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               V+   A  +++ L  +IE +Y +T++L KLS++NYL
Sbjct: 309 TLESVDPAEASTRMTALQTQIETAYSLTSQLHKLSLVNYL 348


>gi|86360904|ref|YP_472791.1| flagellar hook-associated protein FlgL [Rhizobium etli CFN 42]
 gi|86285006|gb|ABC94064.1| flagellar hook-associated protein [Rhizobium etli CFN 42]
          Length = 348

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 158/360 (43%), Gaps = 15/360 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK + +S+S++   + +   +      +   E  TG  +D G+ LG+     +       
Sbjct: 1   MKASFVSSSAMQNVLRLTISQSQNKLQQASTEATTGTYADIGVSLGSGAAKSINLTSAIA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
             A    SNS+V  R+  SQ  LSS++     +V  L  L +   D     +       +
Sbjct: 61  QAASFKTSNSVVALRMEASQTALSSLKDAGDSLVSNLTAL-QASQDTTSIAVALQSANAT 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
               ++ AN +  G++LF G N   +PL     + S    +    L  +          G
Sbjct: 120 ISQLISTANTSVNGEFLFGGTNLDSQPLTD---QSSAVSDTIVTALNDYA--------TG 168

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASD---HNIKYRIKDTEGIDVSAN 237
              +VS +  +++  FI    +    +  W +  S  S     ++  R+  +E I  S N
Sbjct: 169 LGKDVSELTGEEIGSFITDTVEPMFSESSWTDASSGWSSASSTDMTSRVSASETITSSTN 228

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N  G+R +   A + +    ++L+  A++ +  K +    Q  SGI+ Q++ LG+S++ 
Sbjct: 229 ANSEGMRYLALAATVVSALFGQDLSSDAQSTVASKAIGYAAQATSGIVTQQSELGLSQER 288

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +    L  +++++   +    GV+ + A   ++ L  ++E +Y + +KLQ LS++NYL
Sbjct: 289 LEKANDALDAQSSLLQGNLVDLQGVDTYEASTLVNQLQTQLETAYTLVSKLQNLSLVNYL 348


>gi|296445194|ref|ZP_06887154.1| flagellar hook-associated 3 family protein [Methylosinus
           trichosporium OB3b]
 gi|296257368|gb|EFH04435.1| flagellar hook-associated 3 family protein [Methylosinus
           trichosporium OB3b]
          Length = 349

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/357 (21%), Positives = 147/357 (41%), Gaps = 9/357 (2%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
             +  ST+S+   +     +      K   E+ TG+ +D GL LG      +        
Sbjct: 1   MVSITSTASLANALRKTIVDTQNQMSKAQVEVSTGRVADLGLALGGGTAQDVSLGVRSAD 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           ++   +SN+++  RLST+   L ++    Q+ +  LV    G   + +            
Sbjct: 61  LSSITNSNAVIAARLSTTDTSLETIATTAQNFLETLVGAQSGAGSDAQ--AIQDNAVSGL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYF-TKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +S +   + +  G YLF G+++S  P+  YF    S +K + DQ             +  
Sbjct: 119 KSLIGALDTSIGGVYLFGGVSTSTSPIADYFSDPPSASKDALDQAFVSAFG------VTQ 172

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               V S+   QM  +++           W  +WS+ASD     RI  ++  D S + N 
Sbjct: 173 SDDAVGSITQSQMQSYLEGGFSDLFSASGWTTSWSSASDRATSNRISLSQIADTSVSAND 232

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
              R I     +  +     L   A N + +   +T+   +  +   RA +G+ + N++ 
Sbjct: 233 SAFRGIAAAYAMVADSGVTKLGSDAYNEVLRTATTTLSSAIGDLTRLRASVGVMQTNVSN 292

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               L  + N + + I     V+ + A  +L+ L  ++E SY +T K+Q+L++  Y+
Sbjct: 293 ANDSLTAQQNALASQIGALENVDPYEASTRLNNLTTQLETSYTLTGKIQQLTLTKYI 349


>gi|12330682|gb|AAG52879.1| FlgL [Brucella abortus]
          Length = 309

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 126/288 (43%), Gaps = 10/288 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q     + +  Q+ +G L                A   R  
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA---GANNSGETAKTVAKSARSM 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q           A 
Sbjct: 118 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFG------FAM 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V++++  +M  F++    +  +D  WA NWS+ASD  IK RI  TE  D S + N 
Sbjct: 171 DDPQVANISGDEMKAFLEGDFAEQFNDANWAANWSDASDTRIKSRISPTETADTSISANA 230

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
            G R  +  AV+ TEF    L   A + LT + L    Q ++    ++
Sbjct: 231 DGFRKTVMSAVMVTEFADIGLNASAFDALTTQALQITTQAVTETTSEQ 278


>gi|90418363|ref|ZP_01226275.1| putative flagellar hook-associated protein [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338035|gb|EAS51686.1| putative flagellar hook-associated protein [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 352

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/350 (22%), Positives = 148/350 (42%), Gaps = 17/350 (4%)

Query: 14  RMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVT 73
                   +  +     +E+ TG+ +D GL LG+R    +    E+        +N+L+ 
Sbjct: 14  APRSAVFRIQDELRNAQKEVTTGRFADVGLTLGSRTNQTVSLRVERESAIRIQEANTLIG 73

Query: 74  KRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDE 133
           +R  T Q  L S+ K  ++++  L+        +     +    +   + F+   N    
Sbjct: 74  QRFDTMQTALESIAKTGENLLASLI---SNGPADAGISASVQQAKAGLQQFMGAINAASG 130

Query: 134 GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQM 193
            ++LFSG  + +  L        +A    D          +K  +       +  +A  +
Sbjct: 131 SRFLFSGAATDQPALAFTKVGGGVASSYEDN-------STAKKAVNDALTAAAPASAADL 183

Query: 194 TDFIKQLEDKFS------DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM 247
             F+    +         D   W + WS A    +  RI D+E +DVS   +    R+I+
Sbjct: 184 EAFLDGAFNDLFKVPQPSDGTGW-DMWSKADSSPVVNRISDSETLDVSYPASDEAFRNIV 242

Query: 248 FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN 307
              V+ ++  +K + +  R +LT + + T+  GLS + E RA +G  +  +      L  
Sbjct: 243 KAYVMISDLGAKTMDESQRQLLTSRAVETLSLGLSQLTEIRAEIGGKQSRLEITNETLGT 302

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + N++   IS    V+ + A  +++TL N +E SY +T ++ +LSI+NYL
Sbjct: 303 RKNVLTMSISSFEDVDAYEASTRVTTLTNLLEASYALTARISRLSIMNYL 352


>gi|222084887|ref|YP_002543416.1| flagellar hook-assosiated protein [Agrobacterium radiobacter K84]
 gi|221722335|gb|ACM25491.1| flagellar hook-assosiated protein [Agrobacterium radiobacter K84]
          Length = 331

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/343 (27%), Positives = 167/343 (48%), Gaps = 12/343 (3%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           M    ++   +      E  TG  +D G+ LG+   S +   ++   I   L SNS+V +
Sbjct: 1   MRQTIRQAQNEMTDASTEATTGVYADIGVSLGSGTASNVNLTRDVTRIDSILSSNSVVNQ 60

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
           R+++SQ  LS M    Q  +  LV L  G +D++   +       +  SFV  AN    G
Sbjct: 61  RMTSSQTALSDMSSQAQKFMDQLVALR-GNSDDSSIQLTQQTATATMSSFVADANTMVNG 119

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           +YLF+G N+  +P+    T  + A           ++         Q + +S +   QM 
Sbjct: 120 EYLFAGTNTDVQPMTDNSTAATTA-----------IQSALSDYATAQGVAISDLTGDQMK 168

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGT 254
           DFI  + +     +   ++WS+ASD N+  RI ++E I+ S N N  G+R +     +  
Sbjct: 169 DFITNVAEPLVTSDSSWSDWSSASDQNMSSRISNSEVIESSTNANATGMRYLALSTTVAN 228

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
             + + L+  A N +T +  S  +Q + G+  Q + LG+S+  + +    L  +  II+T
Sbjct: 229 ALMGQGLSQDALNAVTDQATSYARQAIDGLNNQASQLGLSQARLTDANTSLNAQKTIINT 288

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            IS   GV+ + A  ++++L  ++E +Y I +K+Q+LS++NYL
Sbjct: 289 NISDLTGVDAYEASTKVNSLQTQLETAYTIVSKIQQLSLVNYL 331


>gi|158422273|ref|YP_001523565.1| flagellar hook-associated protein FlgL [Azorhizobium caulinodans
           ORS 571]
 gi|158329162|dbj|BAF86647.1| putative flagellar hook-associated protein [Azorhizobium
           caulinodans ORS 571]
          Length = 352

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 91/363 (25%), Positives = 157/363 (43%), Gaps = 19/363 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+++ IST S           L     K + E+ TG+ +D GL+LG + +  ++   E N
Sbjct: 1   MQSSYISTMSWTLSAMKSITSLQTQIEKKNTELATGRYADIGLELGVKTSLSVDLRHEYN 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +   L SNSL    ++ SQ  L+++          L   L  +             +  
Sbjct: 61  QVQGLLDSNSLTDSIMTRSQTGLTNILNNASTYQKTL---LSSQASAETVTQMQLEGQQG 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             S ++  N TD  +Y+F GINS + P+  + T   +A ++  Q   GF   +       
Sbjct: 118 LASLLSSLNTTDGTRYVFGGINSGQTPMKDFATNAQVAIQTAFQTAFGFPVSDP------ 171

Query: 181 QHLEVSSMNAQQMTDFIKQLED-------KFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
              + +++ + QM  F+  +            +D  WA  WSNAS  N+  +I  TE + 
Sbjct: 172 ---QAANITSGQMQTFLNNVFSEDNTNTSALFNDTNWAAQWSNASSTNLTRQISQTENVS 228

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
           VS   N   +R +     +       +L   A   +     +T+  G++G+    A +G+
Sbjct: 229 VSTTANDTAMRKLAMAYSMMGYLGVGSLNMSALQTVMDTSRATLSAGMTGVTNTAAAIGV 288

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           S+  +      L    +++ + I+    V+   A  QL TL N++ MSY  TTKL +LSI
Sbjct: 289 SQTRVTTANSELNKTLDVVKSRINSLESVDPAEAKTQLDTLTNQLSMSYSTTTKLLQLSI 348

Query: 354 LNY 356
           +NY
Sbjct: 349 MNY 351


>gi|304392491|ref|ZP_07374431.1| putative flagellar hook-associated protein FlgL [Ahrensia sp.
           R2A130]
 gi|303295121|gb|EFL89481.1| putative flagellar hook-associated protein FlgL [Ahrensia sp.
           R2A130]
          Length = 347

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 149/355 (41%), Gaps = 14/355 (3%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
           T  +ST  +        + L  +  K   E  T + ++  L+LG +    L  E E   +
Sbjct: 7   TPHVSTRILVGGPASDIRRLQAEIEKSQTEAATNRMANPALELGQQNGLRLRLEGEVQVL 66

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
             R+ +  L T RLS +Q+ L+++++  +     L+  + G TD N     A     + +
Sbjct: 67  ESRVQAYDLATVRLSVTQSALTAIKQQGEQFSQSLITAVGGVTDGNFI---AATAEATLQ 123

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
            F +  N +  G +LF+GI+S   P+       S    +F     GF   +  S      
Sbjct: 124 GFRSAMNTSAGGDHLFAGIDSGSAPIGDLSAIRSDIVATFTARF-GFPPGDPAS------ 176

Query: 183 LEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242
               ++    + DF++           W +  S ASD  +K R    + +D+S + N   
Sbjct: 177 ---QNLAPDLVVDFLQNDLQPRLTGTAWTSLVSGASDEAVKLRTGTGDTVDISISANESA 233

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
           +R +M  A++  E  +  L   +   L +     + QGL+     +  +G++   I+   
Sbjct: 234 MRGVMAAALMTAEL-APYLNADSVAALARTSTDILAQGLADTNVLQTRIGLTTGQIDNAT 292

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                +   ++T     + V+   A ++ +  + ++E +Y +T +LQ LS+L +L
Sbjct: 293 AADNARRAGLETVSEDMVRVDPFEAASRFNAQVTQLETAYALTGRLQGLSLLRFL 347


>gi|254698188|ref|ZP_05160016.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260762635|ref|ZP_05874967.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260673056|gb|EEX59877.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 246

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 10/256 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   IST      +  L  +   + VK  +E  TG   D GL LG+R    +   +E +
Sbjct: 1   MKAQSISTYGATSALRALVAKNKAEMVKAQQEATTGTVFDVGLSLGSRTGQTVSLRKEYD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++     N LV +R++ +Q     + +  Q+ +G L                A   R  
Sbjct: 61  RLSVLTDMNKLVQQRMTATQTAAGKIIENTQNFLGDLA---GANNSGETAKTVAKSARSM 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S     N +  G+Y+F+G+N+  KP++ Y    S A+ +  Q  Q           A 
Sbjct: 118 LDSVTGLLNTSFNGEYIFAGVNTDVKPISDY-ADGSTAQNAVRQAFQDHFG------FAM 170

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V++++  +M  F++    +  +D  WA NWS+ASD  IK RI  TE  D S + N 
Sbjct: 171 DDPQVANISGDEMKAFLEGDFAEQFNDANWAANWSDASDTRIKSRISPTETADTSISANA 230

Query: 241 RGIRDIMFVAVIGTEF 256
            G R  +  AV+ TEF
Sbjct: 231 DGFRKTVMSAVMVTEF 246


>gi|89068726|ref|ZP_01156112.1| flagellar hook-associated protein [Oceanicola granulosus HTCC2516]
 gi|89045689|gb|EAR51751.1| flagellar hook-associated protein [Oceanicola granulosus HTCC2516]
          Length = 353

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 136/367 (37%), Gaps = 36/367 (9%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++       +      +      + +E+ TG+ +D     GA  T +L+          +
Sbjct: 8   VANYGQSSSLRQDVATVRDRLDNVGQEVATGKRTDIYRAAGADATELLQLHAAFERQQAQ 67

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVIL-LEGKTDNNKFPINAGMLRDSYESF 124
           + ++  +  RL    + + S++ + + +    V L + G  D       +     + E  
Sbjct: 68  IDADKALATRLDAMSSVMDSIRTLGEQVRTAAVNLTVTGSGDYGALKAAS---HTALEHM 124

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEE------------ 172
           +   N    G  LF+G+ ++   L G+   D+   +    ++ G +              
Sbjct: 125 IGQLNTRHAGAALFAGVETASAALTGWTDADTGTGQVPRDLVAGIIGGGITDAADAAAKA 184

Query: 173 -NSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEG 231
            + ++L AG   E +  N     D       + S                   RI     
Sbjct: 185 ADLEALFAGPDFEATFYNGAPQVDGAGNPVPRLS------------------ARIDAGVT 226

Query: 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDG-ARNVLTKKMLSTVQQGLSGIIEQRAV 290
           +D     N   +RD+     +   F    + DG AR          +  G+SG IE  A 
Sbjct: 227 LDFGVQANDGPLRDLYRGLAMFAAFDVSAIADGPAREAWIGAATDALSSGISGTIEMEAR 286

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
           LG     ++E    L++++++ +  I+    V+ + A  +L+ L  ++E SY++T +L  
Sbjct: 287 LGSQRNALDETLALLESRSDLYNAQINDLQSVDPYEAATRLADLETQLEASYLVTRRLAD 346

Query: 351 LSILNYL 357
           LS L Y+
Sbjct: 347 LSFLRYM 353


>gi|84502374|ref|ZP_01000510.1| flagellar hook-associated protein [Oceanicola batsensis HTCC2597]
 gi|84389186|gb|EAQ01983.1| flagellar hook-associated protein [Oceanicola batsensis HTCC2597]
          Length = 360

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 150/358 (41%), Gaps = 6/358 (1%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
              +S+          T ++ +  +   EE+ TG+ +D    LG R    +         
Sbjct: 5   VQTVSSLQSLLTRQRTTTDMTRLMMIAEEEVATGRHADPFSALGTRAVEAMNTRAVYERT 64

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
             R+ SN+L+  RL      L +++   QD++  + I     T + +  +   + +D+Y+
Sbjct: 65  EGRIESNTLLQNRLDLMATALGNVRDAAQDVL-TMTISNTDPTSSRQLYLK-DLAQDAYD 122

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEE--NSKSLLAG 180
           S V+F N +  G+ LF G++S    +N +  +D+    S   ++   +       +    
Sbjct: 123 SIVSFMNASYNGKALFGGVDSDRTAMNSWAERDAATGLSASDVMSTIVGGGITDAADANA 182

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
           +  E+ ++      +     E  F +     +   NA +  +   I +   I      N 
Sbjct: 183 KLAEIDAVFNGTPANPAWGYEATFFNGTPLEDGLGNA-NPRLAASIDENLDIGYGVQAND 241

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDG-ARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
           RG RD+M    +        +TD  A      +  + +  G++G++   A  G  +K + 
Sbjct: 242 RGFRDMMRGLAMLAAGDPATITDDGAYEAWVGEAAAALGAGVTGVLNAEARTGSMQKLVE 301

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    L  K  ++  +IS+   V+   A ++L++   +++ SY +T +L +LS +N++
Sbjct: 302 DSNDRLHAKREVLTLHISELESVDPFEAASRLTSTQTQLQASYAVTARLSQLSFVNFM 359


>gi|163744344|ref|ZP_02151704.1| flagellar hook-associated protein [Oceanibulbus indolifex HEL-45]
 gi|161381162|gb|EDQ05571.1| flagellar hook-associated protein [Oceanibulbus indolifex HEL-45]
          Length = 353

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 141/353 (39%), Gaps = 8/353 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+    R    T  L  +   + +E+ TG  ++    LG R    +    +       
Sbjct: 8   ISTALQSLRQREQTSRLAAEISDVSKEVTTGIKANPYDDLGHRSADAIAIRMQITRNDGF 67

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           L SN+L+ +R    +  L +M+ + Q ++                       R + +  +
Sbjct: 68  LTSNALLDRRFLAVETSLGAMRDVGQSVLEQ--AFSSDSAGGLSTTYLQQAARTALDQVL 125

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             A ++D   +L SG  S   PL  +  ++  +  S    +   +     +L      +V
Sbjct: 126 ERAAVSDSSGFLMSGTRSDTNPLQTWDVQNPNSGVSPANAVANVIGGVPATLA-----DV 180

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
            +        F     D  ++ E    N +   +  +  R  +T+ +  +A  N   +RD
Sbjct: 181 QTAIDGLKAAFSDTAADPANNFENTFYNGAPTGNPPLTSRTSETQTLTQTAQANDPAMRD 240

Query: 246 IMFVAVIGTEFLSKNLTDGA-RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           +M    + + F   ++ D A R+    +  S +  GL G+ +     G+    + +    
Sbjct: 241 LMRGLAMLSAFNPSDIPDEAARDAWLSEARSAIGAGLEGLTDLETQTGLKRGQLADSISA 300

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +++   ++  +    GV+Q+ A  +L+ L N++E SY +T +L +LS LNYL
Sbjct: 301 QESRALFLNGEVMNLEGVDQYDAATRLTQLQNQLESSYAVTARLSRLSFLNYL 353


>gi|312115278|ref|YP_004012874.1| flagellar hook-associated protein FlgL [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220407|gb|ADP71775.1| flagellar hook-associated protein FlgL [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 344

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/354 (21%), Positives = 144/354 (40%), Gaps = 13/354 (3%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           + +STS ++        +      K+  E  +G+ SD    LG++       + +   + 
Sbjct: 2   STVSTSVLYSIAPGAVADTQAKIAKVTAETSSGKISDPASALGSQYGLYRTLQAQSTSLT 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             +++NS+V  ++  S   L+++    + +   L+               A   +   ES
Sbjct: 62  NTINANSIVLNKIKASTTSLTAIYSDAETLSNALLSAK----STGDVSALATQAKGMVES 117

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
            +T  N +  G Y+F G N++  PLN Y      A  S      G  + ++ +       
Sbjct: 118 LITSLNTSTGGAYVFGGSNTTVTPLNDYSDAAQAATASAFYAAFGMTQSDTSA------- 170

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             SS+ +  M  F+        DD  W+ NWSNAS      RI + +    S + N    
Sbjct: 171 --SSITSSDMASFLSGDYATLFDDTSWSGNWSNASSTRGTARISEGQTATTSVSANEEAF 228

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           R +     + ++    NL    +  +    L  V   ++GI   +  LG+S+  I     
Sbjct: 229 RQLAEAYTMISDLGLDNLNSTTQQTVIVAALEKVNSAMAGISGMQTTLGVSQSQITSTNA 288

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            L  +  ++D + S+    +   A A+L+ L   ++ SY +T ++  LS++NYL
Sbjct: 289 RLTTEKALVDNWSSELGDSDPTEASAKLAQLETLLDTSYTLTNRIYSLSLVNYL 342


>gi|254473339|ref|ZP_05086736.1| flagellar hook-associated protein 3 (HAP3) FlgL, putative
           [Pseudovibrio sp. JE062]
 gi|211957455|gb|EEA92658.1| flagellar hook-associated protein 3 (HAP3) FlgL, putative
           [Pseudovibrio sp. JE062]
          Length = 276

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 106/279 (37%), Gaps = 3/279 (1%)

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
               L ++ +   D    L+ L       N     + +     +      N    G Y+F
Sbjct: 1   MNTALDNIHESNADFRSDLIALKSNS---NNLKTASNLAYTELDKLTNALNTNVSGVYVF 57

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
            GIN+   P+N + +     +   +Q  Q F   +                 +    F+ 
Sbjct: 58  GGINTGTAPVNDFKSLPGGPEVQIEQAFQTFFGHSIDDPATESIPAKGDPAGKDWETFLD 117

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
               K      W  +WS+A++  +   I++      S + N +   ++     I   F  
Sbjct: 118 SAGFKDIFGADWTTHWSSATNEKMTSTIENGVTTTGSGSANEKAFGELAEGLSIVAVFGK 177

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            NL   A   +T + ++++  G+   I   A  G  + N+      +  K ++++  I+ 
Sbjct: 178 LNLNTEAEKFITDRAVNSLNSGVDKTIVIEAQNGAIKTNVERTNSDIIAKKDVLNMRIND 237

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++++ A  +LS    ++E +Y IT K++ L+I+ YL
Sbjct: 238 LENIDENRAAVELSLAQTQLEATYAITAKIKDLNIMKYL 276


>gi|209963557|ref|YP_002296472.1| flagellar hook-associated protein 3 FlgL, putative [Rhodospirillum
           centenum SW]
 gi|209957023|gb|ACI97659.1| flagellar hook-associated protein 3 FlgL, putative [Rhodospirillum
           centenum SW]
          Length = 355

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 141/357 (39%), Gaps = 2/357 (0%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  + IST ++  +   L + +  D   L  E+ TG+ SD    +G+R   +L+    + 
Sbjct: 1   MSVSSISTMALARQTRNLVRTMQSDMHTLELEIGTGKKSDVAGSVGSRAALLLDLRNARQ 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
             AE   S    + RL+  Q  L  ++     +   L + + G               ++
Sbjct: 61  TTAEYRQSIQTQSSRLTLMQEALDKVRGSATQVR-DLALSVSGSGVGAAAATIDEAALNA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            ++  +  N +  G+YLF+G     +P+              D +          S  A 
Sbjct: 120 IQTLSSMFNSSQSGRYLFAGTRFDTRPMQPPTETAPSGIAPLDAVKSVLSSLGPTSTAAD 179

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               ++  N    + F        +  E ++  +   S   ++ R  +   +  +     
Sbjct: 180 VDAALNGPNGLS-SIFSDTYGGGPAAPENFSKTFFLGSTTQVQGRAGEDLPVTYACTAGD 238

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
             +R ++    +     S++++  A   +  +    + Q    +I+ + ++G+ E+ +  
Sbjct: 239 EPVRTLLKGLYLLAAVPSESVSTEAYQRIADQGWRLITQATDELIDTQGIIGLQEELLKR 298

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                + ++ ++   I++    + +    +L+TL  ++E ++ +T+++ KLS++++L
Sbjct: 299 ADERHEVEDGLLSKQITQMEMADPYETGLRLNTLETQLEATFAMTSRISKLSLIDFL 355


>gi|114765249|ref|ZP_01444381.1| flagellar hook-associated protein [Pelagibaca bermudensis HTCC2601]
 gi|114542384|gb|EAU45412.1| flagellar hook-associated protein [Roseovarius sp. HTCC2601]
          Length = 353

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 129/354 (36%), Gaps = 13/354 (3%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST            E+     K  +E+ +G  SD    LG   +  L           ++
Sbjct: 9   STLYSNLLRRNANAEMQTQLAKAEQELASGVKSDIYKSLGPSASEALNLNASLERDEAQI 68

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            +N+L+  RL T    L SM + +Q  +   +      T+           + S +S ++
Sbjct: 69  AANTLLGGRLDTMSGALGSMGEAIQRTLDLSIA--NAGTNGGTAAGIQTEAQASLDSLLS 126

Query: 127 FANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEE--NSKSLLAGQHLE 184
            AN+   G  LF+G +     +  Y +  +    +   ++ G L    ++ +    +  E
Sbjct: 127 MANVNYGGIPLFAGPSDGTSAIQDYDSARADTGLTPKAVIDGILAGGLDTAADAEARIAE 186

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           + ++      D  +  +  F                 +   I D   +      N    R
Sbjct: 187 LDAIFDNTAADPDQTFDGLFFTGATGTA--------PMSVGIGDGITVTYGVQANDEAFR 238

Query: 245 DIMFVAVIGTEFLSKNLTD-GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            +     +        + D  A           +  GL+G+++ R  L  +   I+E   
Sbjct: 239 QVFQGLSMLAATDVAKIDDPAAYETWISTANDRLSAGLAGLLDSRMKLDTASARIDEANT 298

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++++ N+    +++ + V+ + A   ++ L  +++ SY  T +L +LS LN++
Sbjct: 299 RMEDRANLYKNRVAEMVEVDSYEAATTITALETQLQASYAATARLSQLSFLNFM 352


>gi|288962671|ref|YP_003452965.1| flagellar hook-associated protein 3 [Azospirillum sp. B510]
 gi|288914937|dbj|BAI76421.1| flagellar hook-associated protein 3 [Azospirillum sp. B510]
          Length = 367

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 124/370 (33%), Gaps = 16/370 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    +ST  +   +         D  + +EE+ TG  +D    +GA     +      +
Sbjct: 1   MLYNALSTLGMSRTLQSTMTRQQLDLTRANEEVATGIHADVAATIGAGTGRDIALRNLFD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
              E + +  L+  R+    + ++S+     D++      L     +          R  
Sbjct: 61  RTDEYVKTTDLLDGRMKMMDSAMTSILTSGTDLLAAASTGLG--QQSPTGSSLQIRARGV 118

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +  V   N +    YLF+G    + P+       S  + +  Q+++  ++  +      
Sbjct: 119 LDQVVGLLNASAGNVYLFAGTALDQPPMRNVDGDKSGLR-APMQIVRDAIQSATGGPAMP 177

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSN-------------ASDHNIKYRIK 227
                ++    ++ D     +          + +                +   +  +  
Sbjct: 178 TTAAETAAVVARLDDLFAVRDPATPAPAPLTDTFEGGFYTGTTALQPGGTASPRVSGQPA 237

Query: 228 DTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQ 287
           D+  I      N   +R ++    +     S  +   A     K  +  +  GL  + E 
Sbjct: 238 DSAAIAYGVQANDPMMRQMLEGIYMLAAVDSSKMDVDAYPDYIKTAVDKLSGGLGKLREA 297

Query: 288 RAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTK 347
            A LGI    +       + + +I+   I    GV+ + A  +++ L  +I+ +   T +
Sbjct: 298 TAQLGIQRAQVATLAEQHKTQKSILSLQIDTLEGVDPYEASTRITQLEAQIDATSSATAR 357

Query: 348 LQKLSILNYL 357
           + KL + NYL
Sbjct: 358 IAKLRLTNYL 367


>gi|119385425|ref|YP_916481.1| putative flagellar hook-associated protein [Paracoccus
           denitrificans PD1222]
 gi|119375192|gb|ABL70785.1| putative flagellar hook-associated protein [Paracoccus
           denitrificans PD1222]
          Length = 339

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 129/356 (36%), Gaps = 26/356 (7%)

Query: 5   GISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE 64
            I   S   ++ +    L     +L +EM++G  SD    LG  +  I   E     +  
Sbjct: 6   SIGDLSRSYQLRLGQNGLRTKLDRLTQEMISGVKSDIPKALGGDLAGISHIESRLQLLTT 65

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
              + S    RL+T QA L  +  +V D +GP ++     +  +     A   +  + S 
Sbjct: 66  FQQNASEAQNRLTTMQAALEQVYGVVDD-LGPRLLSEPNISGEHDLRARADSTKQDFRSM 124

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
            +  N +  GQYLF+G  +   PL            SFD ML       +          
Sbjct: 125 FSVLNTSIGGQYLFAGSRTDSAPLG-----------SFDVMLAELTSTVAGVT------- 166

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASD-HNIKYRIKDTEGIDVSANVNMRGI 243
                A  + D I    D  +    +A+      D  + ++ I     ID S   N   +
Sbjct: 167 ----TAADIADRIDAWFDAPAGMGGFADRIYQGDDNGSTRFSISPDRQIDKSLTANSTAL 222

Query: 244 RDIMFVAVIGT--EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
           RD +    I          +       L  +  + + +G +G+I  +A LG  +  + + 
Sbjct: 223 RDTLKGMAIIAYASEAGAAIDTATLRDLFSEAGTRLLKGAAGLISAQADLGRQQAIVTQA 282

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +     +   +    +  IG +       L     KI+  Y IT +L +L++ +YL
Sbjct: 283 QTRNSAETAALSIARTNLIGADPFETVTTLEETEAKIQSLYAITARLSRLNLTDYL 338


>gi|83955133|ref|ZP_00963789.1| flagellar hook-associated protein [Sulfitobacter sp. NAS-14.1]
 gi|83840462|gb|EAP79635.1| flagellar hook-associated protein [Sulfitobacter sp. NAS-14.1]
          Length = 359

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 145/358 (40%), Gaps = 7/358 (1%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
            +  S+           +    +  ++ EE+ TG+ +D    LG R  S+++    + + 
Sbjct: 5   ISSFSSFQFNLFNRQNVQRTTLELQRVSEEVSTGKKADIYTDLGPRAASVMKLHGREANT 64

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
              + SN ++  +L    A + + +  VQ ++     L+    D N   +     R + E
Sbjct: 65  QTFMTSNDVLASKLDAMLASVDAARTQVQSVLES--ALVNATRDGNGAEVLQMQARAALE 122

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAK---KSFDQMLQGFLEENSKSLLA 179
           S V+  N +  G+ LFSG+ S++  L  +    +      +S  + + G    +  S  A
Sbjct: 123 SLVSTMNTSYNGENLFSGLESNKTSLTRWPETSADTGRSPQSVVEEIFGAGPTDPASAQA 182

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                 +  N+Q       +             + S A    I   +   + +      N
Sbjct: 183 IADQLEAVFNSQDADA--SRNFQGTFYQGSPERDASGAETKQISAWVNTGQEVVYGVRAN 240

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
            +  RD      +        + + A +    +++ ++     G+++  A +G +++ + 
Sbjct: 241 DQSFRDAYKGLAMLAVTDVSQMDEAAYSTWMSEVVDSLSASQEGMLDISARIGFNQEIVE 300

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +  L + + +  T IS    V+ + A  ++++L  +++ SY ++++L  LSILNYL
Sbjct: 301 KTQTQLTDLSLVQRTQISNYESVDPYEAITRMNSLETQLQASYQVSSRLSSLSILNYL 358


>gi|83944167|ref|ZP_00956623.1| flagellar hook-associated protein [Sulfitobacter sp. EE-36]
 gi|83845034|gb|EAP82915.1| flagellar hook-associated protein [Sulfitobacter sp. EE-36]
          Length = 359

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 142/356 (39%), Gaps = 3/356 (0%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
            +  S+           +    +  ++ EE+ TG+ +D    LG R  S+++    + + 
Sbjct: 5   ISSFSSFQFNLFNRQNVQRTTLELQRVSEEVSTGKKADIYADLGPRAASVMKLHGREANT 64

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
              + SN ++  +L    A + + +  VQ ++     L+    + N   +     R + E
Sbjct: 65  QTFMTSNDVLASKLDAMLASVDAARTQVQSVLES--ALVNATRNGNGAEVLQMQARAALE 122

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           S V+  N +  G+ LFSG+ S++  L  +    +   +S   +++           + Q 
Sbjct: 123 SLVSTMNTSYNGENLFSGLESNKTSLTRWPETSADTGRSPQSVVEEIFGTGPTDPASAQA 182

Query: 183 LEVSSMNAQQMTDF-IKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
           +           D    +             + S A    I   +   + +      N +
Sbjct: 183 IADQLETVFNSQDADASRNFQGTFYQGSPERDASGAETKQISAWVNTGQEVVYGVRANDQ 242

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
             RD      +        + + A +    +++ ++     G+++  A +G +++ + + 
Sbjct: 243 SFRDAYKGLAMLAVTDVSQMDEAAYSTWMSEVVDSLSASQEGMLDISARIGFNQQIVEKT 302

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  L + + +  T IS    V+ + A  ++++L  +++ SY ++++L  LSILNYL
Sbjct: 303 QTQLTDLSLVQRTQISNYESVDPYEAITRMNSLETQLQASYQVSSRLSSLSILNYL 358


>gi|296531744|ref|ZP_06894569.1| possible flagellar hook-associated protein [Roseomonas cervicalis
           ATCC 49957]
 gi|296267927|gb|EFH13729.1| possible flagellar hook-associated protein [Roseomonas cervicalis
           ATCC 49957]
          Length = 363

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 135/370 (36%), Gaps = 21/370 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M T  +S S +          L  +   L  EM +G+ +D    LG   + + +   +  
Sbjct: 2   MMTDRVSPSGVALGRQRDIARLQSELAVLTAEMSSGRKADPARALGVGASLLYKLYGDVQ 61

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                 +S SL  +RL  +Q  L+S+  ++  M     IL       N + I A   R+ 
Sbjct: 62  QGEAIRNSTSLAGQRLKAAQEALTSVGGLMDQMSPE--ILKTDALKGNGYTIIASNAREV 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYF-----------TKDSLAKKSFDQMLQGF 169
             S     N   +GQ LF G +SS+ PL                  + A  + D      
Sbjct: 120 LGSMTDLLNTHWDGQNLFGGTDSSQPPLAPSAGLLAWAQGRLGAAVTAAGGALDAAQATA 179

Query: 170 LEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDT 229
           L     ++ A    + +   +         L  + +     A +    SD     RI   
Sbjct: 180 LIGQFDTMFANVQRDAAGATS------FYGLVYRSTSRTDMAGSSDPESDAPSLIRIGAG 233

Query: 230 EGIDVSANVNMRGIRDIMFVAVIGTEFL--SKNLTDGARNVLTKKMLSTVQQGLSGIIEQ 287
           E +  +   +    +D      + +     +  L++ AR  L  +    +  G + +   
Sbjct: 234 ETLSWNVRADNAAFKDAFKSLALLSLLGAPASQLSEEARTTLLDEAGRLMGSGRAKLTVL 293

Query: 288 RAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTK 347
             VLG  +  + +     +         I+   G + +T   +++TL  ++E +Y IT +
Sbjct: 294 AGVLGGKQDRLEKVGEIQERAVAAATAQINDLEGADYYTVSDRINTLRIQLEATYSITAR 353

Query: 348 LQKLSILNYL 357
           L +LS++NYL
Sbjct: 354 LSELSLVNYL 363


>gi|294675566|ref|YP_003576181.1| flagellar hook-associated protein FlgL [Rhodobacter capsulatus SB
           1003]
 gi|294474386|gb|ADE83774.1| flagellar hook-associated protein FlgL [Rhodobacter capsulatus SB
           1003]
          Length = 338

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 131/360 (36%), Gaps = 26/360 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK   +   S    M     +L     +L EE+VTG S D G ++G   T++   ++   
Sbjct: 1   MKYISVGDMSQTYLMRRHNVQLKTTMSRLSEEVVTGISQDLGTKVGGDFTALAAIDRSMV 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                    +       T Q  L ++Q   Q +   L+      +  N     A      
Sbjct: 61  RGEAYKQVAAETDLLAGTQQDALETIQGHAQAIGATLISASFASS-YNMIESGAQNAEQR 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +E+ V   N+   G+Y FSG  +  KP+    T  S  +     M               
Sbjct: 120 FEAVVDALNVNVAGRYAFSGTTTDTKPVASADTIISSLEAVVSGMTV------------- 166

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVN 239
                    A  +   +    D  +    + +     S +++   R+ +T+   ++    
Sbjct: 167 ---------AADIIAAVDDWFDAAAGGGGFLDQGYLGSANSLSPVRLSETDSAQLTITAG 217

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTD--GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
              IR+++    +GT      + D    R +L +     +      +   RA LG  E  
Sbjct: 218 DSSIRNMLKGFALGTLVARDLVPDNIETRALLIRTAGDRITSAEGEMTTLRAGLGTVEAI 277

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           I++ +     +   ++    + IGV+++     L    +++E  Y +T++L +LS+ +YL
Sbjct: 278 ISDAQTRNSAQVTALEIARKELIGVDEYETATALEATQSQLETLYTLTSRLTQLSLTDYL 337


>gi|254464892|ref|ZP_05078303.1| flagellar hook-associated protein FlgL family protein
           [Rhodobacterales bacterium Y4I]
 gi|206685800|gb|EDZ46282.1| flagellar hook-associated protein FlgL family protein
           [Rhodobacterales bacterium Y4I]
          Length = 335

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 136/346 (39%), Gaps = 29/346 (8%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           +     EL ++   L EE  TG+SS+   +LG   T + + E   N I   + +NS V  
Sbjct: 15  LRSRNTELKENVTTLSEEFATGKSSNLSERLGGDFTYLADLESSLNRIGSYMVANSEVRL 74

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
             +T+Q  L  +   V+ M   ++ L       N     +   +    S +   N +  G
Sbjct: 75  FATTTQGSLDKVHSQVEAMRNDILRLSPALDTENAQQFGSQ-AKQRLASAINLMNTSVGG 133

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           + +F+G  +  KPLN                       N+ +L+     EVS +      
Sbjct: 134 RTIFAGTATDTKPLN-----------------------NTSTLMTAVLAEVSGLTTSN-- 168

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVNMRGIRDIMFVAVI- 252
           D I++++D F D   +       S  +++   + + E + +    +   ++  +   VI 
Sbjct: 169 DIIQEVKDWFDDPAGFDAVMYRGSTTSLQPVTVGEGEQVTLGIRADDENLKHALQSYVIT 228

Query: 253 -GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
              +  S  L++  +  L  K  S + +    +I+ +A +G  E  +       +     
Sbjct: 229 ALADEPSLGLSEDVQIDLVIKASSELTESADRLIDLQADVGFIEGQLEAVNTRNEASKTS 288

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    +K +  + +  + +L     ++E  Y IT +  +LS+L Y+
Sbjct: 289 LSIVKNKLVSADPYETYTRLQEAQTQLEGLYTITARSSQLSLLKYI 334


>gi|99082781|ref|YP_614935.1| flagellar hook-associated protein FlgL family protein [Ruegeria sp.
           TM1040]
 gi|99039061|gb|ABF65673.1| flagellar hook-associated protein [Ruegeria sp. TM1040]
          Length = 335

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 143/361 (39%), Gaps = 30/361 (8%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M        + +  +   + ELN     L +EM TG +S+   +LG  +  +++ E+  +
Sbjct: 1   MHVQSFGDMAQYLFLRRRSVELNSTLDTLTQEMSTGIASNLPERLGGDLGFVVDLERSIS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +     +        ST+Q++L  + +    +   ++ L     D     + A    + 
Sbjct: 61  KMDSYKVAAQEAGLFASTAQSYLERINESALKLGSDILALSSTSNDTTSQEMAAQS-ENF 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
               ++  N    G+ LF+G ++S  PL                       E+  +++  
Sbjct: 120 LTETISNLNGKFSGRSLFAGTDTSVTPL-----------------------ESPNTMMTA 156

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVN 239
              EV ++    + D  + +ED F+D   +     N S  ++   RI   E ++ +   +
Sbjct: 157 LVAEVGALT--DVDDIFQAVEDWFNDPAGFDAIMYNGSTSSMSAVRIGANEEVNFALRAD 214

Query: 240 MRGIRDIMFVAVIG---TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEK 296
              ++  M    +G   +E    +L+    + L K+  + +    + + + ++ LG  E 
Sbjct: 215 DERLKQAMQSFALGALASEDYLSHLSTVEASALVKRAGTELMNAQAELTDVQSDLGFVEA 274

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
            I E +V        + T ++  I  +     +++  +  ++E  Y IT +  +L++LNY
Sbjct: 275 RIEETQVRNTAALTTMGTTLNDLILADPAETASRVEEVQFQLEALYSITVRSSQLNLLNY 334

Query: 357 L 357
           +
Sbjct: 335 M 335


>gi|218507948|ref|ZP_03505826.1| flagellar hook-associated protein FlgL [Rhizobium etli Brasil 5]
          Length = 127

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 72/127 (56%)

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
            I+ S N +  G+R     +V+ +  L +NL+  A   ++K+ +S   +  SG++ Q + 
Sbjct: 1   MIESSTNAHSEGMRYFALASVMTSALLGQNLSTDAMTTVSKQAISYTAKATSGLVTQASQ 60

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
           LG+S++ + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I +K+Q+
Sbjct: 61  LGLSQERVKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIVSKIQQ 120

Query: 351 LSILNYL 357
           LS++NYL
Sbjct: 121 LSLVNYL 127


>gi|56695117|ref|YP_165464.1| flagellar hook-associated protein FlgL family protein [Ruegeria
           pomeroyi DSS-3]
 gi|56676854|gb|AAV93520.1| flagellar hook-associated protein FlgL family protein [Ruegeria
           pomeroyi DSS-3]
          Length = 335

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 136/360 (37%), Gaps = 29/360 (8%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    +   +    +      +  +   L  E+ TG+ +D   +L    + + + ++   
Sbjct: 1   MAMNSLGDLAQNLMLRSYGARIRTEINTLTRELSTGKVADVTKRLRGDFSHLADMDRSLR 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++    +N+      S SQ  L  +++ V D+   L+ +       +         + +
Sbjct: 61  RLSAFATANAETRLLASASQTSLGIVEQTVTDLSDSLLSVSLSNQAVSHAQAGVK-AQGA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            E+ ++  N +  G+ LF+G+ + +  L            S D ++ G      +S L G
Sbjct: 120 LETMISALNTSVGGRSLFAGVATDQTAL-----------ASADTLMAGL-----RSALTG 163

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVN 239
                  M A Q         D F D   +A      SD ++   ++ +   + ++   +
Sbjct: 164 LSTPADIMQAAQ---------DWFDDPAGFAATVYTGSDQSLGSTQVSEDTKVSLNRRAD 214

Query: 240 MRGIRDIMFVAVIGT--EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
               RD M +A +    E  +  L+   +  L +++   +     G++  +A +G  E  
Sbjct: 215 DPAFRDAMRLASVAALAEDPALGLSSTTKTALFEQIGVGLLGARDGVVTLQAEIGDVEGR 274

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           I +         + ++    + +  + +    +L  +  ++E  Y  T +  +LS++N+L
Sbjct: 275 IEKAATRNGAAKSGLELARGELLSADPYETAIRLEAVQFQLESLYTTTVRNSRLSLVNFL 334


>gi|163794164|ref|ZP_02188137.1| flagellar hook-associated protein [alpha proteobacterium BAL199]
 gi|159180778|gb|EDP65297.1| flagellar hook-associated protein [alpha proteobacterium BAL199]
          Length = 339

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 127/353 (35%), Gaps = 17/353 (4%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQL-GARVTSILEWEQEKNHIAE 64
           IST +   R++     + +      +++ TG+ S       G  V  ++  ++++  +  
Sbjct: 3   ISTVTQNLRIDNSITSIQRKIADAQQQISTGKKSQVYSGFSGQDVRLLVSLKEQRTSVQS 62

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
            + + +    + +T  A L +   I QD+   +   +EG  DN+   + A     + +  
Sbjct: 63  YVDTINNTKVKTTTIDASLVTFTDITQDLRKKMYEQVEGLFDNSSLAL-ATYANAAIDQL 121

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
               N T  GQ+LF+G ++  +PL    +  +        +                  +
Sbjct: 122 TNLLNQTSGGQFLFNGADTDTQPL---LSATASKAAYAAHVFGALGPGQPALSAGAGATD 178

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V           I  +ED FS D  W NN +  +  +++ RI     +      N     
Sbjct: 179 V-----------IAFVEDFFSTDANW-NNVTAPAPGSLQARIDKGVDVSFGELGNDDAFE 226

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           ++  V         +   D     L    L  V+     I +     G+    +      
Sbjct: 227 EVFEVLYAFANANFQAGDDTEYQALVTWGLGKVEAAFDLINDMVGQNGVIGAQLETNLEA 286

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    +++T +     V+ + A +   TL  ++E S+  T  L+ LS+  Y+
Sbjct: 287 HREGLTLLETQVLDIEDVDAYEAVSLFQTLQAQLESSFQTTALLRNLSLTKYI 339


>gi|260431758|ref|ZP_05785729.1| flagellar hook-associated protein FlgL family protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415586|gb|EEX08845.1| flagellar hook-associated protein FlgL family protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 335

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 123/360 (34%), Gaps = 29/360 (8%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    I   +    +   + E+      L  EM TG+ +D   ++G   + +L+ +++  
Sbjct: 1   MTMNAIGDLARGLTLRTRSTEIKTQIETLSHEMSTGKVADVSSRVGGDYSHLLDLDRKIA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +     + S         Q  L++    + ++ G L+               A   R+ 
Sbjct: 61  QLDAFSIATSEARLFSDAMQQSLTTFSDSLAEISGSLLAF-GTSNQAVTHAQAADQARNE 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S ++  N    G+ LF+G  +   PL            S + +L     + +      
Sbjct: 120 LDSMISALNTRAGGRSLFAGTATDAAPLE-----------SAETLLSALRTQLTGLTTLT 168

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVN 239
                +              E  F+D   +       S+  +   ++ +TE +++    N
Sbjct: 169 DIRRAA--------------ETWFNDPAGFEAVMYRGSNTELAPMQVSETERVELPFTAN 214

Query: 240 MRGIRDIMFVAVIGTEFLSKNL--TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
              +RD +    +       +L      +  L  ++   +          RA +G  E  
Sbjct: 215 DPALRDALRDVAVAALATDPSLGWPPTLQTALFTELAVDLLNAQDKTTTIRAQVGAVEAR 274

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           I +            +   ++ +  + +   A+L T+  ++E  Y +T +   LS++N+L
Sbjct: 275 IEQAATRNSAAKTSFEYARNEIVAADPYETAAKLQTVQFQLESLYSVTVRNSNLSLVNFL 334


>gi|259417367|ref|ZP_05741286.1| flagellar hook-associated protein FlgL family protein [Silicibacter
           sp. TrichCH4B]
 gi|259346273|gb|EEW58087.1| flagellar hook-associated protein FlgL family protein [Silicibacter
           sp. TrichCH4B]
          Length = 335

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 143/361 (39%), Gaps = 30/361 (8%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M        + +  +   + ELNK    L +EM TG +S+   +LG  +  +++ E+  +
Sbjct: 1   MNVQSFGDMAQYLFLRRRSVELNKTLDTLTKEMSTGIASNLPERLGGDLGFVVDLERSIS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +     +        ST+Q++L  +     ++   ++ L     D     +      + 
Sbjct: 61  KMDSYKVAAQEAGLFASTAQSYLERINDNALNLGSDILALSSTSNDTTTQEMATQSA-NF 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
               +   N    G+ LF+G ++S  PL                       E++ +++  
Sbjct: 120 LTETIANLNGKLSGRSLFAGTDTSSTPL-----------------------ESADTMMTA 156

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVN 239
              EV ++    + D ++ +E+ F+D   +     N S +N+   RI   E ++ +   +
Sbjct: 157 LIAEVGALT--DVDDIVQAVENWFNDPAGFDAIMYNGSTNNMSAVRIGANEEVNFALRAD 214

Query: 240 MRGIRDIMFVAVIG---TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEK 296
              ++  M    +G   +     +L+    + L K+  + +    S + + ++ LG  + 
Sbjct: 215 DDRLKQAMQSFALGALASSDSLSHLSTVESSALIKRAGTELMNAQSELTDVQSDLGFIQA 274

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
            I E +         + T ++  I  +     +++  +  ++E  Y IT +  +L++LNY
Sbjct: 275 RIEETQTRNTAALTSMGTTLNDLILADPAETASRVEEVQFQLEALYSITVRSSQLNLLNY 334

Query: 357 L 357
           +
Sbjct: 335 M 335


>gi|126730123|ref|ZP_01745935.1| flagellar hook-associated protein FlgL family protein [Sagittula
           stellata E-37]
 gi|126709503|gb|EBA08557.1| flagellar hook-associated protein FlgL family protein [Sagittula
           stellata E-37]
          Length = 332

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 114/345 (33%), Gaps = 27/345 (7%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           +      L ++  KL  E+ TG + D G  L   +T +   ++    +     + +  T 
Sbjct: 13  LRTNQVRLREEMDKLAVEVSTGFAKDPGQHLNGDLTGLQAIDRSLARLEAYRINTTEATF 72

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
             S+ Q  L  +Q   + +   L+               +    ++    +   N +  G
Sbjct: 73  LTSSMQTTLDEIQTRSEIVSQTLISAELTPNGP-LLKTMSEDAENALGQILNGLNRSVAG 131

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           ++LFSG  +  + + G     + A+ S                         +     + 
Sbjct: 132 RFLFSGTATDRRAVQGIEDLLTDARASL----------------------AGATTMTDVE 169

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIG- 253
             +          E      SN     +  R+ +TE  +V         R+++   ++  
Sbjct: 170 TALDTFFGAGGTYETVTYEGSNTGISPL--RLSETETANVDIRATDPVFREVLKPLIMAT 227

Query: 254 -TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
                S   +   +  +       +      ++E RA LG  E  + E       +    
Sbjct: 228 LATDASLGFSQDLQVEMLAASGRNLLGAQQNVVELRAGLGALEARVEETNTRNAAERTAT 287

Query: 313 DTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                  +GV+Q+   ++  ++  ++E  Y IT + Q+LS+  +L
Sbjct: 288 SMARLDLVGVDQYETASRYESIRAQLESLYAITVRSQRLSLAEFL 332


>gi|254476197|ref|ZP_05089583.1| flagellar hook-associated protein FlgL family protein [Ruegeria sp.
           R11]
 gi|214030440|gb|EEB71275.1| flagellar hook-associated protein FlgL family protein [Ruegeria sp.
           R11]
          Length = 335

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 129/347 (37%), Gaps = 31/347 (8%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           +   + +L  +   L +E+ TG++S    +LG  +T + + E+  + +     +N+  + 
Sbjct: 15  LRNRSVDLKNNISTLTQELSTGKTSQLTQKLGGDLTYLSDVERSLSRLKSFQVANTEASL 74

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
             S++Q +++ +      +   +  +     D+    I+    R      +   N    G
Sbjct: 75  FASSAQENITLLHDNAAKLTSDIFAVTTSPNDDTSRQISNQ-ARGYLTEAIRGLNGEIAG 133

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           + LF G ++  KPL  + T                       L+     EV+ +     T
Sbjct: 134 RSLFGGKDTETKPLESFDT-----------------------LMTNLVTEVAGLTTA--T 168

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVNMRGIRDIMFVAVIG 253
           D ++ +ED F+D   +     N S   +   ++   E + VS        +  +    I 
Sbjct: 169 DIVQAVEDWFNDPAGFDAVMYNGSPDRMDPVKVGPNEEVTVSLLATDPAFKQTLMSLSIS 228

Query: 254 TEFLSKNLTDGA---RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
           +      LT        +L    +  +++    +++ ++ LG  E  I +          
Sbjct: 229 SLVNEPALTLDTNLKFELLRSTGIE-LRESTDQLVQMQSDLGFIEGRIEQTSARNAAAET 287

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    ++ +  + +    +L     ++E  + +T +  +LS++ +L
Sbjct: 288 SLSLVFNELVQADPYETATRLEEAQFQLESLFTVTARTSQLSLMRFL 334


>gi|149203102|ref|ZP_01880073.1| flagellar hook-associated protein FlgL family protein [Roseovarius
           sp. TM1035]
 gi|149143648|gb|EDM31684.1| flagellar hook-associated protein FlgL family protein [Roseovarius
           sp. TM1035]
          Length = 338

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 125/359 (34%), Gaps = 26/359 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    I   +    +     +L +   +L  E+ +G+++D G  L   +  + + E E  
Sbjct: 3   MNFQSIGDLAQSFALRRQGVDLRQQLDRLGLELSSGRAADLGRHLSGNLLPLADIEHELV 62

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A    +           QA L+ +Q +  D +    I+L       +    A     +
Sbjct: 63  LLAGHRTAAREAATDTEVMQAALARVQGVTTD-LATQAIILGTAGTTRQVSDLAATATQA 121

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             S +   N    G+ LFSG  +   PL    T  S  + +                   
Sbjct: 122 LGSLIGSLNTEVAGRALFSGAQTDTSPLAATETVLSEVRDAL------------------ 163

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               + +  A ++   +    D  +   + A+ +         YR+   E + +    + 
Sbjct: 164 ----IGATTAAEVKSRLDVFFDSPTGG-FLASIYQGGDSEVAPYRLGSGESVALDIRADH 218

Query: 241 RGIRDIMF--VAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
            G+R  +     +  ++     L  G R  L       +      + E RA LG +E  I
Sbjct: 219 AGLRAALKQVALIAVSDDAGLALALGDRISLASGAGVALLAHQDVLTEMRASLGQAENRI 278

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  V +  +    +    + + V+      +L  +  ++E  Y +T +  +LS+LN+L
Sbjct: 279 AQSAVRIAAEITSFEIARGELVSVDAFETAVELEQVQFQLESLYTVTARASRLSLLNFL 337


>gi|218678107|ref|ZP_03526004.1| flagellar hook-associated protein FlgL [Rhizobium etli CIAT 894]
          Length = 211

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 15/223 (6%)

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
             +       SN++V  R+  SQ  LSS++     +V  +  L +   D     +     
Sbjct: 1   AIDQATSFQSSNAVVELRMDASQTALSSLKDAGDSLVTNMTAL-QASQDTTSIAVTLQTA 59

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
             +    ++ AN +  G++LF+G N   +PL    +  S A  +                
Sbjct: 60  GATISQLISTANTSVNGEFLFAGTNLDSQPLTDQSSTTSDAIVTA-----------LGDY 108

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDV 234
             G   +V+ +  +++  FI    +    +  W +    WS AS  ++  RI  +E I  
Sbjct: 109 ATGLGKDVNELTGEEIGTFITDTVEPMFSESAWTDASSGWSTASSTDMTSRISSSETITS 168

Query: 235 SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTV 277
           S N N  G+R +   +V+ +   S++L+  A++ +  K +   
Sbjct: 169 STNANSEGMRYLALASVVVSALFSQDLSADAQSTVASKAIGYA 211


>gi|159045917|ref|YP_001534711.1| flagellar hook-associated protein FlgL [Dinoroseobacter shibae DFL
           12]
 gi|157913677|gb|ABV95110.1| flagellar hook-associated protein FlgL [Dinoroseobacter shibae DFL
           12]
          Length = 336

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 120/360 (33%), Gaps = 28/360 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M +T I   +      +    L  +   L  E+ TG+  D   Q+    +++   E E  
Sbjct: 1   MTSTSIGDLAQSMATRMQMTRLKSNLNTLTTELSTGRKEDVAKQMRGEFSAVAALEGEMR 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++    +    +  L  +Q  L+++   V D  GP  +L    +D+             
Sbjct: 61  ALSSYDVAVREGSLLLDAAQVALTNIYDQVVDA-GPDFLLTSEVSDSAMLKAAGQDAEQK 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             + ++  N++  G+ +F G+ +   PL         A+   D++    +          
Sbjct: 120 LATVISSLNLSVAGRAIFGGVATDNPPLL-------SAEALLDELSTVVMGAA------- 165

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHN-IKYRIKDTEGIDVSANVN 239
                     Q     I    +       +       S    +   +   E +  S    
Sbjct: 166 --------TPQDTATLIDSWFND--AGGGFETVAYQGSPTAGLTIPVGPGETVSYSITAG 215

Query: 240 MRGIRDIMFVAVIGT--EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            + +RD++            S +    A+  + +    ++    +     +A +G  +  
Sbjct: 216 DQAVRDVLASFATAALVARGSFDGDPTAQAEMLEIAGQSMLNAEASFSVLQAEVGTQQSF 275

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + + R  +    N     +++    + +    QL  +  ++E  Y +T++L  LS+  YL
Sbjct: 276 LEDARERIDASLNAHQMALNELYSADPYEVATQLEAISLQLETLYAVTSRLSGLSMTEYL 335


>gi|254488064|ref|ZP_05101269.1| flagellar hook-associated protein [Roseobacter sp. GAI101]
 gi|214044933|gb|EEB85571.1| flagellar hook-associated protein [Roseobacter sp. GAI101]
          Length = 334

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 119/360 (33%), Gaps = 29/360 (8%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  T +   +    +      L ++  +L +E+ TGQ +D    L    + I E E+   
Sbjct: 1   MSPTSLGDLAQSFMLRHRNTALKQEMTRLTQELSTGQVADIRQALAGNYSYITELERNME 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++    + +        +Q  L   +++ + +   L++     T   +    A   R +
Sbjct: 61  VLSAYQVATTEAQIFAEVTQTALGRYEEVGEKLANSLIVS-GTSTVGAQANDTAEEARVT 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
               ++  N    G+ +F G  +         T  S  + +                   
Sbjct: 120 VSVLISTLNTKSAGRSIFGGTATDRPATASAETLLSELRAAI------------------ 161

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVN 239
                 ++    M       E  F D   +       S   +   ++ + E +       
Sbjct: 162 ----AGAVTPSDM---FAAAEAWFDDPAGFDTVIYQGSADALAPVQLTNRETVSFDTRAT 214

Query: 240 MRGIRDIMFVAVIGT--EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
              ++D++  A +    E  S   T   +  +     +++      II  +A  G  E  
Sbjct: 215 DPRLKDMLRFASLAALAEDPSLGFTGSQKGEVFVDAGTSLLGARDAIISLQARTGFVEAQ 274

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           I         +    +   S  + V+   A  +L  +  +++  Y +T ++ +LS++N+L
Sbjct: 275 IEGISTRNAAEITSTEFEKSALLNVDPFEAATKLEDVQFQLQSLYSVTVRMSQLSLVNFL 334


>gi|85706144|ref|ZP_01037239.1| flagellar hook-associated protein FlgL family protein [Roseovarius
           sp. 217]
 gi|85669308|gb|EAQ24174.1| flagellar hook-associated protein FlgL family protein [Roseovarius
           sp. 217]
          Length = 336

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 120/359 (33%), Gaps = 26/359 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    I   +    +     +L +   +L  E+ +G+ +D G  L   +  + + E E  
Sbjct: 1   MTFQTIGDLAQSFALRRQGVDLRQQVDRLTLELSSGRVADLGHHLAGNLLPLADIEHELV 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++    +        S  Q+ L  +Q    D +    I L       +          +
Sbjct: 61  LLSAHRTAAREAATDTSIMQSALDRVQTATTD-LATQAITLGTAGTTLQLSNVVVSANLT 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             S +   N    G+ LF+G  +   PL    T  S  + +                   
Sbjct: 120 LGSVIGALNSDVSGRALFAGARTERAPLGSSETLLSTLRSTL------------------ 161

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               + +    ++   +    D  S        +   +     Y++   E + +    + 
Sbjct: 162 ----IGAATRSEVQVRLDAFFDGMSGGFQ-TAIYQGGTTGISPYQLGSGESVALDIRADD 216

Query: 241 RGIRDIM--FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
             +RD +     +  +      LT+  R  L       + +    +   RA LG++E  I
Sbjct: 217 PALRDALKHLALIAVSNDAGLPLTEADRLDLAAGAGVALIEHQDALTTLRANLGLAEARI 276

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++    +  + +  +   S  +  +   A  +L  +  ++E  Y +T +  +L++LN+L
Sbjct: 277 DQSASRISAEISGFEIARSGLVSSDPFEAAVELEQVQFQLETLYTLTARTARLNLLNFL 335


>gi|163742563|ref|ZP_02149949.1| flagellar hook-associated protein FlgL family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384148|gb|EDQ08531.1| flagellar hook-associated protein FlgL family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 335

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 124/346 (35%), Gaps = 29/346 (8%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           +   +  L  D   L +E+ TG++S    +LG  +T + + E+  + +     +N+    
Sbjct: 15  LRNRSVGLKNDISTLTQELSTGKTSQLTQKLGGDLTYLSDVERNLDRLKSFQVANTEAAL 74

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
             S+ Q ++  +   V  + G +  +     D     ++           +   N    G
Sbjct: 75  FASSMQNNIELISDNVVKLTGDIFAVTTSPNDETSQQLSNQ-AEVYLTEAIRSLNGEAAG 133

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           + LFSG ++  +PL    T  S                           EV+       T
Sbjct: 134 RSLFSGKDTEAQPLADLSTLMSSLVT-----------------------EVTPFTTA--T 168

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVNMRGIRDIMFVAVIG 253
           D ++ ++D F+D   +       +   +   +I  TE + VS   N    +  +    I 
Sbjct: 169 DIVQAVKDWFADPLGFDTVMYQGASDLMDPVKIGPTEEVTVSLKANDDAFKQTLQSLAIA 228

Query: 254 TEFLSKNLT--DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
           T      L+     +  + +     +++    +I+ ++ LG  E  I +           
Sbjct: 229 TLVNDPGLSLTSDVKFEMLRSTGVELRESQVQLIQMQSDLGFVEGRIEQTATRNGAAQTS 288

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    ++ +  + +    +L     ++E  + +T +  +LS++ +L
Sbjct: 289 LSLVFNELVQADPYETSTRLDEAQFQLESLFTVTARTSQLSLMRFL 334


>gi|163738041|ref|ZP_02145457.1| flagellar hook-associated protein K [Phaeobacter gallaeciensis
           BS107]
 gi|161388657|gb|EDQ13010.1| flagellar hook-associated protein K [Phaeobacter gallaeciensis
           BS107]
          Length = 335

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 123/346 (35%), Gaps = 29/346 (8%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           +   +  L  D   L +E+ +G++S    +LG  +T + + E+  + +     +N+    
Sbjct: 15  LRNRSVGLKNDISTLTQELSSGKTSQLTQKLGGDLTYLSDVERNLDRLKSFQVANTEAAL 74

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
             S+ Q ++  +   V  + G +  +     D     ++           +   N    G
Sbjct: 75  FASSMQNNIELISDNVVKLTGDIFAVTTSPNDETSQQLSNQ-AEVYLTEAIRSLNGEAAG 133

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           + LFSG ++  +PL    T  S                           EV+        
Sbjct: 134 RSLFSGKDTEAQPLADLNTLMSSLVT-----------------------EVTPFTTAP-- 168

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVNMRGIRDIMFVAVIG 253
           D ++ ++D F+D   +       +   +   +I  TE + VS   N    +  +    I 
Sbjct: 169 DIVQAVKDWFADPLGFDTVMYQGASDLMDPVKIGPTEEVTVSLKANDDAFKQTLQSLAIA 228

Query: 254 TEFLSKNLT--DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
           T      L+     +  + +     +++    +I+ ++ LG  E  I +           
Sbjct: 229 TLVNDPGLSLTSDVKFEMLRSTGVELRESQVQLIQMQSDLGFVEGRIEQTATRNGAAQTS 288

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    ++ +  + +    +L     ++E  + +T +  +LS++ +L
Sbjct: 289 LSLVFNELVQADPYETSTRLDEAQFQLESLFTVTARTSQLSLMRFL 334


>gi|218674574|ref|ZP_03524243.1| flagellar hook-associated protein FlgL [Rhizobium etli GR56]
          Length = 124

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 70/124 (56%)

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
            S N N  G+R +   +V+ +    ++L+D A++ +  K +    Q  SGI+ Q++ LG+
Sbjct: 1   SSTNANSDGMRYLALASVVVSALFGQDLSDDAKSTVASKAIGYAAQATSGIVTQQSQLGL 60

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           S++ + +    L  +++++   +    GV+ + A   ++ L  ++E +Y + +KLQ LS+
Sbjct: 61  SQERLEKADDALDAQSSLLQGKLVDLQGVDTYEASTLVNQLQTQLETAYTLVSKLQSLSL 120

Query: 354 LNYL 357
           +NYL
Sbjct: 121 VNYL 124


>gi|126738559|ref|ZP_01754264.1| flagellar hook-associated protein FlgL family protein [Roseobacter
           sp. SK209-2-6]
 gi|126720358|gb|EBA17064.1| flagellar hook-associated protein FlgL family protein [Roseobacter
           sp. SK209-2-6]
          Length = 334

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 135/352 (38%), Gaps = 29/352 (8%)

Query: 9   SSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHS 68
            S+   +     ELN+D   L +EM TG+ SD   +LG   + + + E     I  ++ +
Sbjct: 9   LSMHAFLQNRNAELNRDIATLSKEMSTGKKSDLTAELGGDFSFLADIEDNLKRIDSQIVA 68

Query: 69  NSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFA 128
            +       + Q  LS     V++M   L+ L    T   +    +   R    S +   
Sbjct: 69  ANETELFAISMQGSLSRAHNGVREMRDDLLSL-STLTTPVEAERFSDQGRQELASTIGAF 127

Query: 129 NMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSM 188
           N    G+ LF+G  +   PLN           S D ++   +             EVS +
Sbjct: 128 NTWSGGRSLFAGTATGTSPLN-----------SADTLMTELVG------------EVSGL 164

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVNMRGIRDIM 247
               + D I+ ++D F D   +       S  ++    I D +   +S   +   ++  +
Sbjct: 165 T--DVADIIQAVKDWFDDPTGFDTAMYVGSTTDVSPVEIGDGDSASLSIRADDERLKHAL 222

Query: 248 FVAVIGTEFLSKN--LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
               I +        ++D  +  + +   S +      +I  +A +G  E+ ++  +   
Sbjct: 223 QSFAILSLVNEPGVTISDQTKVDIVRASASELADSDLKLISAQADVGFVEEQLDRAKTRN 282

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +     +    ++ +  + +   ++     N++E+ Y +T +  +LS++N+L
Sbjct: 283 EASKTSLSLAFNEIVLSDPYETTSRFEASQNQLEILYTVTARSSRLSLVNFL 334


>gi|254510421|ref|ZP_05122488.1| flagellar hook-associated protein FlgL family protein
           [Rhodobacteraceae bacterium KLH11]
 gi|221534132|gb|EEE37120.1| flagellar hook-associated protein FlgL family protein
           [Rhodobacteraceae bacterium KLH11]
          Length = 335

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 125/360 (34%), Gaps = 29/360 (8%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    I   +    +   + E+      L  EM TG++ D   +L    + +L+ ++  +
Sbjct: 1   MTLNSIGDLARGLTLRTRSTEIKSQIETLSYEMSTGKAQDISGRLDGDYSHLLDLDRNLD 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +     + +         Q  L++    + +M   L+              +A   R+ 
Sbjct: 61  RLEAFSVATAEARLFTDAMQLSLTTFSDSLAEMSAALLSFGTSNQAVTHTQASAQ-ARNE 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            ++ ++  N    G+ LFSG  +   PL                         + +LL  
Sbjct: 120 LDTMISSLNTRTGGRSLFSGTATDVSPL-----------------------PPADTLLTA 156

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVN 239
              E++ + +   TD  +  E+ F+D   +       +   +   +I + E IDV     
Sbjct: 157 LQAELTGLTSA--TDIRQAAENWFNDPTGFDAMIYQGNATALAPMQISENEQIDVPITAT 214

Query: 240 MRGIRDIMF--VAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
              ++  +            +  L    +  L  ++   +       +  RA +G +E  
Sbjct: 215 DPALKAALRDVAVAALASEDALALAPEVQTALFTELGVNLANTQDETVNLRAQVGAAEAR 274

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +            +   ++ I  + +   A+L T+  ++E  Y +T +   LS++N+L
Sbjct: 275 VEQAATRNAAAKTSTEHARNELIAADPYETAARLQTVQFQLESLYSVTVRNANLSLVNFL 334


>gi|23005491|ref|ZP_00048278.1| COG1344: Flagellin and related hook-associated proteins
           [Magnetospirillum magnetotacticum MS-1]
          Length = 127

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 64/126 (50%)

Query: 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVL 291
           +  SA+ N    R +    V+ +     + ++ A+   T K++  + QG SG+   +A L
Sbjct: 1   MTTSASANAEPFRKLAMAYVVASAIGLPSFSNEAQEAATGKVMELLSQGSSGLTAMQADL 60

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351
           G S+  I +    +  ++ ++   I     V+   A +++  +  +++MSY +T +L+ L
Sbjct: 61  GRSQSRITDANERMTKQSALLTGQIHDLESVDPAEAKSRVDAITTQMQMSYGLTAQLRSL 120

Query: 352 SILNYL 357
           S++N+L
Sbjct: 121 SLINFL 126


>gi|310816850|ref|YP_003964814.1| flagellin and related hook-associated protein [Ketogulonicigenium
           vulgare Y25]
 gi|308755585|gb|ADO43514.1| flagellin and related hook-associated protein [Ketogulonicigenium
           vulgare Y25]
          Length = 333

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 126/357 (35%), Gaps = 25/357 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  T +S             ++ +    L  E+ +G++ D   QLG R       +    
Sbjct: 1   MAFTPLSDLGRHFANQQANVQMRERLAILTAEVASGEAHDLPAQLGTRANQFAAHDYRLG 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            IA    + SL+  +L+ +Q+ L ++  + +  +   +I +  +    +    A   R+ 
Sbjct: 61  MIASYSKAGSLMATQLAAAQSALENI-DLQRSTISTQLIAISPQATQVELSAGAEAARNG 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +   ++  N    G  LF+G               + A  S D ML         +    
Sbjct: 120 FAQLISALNTQIGGVTLFAGT-----------ASGAPATASADVMLSAIETYIGGA---- 164

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                  +    + + I +        +         +  N+  +I     + +    + 
Sbjct: 165 -------VTVSDVQNGIAEWFADIFPTD--PAEGYQGNTQNMGRQIDKDLSVALDVRADD 215

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
             +  ++              +  A+  L  K    +    SG+ E RA +G++E+ + +
Sbjct: 216 PVVMQLLQDLATAAIADRLGFSGVAQAQLLNKAGEGLITQASGLTEVRARVGLAEQTLAQ 275

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  L  +   + T  +    V+   A   L  + +++E+ Y +T +L  L++ NYL
Sbjct: 276 SQTRLAAEKTSLGTARNDLAQVDTFEAATALQAVSDQLELHYTLTARLAALTLTNYL 332


>gi|304321122|ref|YP_003854765.1| flagellar hook-associated protein FlgL family protein [Parvularcula
           bermudensis HTCC2503]
 gi|303300024|gb|ADM09623.1| flagellar hook-associated protein FlgL family protein [Parvularcula
           bermudensis HTCC2503]
          Length = 329

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 112/342 (32%), Gaps = 34/342 (9%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
             +   ++  ++ +E VTG+  D    LG+R        +  + I       S+ + RLS
Sbjct: 20  AIQTSRQELDRVSQEFVTGRVKDLVSSLGSRAGEYNTITKAIDDIDRAGSRLSITSNRLS 79

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
                L S++  + +      ++             +   R   ES  T  N    G+ L
Sbjct: 80  QIDIALKSVRTTIGEF-ETRALVDTQINGEVGRSQTSATARSHLESVFTSLNSQQGGRAL 138

Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
           F+G + +   L    T  +  + +                          +        I
Sbjct: 139 FAGDDVTGVALTDVETFLASVEAA--------------------------LGGATDQATI 172

Query: 198 KQLEDKFSDDEY-WANNWSNASDHNIKY-RIKDTEGIDVSANVNMRGIRDIMFVAVIGTE 255
                 F  D   +  +     D      R+ D   +D S   +   I+ ++        
Sbjct: 173 DTTITAFFADGGTFDTSIYTGGDGEAASVRLPDGAVVDYSIKADDPSIKTLVEGLTRLA- 231

Query: 256 FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
                L         +   + +  G +GI   +A +G     ++        +  ++   
Sbjct: 232 ----FLPADVDTPYVENAATQIVSGKTGIASLQADVGRQTNLVSLAEGLAAEEKRLLQEN 287

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  +G++   A + +  L  +++ +Y +T +L +LS+LN L
Sbjct: 288 ENALVGIDPFEAASNVQRLEVQLQAAYQLTARLGRLSLLNVL 329


>gi|255262565|ref|ZP_05341907.1| flagellar hook-associated protein FlgL family protein, putative
           [Thalassiobium sp. R2A62]
 gi|255104900|gb|EET47574.1| flagellar hook-associated protein FlgL family protein, putative
           [Thalassiobium sp. R2A62]
          Length = 336

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 126/359 (35%), Gaps = 26/359 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  T I   S          +L     +  +E+ TGQ SD    L    + +   +Q   
Sbjct: 1   MTMTSIGDRSQAFFNRQHNFDLRSRLNQFTQELSTGQVSDPSSHLAGDFSRLGSVDQAIA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                L + +         Q  L S+Q  V ++      +   + D+           ++
Sbjct: 61  RNNSYLQNMTQKDILFDHVQLSLGSIQDRVLELEISARSVDLDQQDS-AIARIGKNAENA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +++ V   N T  GQ +FSG  +              A ++   +L G   E      A 
Sbjct: 120 FDAIVGKLNETRLGQSVFSGNATD-----------KPATQTAAVILDGLRSELPLGATAT 168

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V          F      +F  +          S ++    I   E +D    V+ 
Sbjct: 169 DVQQVVD------EWFDTGPTGRFYSE------IYTGSKNSAPISISSIEKVDPLPKVDD 216

Query: 241 RGIRDIMFVAVIGT--EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
             IR  +   ++       S  L    +  L    +  + +   G+I+  AV G S++ I
Sbjct: 217 DAIRHTLKGVIMIALTNQPSSKLGRSEKLDLIGAAVEPLGKATIGLIDMSAVAGSSQERI 276

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +E   L  +N  +  Y +K +  +Q    + L  +  ++E  Y +T +L +LS++ YL
Sbjct: 277 AQETSRLNAENTSMGIYRNKMVSADQFETASNLQQVQLQLETHYTVTARLSRLSLVGYL 335


>gi|89067519|ref|ZP_01155032.1| flagellar hook-associated protein FlgL family protein [Oceanicola
           granulosus HTCC2516]
 gi|89047088|gb|EAR53142.1| flagellar hook-associated protein FlgL family protein [Oceanicola
           granulosus HTCC2516]
          Length = 333

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 122/337 (36%), Gaps = 28/337 (8%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
           T ++     +L +E+ TG+ +D  L L    T +   E         + +N       + 
Sbjct: 19  TVQVKDRLHRLSDELSTGKVADVALALHGETTRVSHLEHRIALADSHVSANRETGGLFAQ 78

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +Q  L  ++   +  +   V+ L   +  ++    A   R+++ES V   N    G+ LF
Sbjct: 79  AQLVLGKIED-RRAALTEQVLSLPANSTRDQRESVAAAARETFESIVGDLNHRVGGKSLF 137

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
           +G  +    L            + D +L   L   + +  A                 + 
Sbjct: 138 AGEATDRAAL-----------AAPDVLLNDLLAAVAGASGA--------------DQLLD 172

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYR-IKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
            ++  F D   + +            R + D     +SA  +M  +R ++  A +G    
Sbjct: 173 AVDAWFDDPAGFESRGYLGDPAAYLNRPLGDGTSATLSARADMPALRGLLKAAALGALAA 232

Query: 258 -SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
            S  L   A + + +     +      +   +  LG+ E  I +       + + +    
Sbjct: 233 ASPGLGARAADAVLRHSGVLLASAAQPLALAQGSLGLQEDRIEQASAQQAAERSSLAILQ 292

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           ++    + +     L ++  ++EMS+M+T +L +LS+
Sbjct: 293 NELTSADPYATATALQSVEIQLEMSFMLTARLSRLSL 329


>gi|110677961|ref|YP_680968.1| flagellar hook-associated protein [Roseobacter denitrificans OCh
           114]
 gi|109454077|gb|ABG30282.1| flagellar hook-associated protein [Roseobacter denitrificans OCh
           114]
          Length = 334

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 128/359 (35%), Gaps = 31/359 (8%)

Query: 4   TGISTSSIFER--MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
           + +S   + +   M   +  L +D  +L +E+ +GQ SD    L      +   E+    
Sbjct: 2   SSVSLGDLSQAFMMQRRSVALRQDMTRLTDELSSGQVSDIKEVLAGNHNYLSGLERSLET 61

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           +     +NS         Q+ L  +Q     +   L++   G          +   +   
Sbjct: 62  LQGFSVANSEAKYFTDAMQSSLDRVQDFSGQLGLDLLLASGGPVGVIAGSP-SENAKTQL 120

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           +  +   N    G+ LF+G  +   PL                       EN+++LL   
Sbjct: 121 QGILNSLNADIAGKSLFAGAATDRVPL-----------------------ENAETLLTEL 157

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVNM 240
            + ++        D +   E+ F+D   +       S   +    + +TE + +    N 
Sbjct: 158 SIAIAGQTTPD--DIMTAAENWFADPAGFDTLIYTGSGTALAPFSLSETERVSLDVRAND 215

Query: 241 RGIRDIMFVAVIGT--EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           + ++D++    +    +  +  LT   +  L   +   ++     + + R+ +G +E  I
Sbjct: 216 QALKDVLMNVAVAALTDDPALGLTVPQQAELFGTVGLGLKSNQDQLTDLRSRIGFTEARI 275

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                  Q +    +   +  +  +      QL  +  +++  Y +T +  +LS++N+L
Sbjct: 276 EMIDARNQAEQTSTEVARNALLLADPFETATQLENVQFQLQALYSVTVRSSQLSLVNFL 334


>gi|163735545|ref|ZP_02142977.1| flagellar hook-associated protein [Roseobacter litoralis Och 149]
 gi|161391165|gb|EDQ15502.1| flagellar hook-associated protein [Roseobacter litoralis Och 149]
          Length = 321

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 125/346 (36%), Gaps = 29/346 (8%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           M   +  L +D  KL EE+ +GQ SD    L      +   E+    +     +NS    
Sbjct: 2   MQRRSVALRQDMTKLTEELSSGQVSDIKEVLAGNHNYLSGLERSLETLNGYSVANSEAKY 61

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
                Q+ L  +Q     +   L++   G          +   +   E  +   N    G
Sbjct: 62  FTGAMQSSLDRVQDFSGQLGLDLILAGGGPVGVIAGSP-SENAKTQLEGILNSLNADIAG 120

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           + LF+G  + + PL                       E++++LL    + ++        
Sbjct: 121 KSLFAGAATDQVPL-----------------------ESAETLLTELRIALAGQTTPD-- 155

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVNMRGIRDIMFVAVI- 252
           D +   E+ F+D   +       S   +    + +TE I +    N   +++++  A + 
Sbjct: 156 DIMTAAENWFADPAGFDALIYTGSATALAPFSLSETERISLDVRANDPALKNLLMNAAVS 215

Query: 253 -GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
              +  +  LT   ++ L +     +Q     + + R+ +G +E  I       Q +   
Sbjct: 216 ALADDPTLGLTVPQQSELFRTAGLGLQSNQDQLTDLRSRIGFTEARIEMIASRNQAEETS 275

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +   +  +  +      QL  +  +++  Y +T +  +LS++N+L
Sbjct: 276 TEVARNALLLADPFETATQLENVQFQLQALYSVTVRSSQLSLVNFL 321


>gi|260428885|ref|ZP_05782862.1| flagellar hook-associated protein [Citreicella sp. SE45]
 gi|260419508|gb|EEX12761.1| flagellar hook-associated protein [Citreicella sp. SE45]
          Length = 333

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 116/346 (33%), Gaps = 28/346 (8%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           +      LN++  +L  E+ +G   D    LG  +T +L  ++    +     + +  + 
Sbjct: 13  LRTHQTRLNQEMDRLGVEIASGFVRDPASHLGGDITGLLAIDRTLAQLETYRVNTTEASF 72

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
              T Q  L  +Q   +++   L+ +     D       +     +    +   N +  G
Sbjct: 73  LTGTMQNALEEIQIRAENVSQVLLSVELTPNDE-MLNTMSSEAESALNQMLNGLNRSVGG 131

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           ++LFSG  +  + +    T                   N          +V+ + A    
Sbjct: 132 RFLFSGTATDGRAVIDSDT-----------------MLNELRTTLAGQTDVAGVEAA--- 171

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVNMRGIRDIMFVAVIG 253
             +    D  +    +       S  ++   R+  TE  +V    + +  RD M      
Sbjct: 172 --LDAWFD--TAGGGFETTGYLGSTTSLAPMRLSKTESANVDIRADDQVFRDTMKALAKA 227

Query: 254 TEFLSKNLT--DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
                 +L   +  +  L       +Q   + ++E R+ LG  ++ I E       +   
Sbjct: 228 ALATDSSLALPENVKVELIGNAALDLQTAQAHMVELRSGLGALQQRIEETATRNSAERAA 287

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 + +G +Q     +      ++E  Y IT +  ++S++ +L
Sbjct: 288 TTIARVELVGTDQFETATRYENTRAQLESLYAITVRSSRMSLVGFL 333


>gi|114798459|ref|YP_758979.1| putative flagellar hook-associated protein FlgL [Hyphomonas
           neptunium ATCC 15444]
 gi|114738633|gb|ABI76758.1| putative flagellar hook-associated protein FlgL [Hyphomonas
           neptunium ATCC 15444]
          Length = 325

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 129/341 (37%), Gaps = 34/341 (9%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           S  S     NI         V   +E VTGQ +D    LG R+   +  ++    I  + 
Sbjct: 8   SIVSASFSQNIADMRARATIV--SQESVTGQYADLTKHLGGRIGDAMISDKALLDIEHQR 65

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
               +   RL  +Q  L+ +Q+ +  +   ++  L G  D     + +   + +     +
Sbjct: 66  GLLGVREGRLDLTQQSLAGVQERISGLEVQMLTAL-GVGDVPGKDLVSRDAKAALSDVFS 124

Query: 127 FANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS 186
             N     ++LFSG  ++ +P +             DQ+L    +  S +          
Sbjct: 125 ALNSRHGDRFLFSGDETATQPFSN-----------TDQLLADIRQIASTA---------- 163

Query: 187 SMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI 246
            ++A      +       +    W  +              D + +  +    +  I  +
Sbjct: 164 -IDAADFEVQLDDYFQSPTG--GWQTSIYGG-----TSLTSDQDSVTATDPAIVEIISGL 215

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
             +A+ G+      LTD     + ++    +  G S ++  RA +GI ++ + + +  L 
Sbjct: 216 AVMAISGSADNLTLLTD--FPEIVRESAERIGTGTSALVNLRADVGIIQERVAKAKEALD 273

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTK 347
            +  I+++  +  +G +Q+ A ++L  L   +E +Y++T++
Sbjct: 274 TEETILNSVHNNIVGRDQYDAASELKQLEASLEAAYVLTSR 314


>gi|146278771|ref|YP_001168930.1| hypothetical protein Rsph17025_2738 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557012|gb|ABP71625.1| hypothetical protein Rsph17025_2738 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 333

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 119/359 (33%), Gaps = 28/359 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    +   +    +      L  D+ +L  E++TG ++D   ++G  +  +   +    
Sbjct: 1   MSAVSLGDLARTFMLRRQNVALKADAQRLSTEVITGLAADTRRKVGGDLAVLNSMDSSLA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A R    +      S  Q  L+ M  +   +   L+ L  G   +           D+
Sbjct: 61  LLAARSSITTETAMTASAMQTALAQMDGVASGLSLDLLSLTPG-GSSTTIDQLGEQAEDA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           + S V+  N     + +F G                 A       L G L+  +    + 
Sbjct: 120 FRSAVSALNTQVGDRSIFGGTR------------PQAAAVMDADALLGLLDTVAAGAASA 167

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
             ++ +          I    D  +     A       D      +   + + +    N 
Sbjct: 168 ADVQTA----------IGNWFDSPAGYAGLAYG---GGDVLAPVTVGSGKKVTLGVTAND 214

Query: 241 RGIRDIMFVAVIGTEFLSKNLT--DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
             +R+ +    +        L      R  L +     + QG    ++  A LG +E  I
Sbjct: 215 PALRETLKGLAMAAMLNRGALAGASADRAELAQIAGKVLVQGHGERVDLAARLGRTEARI 274

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +       +   +       +G++++ A ++L    +++E  Y +T +L +LS+ +YL
Sbjct: 275 EQAASAAAAEATALKIARKDLLGIDEYEAASRLQATQSQLETLYSLTARLSRLSLTDYL 333


>gi|114762175|ref|ZP_01441643.1| flagellar hook-associated protein FlgL family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114545199|gb|EAU48202.1| flagellar hook-associated protein FlgL family protein [Roseovarius
           sp. HTCC2601]
          Length = 334

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 113/346 (32%), Gaps = 28/346 (8%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           +      LN+D  +L  E+ TG   D    LG  V+S++  ++    +     + +    
Sbjct: 13  LRTHQTRLNRDLDQLGTEIATGFVRDPVSHLGGDVSSLVSIDRRLAQLETYRVNTTEAAF 72

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
              T Q  L  +Q   + +   L+ L     D   F   +    ++    +   N +  G
Sbjct: 73  LTGTMQTTLDEIQTRSELLSQVLLALELTPNDE-MFRTLSTEAGNALGHMLNGLNRSVAG 131

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           ++LFSG  +    +     +           L G                        + 
Sbjct: 132 RFLFSGTATDTPAV----IEGEAMIAELQTALAGAT------------------TVTDVE 169

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVNMRGIRDIMFVAVIG 253
             +    +       +  +    S  ++   ++  TE   V    +    RD+M      
Sbjct: 170 TALDDWFNTP--GGGFETDGYLGSTTSLAPLQLSATESAGVDIRGDDAVFRDVMKAMAKA 227

Query: 254 TEFLSKNL--TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
                  L  +   +  L       +Q  ++ ++E RA LG  E+ I E       +   
Sbjct: 228 ALASDDTLTLSGAVKVDLISSAALDLQTAMASMVELRAGLGTVEQRIEETTARNAAERTA 287

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 + +G +Q     +     +++E  Y IT +  ++S++ +L
Sbjct: 288 TSIARLELVGTDQFETATRYENTRSQLESLYAITVRSSRMSLVEFL 333


>gi|83595980|gb|ABC25340.1| flagellin and related hook-associated protein [uncultured marine
           bacterium Ant24C4]
          Length = 326

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 116/337 (34%), Gaps = 25/337 (7%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
           L      L  ++ +G+ SD     G   T     +     +     S     + LST+Q 
Sbjct: 13  LKTALNSLTGQLSSGEVSDKVKASGGDTTRFNAIDNRLKVLDSFSQSIKETQQTLSTTQV 72

Query: 82  HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141
            L +       M G L++++   +D  +    +   R+S++  V+  N     + LFSG 
Sbjct: 73  LLDNFDSKRDAMTGSLLLVIPDSSDF-QIEEASRAARNSFDGLVSTLNTRLGDESLFSGT 131

Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201
             S+  L       S A    D + Q            G   + + + A  +  +     
Sbjct: 132 AVSQAALT------SPAVMLADIVTQ-----------IGGSTDFNVITAT-VDTWFDDPA 173

Query: 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI-GTEFLSKN 260
             F    Y  +          +  + +   I +    +  GI+ ++  AV+         
Sbjct: 174 GGFLTLGYQGDLGEKP-----ERHLDNDTRIKLGVRADDAGIKAVLKGAVLAVVGQELLG 228

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
           L    +  L  +    +Q     + + +  +G  E  +    +   ++ + +    +   
Sbjct: 229 LDKRTQAALLFEGGLQLQSAADDLAQVKGRIGHFEGEVERIAISQSSEISALSMARNLIT 288

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +      +L  +  ++E  Y +T +L +LS++ YL
Sbjct: 289 QADPFEVATELKAVQLQLETHYAMTARLSRLSLVEYL 325


>gi|77464883|ref|YP_354387.1| putative flagellar hook-associated protein [Rhodobacter sphaeroides
           2.4.1]
 gi|77389301|gb|ABA80486.1| putative flagellar hook-associated protein [Rhodobacter sphaeroides
           2.4.1]
          Length = 333

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 122/359 (33%), Gaps = 28/359 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    +   +    +      L  D  +L  E+VTG ++D   + G  ++++   +    
Sbjct: 1   MSAVSLGDLARTFLLRRQNAALKADVQRLSTEVVTGVAADVHQKTGGDLSALQAIDGSLT 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A R  +        S  Q  L+ +  +  DM   L+ +    T      +      ++
Sbjct: 61  VLAARASATGEAASIASALQTGLARLDGLASDMSMKLLSVGNNATAMTTDQLG-EEAEEA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           + + V   N     + +F+G    +  +    T       + D ++ G            
Sbjct: 120 FRTAVATLNTRVGDRSIFAGTRPQQAAVLDADT----ILTALDTVIAGAT---------- 165

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                    A  +   I+   D   D   ++              I   E + +    + 
Sbjct: 166 --------TAADVQTAIEAWFD---DPSGYSALAYTGGGRPASVTIATGETVALEVTADS 214

Query: 241 RGIRDIMFVAVIGTEFLSKNLT--DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
             IRD +    +        L+     R  L ++  S + QG +  ++  A LG +E  I
Sbjct: 215 SAIRDSLKGLALAAMLNRGALSGAPSERVSLGERAGSALLQGQTARVDLGARLGRAEARI 274

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   +    +   +     + +G +++     L     ++E  Y +T +L ++S+ +YL
Sbjct: 275 HSATISNAAEVTSLQMARKELLGTDEYETATLLKATQAQLETLYNLTVRLSQMSLTDYL 333


>gi|260574382|ref|ZP_05842386.1| flagellar hook-associated protein FlgL family protein [Rhodobacter
           sp. SW2]
 gi|259023278|gb|EEW26570.1| flagellar hook-associated protein FlgL family protein [Rhodobacter
           sp. SW2]
          Length = 334

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 112/359 (31%), Gaps = 28/359 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    +   +    +      L      L  E+ TG +SD G Q    +  +   +   +
Sbjct: 1   MTLVSLGDMAQSFMLRRQNAALKAQLQTLSTEVTTGIASDTGRQTRGDLAPLSAIDASLS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +     + S         Q  LS+++++  +    L+   E   D           R  
Sbjct: 61  RLDAYGAATSESGLFTEAMQTALSTIEEMAAEFGPALLQTAESSLDV-SISNIGNTARQK 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +E+ +   N     + LF+G  ++   L            + D  + G +          
Sbjct: 120 FETTIATLNARVGDRSLFAGQATNGPAL----ANSETILAALDTAILGAV---------- 165

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                   +A  +   I    D   D   +A+             I   E  ++      
Sbjct: 166 --------SATDVATAISTWFD---DPAGYASVAYQGDASLSPLAIAAGESAEIKVTAMD 214

Query: 241 RGIRDIMFVAVIGTEFLSKNL--TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
             +R+ +    +        L  +  +R  L +     +    +      A LG+ E  I
Sbjct: 215 PAVRETLKGFAMAAMLDRGALAGSPESRADLARLAGEKLVGTATDRAYLAADLGVVEGQI 274

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              +     +   +       + V+ +    +L +   ++E  Y IT +L +LS++++L
Sbjct: 275 ESAKARNGAETTALQIARLGIVSVDPYDTATKLESTQTQLETLYTITARLSRLSLMDFL 333


>gi|126734125|ref|ZP_01749872.1| flagellar hook-associated protein FlgL family protein [Roseobacter
           sp. CCS2]
 gi|126716991|gb|EBA13855.1| flagellar hook-associated protein FlgL family protein [Roseobacter
           sp. CCS2]
          Length = 326

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 121/337 (35%), Gaps = 25/337 (7%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
           +  +  +L E + +G+ +D    L          +     +   L   S   + L   Q 
Sbjct: 14  IKSELFELAESLSSGKVADLTKSLNGDTARFSGVQYSLTQLDGYLQVASETEQTLGNIQI 73

Query: 82  HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141
            L+ +       V  L +L+   +   +    A   + S+E  VT  N     + L SG 
Sbjct: 74  ILNKVDNTRARTVESL-LLVNESSTTAQVDEAARASQSSFEEMVTALNTRIADRALMSGN 132

Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201
           + +  PL            + D ML G           G  L+ +++ A  +  +     
Sbjct: 133 SVNTTPL-----------VAADDMLAGLQTA------IGASLDPATIIAT-VDTWFNDPA 174

Query: 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF-LSKN 260
             F+     A  +   +   I+ R+ + + I + A  +   ++ ++  A +     +   
Sbjct: 175 GGFA-----ATGYQGDTGGPIERRVTEDQSIRIDARADDPAVKQVLQGAALAALADMLPG 229

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
           L   A+  L     S +    S ++  +A +G +E ++   +     +   +    +   
Sbjct: 230 LDRAAKVDLLTNAASQLYGSASSLVAVQARVGFAENSVARAQTETGAQQTTLRQVANDLS 289

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +     ++L     ++E  + +T +L +LS+L ++
Sbjct: 290 LADPFETASRLQAQQTQLETFFSLTARLSQLSLLRFI 326


>gi|89056666|ref|YP_512117.1| flagellar hook-associated protein FlgL family protein [Jannaschia
           sp. CCS1]
 gi|88866215|gb|ABD57092.1| hypothetical protein Jann_4175 [Jannaschia sp. CCS1]
          Length = 336

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 116/359 (32%), Gaps = 26/359 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M     S ++ F+ +     +   D  +L  E+ +G+ +D G  L    +++ +  +   
Sbjct: 1   MSIATYSDAAQFQLLRRDATQHRADLARLTSELSSGRVADLGQALQGDYSTLSDITRSLR 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                + S S     +   Q+ L  +   ++     L+ +  G    +   +        
Sbjct: 61  LNTTFITSVSEAAIAVGVRQSALERVASELEGYGSSLLAV-TGAGSLSDIQLKLADAPAR 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           ++  V   N    G+ LFS               ++    S + ML       + +L A 
Sbjct: 120 FDQAVDSLNTRLAGRSLFS-----------ADDPNATPLISSEDMLAELRTVAAGALDAA 168

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
             +   +        F+           Y    W   +       I + +  +       
Sbjct: 169 TAVADVT------AWFMDT------GGGYETLAWQGGTGDPPPVLIGEGQSAETGVTALN 216

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARN--VLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
             IR+ +    +      +      +            V +  S +I  RA LG  E  +
Sbjct: 217 PAIRETLASLALAVLASEEVPASAEQEKRAFVASAAEQVLRAESNLIGLRARLGTEEARV 276

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            + RV  +     +     + +  + +    +L  +  ++E  Y++T ++ +LS+  YL
Sbjct: 277 EDARVTAEATRASLQIEYGRLVEADPYDTATELEAISLRLESLYIVTARVSRLSLTEYL 335


>gi|218658935|ref|ZP_03514865.1| flagellar hook-associated protein FlgL [Rhizobium etli IE4771]
          Length = 110

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 58/110 (52%)

Query: 224 YRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSG 283
            RI ++E I+ S N N  G+R     +V+ +  L +NL+  A   ++K+ +S   +  SG
Sbjct: 1   SRISNSEVIESSTNANSEGMRYFALASVMTSALLGQNLSTDAMTTVSKQAISYTAKATSG 60

Query: 284 IIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
           ++ Q + LG+S++ + +    L  ++NII   +    GV+ + A   + T
Sbjct: 61  LVTQASQLGLSQERVKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKT 110


>gi|126463725|ref|YP_001044839.1| putative flagellar hook-associated protein [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105389|gb|ABN78067.1| putative flagellar hook-associated protein [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 333

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 122/359 (33%), Gaps = 28/359 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    +   +    +      L  D  +L  E+VTG ++D   + G  ++++   +    
Sbjct: 1   MSAVSLGDLARTFLLRRQNAALKADVQRLSTEVVTGLAADVRQKTGGDLSALQAIDGSLT 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A R  +        S  Q  L+ +  +  DM   L+ +    T      +      ++
Sbjct: 61  VLAARASATGEAASIASALQTGLARLDGLASDMSMKLLSVGNNATAMTTDQLG-EEAEEA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           + + V   N     + +F+G    +  +    T       + D ++ G            
Sbjct: 120 FRTAVATLNTRVGDRSIFAGTRPQQAAVLDADT----ILTALDTVIAGAT---------- 165

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                    A  +   I+   D   D   ++              I   E + +    + 
Sbjct: 166 --------TAADVQTAIEAWFD---DPSGYSALAYTGGGRPASVTIATGETVALEVTADS 214

Query: 241 RGIRDIMFVAVIGTEFLSKNLTD--GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
             IRD +    +        L+     R  L ++  S + QG +  ++  A LG +E  I
Sbjct: 215 SAIRDSLKGLALAAMLNRGALSGALSERVSLGERAGSALLQGQTARVDLGARLGRAEARI 274

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   +    +   +     + +G +++     L     ++E  Y +T +L ++S+ +YL
Sbjct: 275 HSATISNAAEFTSLQMARKELLGTDEYETATLLKATQAQLETLYNLTVRLSQMSLTDYL 333


>gi|221640804|ref|YP_002527066.1| flagellar hook-associated protein [Rhodobacter sphaeroides KD131]
 gi|221161585|gb|ACM02565.1| flagellar hook-associated protein precursor [Rhodobacter
           sphaeroides KD131]
          Length = 333

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 123/359 (34%), Gaps = 28/359 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    +   +    +      L  ++ +L  E+VTG ++D   + G  ++++   +    
Sbjct: 1   MSAVSLGDLARTFLLRRQNAALKAEAQRLSTEVVTGLAADVRQKTGGDLSALQAIDGSLA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A R           S  Q  LS +  +  DM   L + +                 ++
Sbjct: 61  VLAARASVTGEAASIASALQMGLSRLDGLASDMSIKL-LSVGNNATATTTDQLGEEAEEA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           + + V   NM    + +F+G    +  +    T       + D ++ G            
Sbjct: 120 FRTAVATLNMRVGDRSIFAGTRPQQAAVLDADT----ILTTLDAVIAG------------ 163

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                    A    D    +E  F D   ++              I + E + +    + 
Sbjct: 164 ---------ASTAADVQTAVEAWFDDPADYSALAYTGGSRPASVMIANGESVALEVTADS 214

Query: 241 RGIRDIMFVAVIGTEFLSKNLT--DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
             +RD++    +        L+     R  L++   S + QG +  ++  A LG +E  I
Sbjct: 215 GAVRDLIKGLALAAMLNRGALSGAPSERASLSELAGSALLQGQTTRVDLEARLGRAEARI 274

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   +    +   +     + +G +++     L     ++E  Y +T ++ ++S+ NYL
Sbjct: 275 HSATISNAAEATSLQMARKELLGTDEYETATLLKATQAQLETLYNLTARISQMSLTNYL 333


>gi|332559782|ref|ZP_08414104.1| FlgL2 [Rhodobacter sphaeroides WS8N]
 gi|332277494|gb|EGJ22809.1| FlgL2 [Rhodobacter sphaeroides WS8N]
          Length = 333

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 122/359 (33%), Gaps = 28/359 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    +   +    +      L  D   L  E+VTG ++D   + G  ++++   +    
Sbjct: 1   MSAVSLGDLARTFLLRRQNAALKADVQLLSTEVVTGLAADVRQKTGGDLSALQAIDGSLT 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A R  +        S  Q  L+ +  +  DM   L+ +    T      +      ++
Sbjct: 61  VLAARASATGEAASIASALQTGLARLDGLASDMSMKLLSVGNNATAMTTDQLG-EEAEEA 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           + + V   N     + +F+G    +  +    T       + D ++ G            
Sbjct: 120 FRTAVATLNTRVGDRSIFAGTRPQQAAVLDADT----ILTALDTVIAGAT---------- 165

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                    A  +   I+   D   D   ++              I   E + +   V+ 
Sbjct: 166 --------TAADVQTAIEAWFD---DPSGYSALAYTGGGRPASVTIATGETVALEVTVDS 214

Query: 241 RGIRDIMFVAVIGTEFLSKNLTD--GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
             IRD +    +        L+     R  L ++  S + QG +  ++  A LG +E  I
Sbjct: 215 SAIRDSLKGLALAAMLNRGALSGALSERVSLGERAGSALLQGQTARVDLGARLGRAEARI 274

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   +    +   +     + +G +++     L     ++E  Y +T +L ++S+ +YL
Sbjct: 275 HSATISNAAEVTSLQMARKELLGTDEYETATLLKATQAQLETLYNLTVRLSQMSLTDYL 333


>gi|296534170|ref|ZP_06896662.1| possible flagellar hook-associated protein [Roseomonas cervicalis
           ATCC 49957]
 gi|296265506|gb|EFH11639.1| possible flagellar hook-associated protein [Roseomonas cervicalis
           ATCC 49957]
          Length = 354

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 107/354 (30%), Gaps = 23/354 (6%)

Query: 17  ILTKELNKDSVKLHEEMVTG-QSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKR 75
           +    L     +L  ++ +G Q ++    LG           +     E          R
Sbjct: 11  VSALRLQDRFTELTRQVSSGGQRAESYAGLGRDAARASSLAAQMAQRGELQAVAERGEGR 70

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQ 135
            + +Q  +  +  I   M      L       +         R + +   T  N   EG+
Sbjct: 71  AAYTQTVMDRLAGIAGQMADSAASL---NGTMSSLSQIRENARLALQEVSTLLNERYEGE 127

Query: 136 YLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTD 195
            +F G +    P+       +  +     M  G           G  ++        +  
Sbjct: 128 AIFGGSDLQNDPVV------APQQMLKTGMFTGIGALLDDYGSQGGDIDALFGQMTALAT 181

Query: 196 FIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI------------ 243
                   FS     A     A          +  GI++    N                
Sbjct: 182 SNADGVSPFSSYANAAAEGGVADSRRAVP-TGNGTGIEIGLYANRNAAVGETGSTTGAWS 240

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           RD++    +      +    G  + L +K +  ++   +G  ++   LG ++  ++    
Sbjct: 241 RDLIMGLTVLANLTEEQAAQGNFSTLVQKTVGLLRDAGNGANDEIGALGTAQSRLSAAAS 300

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +   + ++T +     ++   A  +L  +  +++ SY     L ++S++NYL
Sbjct: 301 QHKAVYDQVETQLGDLTTIDIAEAQVRLQQVNLQLQGSYQALAMLGRVSLVNYL 354


>gi|218671599|ref|ZP_03521269.1| flagellar hook-associated protein FlgL [Rhizobium etli GR56]
          Length = 73

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 43/72 (59%)

Query: 286 EQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMIT 345
            Q + LG+S++ + +    L  ++NII   +    GV+ + A   + TL  ++E +Y I 
Sbjct: 2   TQASQLGLSQERVKKSNDALDAQSNIIKNKLVDLQGVDPYEASTLVKTLETQLETAYTIV 61

Query: 346 TKLQKLSILNYL 357
           +K+Q+LS++NYL
Sbjct: 62  SKIQQLSLVNYL 73


>gi|296283219|ref|ZP_06861217.1| flagellin, putative [Citromicrobium bathyomarinum JL354]
          Length = 301

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 100/360 (27%), Gaps = 66/360 (18%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T ++T  +   M    +   ++  K    + TG+ +     LG      +          
Sbjct: 2   TRVATIPLQRTMADAIQRAQQNLAKTQTSLSTGKKAQDYAGLGTEAVRTMSARSMLAKQE 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
            +   +  VT  L+   AH++ +   + D+   +   +  +  +         ++ ++E 
Sbjct: 62  AQAVVSKHVTTSLAIYDAHVTGLDNTLIDLRTRMATAIGTEDSSG----LQETIKGAFEQ 117

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           F +  N  + G  LF G  +   P       D  A  + D                    
Sbjct: 118 FRSSLNAKEGGIPLFGGSRTDVLPFAPESLADVAATPASDAFRND--------------- 162

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM--- 240
                                              D      + +   +      +    
Sbjct: 163 -----------------------------------DVRAVAHLSEGTSVTYGITASDLGA 187

Query: 241 ---RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
                 R +     IG           A+    +  L  +  G  G+    A  G  +  
Sbjct: 188 EIYEAFRTLAAAGPIGERL------TDAQKTALQDALVQIDTGSVGLRAANAENGRKQAR 241

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +       + ++ ++   I+ +   +       L+     +E SY +  +L +L++  YL
Sbjct: 242 VETLGERAEQRSLVLSDIIAANEDADLGQVAVDLAQQKATLEASYSVFAQLSQLNLTKYL 301


>gi|114569243|ref|YP_755923.1| flagellin [Maricaulis maris MCS10]
 gi|114339705|gb|ABI64985.1| flagellin, putative [Maricaulis maris MCS10]
          Length = 304

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 106/354 (29%), Gaps = 52/354 (14%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T +ST +  +   +   +  K      +++ TG+ +     +G +  ++           
Sbjct: 2   TRVSTFAANQSALMDLMKAQKAVFDAQKQLTTGKLATDLKGVGHQAETLSATRAALQRAD 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +      RL +    +  M   + D+   +         +         +R+++ +
Sbjct: 62  AYEEAAIRTEARLESQDVAMGRMADAITDLRLAVT--------SKDGDYTMHQVREAFNA 113

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
                N    G Y+F G  +   P++     D +A  S  +        N +        
Sbjct: 114 IANSLNTQHAGTYVFGGTRTDTPPVSTNDLNDLVAMGSASEAFV----NNDRRPQVQLDQ 169

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            ++       +D   ++ D F                    RI      D  A  N    
Sbjct: 170 NLTIETGMLASDVGGEVFDSF-------------------KRI-----ADFDAGANGPFG 205

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           R +                  A+       +  V   L  I  +    G ++ N+   + 
Sbjct: 206 RPL----------------SAAQETFLNGEIQNVITALDNIYTKIGENGAAQANVETVKN 249

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   +   +S    V+   A  +       +++S    + L ++S+LN+L
Sbjct: 250 SHSDRQVFLQQMLSDLEDVDMAEAATRFQAAQTALDVSAKTFSSLSQVSLLNFL 303


>gi|77165831|ref|YP_344356.1| flagellin-like [Nitrosococcus oceani ATCC 19707]
 gi|254433202|ref|ZP_05046710.1| flagellar hook-associated protein 3 [Nitrosococcus oceani AFC27]
 gi|76884145|gb|ABA58826.1| Flagellin-like protein [Nitrosococcus oceani ATCC 19707]
 gi|207089535|gb|EDZ66806.1| flagellar hook-associated protein 3 [Nitrosococcus oceani AFC27]
          Length = 400

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 132/398 (33%), Gaps = 46/398 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS   ++             K  +++ +G+              +LE  +     A+ 
Sbjct: 3   ISTSLFQQQSIDGMLRQQAQVSKTQQQIASGERMQTPADDPIAAARLLEVREASGRTAQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    T RLS  +  L+ +  ++Q +    V    G  +N    I A  +R      V
Sbjct: 63  QTNADRATARLSQEENALAGVNNVLQGVRELAVQANNGAQNNENRAIIAQEVRQRLNELV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL----------NGYFTKDSLAKKSFDQMLQGFLEENS 174
             AN  D  G+YLF+G     +P                +      S          E  
Sbjct: 123 GLANSQDASGEYLFAGAKGRSQPFIQEGGSVSYQGDQAQRLISIGPSVQVADSHSGSEVF 182

Query: 175 KSLLAGQHLEVSSMNAQQMTDFIKQL--EDKFSDDEYWANNWSNAS-DHNIKYRIKDTEG 231
            ++  G  +  +  N       +      +     + +   +S A+ D  + Y++ D++ 
Sbjct: 183 LAIREGNGVFATEANPSNTGSGVIAPGSVNGAFIPDNYTLQFSQATPDDPLTYQVLDSQN 242

Query: 232 IDV----------------------------SANVNMRGIRDIMFVAVIGTEFLSKNLTD 263
             V                            S  ++    RD+  +A    E L + + D
Sbjct: 243 TVVANGGFASGEEITFGGAQVSITGIPADGDSFTLHASAHRDMFTIAQHFIEALERPIND 302

Query: 264 GARNVLT----KKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
            A          + L+ + Q +  I+E R  +G     ++ ER   +  +  +    S  
Sbjct: 303 TASQARFHNDMNRALTDLDQAMGKILEVRTEVGTRLNAVDRERQVNEEASLQLAREQSSL 362

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   A  +L+  +  +E +     +LQ LS+ N+L
Sbjct: 363 NDLDLAEAIGRLNQQLTGLEAAQRTYARLQGLSLFNFL 400


>gi|144900939|emb|CAM77803.1| flagellin and hook associated protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 300

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 96/352 (27%), Gaps = 55/352 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S++ + + +      +     +      +G  S+    LGA    ++  E     +  R
Sbjct: 4   VSSAGLGQALLRSAMTVQAKLAEKQSANASGLKSETYAGLGADAARLMTMENALAGLQAR 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      R  T    +  M  ++  M   L  L    TD   +     +  D      
Sbjct: 64  SSTTQSALDRTETMHQAVGDMTDLLSSMRTTLSQLSSQSTDQVDYN---QIGADMLTDLA 120

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N   +G+YLF+G  ++ +P++             D                      
Sbjct: 121 ALMNTQADGRYLFAGGATTTQPVDTTLLATPTNPSVADDSY------------------- 161

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                                            D     ++ D   I+        G   
Sbjct: 162 -----------------------------YLGDDVTQSVKVSDQSSIEYGVTAGETGFEK 192

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
            +  A I          + +      +      + +  ++  +  L ++   +       
Sbjct: 193 ALRAANILANLDPATPDEDS----ISEAYDLATEAMDQLLAVQGRLSVNAGRLENALSQQ 248

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +++   I  + GV+      ++S     +E SY    KL  L + ++L
Sbjct: 249 DTGISLLSERIGDAKGVDVAQVTVEISQYQTTLEASYAALGKLNSLKLTDFL 300


>gi|209545590|ref|YP_002277819.1| flagellar hook-associated protein FlgL [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533267|gb|ACI53204.1| putative flagellar hook-associated protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 358

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 132/336 (39%), Gaps = 1/336 (0%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
           + ++   +  E  T   S+    LG   ++ +    +   +A    + +     LS    
Sbjct: 24  MTQEQQTISWETSTDTLSETYAGLGQARSAAISLAPQITQVAAWQTNVTNAQNSLSVQAD 83

Query: 82  HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141
            L+ +  + Q +   L+ +  G T ++     AG    +     T  N +D   Y+F+G 
Sbjct: 84  ALTQIVSLAQSLSTSLIGV-TGTTTDSAVTATAGEATTALSELATVLNTSDGSGYVFAGK 142

Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201
           +S+E P+    +  S    +    +   L  +  S +  Q    ++ N    + F  QL 
Sbjct: 143 DSTEPPIEDTASVTSGTLATQIASIVSSLGSSDASTVIEQATTAAADNTAGTSVFSSQLS 202

Query: 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
                      +    S+ + +  I  T+G   S       IRD+M   +I +     + 
Sbjct: 203 VSGDAATALQKSVVTGSNTSTEVGIVATQGTAASLTSTGSPIRDLMRDMMIVSGTSGMSS 262

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
           T    + L  ++ S++Q  +S + +  + +G ++ N+      L + N  +   +  +  
Sbjct: 263 TTSGYSDLVSQVYSSLQTTISQLTDMESSVGTTQDNLTANATLLTSMNTALTGQLGDARD 322

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +      Q S+L   ++ SYM+ + ++ L++ NY+
Sbjct: 323 ADLAAVAVQSSSLDTSLKASYMLVSDMKSLTLANYI 358


>gi|162147481|ref|YP_001601942.1| flagellar hook-associated protein FlgL [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786058|emb|CAP55640.1| putative flagellar hook-associated protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 358

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 132/336 (39%), Gaps = 1/336 (0%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
           + ++   +  E  T   S+    LG   ++ +    +   +A    + +     LS    
Sbjct: 24  MTQEQQTIAWETSTDTLSETYAGLGQARSAAISLAPQITQVAAWQTNVTNAQNSLSVQAD 83

Query: 82  HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141
            L+ +  + Q +   L+ +  G T ++     AG    +     T  N +D   Y+F+G 
Sbjct: 84  ALTQIVSLAQSLSTSLIGV-TGTTTDSAVTATAGEATTALSELATVLNTSDGSGYVFAGK 142

Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201
           +S+E P+    +  S    +    +   L  +  S +  Q    ++ N    + F  QL 
Sbjct: 143 DSTEPPIEDTASVTSGTLATQIASIVSSLGSSDASTVIEQATTAAADNTAGTSVFSSQLS 202

Query: 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
                      +    S+ + +  I  T+G   S       IRD+M   +I +     + 
Sbjct: 203 VSGDAATALQKSVVTGSNTSTEVGIVATQGTAASLTSTGSPIRDLMRDMMIVSGTSGMSS 262

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
           T    + L  ++ S++Q  +S + +  + +G ++ N+      L + N  +   +  +  
Sbjct: 263 TTSGYSDLVSQVYSSLQTTISQLTDMESSVGTTQDNLTANATLLTSMNTALTGQLGDARD 322

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +      Q S+L   ++ SYM+ + ++ L++ NY+
Sbjct: 323 ADLAAVAVQSSSLDTSLKASYMLVSDMKSLTLANYI 358


>gi|253681497|ref|ZP_04862294.1| flagellar hook-associated protein 3 [Clostridium botulinum D str.
           1873]
 gi|253561209|gb|EES90661.1| flagellar hook-associated protein 3 [Clostridium botulinum D str.
           1873]
          Length = 345

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 117/352 (33%), Gaps = 10/352 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++   +        +   ++  K+ ++  +G+           V   ++   + N   + 
Sbjct: 3   VTNKMLSNNFLADMRANLENVNKIQQQNTSGKKFRKPSDDPFAVARSMQLHTDINTNKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + V+  L T+   L     ++Q +   L+    G    ++       + +      
Sbjct: 63  SKNITDVSNWLDTTDTALGQAGNVLQRVRELLITSGNGGYTKSERRAIKDEINEKIGEMS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N    G Y+F G  S+ KP++     D     +       ++ ++ +        + 
Sbjct: 123 QILNTNFSGNYIFGGTRSTTKPMDVSKNDDGNVSLN-------YISKDGRQYNIDNSKKP 175

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
             + A     F K L +   +          +    + Y +  T+ ++           +
Sbjct: 176 IQIEAVDKKPFDKTLVEDEYNQVTSRLKVEVSQGVTMDYNVTATDVLEFKNEAGDSI--N 233

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
           +M +    T  L           L  + L+ V   +S +++ RA +G  +  I       
Sbjct: 234 LMNLFKDITTHLDSEDPKEINK-LIGEDLTKVSDTISNLLKIRAEVGAKQNRIEGAEDRN 292

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++    +   +SK   V         +T++     S   + K+ + S+++YL
Sbjct: 293 KDGTFNMTKILSKHEDVNYTENMTNYATMLTVYMASLQTSAKIIQPSLMDYL 344


>gi|254698187|ref|ZP_05160015.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 102

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 48/100 (48%)

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
              L   A + LT + L    Q ++    ++  LG+++         +  +  I++  + 
Sbjct: 2   DIGLNASAFDALTTQALQITTQAVTETTSEQTTLGLAQSRTEAATTRIAAQQKILNQSVL 61

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               V+ + A  +++ L  +IE SY +T +LQ +S+LNYL
Sbjct: 62  NLEEVDPYDAATRVNALKTQIETSYSLTVQLQNMSLLNYL 101


>gi|328545571|ref|YP_004305680.1| flagellin and hook associated protein [polymorphum gilvum
           SL003B-26A1]
 gi|326415312|gb|ADZ72375.1| Flagellin and hook associated protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 298

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 105/352 (29%), Gaps = 59/352 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T S  E +     +      +   +  +G+ +     LG    +++  E         
Sbjct: 5   VATFSHAESLLQHAMQTQARLAQKQIQQASGEIASSYAGLGTGGEALVSLEVAATRAGSY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           L S      R+    + + +M      ++  +   + G    ++      +     E   
Sbjct: 65  LSSAQTTLDRVEMMYSAVGAMSD----LLTRMRAEVAGTMTVDQISDLQSVAAGLLEDMA 120

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
           +  N   EG+YLF+G  +   P+                             +   +   
Sbjct: 121 SQLNTQFEGRYLFAGSLTGSAPV-----------------------------VLDGYQAT 151

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           S   A                       +    D     RI  T  +D     +      
Sbjct: 152 SLATAD--------------------AGYYQGDDLLQSARIGATRVLDYGVTGDATAFET 191

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
            + V          +L +        ++ + + +   GII  ++ L      +       
Sbjct: 192 ALRVLSYVATADPLDLDE------LSEVAALLVEAQDGIIALQSGLATKAATLEATIEAE 245

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 ++  IS   GV+     A+++TL  +++ SY    KL  +S+L+YL
Sbjct: 246 STYIATLEEMISARKGVDAVVVAAEIATLETQLQASYAAIGKLSSMSLLDYL 297


>gi|268317788|ref|YP_003291507.1| flagellar hook-associated protein 3 [Rhodothermus marinus DSM 4252]
 gi|262335322|gb|ACY49119.1| flagellar hook-associated protein 3 [Rhodothermus marinus DSM 4252]
          Length = 310

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 106/340 (31%), Gaps = 53/340 (15%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
             +E   +  +L E+M TG+  +         T      +      +   + ++    L+
Sbjct: 22  QIQERRLELARLQEQMATGRRVNRPSDDPGTYTRSQALRRLAQRYDQHERTLTIGRAWLT 81

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
            ++  LS++  +        V +             A +L    ++ +   N    G+YL
Sbjct: 82  ATEDALSTLVDLFNSAYEEGVRMATDTASTADRATTADVLEQRLQAVLDQLNARHNGEYL 141

Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
           F+G  ++ +P                + L+          L G  +     N   +TDF 
Sbjct: 142 FAGTRTTMQPFQLSGGTVVYNGNDQTRQLEIAPGLQIAVNLTGNDVWEVDENGDGVTDF- 200

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                  +  E W +                                       +     
Sbjct: 201 -------TITEAWQD---------------------------------------LIDALR 214

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
           + +          +  ++ V+     ++++ A +G + + ++     LQ+    +++  S
Sbjct: 215 ADDTAQ------IQNAMARVETARDHLLDRIAQVGETSRRLSMAETELQDARLRLESQRS 268

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                +      +L      +E +  +T++L + S+LNYL
Sbjct: 269 DLEDADFAEIAVKLQRHQLSLEATLQVTSRLLQTSLLNYL 308


>gi|300114792|ref|YP_003761367.1| flagellar hook-associated protein 3 [Nitrosococcus watsonii C-113]
 gi|299540729|gb|ADJ29046.1| flagellar hook-associated protein 3 [Nitrosococcus watsonii C-113]
          Length = 400

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/398 (16%), Positives = 125/398 (31%), Gaps = 46/398 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS   ++             K   ++ +G+              +LE  +     A+ 
Sbjct: 3   ISTSLFQQQSIEGMLRQQTQVSKTQRQIASGERMQTPADDPVAAARLLEVREASGRTAQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +  L T RLS  +  L+ +  ++Q +    V    G  +N    I A  +R      V
Sbjct: 63  QTNADLATARLSQEENALAGVNNVLQGVRELAVQANNGAQNNENRAIIAQEVRQRLNELV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL----------NGYFTKDSLAKKSFDQMLQGFLEENS 174
             AN  D  G+YLF+G     +P                +      S          E  
Sbjct: 123 GLANSQDASGEYLFAGAKGRTQPFIQAGGGVSYQGDQAQRLISIGPSAQVADSHSGSEVF 182

Query: 175 KSLLAGQHLEVSSMNAQQMTDFIKQL--EDKFSDDEYWANNWSNAS-DHNIKYRI----- 226
            ++  G  +  +  N       +      +       +   +S A+ D  + Y++     
Sbjct: 183 LAIREGNGVFATEANPVNRGSGVIAPGSANGAFIPGNYTLQFSQATPDDPLTYQVLDSQH 242

Query: 227 ----------------KDTEGIDVSANVNMRGI-------RDIMFVAVIGTEFLSKNLTD 263
                              +        +           RD+  +A    E L + + D
Sbjct: 243 TVVANGDFASGEEIAFGGAQASITGVPADGDSFTLRASAHRDMFTIAQHFIEALERPIND 302

Query: 264 GARNVLT----KKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
                       K L+ + Q +  ++E RA  G     ++ ER   +  +  +    S  
Sbjct: 303 TTSQARFHNDMNKTLTDLDQAMGKVLEVRAETGARLNAVDRERQVNEETSLQLAREQSSL 362

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   A  +L+  +  +E +     +LQ LS+ N+L
Sbjct: 363 NDLDLAEAIGRLNQQLTGLEAAQRTYARLQGLSLFNFL 400


>gi|118443899|ref|YP_877946.1| flagellar hook-associated protein 3 [Clostridium novyi NT]
 gi|118134355|gb|ABK61399.1| flagellar hook-associated protein 3, putative [Clostridium novyi
           NT]
          Length = 325

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 120/353 (33%), Gaps = 32/353 (9%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++   +        K   ++  K+ ++  +G+           V   ++   + N   + 
Sbjct: 3   VTNKMLSNNFLADMKTNLENINKIQQQNTSGKKFRKPSDDPFAVARSMQLHTDINTNKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + V+  L T+   L     ++Q +   L+    G    ++       + +      
Sbjct: 63  SKNITDVSNWLDTTDTALGQAGNVLQRVRELLISSGNGGYTKSERRAIKDEINEKIGEMS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N    G Y+F G  S+ KP+                      + N  ++L     E 
Sbjct: 123 QILNTNFGGNYIFGGSRSTTKPME-------------------VDKANGNTILIYNKKEG 163

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM-RGIR 244
             ++  +  D   Q+  K   +              + Y +  T+ ++        + +R
Sbjct: 164 GKLDKTKDQDEYTQIASKLKIEVS--------QGVTMDYNVTATDVLEFKNEAGAPKDLR 215

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           DI  ++ I +   S+       N L  + L+ +   +S +++ RA +G  +  I      
Sbjct: 216 DI--LSKITSHLDSEK--PEEINKLIGQDLTNITDAISNVLKIRAEIGAKQNRIEGANDR 271

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++    +   +SK   V         +T++     S   + K+ + S+++YL
Sbjct: 272 NKDATFNMTKILSKHEDVNYTENMTDYATMLTVYMASLQTSAKIIQPSLMDYL 324


>gi|39933726|ref|NP_946002.1| flagellar hook-associated protein FlgL [Rhodopseudomonas palustris
           CGA009]
 gi|39647573|emb|CAE26093.1| possible flagellin and hook associated protein [Rhodopseudomonas
           palustris CGA009]
          Length = 303

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 101/357 (28%), Gaps = 55/357 (15%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    ++T +   +M      +     +L  +   G  S+     GA    ++  +    
Sbjct: 1   MTVMRVATFAQSGQMIADALRVQSRMAELQIQEAAGVKSESFAGYGADAQHVVNLQVGVT 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                + + +L   ++    +   S+  IV  +   L     G T      I     +  
Sbjct: 61  RAQSYIDAATLAGGKVQVMYSAAGSIADIVTQLRSQLSAASTGSTTEATSAI--SSAQQM 118

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +   +  N   +GQY+F+G  +S  P++      S    +                   
Sbjct: 119 LQQVGSLLNTQYDGQYVFAGSKTSTPPVDLSSFASSAGSTTTAD---------------- 162

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                                           ++    D     R+   + +    N + 
Sbjct: 163 -------------------------------TSYYVGDDATTSVRVSADQSVAYGVNADN 191

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                +M V        S + +  A        L      L      +  LG +   I  
Sbjct: 192 SAFEQVMRVLRYVANSSSLSSSQIA------TALDLASSALDATASVQERLGNAASAIEN 245

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 +  +   T  S    V+     A+LST  +++  SY    K+  L++ +YL
Sbjct: 246 ASARQSDYKSFASTLASDLTSVDVAAVTAELSTYQSQLTASYSAIGKIFSLNLASYL 302


>gi|83859395|ref|ZP_00952916.1| flagellin, putative [Oceanicaulis alexandrii HTCC2633]
 gi|83852842|gb|EAP90695.1| flagellin, putative [Oceanicaulis alexandrii HTCC2633]
          Length = 303

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 111/358 (31%), Gaps = 63/358 (17%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST +  +          +++    +++ +G+ +           +I+  +  +      
Sbjct: 3   ISTQAASQAALSDLMRAQREAYDARQQLASGKKAPDLKGYANSAETIIAAKAAQKRSESF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +N  V  RL         +     D+   L          N        +++ ++   
Sbjct: 63  VGANERVLNRLEIQDLAYQELSTAATDLRTALTT--------NDGSFMMDKVQEVFDRAS 114

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              NM   G ++F G  +   P                         ++ + L     +V
Sbjct: 115 AALNMRFNGSFVFGGRRTDAVPFT----------------------ADTIADLQAAVPDV 152

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           S                           + NA+D      I++T  IDV+A  +  G  +
Sbjct: 153 S-------------------------ATFQNAADRQTTK-IEETITIDVNATASEVGT-E 185

Query: 246 IMFVAVIGTEFLSKNLT------DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
           +M       +F +             +    +  L+ +      I    A  G  +K + 
Sbjct: 186 LMASIERIADFNAGPDGPFDGQITENQQAFLETELANIISAFDTINVAMAENGARQKQLE 245

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 + +++ ++  ++     +   A  +       +++S    ++L ++S+LNYL
Sbjct: 246 GSITGHEKRSDYLEIMVAGIEDADMAEAATRFQQAQTAVQVSAQTFSRLSQISLLNYL 303


>gi|192289146|ref|YP_001989751.1| flagellar hook-associated protein FlgL [Rhodopseudomonas palustris
           TIE-1]
 gi|192282895|gb|ACE99275.1| flagellar hook-associated protein FlgL [Rhodopseudomonas palustris
           TIE-1]
          Length = 303

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 100/357 (28%), Gaps = 55/357 (15%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    ++T +   +M      +     +L  +   G  S+     G     ++  +    
Sbjct: 1   MTVMRVATFAQSGQMIADALRVQSRMAELQIQEAAGVKSESFAGYGTDAQHVVNLQVGVT 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                + + +L   ++    +   S+  IV  +   L     G T      I     +  
Sbjct: 61  RAQSYIDAATLAGGKVQVMYSAAGSIADIVTQLRSQLSAASTGSTTEATSAI--SSAQQM 118

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +   +  N   +GQY+F+G  +S  P++      S    +                   
Sbjct: 119 LQQVGSLLNTQYDGQYVFAGSKTSTPPVDLSSFASSAGSTTTAD---------------- 162

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                                           ++    D     R+   + +    N + 
Sbjct: 163 -------------------------------TSYYVGDDATTSVRVSADQSVAYGVNADN 191

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                +M V        S + +  A        L      L      +  LG +   I  
Sbjct: 192 SAFEQVMRVLRYVANSSSLSSSQIA------TALDLASSALDATASVQERLGNAASAIEN 245

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 +  +   T  S    V+     A+LST  +++  SY    K+  L++ +YL
Sbjct: 246 ASARQSDYKSFASTLASDLTSVDVAAVTAELSTYQSQLTASYSAIGKIFSLNLASYL 302


>gi|148254604|ref|YP_001239189.1| flagellar hook-associated protein FlgL [Bradyrhizobium sp. BTAi1]
 gi|146406777|gb|ABQ35283.1| putative flagellar hook-associated protein 3 (HAP3, flgL protein)
           (Hook-filament junction protein) [Bradyrhizobium sp.
           BTAi1]
          Length = 302

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 101/356 (28%), Gaps = 55/356 (15%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  ++T +  ++M             +  +  +G  ++Y    GA    ++  +     
Sbjct: 1   MTMRVATFANSDQMISSALRTQATMADMQVQEASGLKTEYLAGYGADTQHVVNLQVSVTR 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
               + + +L   ++    + +  +  IV  +   L     G +      I     +   
Sbjct: 61  AQSYIDAATLADSKVQVMYSAVGQVSDIVSQLRSALSAASSGSSTGTTSAI--SSAQQLL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           +      N   +GQYLF G  +S   ++           +                    
Sbjct: 119 QQMAGILNTQYDGQYLFGGARTSTAAVDTSTFASGAGSLATPD----------------- 161

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                                          ++    D     R+     +      +  
Sbjct: 162 ------------------------------TSYYKGDDELASARVSGGAAVTYGVTADNS 191

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
              ++M V            +    +      L+   Q +  +   +A L  +   I   
Sbjct: 192 AFEEVMRVLKFVAN------SSTLSSTDISSALTLADQAVDDVATVQAKLSDAASRIESA 245

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    +  +  ++  +    V+     AQLST   ++  SY   +K+Q L++ +YL
Sbjct: 246 KSEQTDFKSYAESLATDLTSVDVAAVTAQLSTYQAQLTASYTAISKIQSLNLASYL 301


>gi|115522798|ref|YP_779709.1| flagellar hook-associated protein FlgL [Rhodopseudomonas palustris
           BisA53]
 gi|115516745|gb|ABJ04729.1| putative flagellar hook-associated protein 3 FlgL [Rhodopseudomonas
           palustris BisA53]
          Length = 303

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/352 (11%), Positives = 99/352 (28%), Gaps = 54/352 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T +  ++M            +   +  +G  S      G++   I+  +   +     
Sbjct: 5   VATFANSQQMIAAALRTQASMAEQQMQEASGVISTDFGGYGSKAQQIINLQVSVDRAQSY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + + + +  ++    + ++S+  ++ +    L       + ++          D  +   
Sbjct: 65  IDTATQIGSKIEVMYSAVNSVADLLAEFRSLLTAASNSASTDST--SIQQSAADMLQQMA 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N    G+YLF G  +  +P++   T                                
Sbjct: 123 ALLNTQYGGKYLFGGARTDTRPVDVSTTA------------------------------- 151

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                              +     + ++    D     R+ DT+ +      +      
Sbjct: 152 ---------------YPAMTSPSSASTSYYQGDDELAAARVSDTQSVSYGVTADNTAFEQ 196

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
            M    +                   + L+     +       + +  +   I     F 
Sbjct: 197 AMRAMNLVAN------ASTLSATALDEALNLAIDAVDATGIVLSRISNAAAAIERASAFQ 250

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +T  S   GV+     A L+T   ++  SY    K+Q L++ +YL
Sbjct: 251 TEYKSFAETLGSDLTGVDVAAVTASLATYQAQLTASYSAIAKVQSLNLASYL 302


>gi|27378815|ref|NP_770344.1| flagellar hook-associated protein FlgL [Bradyrhizobium japonicum
           USDA 110]
 gi|27351964|dbj|BAC48969.1| blr3704 [Bradyrhizobium japonicum USDA 110]
          Length = 302

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 102/352 (28%), Gaps = 55/352 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T +    M      +         +  +GQ S      G+    ++  +         
Sbjct: 5   VATFAQTNTMISDALRIQSVMANEQIQESSGQISSDFGGYGSTAQHVVNLQVSVTRAQSY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + + +L   R+    + + SM  +V  +   L     G +      I     +   E   
Sbjct: 65  VDAATLADSRVQVMYSAVGSMTDMVTQLRSQLSAASTGSSTEANSAIA--TAQQYLEQMG 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
           +  N   +GQY+F+G  +   P+                                     
Sbjct: 123 SLLNTQYDGQYVFAGGKTETAPV------------------------------------- 145

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                  +T F        + D     ++ +        R+   + +      +     +
Sbjct: 146 ------DITSFATGTGSAATAD----TSYYSGDGEIASVRVSADQAVSYGVTADNSAFEE 195

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
           +M V            +    +    + L      L   +  +A L  +   I       
Sbjct: 196 VMRVLKFVAN------STSLSSSDITQALDLASTALDDTVAVQARLSGAASQIETASTRQ 249

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  +  +T  S   GV+     AQLST  +++  SY    K+  +++ +YL
Sbjct: 250 SDYKSFAETLSSDLTGVDVAAITAQLSTYQSQLTASYSALGKILSMNLASYL 301


>gi|90422394|ref|YP_530764.1| flagellar hook-associated protein FlgL [Rhodopseudomonas palustris
           BisB18]
 gi|90104408|gb|ABD86445.1| putative flagellar hook-associated protein 3 FlgL [Rhodopseudomonas
           palustris BisB18]
          Length = 303

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 101/352 (28%), Gaps = 54/352 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+T    E+M             +  +  +G +S      G+    IL  +         
Sbjct: 5   IATFGNSEQMIAAALRTQSTMANMQIQEASGITSSDFGGYGSSSQQILNLQVSVTRAQSY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +++  + ++    + +SS+  ++      L       +        +   +D  E   
Sbjct: 65  IDASTQASSKVEVMYSAMSSISDLITQFRSLLTGATS--STTTDATSVSQSAQDMLEQMA 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
           +  N    G Y+F G  + + P+                                     
Sbjct: 123 SLLNTQYGGDYVFGGARTDQAPV------------------------------------- 145

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                    D    +    +       ++    D     R+ +++ +      +      
Sbjct: 146 ---------DIDSTVYAAMTSPSSADTSYYKGDDELASVRVSESQIVSYGVTADNAAFEK 196

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
            M    +     S  L+    N    + L   +  +  +   ++ +  +   I     F 
Sbjct: 197 AMRAMNLVAN--STTLSTDTLN----EALDLAETAVDAVGVVQSRVSNAASAIERASSFQ 250

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +   +  +    V+     AQLST   ++  SY    K+Q L++ +YL
Sbjct: 251 TEYQSYAQSLATDLTSVDVAAVTAQLSTYQAQLTASYAAIAKVQSLNLASYL 302


>gi|146341763|ref|YP_001206811.1| flagellar hook-associated protein FlgL [Bradyrhizobium sp. ORS278]
 gi|146194569|emb|CAL78594.1| putative flagellar hook-associated protein 3 (HAP3, flgL protein)
           (Hook-filament junction protein) [Bradyrhizobium sp.
           ORS278]
          Length = 302

 Score = 82.1 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 97/352 (27%), Gaps = 55/352 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+T +  ++M             L  +  +G  S+Y    GA    I+  +         
Sbjct: 5   IATFANSDQMITNALRTQATMATLQVQEASGLKSEYLADFGADTQHIVNLQVSVTRAQSY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + + +L   ++    + +  +  IV  +   L     G +      I     +   E   
Sbjct: 65  IDAATLADSKVQVMYSAVGQVSDIVSQLRTALSAASSGTSTGTTSAI--SSAQQLLEQMA 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N   +GQY+F G  +    ++           S                        
Sbjct: 123 GILNTQYDGQYVFGGAWTLTAAVDTSSFATGTGSLSTVD--------------------- 161

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                                      ++          R+ D + +      +      
Sbjct: 162 --------------------------TSYYQGDSELASVRVSDGQSVTYGVTADNSAFEK 195

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
           +M V            +           L    Q +  +   ++ L  S   I   +   
Sbjct: 196 VMRVLKFVAN------SSSLSASDLSSALDLADQAVDDVATVQSNLSDSASRIESAKSQQ 249

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  +  ++  +    V+     AQLST   ++  SY   +K+Q L++ +YL
Sbjct: 250 TDFKSYAESLATDLTSVDVAAVTAQLSTYQAQLTASYSAISKIQSLNLASYL 301


>gi|254519435|ref|ZP_05131491.1| flagellar hook-associated protein 3 [Clostridium sp. 7_2_43FAA]
 gi|226913184|gb|EEH98385.1| flagellar hook-associated protein 3 [Clostridium sp. 7_2_43FAA]
          Length = 331

 Score = 81.7 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/361 (11%), Positives = 122/361 (33%), Gaps = 42/361 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   + +              KL++++ +G+          +V   ++  ++     + 
Sbjct: 3   ITNQMMSKSFLRDLGRNQGYMKKLNDQLTSGKEIRRPSDNPFKVARSMQLHRDIGANTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    T  L T+   L  +    Q     +V        +++       + +      
Sbjct: 63  NENIKDTTNWLDTTDTALEQLGNSFQRFRELMVSAGNAAYGSDEKKAIKDEMNEKVNEIA 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N + +G+Y+F G   + KP+                  +  +  N+   L+G   EV
Sbjct: 123 QILNSSFDGKYIFGGTKGNTKPIG---------------TNKDIVTGNNSIHLSGNDGEV 167

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV------- 238
             +    + + ++                    +  +   +     +D +          
Sbjct: 168 LEL--DNLDESVQNQIGMI--------------NKKLTVEVSQGVTMDYNVCATDLLLFK 211

Query: 239 --NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEK 296
             N   +  +  +  I     S++ +   +  +T + L T+ + ++ +++ RA +G  + 
Sbjct: 212 DKNGSDVNVMGLLKEITDNIGSEDASVSGK--VTNENLKTMDETIANLLKIRAEVGAKQN 269

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
            +       + +N  +   +S++  ++    + + +   +    S  ++ K+ + S+L++
Sbjct: 270 RMESAGDQNEEQNFNLKDILSQTEDIDFAEKNIEATVAQSVYMASLQVSAKIIQPSLLDF 329

Query: 357 L 357
           L
Sbjct: 330 L 330


>gi|260762634|ref|ZP_05874966.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260673055|gb|EEX59876.1| flagellar hook-associated protein FlgL [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 85

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 42/84 (50%)

Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
           +    Q ++    ++  LG+++         +  +  I++  +     V+ + A  +++ 
Sbjct: 1   MQITTQAVTETTSEQTTLGLAQSRTEAATTRIAAQQKILNQSVLNLEEVDPYDAATRVNA 60

Query: 334 LINKIEMSYMITTKLQKLSILNYL 357
           L  +IE SY +T +LQ +S+LNYL
Sbjct: 61  LKTQIETSYSLTVQLQNMSLLNYL 84


>gi|295687867|ref|YP_003591560.1| flagellar hook-associated protein FlgL [Caulobacter segnis ATCC
           21756]
 gi|295429770|gb|ADG08942.1| flagellar hook-associated protein FlgL [Caulobacter segnis ATCC
           21756]
          Length = 299

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 95/356 (26%), Gaps = 58/356 (16%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
             T I T +    +   +            +  TG  S     LG  V S+L    +   
Sbjct: 1   MITRIGTFAHSNALIAASLRTQAKLADQQTQESTGLKSTSFGGLGTDVASLLRMSSQSTR 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           +     +    +  + ++ A +  +  +   +   L   + G + +      A   R   
Sbjct: 61  LTADNGAAQTASAYVQSAYAAVGDIADLANTIKSQLAAQISGTSLDG--DSLAAYARGWL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           +   T  N    G YLF G      P++                 QG     + + + G 
Sbjct: 119 DDLQTQLNSQVGGVYLFGGEAVDAAPVDFSSADYDPTAVGNTGYYQGASTTRTFASVDGS 178

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                                                             I +S      
Sbjct: 179 K-------------------------------------------------ISLSITAQAG 189

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
           G   +     +       + T  A           V + +SG+   +  LG+    ++  
Sbjct: 190 GFEQLARALSMVIADPGDSDTLSA-------AFDLVGEAVSGVGAVQEGLGVQASQLSSL 242

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               + K + +D   S+  G +   A   ++    ++E  Y     L   S+L YL
Sbjct: 243 ISRNETKIDTLDDLASQLKGADLAQAAVLVTNYQTQLEALYSTIGTLSSSSLLKYL 298


>gi|209967002|ref|YP_002299917.1| flagellar hook-associated protein 3 FlgL, putative [Rhodospirillum
           centenum SW]
 gi|209960468|gb|ACJ01105.1| flagellar hook-associated protein 3 FlgL, putative [Rhodospirillum
           centenum SW]
          Length = 492

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 65/200 (32%), Gaps = 6/200 (3%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           + I+T + + R+   T  + +    L  ++ TG  +D    LG      +   +  + I 
Sbjct: 2   SSIATLTQYTRILRDTGLVKQQETDLQRQLSTGYKTDVYSGLGIDAARSVNLRETASRIT 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  LV  R       +  +  +V  ++  L  L    T  +   +     R + + 
Sbjct: 62  SYQRNIDLVQARTEVLDTAMQRVGSLVTSVISDLNKL--DGTTISDPTVVRDNARQALDQ 119

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             +  N   EG+Y+F+  + +  P+N           ++D+    +L   + +       
Sbjct: 120 IYSLLNTQVEGRYVFAASDETTPPVNDLT----GLIDTYDRFYTAYLNAPAGAATRLDFD 175

Query: 184 EVSSMNAQQMTDFIKQLEDK 203
              +                
Sbjct: 176 GDGTTIGDADDALATGPTPA 195



 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 4/142 (2%)

Query: 219 DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF---LSKNLTDGARNVLTKKMLS 275
           +  +  R+ D   +      +    R+I+    +           +     + L      
Sbjct: 351 NAPMVARVDDNLDVTYGVRADASYFRNIIQGLAMVANLERPDDPEIRSRYYDALHS-ARD 409

Query: 276 TVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLI 335
            +Q G   +    A +G   +N+++  V  +    I++T + +    +  T   +L+   
Sbjct: 410 MLQTGSKDLNTAVASVGAVRRNLDQLEVKHKAVLGIVNTNVGEIEEADIATVATRLNLAE 469

Query: 336 NKIEMSYMITTKLQKLSILNYL 357
            +++  Y     L K SIL+YL
Sbjct: 470 TQLQAGYRTIASLNKTSILDYL 491


>gi|292492370|ref|YP_003527809.1| flagellar hook-associated protein 3 [Nitrosococcus halophilus Nc4]
 gi|291580965|gb|ADE15422.1| flagellar hook-associated protein 3 [Nitrosococcus halophilus Nc4]
          Length = 400

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 125/401 (31%), Gaps = 52/401 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS   +R      +      K+ +++ TG+         A    +L+  +    +++ 
Sbjct: 3   ISTSLFQQRSIDGILDQQAQVSKIQQQLATGRRILTPADDPAAAARLLDVRETFEQLSQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    T RLS  +  L+ +  ++Q +    V    G  +N    + A  +R   +  +
Sbjct: 63  QRNADRATARLSQEETALAGVGDLLQRVRELAVQANNGAQNNENRVMMAKEVRQRLDEIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL-------------------------NGYFTKDSLAK 159
             AN  D  G+YLF+G     +P+                                S   
Sbjct: 123 GLANAQDASGEYLFAGFKGRTQPIIREGGNFTYQGDQGQRQIQISPSVQVADSDPGSEVF 182

Query: 160 KSFDQMLQGFLEENSKSLLAGQHLEVSSMNA-----------QQMTDFIKQLEDKFSDDE 208
            +  +    F+ E   S      +   S++             Q         +      
Sbjct: 183 LAIREGNGTFVTEADPSNSGSGVIGPGSVSGTFVPGDYTLRFSQPQSSDSLTFEVLDSQN 242

Query: 209 YWANNWSNASDHNIKY---------RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSK 259
               + +  S   I +            D +   + ++ +      +          +S 
Sbjct: 243 NVVTSGNFVSGGAITFGGAQVRVTGTPGDGDRFTIRSSAHQDMFTTVQRFIDALERPVSD 302

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE---RVFLQNKNNIIDTYI 316
             +    N    + L+ + Q L  + E RA +G     I+ E      +  +   + + +
Sbjct: 303 TASQARFNNDMNRTLTDLDQALGKVSEIRAGVGARLNAIDSERQMNEDVSLQMAKLQSSL 362

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +     +   A   L+  +  +E +     +LQ LS+ + L
Sbjct: 363 NDL---DLAEAIGHLNQQLTALEAAQRTYVRLQGLSLFSLL 400


>gi|86747895|ref|YP_484391.1| flagellar hook-associated protein FlgL [Rhodopseudomonas palustris
           HaA2]
 gi|86570923|gb|ABD05480.1| putative flagellar hook-associated protein 3 FlgL [Rhodopseudomonas
           palustris HaA2]
          Length = 303

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 105/356 (29%), Gaps = 54/356 (15%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
             T ++T +  ++M                +  +G  S     LG+    +L  +     
Sbjct: 1   MLTRVATFANTDQMVAAALRTQSTMANQQIQEASGLVSSDFGGLGSSSQQVLNLQVSVTR 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
               + + +L   ++    + ++S+  ++ +    L       + +          +   
Sbjct: 61  SQSYIDAATLANGKVEVMYSAVNSIADLITEFRTLLTSASNVASTDAA--SVTQSAQSML 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           E   +  N      YLF+G ++   P+    +    A  S       + + N        
Sbjct: 119 EQMASLLNTQYNSGYLFAGSDTKTAPV-DVSSSVYAAATSPSSADTSYYQGN-------- 169

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                                                D     R+ D++ +      +  
Sbjct: 170 -------------------------------------DDLASVRVSDSQTVSYGVTADSA 192

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
               +M    +     +  L+    N    + L      +  I   +  L  +  +I + 
Sbjct: 193 AFEQVMRAMNLVAN--NSPLSTETLN----EALDLAVGAIDSIGVIQTKLSNAASSIAKA 246

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +     +  +T  S   GV+     A+LST   ++  SY    K+Q L++ +YL
Sbjct: 247 SSYQSEYQSYAETLGSDLTGVDVAAVTAKLSTYEAQLTASYSAIAKVQGLNLASYL 302


>gi|168187527|ref|ZP_02622162.1| flagellar hook-associated protein 3 [Clostridium botulinum C str.
           Eklund]
 gi|169294602|gb|EDS76735.1| flagellar hook-associated protein 3 [Clostridium botulinum C str.
           Eklund]
          Length = 327

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 122/353 (34%), Gaps = 30/353 (8%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++   +        +   ++  K+ ++  +G+           V   ++   + N   + 
Sbjct: 3   VTNKMLSNNFLADMRTNLENINKIQQQNTSGKKFRKPSDDPFAVARSMQLHTDINTNKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + V+  L T+   L     ++Q +   L+    G    ++       + +      
Sbjct: 63  SKNITDVSNWLDTTDTALGQAGNVLQRVRELLISSGNGGYTKSERRAIKDEINEKIGEMS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N    G Y+FSG  S+ KP+     K +   K                         
Sbjct: 123 QILNTNFGGNYIFSGSRSTTKPMEVEVDKTTGNTKLI----------------------- 159

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDV-SANVNMRGIR 244
              N ++  +  K ++    +          +    + Y +  T+ ++  +   + + +R
Sbjct: 160 --YNKKEGGELDKTVDKDEYNQIASKLKIEVSQGVTMDYNVTATDVLEFKNETGDDKNLR 217

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           +I  ++ I T   S++      N L  + L+ +   +S +++ RA +G  +  I      
Sbjct: 218 EI--LSNIVTHLDSED--PDEINKLIGEDLTNITDSISNVLKIRAEVGAKQNRIEGADDR 273

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++    +   +SK   V         +T++     S   + K+ + S+++YL
Sbjct: 274 NKDGTFNMTKILSKHEDVNYTENMTDYATMLTVYMASLQTSAKIIQPSLMDYL 326


>gi|23099961|ref|NP_693427.1| flagellar hook-associated protein FlgL [Oceanobacillus iheyensis
           HTE831]
 gi|22778192|dbj|BAC14462.1| flagellar-hook associated protein 3 [Oceanobacillus iheyensis
           HTE831]
          Length = 293

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 105/352 (29%), Gaps = 62/352 (17%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ S +   M       N    K  E++ TG+               + +  E   + + 
Sbjct: 3   VTQSMLSNNMLRNLTNSNAQMNKYMEQLYTGKKITKPSDDPVVAMKGIGYRSELVRVEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S V   +  S + L      +Q +    V    G    ++         +      
Sbjct: 63  QRNTSEVNNWMDNSDSALDQATSAMQRLRELAVKANNGTNSEDELQSILQEANELKGHLT 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             AN    G+Y+F+G N+   P+      +   +         F + +    ++      
Sbjct: 123 DIANTNVNGKYIFNGTNTDTPPVTVDEDGNITTE---------FQDSDVVIEVSAGTKIK 173

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           ++++  +         D F+  + + +N            ++  E +D S          
Sbjct: 174 ANVDGGEA---FGGDPDLFTAVDNFIDN------------LESGENLDES---------- 208

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
                                       +  +  G++ II  RA LG     +      L
Sbjct: 209 ----------------------------IGELDTGINQIINSRAELGARMNRLELIENRL 240

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  +    +S +   +      +L T  +    +    +++ + S+L++L
Sbjct: 241 SEQEIVATQTMSDNEDADYAETITKLITQESLHRAALSAGSRIIQPSLLDFL 292


>gi|220934401|ref|YP_002513300.1| flagellar hook-associated protein 3 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995711|gb|ACL72313.1| flagellar hook-associated protein 3 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 400

 Score = 79.4 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 60/399 (15%), Positives = 136/399 (34%), Gaps = 48/399 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ IF       ++  +   +   ++ TG+         +     L++        + 
Sbjct: 3   VSTTQIFRNGIGAIQDNQQGLARTQLQLGTGKRILSPSDDPSGAVQALQFRSSVEKTEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++V +RL  S+  L+S+ + +Q +    V    G   N      AG +R   +  V
Sbjct: 63  QRNGNIVEQRLRLSETILTSVGEGLQRVRELAVQGNNGSQTNETRRYIAGEIRQILDELV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN-------GYFTKDS------------LAKKSFDQM 165
             +N  D  G+Y+++G+ S  +P +        Y   D                 S   +
Sbjct: 123 QLSNTRDANGEYIYAGLTSLTQPFSPGAGGEVFYNGDDGQRRLQISPVRQLAIGDSGQAV 182

Query: 166 LQGFLEENSKSLL--AGQHLEVSSMNAQQMTDF---IKQLEDKFSDDEYWANNWSNASDH 220
                  N   ++     +     ++A  + DF             +      +   S  
Sbjct: 183 FMDIPTGNGTFVVRDDPGNTGGGVIDAGSVIDFNAWQADTYTISFSEVG-GELFYEVSGG 241

Query: 221 ------------------NIKYRI----KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
                              I+ RI     D +   +S + N         +A      ++
Sbjct: 242 GLPPVSTPFVEGEAIRFAGIETRIQGTPADGDSFTLSPSENQDLFATYRQLAEALEAPVT 301

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
              +    N    + L  + Q L  I++ RA +G   K +  +R   ++    + T +S+
Sbjct: 302 DTPSRARLNNAVNRALVNLDQALGNILDTRASVGSRLKTVENQRNINEDVLLQLRTTLSE 361

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A ++ +     ++ +     ++Q+LS+ N++
Sbjct: 362 IEDLDYAEAISRFNLQQTALQAAQQSYVQVQRLSLFNFI 400


>gi|58039488|ref|YP_191452.1| flagellar hook-associated protein FlgL [Gluconobacter oxydans 621H]
 gi|58001902|gb|AAW60796.1| Flagellar hook-associated protein 3 FlgL [Gluconobacter oxydans
           621H]
          Length = 353

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 128/348 (36%), Gaps = 6/348 (1%)

Query: 10  SIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSN 69
            I  ++ +  + L++    L  E  TG  S     LGA  T  L  +     ++    + 
Sbjct: 12  GISSQLLLGVQNLSQSQSSLQLEASTGVLSSSYAGLGASRTQALALQPAITQVSAWTSNV 71

Query: 70  SLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN 129
           +     L+T+Q  LS +  I QD+   L  L    T  +     A   + +  S     N
Sbjct: 72  TNAQNTLTTTQTALSQISTIAQDLTSSLSTLGSTLT-YSTVTTAATAAQSALTSLGNLLN 130

Query: 130 MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN 189
                 Y+F+G  ++  P++      S      +Q +      ++  +L+      S+  
Sbjct: 131 TKQGDSYVFAGQQNTTAPVST-DLGTSDLATQIEQAVSQLGSTSADDVLSTTEDLASNTA 189

Query: 190 AQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFV 249
           A Q              D+ +          +    +        ++      IRD+M  
Sbjct: 190 AGQPFSAAVSTSP----DQAYQQKMQVVVGQSETVSVGMVATQSATSTSTTSPIRDLMRN 245

Query: 250 AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
            ++     S + +    + L   + S+++   SG+ +   +LG+ + ++  +   L   +
Sbjct: 246 LMVVASLGSSSTSASDYSSLISGLQSSMETVTSGLGDMSGLLGVQQNSLTTQASMLSQMS 305

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + + T + +           Q++   N+++ SY +   ++ +++ +YL
Sbjct: 306 SALTTQLGQVKDAYLAQVSTQVTDTNNQLQASYSLIADMKGMTLASYL 353


>gi|220927555|ref|YP_002504464.1| flagellar hook-associated protein FlgL [Clostridium cellulolyticum
           H10]
 gi|219997883|gb|ACL74484.1| flagellar hook-associated protein 3 [Clostridium cellulolyticum
           H10]
          Length = 309

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 108/352 (30%), Gaps = 46/352 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +   M            K   ++ TG+               L+   + + I + 
Sbjct: 3   ITNNMLISNMLTALGNNESRLSKYQNQLHTGKKIQLPSDDPIVAARALKLRTDVSKIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       +  + A L+ +  I++           G     +       ++      V
Sbjct: 63  QKNLGDAQSWVDATDAALAQIGDILKRAKELATQAANGTNSITETSDIGQEMKQLKVQLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             AN T  G+Y+FSG  + +K +     + S     F+  +    E+    + AG ++ +
Sbjct: 123 HIANTTYSGRYMFSGFKTDQKLIED--DETSANFGKFEIDVNTVTEKIQFEIGAGDNINI 180

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           +               D F+                             + N     +  
Sbjct: 181 NVAGG-----------DIFNSGGN-------------------------AVNGGEPAM-- 202

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
           I     +  +  S +      N      LS   Q +  ++  RA +G  +  I+     +
Sbjct: 203 IALFTNVIADLDSGD------NAGVSSQLSQFDQQIDNLLRVRADIGARQNRIDLSADRM 256

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            N    + + +SK+  V+       L    N  + S     ++ + +++++L
Sbjct: 257 SNDLVNMTSLMSKNEDVDPAETIMNLKNEENVYQASLAGGARIIQQTLVDFL 308


>gi|254516996|ref|ZP_05129054.1| flagellar hook-associated protein 3 [gamma proteobacterium NOR5-3]
 gi|219674501|gb|EED30869.1| flagellar hook-associated protein 3 [gamma proteobacterium NOR5-3]
          Length = 402

 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/400 (13%), Positives = 130/400 (32%), Gaps = 50/400 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST  I++       E   D  +   E+ TG+         +    IL+ E++   + + 
Sbjct: 5   LSTLQIYQSGISTILEKQADLARTQLELATGKRIQSPSDDPSGAVKILDLEEDIRLVDQY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + SL   +L+  ++ L+ +  ++Q +    V               A  ++   E  V
Sbjct: 65  QRNASLAQGQLAVEESTLTGVNNVLQRVRELTVQANNATQSPETRASIAVEVKARLEELV 124

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNG--------------YFTKDSLAKKSFDQMLQGFL 170
             AN  D   +YLF+G  +  +P                 +    + A+ +         
Sbjct: 125 ALANTRDGNDEYLFAGFQAQTQPFTQQGGTVVYSGDDGQRFLDIAASAQVAVRDSGSRVF 184

Query: 171 EENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNAS-DHNIKYRIKDT 229
                   +      ++ +   +    +   D     + +   +S  +    I Y + D+
Sbjct: 185 LAVDAGNGSFDFSAAATNSGTAVVS--ESSADNSFVRDDYTVTFSQLTPADPITYSVTDS 242

Query: 230 EGIDVSANVNMRGIRDIMFVAVIGTE-----FLSKNLTDGARNVLTKK------------ 272
               V+      G       A +  E       S N+    +  + +             
Sbjct: 243 GAAVVATGNYTPGEAISFNGARLVIEGTPEDGDSINIDSAPKQSIFETLQGIVDALENSS 302

Query: 273 ---------------MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
                           L+ + Q +  ++E ++ +G+    I  ++   +  N  + T +S
Sbjct: 303 SSPSGGAAVNNALASGLNNLDQAIGNVLEVQSDVGVRLNRIESQQSINEEFNLQLQTTLS 362

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               V+   A ++L+  +  ++ +       Q L++ NY+
Sbjct: 363 DVQDVDFAEAISKLNLQLVALQAAQQTYVTTQGLTLFNYI 402


>gi|88704299|ref|ZP_01102013.1| flagellar hook associated protein type 3 FlgL [Congregibacter
           litoralis KT71]
 gi|88701350|gb|EAQ98455.1| flagellar hook associated protein type 3 FlgL [Congregibacter
           litoralis KT71]
          Length = 402

 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 59/398 (14%), Positives = 129/398 (32%), Gaps = 46/398 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST  IF+       +   D  +  +E+ TG+         +    IL+ E++   + + 
Sbjct: 5   LSTLQIFQSGISTILDKQADLARTQQELATGKRIQSPSDDPSGAVKILDLEEDIRLVDQY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + SL   +L+  +  LS++  ++Q +    V               A  +    E  V
Sbjct: 65  QRNASLAEGQLAVEETTLSAVNNVLQRVRELTVQANNATQSPETRASIAVEVNARIEELV 124

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D   +YLF+G  +  +P +      + +     + L            +G  + 
Sbjct: 125 ALANTRDGNDEYLFAGFQAQTQPFSRQGGTVTYSGDDGQRFLDIAASAQVAVRDSGSRVF 184

Query: 185 VSSMNAQQMTDFIKQL------------EDKFSDDEYWANNWSNAS-DHNIKYRIKDTEG 231
           ++        DF                 D     + +   +S A+    + Y + D+  
Sbjct: 185 LAVDAGNGSFDFAADPANTGTAVVAESSADGSFVRDDYTVTFSQATPADPVTYSVTDSSA 244

Query: 232 IDVSANVNMRG--------------------------------IRDIMFVAVIGTEFLSK 259
             V+      G                                   +  +A         
Sbjct: 245 AVVATGNYTPGDAISFNGARLVIEGTPEDGDSITLDSAPKQSIFDTLQGIADALENSAGT 304

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
                A N      L+ + Q +  ++E ++ +G+    I  ++   ++ N  + T +S  
Sbjct: 305 PSGSAAVNNALASGLNNLDQAIGNVLEVQSDVGVRLNRIESQQSINEDFNLQLQTTLSDV 364

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             V+   A ++L+  +  ++ +       Q L++ NYL
Sbjct: 365 QDVDFAEAISKLNLQLVALQAAQQTYVTTQGLTLFNYL 402


>gi|167644971|ref|YP_001682634.1| flagellin [Caulobacter sp. K31]
 gi|167347401|gb|ABZ70136.1| flagellin, putative [Caulobacter sp. K31]
          Length = 307

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 106/354 (29%), Gaps = 49/354 (13%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T +STS  F  M               E++ + ++++           +   +  +  +A
Sbjct: 2   TRVSTSGNFGVMTSNLMRAQVLQNIAGEQVSSQKNANDLKGYAKNAEVLTAMKTAQAKVA 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             L   + V+ RL      +  +    Q+        +               +  ++  
Sbjct: 62  GFLDQTTRVSNRLDVQDIGIGQVSDATQNARD----AVANAIAAGSAETLMQQMNGAFGD 117

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
            V   N    G+Y+F+G  S  +P     T  S+A  +    +    + +          
Sbjct: 118 VVQGLNSKFNGRYVFAGAKSDTQP----TTATSMADLTAGPPIATLFKNDQYVTSNRIDD 173

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             S    Q        +   F                         + +    + N    
Sbjct: 174 TTSVDTGQLADKLGTGVYGVF-------------------------QQVQAYVDANGPFT 208

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
             +                   ++   K +L T     +G++  +A  G+++K  +  + 
Sbjct: 209 GKL----------------TQTQSDFLKSLLPTFDSVKTGLVTAQAQNGLNQKRFDTAKT 252

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            L ++ + + T +     V+   A  +L +    ++ S  +   LQ  S+LN L
Sbjct: 253 DLSDQADTLTTMVGGITDVDMAEAITRLESAKLAVQASAQVFASLQNSSLLNVL 306


>gi|114320064|ref|YP_741747.1| flagellar hook-associated protein 3 [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226458|gb|ABI56257.1| flagellar hook-associated protein 3 [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 408

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 62/407 (15%), Positives = 121/407 (29%), Gaps = 56/407 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS +  +             K   ++ +G+         A  + ILE E+  N +   
Sbjct: 3   LSTSQLALQGVNSILSQQASLSKTQAQLASGRQILTPSDDPAGASRILELEKAINTVERY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      RL  S+  L+     +Q +    V    G  D       A  LR + +  V
Sbjct: 63  NRNADQAETRLGLSENILNEFGNTLQRVRELSVQAANGSQDRETRAYIASELRQAQDQLV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTK---------------DSLAKKSFDQMLQGF 169
             AN  D  G++LF+G  +  +P                            + D      
Sbjct: 123 QLANTDDGNGEFLFAGSETRTQPFTKTAGGKVVYNGDQGQREVRIGPSRTLAVDSSGFDA 182

Query: 170 LEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDT 229
             +        Q  E    +   +              E +   +       + YR+ D 
Sbjct: 183 FMKIPNGNGDYQAREAQGNSGSGIITVGDSP-ALVQPGEAYTIAFEQDGAGGMTYRVLDG 241

Query: 230 EGIDVSANVN------------------------------MRGIRDIMFVAVIGTEF--- 256
           +   V+ +                                  G R  +  A   + F   
Sbjct: 242 DDQPVAVDGEPVTGPYEPGMTLRFPAESGQSLQVKLDGRPEEGDRFEVSAARPQSVFETV 301

Query: 257 ------LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
                 L  +    A N    + L+ + QG+  II  R+ LG     ++  R   +    
Sbjct: 302 NNLIRTLEDDGDGPALNNAVNRFLADIDQGMENIIRVRSELGARLNTLDASRDANEGALL 361

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++   S+   ++   A  + +  +  ++ +    T+LQ LS+  ++
Sbjct: 362 DLNAAKSRLADLDYAEATGRFNQELVGLQAAQQTYTRLQGLSLFEFI 408


>gi|182418320|ref|ZP_02949615.1| flagellar hook-associated protein 3 [Clostridium butyricum 5521]
 gi|237666729|ref|ZP_04526714.1| flagellar hook-associated protein 3 [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377702|gb|EDT75246.1| flagellar hook-associated protein 3 [Clostridium butyricum 5521]
 gi|237657928|gb|EEP55483.1| flagellar hook-associated protein 3 [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 347

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 127/354 (35%), Gaps = 11/354 (3%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ S +        +    +   L  ++ TG++     +        ++   E +   + 
Sbjct: 3   ITNSMLVSNYMNNMQRNLGNMSTLQNQLATGKTIQRASENPYIAVRTMQLNAEISANKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  +  L T+   L     I+  +    V    G    N+       + +  + F 
Sbjct: 63  NSNITDASNWLDTTDTALGQANNIMARIKELSVKAGNGSYSENEIGAIKDEIVEKVKEFG 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N + +G ++F G  S+ KP+      D+      D+       +  K +     +  
Sbjct: 123 QVLNTSFDGNFIFGGSKSTSKPVG---VDDNGNISFIDKNGNPIDMDKIKDVNDPNKIVY 179

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNW--SNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             +++   T+  + +  +++       N+  S  +D ++   + D       A+   +G 
Sbjct: 180 DQISSSLKTEISQGVTVEYNKTAVEILNYKDSKGNDTSVINTMSDLVKCLGVASGETKG- 238

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                   +     + N +D A   ++ KM   +    S + + R+ +G  +  +   + 
Sbjct: 239 -----TITLSDGTTTINGSDDALKYISGKMTEDITAIASNVSQIRSNVGAMQNRMESAKT 293

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++++  + + +S +  ++      + S L      +   ++K+   ++L+Y+
Sbjct: 294 TNEDQSYNMTSILSNTDDIDFAEKTMEYSILQTVYIATLQTSSKILNKTLLDYM 347


>gi|322807048|emb|CBZ04622.1| flagellar hook-associated protein FlgL [Clostridium botulinum
           H04402 065]
          Length = 385

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/383 (12%), Positives = 128/383 (33%), Gaps = 32/383 (8%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +            ++  ++++++ +G++        A V   ++     +   + 
Sbjct: 3   ITNNMMANSFMSDMNNNLENLNRINQQLTSGKNFSKPSHDPAGVIRSMQLYTSIDANKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S V   L  +   L  + K +  +   L           +       +     S  
Sbjct: 63  NKNISNVINWLDVTDTALDQIGKQLGKIRDKLEEAGNPGFGETERKALKDEVNGIIASMS 122

Query: 126 TFANMTDEGQYLFSGINSSEKP-----------------------LNGYFTKDSLAKKSF 162
              N T +G+Y+FSG   + KP                       L+      S A+K  
Sbjct: 123 QTLNTTFDGKYIFSGTRVTSKPTGIEKNGKNNELVYLKNDQSVLLLDDTLKAISAAEKLS 182

Query: 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQ------MTDFIKQLEDKFSDDEYWANNWSN 216
            + +    +       +  + + S++  ++      ++          SD++       N
Sbjct: 183 GKSINEIKDSELLDFKSLVNKDPSTLTPEEKIKVDKLSSEEIDALKNLSDEDLKHLGEYN 242

Query: 217 ASDHNIKYRIKDTEGIDVSANVNM--RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKML 274
             +  +K  I +   ++ +       +G  D+  +     + L  +  +     L  + L
Sbjct: 243 QMNAKLKAEISEGVVMEYNVTATEVLQGGGDLRQLLENIVKHLESDDPNEINK-LYGEDL 301

Query: 275 STVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTL 334
             + + L  ++  RA +G  +  ++  +   +  N  +   +S    V     + + + L
Sbjct: 302 GNIDKALDNVLRIRAEVGAKQNRMDAAKEMNKETNFNMTEILSNIEDVNLVEKNMEFAIL 361

Query: 335 INKIEMSYMITTKLQKLSILNYL 357
            +    S   + K+ + ++++YL
Sbjct: 362 QSVYISSLQTSAKVLQPTLMDYL 384


>gi|168183197|ref|ZP_02617861.1| flagellar hook-associated protein 3 [Clostridium botulinum Bf]
 gi|237796174|ref|YP_002863726.1| flagellar hook-associated protein 3 [Clostridium botulinum Ba4 str.
           657]
 gi|182673643|gb|EDT85604.1| flagellar hook-associated protein 3 [Clostridium botulinum Bf]
 gi|229261031|gb|ACQ52064.1| flagellar hook-associated protein 3 [Clostridium botulinum Ba4 str.
           657]
          Length = 320

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 108/354 (30%), Gaps = 39/354 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   +            ++  +++++  +G++        A V   ++     +   + 
Sbjct: 3   ITNKMMANSFMTDMNNNLENLNRINQQSSSGKNFSKPSHDPAGVIRSMQLHTGIDANKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S V   L  +   L  + K +  +   L           +       +     S  
Sbjct: 63  NKNISNVINWLDVTDTALDQIGKQLGKIRDKLEEAGNAGYGETERKALKDEVNGIIASMS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N   +G+Y+FSG   + KP  G     +    S D     ++ ++    L     E 
Sbjct: 123 QTLNTNFDGKYVFSGTRVTGKP-TGIQKDGTTKNNSID-----YINKDGSMPLDPAGDEY 176

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM--RGI 243
             MN                                +K  I +   ++ +       +G 
Sbjct: 177 KQMNG------------------------------KLKAEISEGVVMEYNVTATEVLQGD 206

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            D+  +       L  +        L  + L  + + L  ++  RA +G  +  +   + 
Sbjct: 207 VDLRKLLENIVNHLDSDDPKEINK-LYGEDLGNIDKALDNVLRIRAEVGAKQNRMEAAKE 265

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  N  +   +S    V     H + + L      S   + K+ + ++++YL
Sbjct: 266 MNKETNFNMTEILSNIEDVNYAEKHMEFAVLQAVYISSLQTSAKILQPTLMDYL 319


>gi|188586844|ref|YP_001918389.1| flagellar hook-associated protein 3 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351531|gb|ACB85801.1| flagellar hook-associated protein 3 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 328

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 124/352 (35%), Gaps = 27/352 (7%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++   + + M        +D      ++ TG+         A     L+   E+  +A+ 
Sbjct: 3   VTNKMMSDNMLRNLNTNLRDMNHTQNKLSTGKRILSPSDDPAGTARTLDLRTEETELAKY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L+++ + L  +  ++Q +    +       D       A  + +  E  V
Sbjct: 63  KQNVDDADSWLTSTDSALDEVDDVLQRVRELTIYAASDSVDQQSREALAAEVMELKEHLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             AN    G+++F G N+++KP   +   D       +     F  E S +         
Sbjct: 123 EVANTDFGGKHIFGGHNTTDKP---FDMDDVEEMNGEEGEYNTFDVEYSGNRGRLNTDIS 179

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           S +           +      +E + +        + +   ++ E  D + + NM  + D
Sbjct: 180 SDVT----------ISKNLHGEEVFGSF-------DEEENGENGENGDEAISQNMFKMLD 222

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
            ++ +++  +             L+ + L  +   +   ++ RA +G  +  +   +  L
Sbjct: 223 GVYDSMMEDDGGGT-------EKLSNEHLQDLDHWIENNLDNRAEVGARQNRLELSKNRL 275

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           Q+  ++    +S++   +       L +  N   M+     ++ + ++L++L
Sbjct: 276 QDIEHLTKEDLSETEEADMAKTIMDLKSQENVHRMALSAGARIIQPTLLDFL 327


>gi|56964842|ref|YP_176573.1| flagellar hook-associated protein 3 FlgL [Bacillus clausii KSM-K16]
 gi|56911085|dbj|BAD65612.1| flagellar hook-associated protein 3 FlgL [Bacillus clausii KSM-K16]
          Length = 353

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 110/369 (29%), Gaps = 47/369 (12%)

Query: 11  IFERMNILTKELNK-----DSVKLHEEMVTGQSS-DYGLQLGARVTSILEWEQEKNHIAE 64
           +   +        +     D +   +++   + S D  +         ++  Q    + +
Sbjct: 9   MTNSLRYSQSSYQRLSTLYDQISAQKKIT--RFSQDPVVA-----AKSMQHRQSLAQMEQ 61

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
              + +     L+     L  +  I++ +    +          +    A  L +     
Sbjct: 62  YKRNVNEAQSWLNQGDTSLKEVSSILKRVRELAITGSTDGYGEEERKNIAHELEELRNHL 121

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLE------ENSKSLL 178
           +T AN    G+Y+F+G ++   P+    +   L  +  D +   +         ++   +
Sbjct: 122 ITVANSNVNGKYIFNGSDTDNTPVQE-LSPSKLNGEKLDNVKITYGGQIYDYDADAGHFV 180

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS--- 235
           A    +   +N + +      +                A    +  RI   +  DVS   
Sbjct: 181 ARGGEDTLVLNGENIETGTGDVV---------------AEKDMLIMRISTNQK-DVSFEL 224

Query: 236 -----ANVNMRGIRDIM--FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
                  VN    R +    +      F    L          + +S +   L    +  
Sbjct: 225 QKGVEIQVNTDA-RKLFSDELYSDFFMFEQALLDPETSAEDLGEFISKIDAHLRNAADVH 283

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
             LG     ++     L  +   +    S +  ++   A  +L         +  +T ++
Sbjct: 284 GQLGARMNRVDLMEDRLGQQEYFVKETKSMNEDLDVSEAIMKLLVAEGVHNAALAVTARI 343

Query: 349 QKLSILNYL 357
            + S+L++L
Sbjct: 344 IQPSLLDFL 352


>gi|121997312|ref|YP_001002099.1| flagellar hook-associated protein 3 [Halorhodospira halophila SL1]
 gi|121588717|gb|ABM61297.1| flagellar hook-associated protein 3 [Halorhodospira halophila SL1]
          Length = 420

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS +             +      ++ +G+               L+ ++    +   
Sbjct: 3   VSTSHMQNTAVQNMTGQQSEINDTQTQLSSGRRVLRPSDDPTSAARTLDLKRATESLERF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +  L   RLS S++ L      +Q +    V    G  D +     A  + + Y+  V
Sbjct: 63  NRNGDLARTRLSMSESALEQAGNELQRIRELTVQAANGTQDASTRSYIASEIEERYKQLV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN 149
              N  D  G+YLFSG  +  +P N
Sbjct: 123 ELGNSRDGNGEYLFSGSRTRTQPFN 147



 Score = 43.5 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 33/88 (37%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
             + L  +   +      R+ +G     ++ E+   +     +    S    ++   A  
Sbjct: 333 ADRALGDLDLAMENTYRVRSEIGARLSTLDSEKASNEAAIIDLKQATSDERDLDYAEATG 392

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +  +  +E +     ++Q LS+ +Y+
Sbjct: 393 RFNQELTGLEAAQSTFGRVQNLSLFDYI 420


>gi|319787114|ref|YP_004146589.1| flagellar hook-associated protein 3 [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465626|gb|ADV27358.1| flagellar hook-associated protein 3 [Pseudoxanthomonas suwonensis
           11-1]
          Length = 400

 Score = 74.4 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/395 (14%), Positives = 126/395 (31%), Gaps = 43/395 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS ++++         K    L +++ TG+ +           + +  ++    +   
Sbjct: 5   ISTSMMYDQSLATMLSRQKQLASLQQQIATGRKTVTAKDDPVGAGAAVGLDRSLAELERF 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + +  RL   +  L+     +  +    V        ++     A  LR   E  V
Sbjct: 65  GLNANNINNRLGMQENVLALAGDDMIRINELAVQANSDTLSDDDRRSIAAELRSLREHLV 124

Query: 126 TFANMTDE-GQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           + AN +D  G+YLF+G      P      G        ++  +     F+++        
Sbjct: 125 SLANSSDGTGRYLFAGAADDVAPFGRVAGGIAYNGDQTQRMVEIAPGTFVKDTLPGSEVF 184

Query: 181 QHLEVSSMNAQQMTDFIKQ---LEDKFSDDEY--W------------------------- 210
             +           D       + + FS      W                         
Sbjct: 185 MRVRTGDGTVDARMDPANTGSMILEGFSRSPAGGWEGAGYRVEFTGDNTYSVTDHAGNPI 244

Query: 211 -ANNWSNASD---HNIKYRIKDTEGIDVSANVNMRGIRD-IMFVAVIGTEFLSKNL---T 262
            +  W+   D     ++ RI  T     +  +   G RD    V  + +   S  +    
Sbjct: 245 ASGTWTAKQDIEFAGLRVRISGTPAEGDALEIGPAGTRDIFATVEALASALESPTVTIAD 304

Query: 263 DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322
           + AR    +  +  V +    +I+ RA+ G     I++     +  +  + T +S    +
Sbjct: 305 NAARRNALQAGMRDVARAAEQLIDARALGGAQLALIDDAGALREANSVTLKTTLSAMRDL 364

Query: 323 EQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   A  +       ++ +  + T++  LS+ N L
Sbjct: 365 DYADAITRFQLESTALQTAQTVFTRMHGLSLFNLL 399


>gi|302382562|ref|YP_003818385.1| flagellin domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302193190|gb|ADL00762.1| flagellin domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 309

 Score = 74.4 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 109/354 (30%), Gaps = 47/354 (13%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           + +ST+  F+   +      +        + T +++      G    ++   +   + + 
Sbjct: 2   SRVSTTGNFQSALLNLMASQQQQADAANRVSTQKNATDLTGFGRSSETLTALKAASSRVQ 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             + +  +V  RL      L+ M   +          + G   ++        L   + S
Sbjct: 62  GFIDTGEVVGARLEAQDLALNQMIDGIGGARE----AIGGVLASDSAGTLMLELEGQFAS 117

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
                N   +G YLF G N++++P++     D  A  +      G    ++   ++    
Sbjct: 118 VTGGLNARHQGGYLFGGANTTQQPVSVATLSDLAAAPTV----AGTFNNDTIKPVSRVAE 173

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             S       +D    +   F D + + +N                              
Sbjct: 174 NTSIETGYLASDLGSTIFQIFKDIKAYNDN------------------------------ 203

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                                A+       LS +    +  ++  +  G  +K + +  +
Sbjct: 204 ---------PATGPLTGKPTDAQKAFLTAQLSRLDAAKTATVDTASRNGSLQKRVEQIGL 254

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +   +D  +SK    +   A   L      ++ S  + ++L+ +S+LNYL
Sbjct: 255 SHTGQLTSLDEMVSKRTDADLAKAVTDLQLSQIAVQASAQVVSQLRDVSLLNYL 308


>gi|170742314|ref|YP_001770969.1| hypothetical protein M446_4186 [Methylobacterium sp. 4-46]
 gi|168196588|gb|ACA18535.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 602

 Score = 74.4 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 9/214 (4%)

Query: 153 TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN 212
              S    +    L       + S              +   D         +D      
Sbjct: 389 ALGSALDTAATTDLAASSAVRASSDFFAASASPGLAPRRVALDAAGNAAGYLADPSGRTV 448

Query: 213 NWSNASDHNIKYR------IKDTEGIDVSANVNMRGIRDIMFVAVIGTEF-LSKNLTDGA 265
            W    D +   R      I D E + +    N   +RD M    +       +  +D A
Sbjct: 449 IWYRGDDTSADPRETAQVRISDNETVGIGVQANEAPLRDAMAGLAVAASLSFQEASSDDA 508

Query: 266 RNVLTKKMLSTVQQGLSG--IIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
           R       L ++     G  I +    L ++   I  ++        ++   ++     +
Sbjct: 509 RYAAFSDRLKSLLSPDHGPTIKDISTDLTLASGRITAQKTQNGQTRLVLQNALAGVENAD 568

Query: 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 +L  L  +++ SY  T  L KLS+ NYL
Sbjct: 569 TQEVATKLLALQTQLQASYQTTATLAKLSLTNYL 602



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 3/177 (1%)

Query: 13  ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV 72
               ++  +   D   L  ++ TG+ +     LG   ++ L    + + +     +  L 
Sbjct: 16  NARRLIGLKSQLD--GLSTQLSTGKVAQTYGALGTARSTSLSAHAQVSALDASDAAIDLA 73

Query: 73  TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
             RL  + A +    K+  D           +T          +        V   N   
Sbjct: 74  KTRLDLAGASVQQAGKLASDTWSQF-ANPGTQTGGVARANLKAIAAGRLGGLVDALNQQT 132

Query: 133 EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN 189
             QYLF G  +   P+       +    +    L   + E   + L         ++
Sbjct: 133 GNQYLFGGRTTGTAPVATADAILNGDAAAHRDGLGAVIAERRSADLGTGTPRTGRLS 189


>gi|83814195|ref|YP_446734.1| flagellar hook-associated protein 3 [Salinibacter ruber DSM 13855]
 gi|83755589|gb|ABC43702.1| flagellar hook-associated protein 3 [Salinibacter ruber DSM 13855]
          Length = 319

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 109/337 (32%), Gaps = 40/337 (11%)

Query: 21  ELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQ 80
            L +D  +L E++ +G+  +      +   +    +   N +A R  S +     +  +Q
Sbjct: 23  RLQRDISRLREQISSGKRINRPSDDPSSFATAERMKTLGNQLARREESIASARTFVDRTQ 82

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
             L  +  +        V   +     +     A  LR      V   N T  G+Y+F+G
Sbjct: 83  QELDGLADLFTKAREDGVRAADDTRSADDRAAIAEELRSIKGEVVDRMNSTQGGEYIFAG 142

Query: 141 INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200
             +  +P   +    S    +        L+ +    +        +++ + +  +    
Sbjct: 143 NRTDTQP---FGADGSANDAAPINGSLDALDGDRTRPIGKNKDLTINVDGKALAQYDTDG 199

Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN 260
            D                           E I  + +             +   +    +
Sbjct: 200 GDP--------------------------ETITGALD-----------NLIKAVDPADNS 222

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
              G  +      L  V+  L  +I + +  G   + ++  +  ++  +   +   S + 
Sbjct: 223 PPSGPPDPDISTALGEVEDALDHVISKGSEAGAIGRRLSTAQEQVEAASLEANERRSDAE 282

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  TA ++L     +++ ++  T+  Q+ S++N+L
Sbjct: 283 DTDLATAISELQQRQTQLQAAFQATSSSQQTSLVNFL 319


>gi|148380697|ref|YP_001255238.1| flagellar hook-associated protein 3 [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933227|ref|YP_001384981.1| flagellar hook-associated protein 3 [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936218|ref|YP_001388451.1| flagellar hook-associated protein 3 [Clostridium botulinum A str.
           Hall]
 gi|226950151|ref|YP_002805242.1| flagellar hook-associated protein 3 [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290181|emb|CAL84300.1| flagellar hook-associated protein 3 [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929271|gb|ABS34771.1| flagellar hook-associated protein 3 [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932132|gb|ABS37631.1| flagellar hook-associated protein 3 [Clostridium botulinum A str.
           Hall]
 gi|226840871|gb|ACO83537.1| flagellar hook-associated protein 3 [Clostridium botulinum A2 str.
           Kyoto]
          Length = 320

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 108/354 (30%), Gaps = 39/354 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   +            ++  +++++  +G++        A V   ++     +   + 
Sbjct: 3   ITNKMMANSFMTDMNNNLENLNRINQQSSSGKNFSKPSHDPAGVIRSMQLHTGIDANKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S V   L  +   L  + K +  +   L           +       +     S  
Sbjct: 63  NKNISNVINWLDVTDTALDQIGKQLGKIRDKLEEAGNAGYGETERKALKDEVNGIIASMS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N   +G+Y+FSG   + KP  G     +    S D     ++ ++    L     E 
Sbjct: 123 QTLNTNFDGKYVFSGTRVTGKP-TGIQKDGTTKNNSID-----YINKDGSMPLDPAGDEY 176

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM--RGI 243
             MN                                +K  I +   ++ +       +G 
Sbjct: 177 KQMNG------------------------------KLKAEISEGVVMEYNVTAMEVLQGD 206

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            D+  +       L  +        L  + L  + + L  ++  RA +G  +  +   + 
Sbjct: 207 VDLRKLLENIVNHLDSDDPKEINK-LYGEDLGNIDKALDNVLRIRAEVGAKQNRMEAAKE 265

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  N  +   +S    V     H + + L      S   + K+ + ++++YL
Sbjct: 266 MNKETNFNMTEILSNIEDVNYAEKHMEFAVLQAVYISSLQTSAKILQPTLMDYL 319


>gi|146296675|ref|YP_001180446.1| flagellar hook-associated protein FlgL [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410251|gb|ABP67255.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 315

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 110/352 (31%), Gaps = 41/352 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +     I   +       +  +M TG+   Y           L    + + I + 
Sbjct: 3   ITNNMMVNNFLINLNKNLNRLDDIQYKMATGKKIRYPSDDPVVTARSLRLRTDVSEIEQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       + T+++ L+ + + +Q +    V    G          A  +    +  +
Sbjct: 63  QKNVDDAMSWVDTTESALADINESLQRVRELAVRGANGTNTKEDMAQIAKEVAQIKQHII 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N    G+Y+FSG  +   PLN   +                   ++ +  +     V
Sbjct: 123 QIGNTNYAGRYIFSGFKTDTAPLNSDGSF-----------------SDTGNFASNGGYPV 165

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                + +  F     +              A+  NI         I   A+ N   +  
Sbjct: 166 DLSTGKNIIQF-----ELM-----------KANYININKTANQIFYIQGEADENKGNLFK 209

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
           ++   +   E                 +LS + + +  ++ QR  +G  +  +   +  L
Sbjct: 210 VLDNLINALESGDV--------TTVNSLLSDIDRHIDNVVAQRGDVGALQNRLELIKNRL 261

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++N    T +S +  V+      QL T  N    +     ++   ++L++L
Sbjct: 262 SDENVNFTTLLSNNEDVDMAEIIMQLKTAENVYRAALRTGAQILPPTLLDFL 313


>gi|326202858|ref|ZP_08192725.1| flagellar hook-associated protein 3 [Clostridium papyrosolvens DSM
           2782]
 gi|325986935|gb|EGD47764.1| flagellar hook-associated protein 3 [Clostridium papyrosolvens DSM
           2782]
          Length = 309

 Score = 74.0 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 108/355 (30%), Gaps = 52/355 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +   M            K   ++ TG+               L+   + + I + 
Sbjct: 3   ITNNMLISNMLTALGNNESRMSKYQNQLYTGKKIQLPSDDPIVAARALKLRTDVSKIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       +  + A L+ +  I++           G   +++       ++      V
Sbjct: 63  QKNLGDAQSWVDATDAALAQIGNILKRAKELSTQAANGTNSSSETGDIGQEMKQLKVQLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             AN T  G+Y+FSG  + +K +                        +  S   G+    
Sbjct: 123 HIANSTYSGRYMFSGFQTDQKLIED----------------------DETSTDFGKFKIG 160

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV---NMRG 242
            ++  +++                    +      NI   +   +  +  +N    N   
Sbjct: 161 VNIVPEKIQ-------------------FEIGEGDNININVTGGDVFNSGSNAVYGNEPS 201

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
           +  I     +  +  S N   G RN L         + +  ++  RA +G  +  I+   
Sbjct: 202 M--IALFTNVIADLDSGN-NTGVRNQL-----DKFDEQVDNLLRVRADIGARQNRIDLSA 253

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             + N    +   +SK+   +       L    N  + S     ++ + +++++L
Sbjct: 254 DRMSNDLVNMTDLMSKNEDADPAETIMNLKMEENVYQASLAGGARIIQQTLVDFL 308


>gi|78485805|ref|YP_391730.1| flagellin-like [Thiomicrospira crunogena XCL-2]
 gi|78364091|gb|ABB42056.1| Flagellar hook-associated protein FlgL [Thiomicrospira crunogena
           XCL-2]
          Length = 341

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 121/353 (34%), Gaps = 16/353 (4%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S++    +     ++     + + E++ TG   +         + I    +  N I++ 
Sbjct: 3   VSSNQFHMQSFSAIEKHQNSVLDIQEKLTTGNRVNRPSDDPIATSQIHSLNKAVNTISQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      +LS  ++ +S+   + Q      + ++ G          A  +    +   
Sbjct: 63  EKNGEFAKSQLSLEESQISTAVDLTQRARELSIQMMNGTYTAEDRQATAQEIGQIIKHLT 122

Query: 126 TFANMTDEGQ-YLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  +  +  LF+G N            +S A +  ++        N+ +    +   
Sbjct: 123 GIMNSNNSEEELLFAGNNVDAAAAFVVDPANSGALQPGNEYYAYIGSANAGAQFDNR--- 179

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            ++  ++ +       +    DD+  ++      +    + I        S    +    
Sbjct: 180 -ANFGSRFVQIGFDNDQTAAPDDKGDSSRVRITDNGAKVFNIPGGAT---SLPAGVDP-- 233

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           +++ V V   + L +             +   +   + G+ +Q+A +G  +  I  +   
Sbjct: 234 NLLNVLVGLKDSLDQGNPPP------DAVADDLLSAVKGLSKQQAEIGSRQNRIQTQFEA 287

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            Q  +  +         ++     +QL+   N ++M+  + +K+Q +S+ +YL
Sbjct: 288 GQTFSMALQERRVNIEEMDVVEGISQLNMRQNALQMAQQVFSKVQGMSLFDYL 340


>gi|320354351|ref|YP_004195690.1| flagellar hook-associated protein 3 [Desulfobulbus propionicus DSM
           2032]
 gi|320122853|gb|ADW18399.1| flagellar hook-associated protein 3 [Desulfobulbus propionicus DSM
           2032]
          Length = 322

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 112/360 (31%), Gaps = 41/360 (11%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK T  +T  +            ++   +     TG+  +      A +  +L   ++ +
Sbjct: 1   MKATQGTTYRMLGSRLNTVATQLEELRSIG---ATGKKLNNPSDDPASIRPVLNTRKQLS 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
           ++   L +       +  +  HL  ++ I+Q     +   + G  ++    + A  +   
Sbjct: 58  NVDRYLETMGKSLDTMQATDGHLEHVENIMQRAKEIMTNAINGSLNDADRSVLADEIAQI 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +  +  AN    G+YLF+G      P         +   ++D  L    +  +   L  
Sbjct: 118 RKELLDAANGMVGGKYLFAGYEEDTVPF--------VTNPAYDPALYDPTDSTTWPYLYQ 169

Query: 181 QHLEVSSM---NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237
                +S+     + +   +    D F     W        D      I+          
Sbjct: 170 GDENSTSLEITTGELIQVNLTGN-DLFFGTSSW--------DPANPNSIEPG-------- 212

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
                 R  +F  +   E   +     A        L+ ++         R+ LG     
Sbjct: 213 ------RYDLFAELTQAEEAIRANDQTAMQT----SLADLEGAAEQNRRLRSQLGNRASR 262

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +     + +     +   +S+    +   +   +       + +  +T K+ +LSIL+++
Sbjct: 263 VETAMDYQEGVRVDLKQILSRYEDADAIESFNAIVQQETAFQAALNVTAKVSQLSILDFI 322


>gi|269103182|ref|ZP_06155879.1| flagellar hook-associated protein FlgL [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163080|gb|EEZ41576.1| flagellar hook-associated protein FlgL [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 412

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 55/415 (13%), Positives = 131/415 (31%), Gaps = 65/415 (15%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWE---QEKN 60
           + IST S +  +              + ++ TG+  D     G    S +  +   Q+  
Sbjct: 2   SRISTLSQYNNLTSNLMRKQTQLSHTNNQLATGKRVD---TSGDDPVSSISIQNYKQQLT 58

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I +   + +L   RL   + +++ ++  +      ++ +L G    N        L+  
Sbjct: 59  QIGQYKDAITLANNRLGVLETNIAGVEDNLDVTKQKVLGMLNGAMAANDRKAFKDELQSL 118

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPL------NGYFTKDSLAKKSFD-------QML 166
           Y+  ++ AN  D  G Y+F+G     KP         Y       +   D        + 
Sbjct: 119 YDGLLSLANSKDEAGNYIFAGNQMDTKPFIEKDGYMTYQGDSQSRQTQIDSNMNVKTSLP 178

Query: 167 QGFLEENSKSLLAGQHLEVSSMN--------AQQMTDF---------------------- 196
              +  +  +         + +         +  ++DF                      
Sbjct: 179 GDQVFMDIPNPYGDFRPNFAGLTEGSKAHVLSADISDFSKAKAIQVSFSDGGTTAGPNGE 238

Query: 197 ----------IKQLE----DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242
                     I   E      +  ++      S A D  +  +  + +  D       + 
Sbjct: 239 TVKVTNYSLSIDGTEVVKDQPYDPEKGIEYTGSTAGDPTLNLKFAEMQDGDTITLQPAQS 298

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
                 +    T   +   +  A+  L ++++  +  G   + +QR+ +G   K +  ++
Sbjct: 299 FNIFDSIQAAITYADAPTSSPEAQANL-QRVIDDLDAGFVHMNQQRSEVGSIMKQVERQQ 357

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +    ++T       ++  +A   L+     ++ S    ++ + LS+ NYL
Sbjct: 358 EQHLDFELTLNTAHGGLEDLDYSSAVLDLNQQAMALQASQAAFSQTKNLSLFNYL 412


>gi|260892171|ref|YP_003238268.1| flagellar hook-associated protein 3 [Ammonifex degensii KC4]
 gi|260864312|gb|ACX51418.1| flagellar hook-associated protein 3 [Ammonifex degensii KC4]
          Length = 296

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 109/357 (30%), Gaps = 62/357 (17%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  +   +   +  L   L     K  EE+ +G+  +        V S L    +  
Sbjct: 1   MRVT--TNMLVTNFLRNLNSRL-DQIAKRQEELASGRRLNRPSDDPTGVMSALRLRAQLA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
              +   + +     L+ ++A L      VQ +    V               A  + + 
Sbjct: 58  ENQQYHKNMADAVDWLNATEAALRDALATVQRVRELAVAGASDALPQGAREALAQEVEEL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            E     AN T  G+Y+F+G  +   P +    +       ++      ++ N+ S  A 
Sbjct: 118 KEHLGNIANTTYGGRYIFAGTRTDLPPYSNGSLQSYPGGIEYEIAPATTIKVNTLSSEA- 176

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               V +  A       K + +  +                +   ++D +  D+S     
Sbjct: 177 --FSVPNATAN------KDIFEVLNQ---------------LSSDLRDGKTQDIS----- 208

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                                          + L  + Q +  +++  A +G   K +  
Sbjct: 209 ------------------------------NQRLQELDQSIDNLLKVLAEVGAKVKRLEM 238

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               L+     +   +S++   +       L T  N    +  +  +L + S++++L
Sbjct: 239 GMERLETNEADLTRLLSQTEDADMARTIVDLKTQENVYRAALAVGARLLQPSLVDFL 295


>gi|312793869|ref|YP_004026792.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181009|gb|ADQ41179.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 315

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 105/353 (29%), Gaps = 43/353 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +     I   +       +  +M TG+   Y           L    + + I + 
Sbjct: 3   ITNNMMVNNFLINLNKNLSRLDDIQYKMATGKKIRYPSDDPVITARSLRLRTDVSEIEQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    T  + T+++ L+ + + +Q +    V    G          A  +    +  +
Sbjct: 63  QKNVDDATSWVDTTESALADINESLQRVRELAVRGANGTNTKEDMAQIAKEVAQIKQHII 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLN-GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N    G+Y+FSG  +   PLN      D+    S           N+          
Sbjct: 123 QVGNTNYAGRYIFSGFKTDTAPLNSDGSFSDTGGFTSSGGYPIDLSTGNNIIQFELMKAN 182

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
              +N      F  Q E   +    +           +   I   E  DV+         
Sbjct: 183 YIGINKTANQIFYIQGEADENKGNLFK---------VLDNLINALESGDVNT-------- 225

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                       +LS + + +  ++ QR  +G  +  +   +  
Sbjct: 226 -------------------------VNSLLSDIDRHIDNVVAQRGDVGALQNRLELIKNR 260

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           L + N    T +S +  V+      QL T  N    +     ++   ++L++L
Sbjct: 261 LSDDNVNFTTLLSNNEDVDMAEIIMQLKTAENVYRAALQTGAQILPPTLLDFL 313


>gi|153938132|ref|YP_001392017.1| flagellar hook-associated protein 3 [Clostridium botulinum F str.
           Langeland]
 gi|152934028|gb|ABS39526.1| flagellar hook-associated protein 3 [Clostridium botulinum F str.
           Langeland]
 gi|295320032|gb|ADG00410.1| flagellar hook-associated protein 3 [Clostridium botulinum F str.
           230613]
          Length = 320

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 114/355 (32%), Gaps = 41/355 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   +            ++  ++++++ +G++        A V   ++     +   + 
Sbjct: 3   ITNKMMANSFMTDMNNNLENLNRINQQLTSGKNFSKPSHDPAGVIRSMQLYTGIDANKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S V   L  +   L  + K +  +   L           +       +     S  
Sbjct: 63  NKNISNVINWLDVTDTALDQIGKQLGKIRDKLEEAGNPGFGETERKALKDEVNGIIASMS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N T +G+Y+FSG   + KP  G     +    S D     ++  +    L     E 
Sbjct: 123 QTLNTTFDGKYIFSGTRVTGKP-TGIQKDGTTKNNSID-----YVNRDGSMPLNPAGDEY 176

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM--RGI 243
             MN                                +K  I +   ++ +        G 
Sbjct: 177 KQMNG------------------------------KLKAEISEGVVMEYNVTATEVLEGD 206

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            D+  +     + L  N      N L  + L  + + L  ++  RA +G  +  ++  + 
Sbjct: 207 VDLRKLLENIVKHLDSN-DQSEINKLYGEDLGNIDKALDNVLRIRAGVGAKQNRMDAAKE 265

Query: 304 FLQNKNNI-IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  + NI +   +S    V+    + + + L      S   + K+ + ++++YL
Sbjct: 266 -MNKETNINMTEILSNIEDVDYAEKNMEFAVLQAVYISSLQTSAKVLQPTLMDYL 319


>gi|295690746|ref|YP_003594439.1| flagellar hook-associated protein FlgL [Caulobacter segnis ATCC
           21756]
 gi|295432649|gb|ADG11821.1| flagellar hook-associated protein FlgL [Caulobacter segnis ATCC
           21756]
          Length = 307

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 100/354 (28%), Gaps = 49/354 (13%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T +ST   +  M             +  ++ + + +            +      +  + 
Sbjct: 2   TRVSTVQNYNVMTSNLMRAQIRQSDVGNQVSSQKVATDLKGYAKNAEMLTAMRSTQARLE 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             +  + LVT RL      L  +    +     +   L     +         L+ ++  
Sbjct: 62  GLISQSKLVTNRLQMQDTGLGKVADSTKSAREAIANAL----ASGSAQTMMQQLQAAFGD 117

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
            V   N    G Y+FSG  +     +     D     +   +       +          
Sbjct: 118 VVQGLNTKSNGLYVFSGAKTDTATTSAAAMTDLTLAPTTASLFN----NDQYITTNRIDE 173

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           + S+        F   + D F                                       
Sbjct: 174 QTSAKTGVLGDAFGVSVFDAFKQ------------------------------------- 196

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
              +   V      +  L D  +    K +L T      G ++ +   G+++K       
Sbjct: 197 ---VQAYVEANGPFTGKLND-VQVTFLKGLLPTFDAAYKGAVDAQGKNGVTQKRFESAET 252

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            LQN+ + + + +   + V+   A  +L +    ++ S  + + LQ+ S+LN L
Sbjct: 253 DLQNQADTLTSMVGDIVDVDMADAVTRLESAKLAVQASAQVFSSLQQSSLLNVL 306


>gi|168180855|ref|ZP_02615519.1| flagellar hook-associated protein 3 [Clostridium botulinum NCTC
           2916]
 gi|182668320|gb|EDT80299.1| flagellar hook-associated protein 3 [Clostridium botulinum NCTC
           2916]
          Length = 320

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 114/355 (32%), Gaps = 41/355 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   +            ++  ++++++ +G++        A V   ++     +   + 
Sbjct: 3   ITNKMMANSFMTDMNNNLENLNRINQQLTSGKNFSKPSHDPAGVIRSMQLYTGIDANKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S V   L  +   L  + K +  +   L           +       +     S  
Sbjct: 63  NKNISNVINWLDVTDTALDQIGKQLGKIRDKLEEAGNPGFGETERKALKDEVNGIIASMS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N T +G+Y+FSG   + KP  G     +    S D     ++  +    L     E 
Sbjct: 123 QSLNTTFDGKYIFSGTRVTGKP-TGIQKDGTTKNNSID-----YVNRDGSMPLNPAGDEY 176

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM--RGI 243
             MN                                +K  I +   ++ +        G 
Sbjct: 177 KQMNG------------------------------KLKAEISEGVVMEYNVTATEVLEGD 206

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            D+  +     + L  N      N L  + L  + + L  ++  RA +G  +  ++  + 
Sbjct: 207 VDLRKLLENIVKHLDSN-DQSEINKLYGEDLGNIDKALDNVLRIRAGVGAKQNRMDAAKE 265

Query: 304 FLQNKNNI-IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  + NI +   +S    V+    + + + L      S   + K+ + ++++YL
Sbjct: 266 -MNKETNINMTEILSNIEDVDYAEKNMEFAVLQAVYISSLQTSAKVLQPTLMDYL 319


>gi|170760719|ref|YP_001788055.1| flagellar hook-associated protein 3 [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407708|gb|ACA56119.1| flagellar hook-associated protein 3 [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 320

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 114/355 (32%), Gaps = 41/355 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   +            ++  ++++++ +G++        A V   ++     +   + 
Sbjct: 3   ITNKMMANSFMTDMNNNLENLNRINQQLTSGKNFSKPSHDPAGVIRSMQLYTGIDANKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S V   L  +   L  + K +  +   L           +       +     S  
Sbjct: 63  NKNISNVINWLDVTDTALDQIGKQLGKIRDKLEEAGNPGFGETERKALKDEVNGIIASMS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N T +G+Y+FSG   + KP  G     +    S D     ++  +    L     E 
Sbjct: 123 QTLNTTFDGKYIFSGTRVTGKP-TGIQKDGTTKNNSID-----YVNRDGSMPLDPAGDEY 176

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM--RGI 243
             MN                                +K  I +   ++ +        G 
Sbjct: 177 KQMNG------------------------------KLKAEISEGVVMEYNVTATEVLEGD 206

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            D+  +     + L  N      N L  + L  + + L  ++  RA +G  +  ++  + 
Sbjct: 207 VDLRKLLENIVKHLDSN-DQSEINKLYGEDLGNIDKALDNVLRIRAGVGAKQNRMDAAKE 265

Query: 304 FLQNKNNI-IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  + NI +   +S    V+    + + + L      S   + K+ + ++++YL
Sbjct: 266 -MNKETNINMTEILSNIEDVDYAEKNMEFAVLQAVYISSLQTSAKVLQPTLMDYL 319


>gi|170757647|ref|YP_001782345.1| flagellar hook-associated protein 3 [Clostridium botulinum B1 str.
           Okra]
 gi|169122859|gb|ACA46695.1| flagellar hook-associated protein 3 [Clostridium botulinum B1 str.
           Okra]
          Length = 320

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 39/354 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +            ++  ++ +++ +G++        A V   ++     +   + 
Sbjct: 3   ITNNMMANSFMTDMNNNLENLDRIRQQLTSGKNFSKPSHDPAGVIRSMQLYSGIDANKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S V   L  +   L  + K +  +   L           +       +     S  
Sbjct: 63  NKNISNVINWLDVTDTALDQIGKQLGKIRDKLEEAGNPGFGETERKALKDEVNGIIASMS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N T +G+Y+FSG   + KP  G     +    S D     ++  +    L     E 
Sbjct: 123 QSLNTTFDGKYIFSGTRVTGKP-TGVQKDGTTKNNSID-----YVNRDGSMPLDPAGDEY 176

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM--RGI 243
                +QM                            +K  I +   ++ +        G 
Sbjct: 177 -----KQME-------------------------GKLKAEISEGVVMEYNVTATEVLEGG 206

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            D+  +     + L  +      + L  + L  + + L  ++  RA +G  +  +   + 
Sbjct: 207 GDLRKLLEDIVKHLDSD-DQSEISKLYGEDLGNIDKALDNVLRIRAEVGAKQNRMEAAKE 265

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  N  +   +S    ++    + + + L +    S   + K+ + ++++YL
Sbjct: 266 MNKETNFNLHEILSNIEDIDLVEKNMEYAILQSVYISSLQTSAKILQPTLMDYL 319


>gi|154252986|ref|YP_001413810.1| hypothetical protein Plav_2544 [Parvibaculum lavamentivorans DS-1]
 gi|154156936|gb|ABS64153.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
          Length = 497

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 80/226 (35%), Gaps = 8/226 (3%)

Query: 140 GINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA--GQHLEVSSMNAQQMTDFI 197
           G +++    N     D+  +      L+      + +             ++        
Sbjct: 272 GTDAATTAANFQAALDTAVQTEASVTLKAASAVEASNNFFDYQAGGSPQRVDGPPFASAT 331

Query: 198 KQLEDKFSDDEYW-ANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF 256
              +   +D  +W   + S  + +N+  +I     +   A  +   IRD + ++ + +  
Sbjct: 332 GLRDATDADTVFWYKGDLSGTAGNNMVAQIDSGRQVSYGARADQAAIRDTLKMSALLSAV 391

Query: 257 LSKNLTD----GARNVLTKKMLSTVQ-QGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
              +  D     +   L+ ++   +  +G+  +      LG++   ++  +         
Sbjct: 392 EYSDADDLSQRKSYAALSTRVGDKLSFKGVQSLESIVTGLGLTAATLSNTQDRHDLVMAT 451

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  +      + +    +L+ L  +++ SY +T  L ++S+ NYL
Sbjct: 452 SNELLGDIQNADDYEVGVKLTMLQTQLQASYQVTAMLSQMSLANYL 497



 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 76/216 (35%), Gaps = 6/216 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST S    +      +      L  ++ TG  +D   +LG     +L    + N I+  
Sbjct: 3   ISTLSQSLALRQSINNMRAQFDDLQRQLSTGLKTDSYAKLGTDRNVVLSLSHQLNQISAY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
            ++ S    R+      L+ +  I  +M    V+    +  N K           ++  V
Sbjct: 63  TNTISKTQMRIEVMSDALTRVNSISSEM-KTGVLTSGFELVNGKQTTAQISAAMQFDEMV 121

Query: 126 TFANMTDEGQYLFSGINSSEKP--LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ-H 182
              N+  E +YLF G+++  +P  L       S AK    Q +    + +  +   G+  
Sbjct: 122 NLMNLQVEDRYLFGGVDTQTRPVALPDEIMNGSGAKAGLKQFIDERAQADMGADGRGRLT 181

Query: 183 LEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNAS 218
           L ++        D    +       E   +  SNA+
Sbjct: 182 LGIAGATVTLAEDAAPSIFG--FKLEGATSTLSNAT 215


>gi|294508670|ref|YP_003572729.1| flagellar hook-associated protein FlgL [Salinibacter ruber M8]
 gi|294344999|emb|CBH25777.1| flagellar hook-associated protein FlgL [Salinibacter ruber M8]
          Length = 320

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 111/337 (32%), Gaps = 39/337 (11%)

Query: 21  ELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQ 80
            L +D  +L E++ +G+  +      +   +    +   N +A R  S +     +  +Q
Sbjct: 23  RLQRDISRLREQISSGKRINRPSDDPSSFATAERMKTLGNQLARREESIASARTFVDRTQ 82

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
             L  +  +        V   +     +     A  LR      V   N T +G+Y+F+G
Sbjct: 83  QELDGLADLFTRAREDGVRAADDTRSADDRAAIANELRSIKGEVVDRMNSTQDGEYIFAG 142

Query: 141 INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200
             +  +P   +    S    +        L+ +    +        +++ + +  +    
Sbjct: 143 NRTDTQP---FGADGSANDAAPINGSLDALDGDRTRPIGKNQDLTVNVDGKALAQY---- 195

Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN 260
                                           D +A  +   I   +   +   +    +
Sbjct: 196 --------------------------------DTTAGGDPETITGALDNLIKAVDPADNS 223

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
              G  +      L  V+  L  +I + +  G   + ++  +  ++  +   +   S + 
Sbjct: 224 PPSGPPDPDISTALGEVEDALDHVISKGSEAGAIGRRLSTAQEQVEAASLEANERRSDAE 283

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  TA ++L     +++ ++  T+  Q+ S++N+L
Sbjct: 284 DTDLATAISELQQRQTQLQAAFQATSSSQQTSLVNFL 320


>gi|312135424|ref|YP_004002762.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           owensensis OL]
 gi|311775475|gb|ADQ04962.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           owensensis OL]
          Length = 315

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 104/353 (29%), Gaps = 43/353 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +     I   +       +  +M TG+   Y           L    + + I + 
Sbjct: 3   ITNNMMVNNFLINLNKNLSRLDDIQYKMATGKKIRYPSDDPVVTARSLRLRTDVSEIEQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       +  +++ L+ + + +Q +    V    G          A  +    +  +
Sbjct: 63  QKNVDDAISWVDITESALADITENLQRVRELTVRGANGTNTKEDMAQIAKEVAQIKQHII 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLN-GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N    G+Y+FSG  +   P+N      D+ +  S           N+          
Sbjct: 123 QVGNTNYAGRYIFSGFKTDTAPINPDGSFSDTGSFTSSGGYPIDLSTGNNIIQFELMKAN 182

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
              +N      F  Q E   +    +                     +D   N    G  
Sbjct: 183 YIGINKTANQIFYIQGEADENKGNLFK-------------------VLDNLINALESG-- 221

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                          ++           +LS + + +  ++ QR  +G  +  +   +  
Sbjct: 222 ---------------DVNT------VNSLLSNIDRHIDNVVAQRGDVGALQNRLELIKNR 260

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           L + N    T +S +  V+      QL T  N    +     ++   ++L++L
Sbjct: 261 LSDDNVNFTTLLSNNEDVDMAEIIMQLKTAENVYRAALQTGAQILPPTLLDFL 313


>gi|312877568|ref|ZP_07737527.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795643|gb|EFR12013.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 315

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 105/353 (29%), Gaps = 43/353 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +     I   +       +  +M TG+   Y           L    + + I + 
Sbjct: 3   ITNNMMVNNFLINLNKNLSRLDDIQYKMATGKKIRYPSDDPVITARSLRLRTDVSEIEQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    T  + T+++ L+ + + +Q +    V    G          A  +    +  +
Sbjct: 63  QKNVDDATSWVDTTESALADVNESLQRVRELAVRGANGTNTKEDMAQIAKEVAQIKQHII 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLN-GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N    G+Y+FSG  +   PLN      D+    S           N+          
Sbjct: 123 QVGNTNYAGRYIFSGFKTDTAPLNSDGSFSDTGGFTSSGGYPIDLSTGNNIIQFELMKAN 182

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
              +N      F  Q E   +    +           +   I   E  DV+         
Sbjct: 183 YIGINKTANQIFYIQGEADENKGNLFK---------VLDNLINALESGDVNT-------- 225

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                       +LS + + +  ++ QR  +G  +  +   +  
Sbjct: 226 -------------------------VNSLLSDIDRHIDNVVAQRGDVGALQNRLELIKNR 260

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           L + N    T +S +  V+      QL T  N    +     ++   ++L++L
Sbjct: 261 LSDDNVNFTTLLSNNEDVDMAEIIMQLKTAENVYRAALQTGAQILPPTLLDFL 313


>gi|157738147|ref|YP_001490831.1| flagellar hook-associated protein FlgL [Arcobacter butzleri RM4018]
 gi|157700001|gb|ABV68161.1| flagellar hook-associated protein FlgL [Arcobacter butzleri RM4018]
          Length = 376

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 97/306 (31%), Gaps = 32/306 (10%)

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
           + +S+++  ++ +   L+      T        A  L    ++ +  AN   EGQYLFSG
Sbjct: 73  SAISTVKLKLESVKEELIKANTSTTSIEGLEAIAQNLSGYKQNLLDLANTQVEGQYLFSG 132

Query: 141 INSSEKPLN-------GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQM 193
            +SS K           Y   DSL K + D+   G   E+  + L   +   +S +  + 
Sbjct: 133 SDSSVKAFTMDANGKVTYNGNDSLRKIAVDE---GSYRESGVNGLELFYYTANSASKGET 189

Query: 194 TDFIKQLEDKFSDDEYWA----------NNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             F         +   W            NW  + D                   N  G 
Sbjct: 190 LTFEDADRILDQEGNEWTLDTATNILSKKNWDGSFDTLTVTPPTAPATEYSVTVPNTDGT 249

Query: 244 RDIMFVAVI------------GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVL 291
           R     +V                  +  LT   R          + +  + +    A L
Sbjct: 250 RFEAKRSVFDLLDDAVSSLKGLDSSGNATLTYEQRRAGISSAQDEIDKANNNVSIAHADL 309

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351
           G   K  N     +++K +  +   ++           +L +L       Y   ++  +L
Sbjct: 310 GARNKTFNNSLDIIESKISQYNKTYTEIGSSNLTEVGIKLKSLELMFSALYSTISQTNQL 369

Query: 352 SILNYL 357
           S++NY+
Sbjct: 370 SLVNYM 375


>gi|258512521|ref|YP_003185955.1| flagellin domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479247|gb|ACV59566.1| flagellin domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 325

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 107/339 (31%), Gaps = 37/339 (10%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
           +N     + EE+ TG+  +        V+  ++   E + ++  L + S     ++ +Q 
Sbjct: 19  INTAMQNVQEELSTGKVLNLPQDDPVAVSEDMDLSAEVSQVSASLSTISTGLSWMNATQT 78

Query: 82  HLSSMQKIVQDMVGPLVILLEGKT-DNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
            +  +   +Q +   +V  L             A  +    +     A+     +YLF G
Sbjct: 79  AIQGIISQLQQIQSDIVAALNTPNQSQGGLAGYAATVSQLIQGVYQIADQMVGNRYLFGG 138

Query: 141 INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200
                              ++ +     +L+ +               +  +  D     
Sbjct: 139 -------------------QADNTAPTTYLKTSPTDTPQPIPPGAGPSSGSRSYDPFDD- 178

Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN 260
                         S AS  NI Y+I D   + V+       +      A    + L+  
Sbjct: 179 --------------SQASPPNINYQIADGVSVRVTVTAYDLFLVQPSSTAPNLQDTLNNI 224

Query: 261 LTD--GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            TD     +   K+ LS +Q  L+ +I   A LG   + +   +  L      +      
Sbjct: 225 QTDIYSGNSGNLKQDLSDLQVNLNQVINLNAALGARIQRMTAAQNQLTQYQTNLTDLKGG 284

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             G +      Q ST     E +  +  ++   S++NYL
Sbjct: 285 IEGADMARVLTQFSTDQVIYEAALQMGAQILLPSLVNYL 323


>gi|251799724|ref|YP_003014455.1| flagellar hook-associated protein 3 [Paenibacillus sp. JDR-2]
 gi|247547350|gb|ACT04369.1| flagellar hook-associated protein 3 [Paenibacillus sp. JDR-2]
          Length = 319

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 99/347 (28%), Gaps = 38/347 (10%)

Query: 11  IFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNS 70
           +  +M            KL  ++ TG++ +        +T  L +  E     +   ++ 
Sbjct: 10  MSSQMLGNITNNLNSMNKLQNQLATGKAINKPSDDPIGITFALRYRGEIASNDQYTDNSD 69

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM 130
                L      +     IVQ     +V    G  +          +   Y   V   N 
Sbjct: 70  AALSSLEYMDTTIGQATDIVQRFRELIVKGSNGTLEQTSMTAIQTEVSQLYNQMVEIGNS 129

Query: 131 TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNA 190
              G+ +F+G  +  KP                        +      A   +  +  N 
Sbjct: 130 QFNGKQMFNGEQTGVKP------------------YSTLGLDQQSDPSADPPILKAFSNQ 171

Query: 191 QQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVA 250
                   +L    + D     N            +      D S   +    + +    
Sbjct: 172 TDTGSIQYELSPGMTMDVNMTGN-----------DVFGAPVADESDTTSDNLFQLMHRAY 220

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
            +      + LT          +L  +   ++ ++  RA +G     +   +  L + + 
Sbjct: 221 DMLGSGDQEGLTG---------LLGQIDTRMNTMLTARAQVGARVNRVEIVQGRLSDVDI 271

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +     K   V+   A   ++TL N  + S     K+ + S++++L
Sbjct: 272 NLQQMQQKVEDVDMAEAITNITTLENVYQASLSAGAKIIQPSLVDFL 318


>gi|315636290|ref|ZP_07891540.1| flagellar hook-associated protein FlgL [Arcobacter butzleri JV22]
 gi|315479379|gb|EFU70062.1| flagellar hook-associated protein FlgL [Arcobacter butzleri JV22]
          Length = 376

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 96/308 (31%), Gaps = 36/308 (11%)

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
           + +S+++  ++ +   L+      T        A  L    ++ +  AN   EGQYLFSG
Sbjct: 73  SAISTVKLKLESVKEELIKANTSTTSIEGLEAIAQNLSGYKQNLLDLANTQVEGQYLFSG 132

Query: 141 INSSEKPLN-------GYFTKDSLAKKSFDQML---QGFLEENSKSLLAGQHLEVSSMNA 190
            +SS K           Y   DSL K + D+      G    +     A    +  ++  
Sbjct: 133 SDSSVKAFTMDANGKVTYNGNDSLRKIAVDEGSYRESGVNGLDLFYYTANSASKGENLTF 192

Query: 191 QQMTDFIK--------QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV-NMR 241
           ++    +                  + W   +   S              + S  + N  
Sbjct: 193 EEGDRILDQEGNEWTLDTVANTLSKKNWDGTFDTLSVTP-----PTAPATEYSVTIPNTD 247

Query: 242 GIRDIMFVAVI------------GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
           G R     +V                  +  LT   R          + +  + +    A
Sbjct: 248 GTRFEAKRSVFDLLDDAVSSLKGLDSSGNATLTYEERRAGISSAQDEIDKANNNVSIAHA 307

Query: 290 VLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQ 349
            LG   K  +     +++K +  +   ++           +L +L       Y   ++  
Sbjct: 308 DLGARNKTFDNSLDIIESKISQYNKTSTEIGSSNLTEVGIKLKSLELMFSALYSTISQTN 367

Query: 350 KLSILNYL 357
           +LS++NY+
Sbjct: 368 QLSLVNYM 375


>gi|134280688|ref|ZP_01767398.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei 305]
 gi|125657225|gb|ABN48713.1| flagellin and related hook-associated protein [Burkholderia
           pseudomallei]
 gi|134247710|gb|EBA47794.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei 305]
          Length = 304

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 117/354 (33%), Gaps = 54/354 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+++     M  + ++     +     M T +              +    +    + + 
Sbjct: 3   ITSNQYHSIMTQVNRQATAGLMDTQIRMATEKRILRPSDDPTGAVRLAMLVRADAMLDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQD-MVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             + +++  RL  S+  +S +   +Q+  V  L   ++G          A +L    ++ 
Sbjct: 63  RATGAMLNSRLQHSERVMSGIVDQLQNEAVKHLGFAMDGSRSPEDLSAYAQVLASVRDTL 122

Query: 125 VTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           +  AN  D  G YLFSG   +  P+         ++ +F+  L     E   +++     
Sbjct: 123 LQSANTRDSSGNYLFSGTAITTAPIRFDPAAPVGSRYTFEGNL-----EKQTAVVGDGVT 177

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           EV++ +  +M D +  L++  +                           + +AN N    
Sbjct: 178 EVANESLAEMADGLNALDEAIAKMS------------------------EPNANPNDPAY 213

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           RD                       +  +   T++  L+ +  +   +G ++  +     
Sbjct: 214 RD-----------------------VLGRATDTIESVLASVNAKIGRMGSTQARLQMLDE 250

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   + +        +          + +  ++ S  +  ++ +L++LN L
Sbjct: 251 LHESAQIVGNQAALDVGKISPEEVFTDYQSYMVALQASQKLYAEVTQLTLLNVL 304


>gi|326402282|ref|YP_004282363.1| hypothetical protein ACMV_01340 [Acidiphilium multivorum AIU301]
 gi|325049143|dbj|BAJ79481.1| hypothetical protein ACMV_01340 [Acidiphilium multivorum AIU301]
          Length = 353

 Score = 71.3 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 99/311 (31%), Gaps = 12/311 (3%)

Query: 47  ARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTD 106
                 L        +   + +  +   ++   Q  + ++  I    +     +      
Sbjct: 55  GSAGQTLILNSSIATLNNTISNLKIAQGQMGVQQNAIQTISDIASKALTQFEGV--NSLS 112

Query: 107 NNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQML 166
            +     A   R +     +  N  D  +Y+FSG +S+  P+    +  S A        
Sbjct: 113 GSALSTAAATARSAVTQIASLLNSQDGTRYIFSGQDSTIPPVPNATSFTSAA------FY 166

Query: 167 QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI 226
                  +   ++G     S+      +  +       S         +     N    I
Sbjct: 167 VSIQSATNSLSVSGVFAAASNTTNSPFSSTLASNPGVPSVLGAGGVPITTGIAANANQFI 226

Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIE 286
             + G + + +     + DI+             L++         + +++   ++ + +
Sbjct: 227 GPSVGTNTTGSY----MTDILATLSAIGSLQPGQLSNSGFTNFANAISTSLGNAINTMAQ 282

Query: 287 QRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITT 346
               LG ++  +N +   LQ  +N     ++    V+     +QLS    +++ SY +  
Sbjct: 283 DAGALGNNQALVNTQITDLQQTSNAFTNQVAGFDQVDMTKTLSQLSATQTQLQASYQLIA 342

Query: 347 KLQKLSILNYL 357
            ++ +S+  Y+
Sbjct: 343 AVKTMSLTQYI 353


>gi|325295213|ref|YP_004281727.1| flagellar hook-associated protein 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065661|gb|ADY73668.1| flagellar hook-associated protein 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 316

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 120/338 (35%), Gaps = 41/338 (12%)

Query: 20  KELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTS 79
           ++ + D  +  EE+ +G+   Y           L +++  + + +   +  L   +L T+
Sbjct: 17  RKRSVDLTRKTEELSSGKKLLYPSDNPVDAARALRFKKLISTLNQYNRNIDLAKTQLETA 76

Query: 80  QAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           ++ L ++  + Q+    +V I+  G  + ++         +     +  +N      Y+F
Sbjct: 77  ESALDTIINVSQEARAKIVQIMNTGVINEDEAKTLKDYFENLKSYIIGQSNTKVADHYIF 136

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
            G+ +  KP N             D   QG  +E + ++  G     +            
Sbjct: 137 GGVKTQTKPFND------------DGTYQGETQETTIAIANGVETNTT------------ 172

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
                F+  EY   N+S+        +I   E ID   ++   G    +    I  +   
Sbjct: 173 -----FNGKEYLGVNYSS-------NKILIVEVIDKIISLIDSGNLQQLNSITIDVDL-- 218

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
               D   N  + K+L    +GLS I+E R+++G         +V  +N        +SK
Sbjct: 219 --TNDSTNNPTSIKLLDAFDKGLSKIMEYRSIIGTKIGTAENLKVQNENMRLHYSNLVSK 276

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
               +   A A+        E       + + LS+L Y
Sbjct: 277 IEDADYTAAIAEYEKAKTAYEALLATIQQTKDLSLLKY 314


>gi|125974727|ref|YP_001038637.1| flagellar hook-associated protein FlgL [Clostridium thermocellum
           ATCC 27405]
 gi|256005262|ref|ZP_05430229.1| flagellar hook-associated protein 3 [Clostridium thermocellum DSM
           2360]
 gi|281418804|ref|ZP_06249823.1| flagellar hook-associated protein 3 [Clostridium thermocellum JW20]
 gi|125714952|gb|ABN53444.1| flagellar hook-associated protein 3 [Clostridium thermocellum ATCC
           27405]
 gi|255990813|gb|EEU00928.1| flagellar hook-associated protein 3 [Clostridium thermocellum DSM
           2360]
 gi|281407888|gb|EFB38147.1| flagellar hook-associated protein 3 [Clostridium thermocellum JW20]
 gi|316941861|gb|ADU75895.1| flagellar hook-associated protein 3 [Clostridium thermocellum DSM
           1313]
          Length = 302

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 101/339 (29%), Gaps = 57/339 (16%)

Query: 21  ELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQ 80
           +      K  + + TG+               L+   +   I +   +       L  ++
Sbjct: 18  KNLARMDKYQQMLATGKKITVPSDDPVVAARALKLRTDVAQIEQYKTNVQDAMSWLEITE 77

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
           + ++++  I+Q      V    G T           +       +  AN T  G+Y+FSG
Sbjct: 78  SAVANVGDILQRARELAVQASSGTTTEEDTKKIKQEVEQLKNQLIKIANSTYAGRYIFSG 137

Query: 141 INSSEKPLNG--YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
             ++ + ++   YFT D    ++                  G    ++          I 
Sbjct: 138 FKTNTRLMDDDGYFTMDVANSEAI-------------IYQIGISDSIN----------IN 174

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
                  +                         ID  A    + I D     +   +   
Sbjct: 175 VPGGDLFNGG-----------------------IDAGAGGKGKLIADF-EAYINALDSGD 210

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            +L   A        ++ + + L+ ++  RA +G     +      L   +      +S+
Sbjct: 211 HSLISDA--------ITNIDENLNHVLRIRADIGARYNRLELTADRLDIDSINFRKLMSE 262

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  V+Q      L T  N    S     ++ + S++++L
Sbjct: 263 NEDVDQAENILLLKTEENVYRASLSGGARIIQTSLVDFL 301


>gi|312622117|ref|YP_004023730.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202584|gb|ADQ45911.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 315

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 114/353 (32%), Gaps = 43/353 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +     I   +       +  +M TG+   Y           L    + + I + 
Sbjct: 3   ITNNMMVNNFLINLNKNLSRLDDIQYKMATGKKIRYPSDNPVITARSLRLRTDVSEIEQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       + T+++ L+ + + +Q +    V    G          A  +    +  +
Sbjct: 63  QKNVDDAISWVDTTESALADINESLQRVRELAVRGANGTNTKEDMAQIAKEVAQIKQHII 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N    G+Y+FSG  +   P+N   +               F + NS     G  +++
Sbjct: 123 QVGNTNYAGRYIFSGFKTDTAPINSDGS---------------FSDTNSFDSTGGYPIDL 167

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYR-IKDTEGIDVSANVNMRGIR 244
           S    + +  F                         +K   I   +  +    +      
Sbjct: 168 S--TGKNIIQF-----------------------ELMKANYISINKTANQVFYIQGETDE 202

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           +   +  +    ++   +  A +V    +LS + + +  ++ QR  +G  +  +   +  
Sbjct: 203 NKGNLFKVLDNLINALESGDATSV--NSLLSDIDRHIDNVVAQRGDVGALQNRLELIKNR 260

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           L + N    T +S +  V+      QL T  N    +     ++   ++L++L
Sbjct: 261 LSDDNVNFTTLLSNNEDVDMAEIIMQLKTAENVYRAALQTGAQILPPTLLDFL 313


>gi|197104257|ref|YP_002129634.1| flagellin [Phenylobacterium zucineum HLK1]
 gi|196477677|gb|ACG77205.1| flagellin [Phenylobacterium zucineum HLK1]
          Length = 310

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 105/356 (29%), Gaps = 48/356 (13%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
             T +ST   +  +        +  ++  E++ T ++             +      K  
Sbjct: 1   MVTRVSTPGNYAAVLANLLGAQQRQMQAGEKVSTQKNGTDLKDYARDAEMLTAMRSLKAR 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I      N+ + +RLST    L+ +    Q +   +   +     + +       L   +
Sbjct: 61  IEVYQEQNTFIAERLSTQDTALNRIADAAQGVRQAIAEAI----ASGRVDTLMEDLEAQF 116

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            +     N    G+YLF+G     +P+                      +  S   +A  
Sbjct: 117 RNAAEGMNARYGGKYLFAGGQVDTRPMTA----------------TALSDLTSGPPIANW 160

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
               S + + ++ +         +DD                  +   + I         
Sbjct: 161 FKNDSFLTSAKVDEATTVSTGILADDVG-------------TDMLAAFQTIQAFHEGGSG 207

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                M                 A+    +  L+T       +    A  G+ +K +   
Sbjct: 208 PFTGAM---------------TDAQRTFLEGQLATWDGVREDVTNVAARNGMIQKRVETV 252

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           R  L+ ++N +   +      +   A AQL      ++ +  + T LQ+ S+L+ L
Sbjct: 253 REDLKTRDNALAGMMGDITDADMAEAVAQLQQAQLSVQAAAHVFTTLQESSLLSIL 308


>gi|308186400|ref|YP_003930531.1| Flagellar hook-associated protein 3 (HAP3) [Pantoea vagans C9-1]
 gi|308056910|gb|ADO09082.1| Flagellar hook-associated protein 3 (HAP3) [Pantoea vagans C9-1]
          Length = 321

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 109/349 (31%), Gaps = 36/349 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ IFE+      +     +K  E++ +G+  +         +  +   Q +    + 
Sbjct: 3   ISTNMIFEQQVRGITDSQASWLKSGEQLSSGRRVNNPSDDPIAASRAVVLSQTQQQGKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +   + LS  +  L  +   +    G +V    G   ++     A  L       +
Sbjct: 63  ALARTFAEQGLSLEENTLKGVTDGIIAAQGLIVNGSTGTLSDSDRGSIATQLEGIRAQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G+Y+F+G  +   P               D + Q      + ++       
Sbjct: 123 NQANSQDANGRYIFAGYKTDSAPFVDTAGTGVSYAGGTDAITQKVDTSRTMTVGHTGDNI 182

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
             +++                                        E    ++  N+  + 
Sbjct: 183 FMAISGN-----------------------------------ATKEPDGSASETNVFKML 207

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D    A+   +  +   T         K    +   L+ ++  R+ +G     I+     
Sbjct: 208 DSAIAALKVPQDDADAATKQTFQDAMDKTNRGLGNSLNNVLTVRSEIGTQLSEIDTLNAQ 267

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             +++ I  + +S  + V+   A +  +     ++ SY   T + K+S+
Sbjct: 268 GDDRSVIYSSQMSDLVNVDLTEAASSYTMQQTALQASYKTFTDMSKMSL 316


>gi|254182887|ref|ZP_04889480.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           1655]
 gi|184213421|gb|EDU10464.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           1655]
          Length = 304

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 117/354 (33%), Gaps = 54/354 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+++     M  + ++     +     M T +              +    +    + + 
Sbjct: 3   ITSNQYHSIMAQVNRQATAGLMDTQIRMATEKRILRPSDDPTGAVRLAMLVRADAMLDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQD-MVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             + +++  RL  S+  +S +   +Q+  V  L   ++G          A +L    ++ 
Sbjct: 63  RATGAMLNSRLQHSERVMSGIVDQLQNEAVKHLGFAMDGSRSPEDLSAYAQVLASVRDTL 122

Query: 125 VTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           +  AN  D  G YLFSG   +  P+         ++ +F+  L     E   +++     
Sbjct: 123 LQSANTRDSSGNYLFSGTAITTAPIRFDPAAPVGSRYTFEGNL-----EKQTAVVGDGVT 177

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           EV++ +  +M D +  L++  +                           + +AN N    
Sbjct: 178 EVANESLAEMADGLNALDEAIAKMS------------------------EPNANPNDPAY 213

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           RD                       +  +   T++  L+ +  +   +G ++  +     
Sbjct: 214 RD-----------------------VLGRATDTIESVLASVNAKIGRMGSTQARLQMLDE 250

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   + +        +          + +  ++ S  +  ++ +L++LN L
Sbjct: 251 LHESAQIVGNQAALDVGKISPEEVFTDYQSYMVALQASQKLYAEVTQLTLLNVL 304


>gi|254419611|ref|ZP_05033335.1| hypothetical protein BBAL3_1921 [Brevundimonas sp. BAL3]
 gi|196185788|gb|EDX80764.1| hypothetical protein BBAL3_1921 [Brevundimonas sp. BAL3]
          Length = 321

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 98/356 (27%), Gaps = 39/356 (10%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T ++T+  ++   +        +    E M + + +      G     +      +  + 
Sbjct: 2   TRVATAGNYQSALLNLMTAQSRAELAQERMGSEKIATDMAGYGRGAEQLTSLTSTQARLE 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             + +      RLS     +  + +        +   L               L   Y++
Sbjct: 62  GFIGAGESAAARLSAQDLAMGRIYEAGTGAREAIANGL----AAGSITNLMTELGLHYQN 117

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
                N   +G YLFSG      P       D  A               + +       
Sbjct: 118 VQGGLNAEHQGSYLFSGGRGDVAPATAKTMADLAA-----------APSTASTFANDSLK 166

Query: 184 EVSSMNAQQMTD--FIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
           + S ++   M +  F+         + +           N++     T  I         
Sbjct: 167 QKSRIDENTMVETGFLADEIGGPLTEVF----------RNMQAYQNGTPVIIDGVTYTPT 216

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
           G+  +                           ++ + +   G+  Q A  G+ + ++   
Sbjct: 217 GVGTL------------TGQPGAGVTAFLNAQMTQLDKANQGVTNQNAKNGLVQNHVESA 264

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +++   +D  + K  G +   A   L      I+ S  +   L+  S+L+ L
Sbjct: 265 LEAHESQKIALDKMMLKKTGYDPAQAVTDLQMAQVAIQASAQVINSLRSTSLLDLL 320


>gi|325288762|ref|YP_004264943.1| flagellar hook-associated protein 3 [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964163|gb|ADY54942.1| flagellar hook-associated protein 3 [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 304

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 107/336 (31%), Gaps = 51/336 (15%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
                 KL  +M TG            + + L  +   + +A+   +       ++T+ +
Sbjct: 19  AQGKLDKLQNQMSTGLRIFRPSDDPVGIENALRLKGNLSMVAQYQKNAGEALNYMNTTDS 78

Query: 82  HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141
            L  + K++Q     ++    G    N+    A  + +  E     AN     +YLF+G 
Sbjct: 79  VLGDLTKMIQRAQELVLSANNGTNSLNERNAIAQEISEINEQVKALANTKVGNKYLFAGT 138

Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201
            + + P++G     +     FD                       ++    M D      
Sbjct: 139 KTEQAPMSGGTWSGNTDSVQFDVG--------------------ENIKISIMVDG----- 173

Query: 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
            +         +  +A              I   A  +      +       TE    + 
Sbjct: 174 QQLFTTPNGTYSLLSA-------------TITTPAGTSDGIFDQL------LTELGGSD- 213

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
                  ++ ++L ++ Q L  +   RA LG     +   +  L + N  +   +S    
Sbjct: 214 ------SISGEVLDSLDQNLQNVTALRAELGARTNRLESIQSQLASMNYNLQANLSNVED 267

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           V+   A    +  +N  + +  +  ++ + S+++++
Sbjct: 268 VDMAKAITDFTNQVNVYQSALAVGARIIQPSLVDFM 303


>gi|120554040|ref|YP_958391.1| flagellar hook-associated protein FlgL [Marinobacter aquaeolei VT8]
 gi|120323889|gb|ABM18204.1| flagellar hook-associated protein 3 [Marinobacter aquaeolei VT8]
          Length = 410

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 120/407 (29%), Gaps = 55/407 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS+  IF       +++N + V   +++ TG+  +           IL+ +QE       
Sbjct: 4   ISSQQIFSGGINRLQDINSNLVNTQQQLSTGKKVNKPSDDPVAAARILKLDQELQRSETY 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +L   RL   ++ L+S   I+Q +    V    G    N     +  L++      
Sbjct: 64  GRNANLADNRLKQEESTLASAVDIIQRVRELTVQAGNGSLSANDRQSISAELKERLGQLA 123

Query: 126 TFANMTD-EGQYLFSGINSSEK-----------------------------PLNGY---- 151
             AN  D  G+Y+FSG   S                               P++ +    
Sbjct: 124 NIANTRDASGEYIFSGFQGSTPAFAQNDDGKWVYQGDEGQRVLEIDDGVTVPISDHGKGI 183

Query: 152 --------FTKDSLAKKSF------------DQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
                   F K S +   +                   + ++    +         ++A 
Sbjct: 184 FVDVAKGVFAKGSTSVDGYISNLEFVAPKDMTDAFSPRVPDDFDIAVTANGAGDLEISAS 243

Query: 192 QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAV 251
                I              + +  A         +D +   +  N        I  +  
Sbjct: 244 YTRGGIIYPLAVEPAGALVGDEFQVAGVKLTINDAQDGDTFTLGVNDKQSVFGTIENLIA 303

Query: 252 IGTEFL-SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
                  +   +    + L  + L  +      II ++  LG     +     FL++   
Sbjct: 304 GLDGISKTTPKSSAEYDALIAETLVNLDNAQESIILKQTELGGRLNAVESTTAFLEDSAL 363

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 S+   V+   A + LS     ++ +     ++ +LS+ + L
Sbjct: 364 YTKEIRSQLQDVDYAEAISNLSFQSFVLQAAQQSFAQVSQLSLFDRL 410


>gi|167905096|ref|ZP_02492301.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           NCTC 13177]
          Length = 304

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 117/354 (33%), Gaps = 54/354 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+++     M  + ++     +     M T +              +    Q    + + 
Sbjct: 3   ITSNQYHSIMTQVNRQATAGLMDTQIRMATEKRILRPSDDPTGAVRLAMLVQADAMLDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQD-MVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             + +++  RL  S+  +S +   +Q+  V  L   ++G          A +L    ++ 
Sbjct: 63  RATGAMLNSRLQHSERVMSGIVDQLQNEAVKHLGFAMDGSRSPEDLSAYAQVLASVRDTL 122

Query: 125 VTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           +  AN  D  G YLFSG   +  P+         ++ +F+  L     E   +++     
Sbjct: 123 LQSANTRDSSGNYLFSGTAITTAPIRFDPAAPVGSRYTFEGNL-----EKQTAVVGDGVT 177

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           EV++ +  +M D +  L++  +                           + +AN N    
Sbjct: 178 EVANESLAEMADGLNALDEAIAKMS------------------------EPNANPNDPAY 213

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           RD                       +  +   T++  L+ +  +   +G ++  +     
Sbjct: 214 RD-----------------------VLGRATDTIESVLASVNAKIGRMGSTQARLQMLDE 250

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   + +        +          + +  ++ S  +  ++ +L++LN L
Sbjct: 251 LHESAQIVGNQAALDVGKISPEEVFTDYQSYMVALQASQKLYAEVTQLTLLNVL 304


>gi|332994155|gb|AEF04210.1| flagellar hook-associated protein FlgL [Alteromonas sp. SN2]
          Length = 407

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 131/408 (32%), Gaps = 59/408 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS ++++      E  +  VK  E++ TG+              +L   +E + + + 
Sbjct: 3   ISTSQVYDQSIRSIMENQEGLVKTQEQLATGKRIITPADDPVGAAKVLRLTEELDGLTQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +N LVT  L   +A L+++   +      +V    G  D+         L        
Sbjct: 63  QRNNDLVTGSLEQQEAVLTNITNSINRARTLVVQAGSGILDDPDKRAIGAELEQIKLEIF 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLE------------- 171
              N  D +G Y+++G  S+ +           A          F++             
Sbjct: 123 DLMNTQDADGNYMYAGYQSANQAFTYNPASSGNAITFSGDAGVSFIQLSSSSKIQSTSNG 182

Query: 172 -ENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI---- 226
            E  +++L+     V+      + + + + +  F  D ++  N+   +  N  Y++    
Sbjct: 183 YEVFENVLSRFDFSVTGSTVADLQNTVVKEQGTF--DTFFNKNYDPVTSANNDYQVEFLA 240

Query: 227 -KDTEGIDVSANV-------------NMRGIRDIMFVAV--------------------- 251
             + +  +                   ++G++     AV                     
Sbjct: 241 SGEAQLTNTGTGAVVGTVGYTSGSPFTIKGMQFEASAAVGDTINFSLDAPEKKSMAQSLH 300

Query: 252 -IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
            I T  +   + D A        L  +  GL  I  +RA +G S  NI E          
Sbjct: 301 EIQTILMDSTIDDSALQEAIADSLVGLDNGLEKISLERASIG-SRLNIAESTYESNLDME 359

Query: 311 I-IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           I      S    V+   A  + +     +  +     ++  LS+ N++
Sbjct: 360 IAAKASRSSIQDVDYAEASTEFAKQETALNAALATFPQVSNLSLFNFI 407


>gi|222529659|ref|YP_002573541.1| flagellar hook-associated protein FlgL [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456506|gb|ACM60768.1| flagellar hook-associated protein 3 [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 315

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 109/352 (30%), Gaps = 41/352 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +     I   +       +  +M TG+   Y           L    + + I + 
Sbjct: 3   ITNNMMVNNFLINLNKNLSRLDDIQYKMATGKKIRYPSDNPVITARSLRLRTDVSEIEQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       + T+++ L+ + + +Q +    V    G          A  +    +  +
Sbjct: 63  QKNVDDAISWVDTTESALADINESLQRVRELAVRGANGTNTKEDMAQIAKEVAQIKQHII 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N    G+Y+FSG  +   P+N   +         D             L  G+++  
Sbjct: 123 QVGNTNYAGRYIFSGFKTDTAPINSDGSFS-------DTNSFDSTGGYPIDLSTGKNIIQ 175

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
             +        I ++ ++    +   +         +   I   E  DV  +VN      
Sbjct: 176 FELMKANYIS-INKIANQVFYIQGETDENKGNLFKVLDNLINALESGDV-TSVNS----- 228

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
                                      +LS + + +  ++ QR  +G  +  +   +  L
Sbjct: 229 ---------------------------LLSDIDRHIDNVVAQRGDVGALQNRLELIKNRL 261

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            + N    T +S +  V+      QL T  N    +     ++   ++L++L
Sbjct: 262 SDDNVNFTTLLSNNEDVDMAEIIMQLKTAENVYRAALQTGAQILPPTLLDFL 313


>gi|312127298|ref|YP_003992172.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777317|gb|ADQ06803.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 315

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/352 (12%), Positives = 107/352 (30%), Gaps = 41/352 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +     I   +       +  +M TG+   Y           L    + + I + 
Sbjct: 3   ITNNMMINNFLINLNKNLSRLDDIQYKMATGKKIRYPSDDPVITARSLRLRTDVSEIEQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    T  ++T+++ L+ + + +Q +    V    G          A  +    +  +
Sbjct: 63  QKNVDDATSWVNTTESALADINESLQRVRELAVRGANGTNTKEDMAQIAKEVAQIKQHII 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N    G+Y+FSG  +   P+N   +         D             L  G+++  
Sbjct: 123 QVGNTNYAGRYIFSGFKTDTAPINSDGSFS-------DTGDFTSTGGYPVDLSTGKNIIQ 175

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
             +        I +  ++    +   +         +   I   +  D S          
Sbjct: 176 FELMKANYI-GINKTANQVFYIQGETDENKGNLFKVLDNLINALQNGDGST--------- 225

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
                                      +L+ + + +  ++ QR  +G  +  +   +  L
Sbjct: 226 ------------------------VNSLLADIDRHIDNVVAQRGDIGALQNRLELIKNRL 261

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            + N    T +S +  V+      QL T  N    +     ++   ++L++L
Sbjct: 262 SDDNVNFTTLLSNNEDVDMAEIIMQLKTAENVYRAALQTGAQVLPPTLLDFL 313


>gi|254255093|ref|ZP_04948410.1| Flagellin [Burkholderia dolosa AUO158]
 gi|124899738|gb|EAY71581.1| Flagellin [Burkholderia dolosa AUO158]
          Length = 353

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 118/356 (33%), Gaps = 54/356 (15%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  IS+    + M       +  + +L +++ +GQ              +++ E++ + 
Sbjct: 48  MTMRISSRHFGDTMLWTLHASSGKAAQLMQKIGSGQRIQRPSDDPVGTVRLMQLERDASR 107

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           +A+   +   ++ RL  ++AHL  M + V      L+   +G          AG LR   
Sbjct: 108 VAQYQKNIDTLSVRLMQNEAHLDGMLQSVMSARDVLLAATDGSASAGDLNAMAGPLRSLT 167

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           ++    AN  D  G YLF+G  +   P+   F   + A   +        +  +      
Sbjct: 168 DALAQAANAKDGNGHYLFAGTLTDTPPIE--FDATAPAGSRYRFAGNTGQQYVAVGDGVT 225

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
           Q   V+  N +++ + +    +  +D                         +D S     
Sbjct: 226 QAANVAVENLERVLNGLDLAVEALADPA-----------------------VDGSVPA-- 260

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                                    R VL   +      G+  +  + A LG +   +  
Sbjct: 261 ------------------------TRAVLADALDVLDVDGIDALSGKIAALGGAHNTLAL 296

Query: 301 ERVFLQNKNNIIDTYISKSIG-VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                     + +   S  +G ++   A  +L+     ++ +Y    K+++LS+ +
Sbjct: 297 LSEN-HAAMRVANGQASTLVGELDFAEAIEELNRYTMAVQGTYHAYGKIRQLSLFD 351


>gi|254443148|ref|ZP_05056624.1| flagellar hook-associated protein 3 [Verrucomicrobiae bacterium
           DG1235]
 gi|198257456|gb|EDY81764.1| flagellar hook-associated protein 3 [Verrucomicrobiae bacterium
           DG1235]
          Length = 303

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 120/356 (33%), Gaps = 59/356 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ ++  + +    + + KD   L+E++ TGQ      +  A    IL+ ++EK+ I + 
Sbjct: 3   VTNNTFPDTLLSHLQRVTKDMNMLNEQVATGQRISKVSEDSASANRILDMQEEKHRITQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +      +T+ + L +  +I    VG L  L +G    +     A  + +  +  +
Sbjct: 63  SKNAARAQNINNTTISQLQNFIQISDR-VGELATLADGLKGADGMRAYAEEVDELIKHAM 121

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKD----SLAKKSFDQMLQGFLEENSKSLLAGQ 181
             AN    G+Y+F G++S  +P       D    +    +          E   S     
Sbjct: 122 QSANAKFNGEYIFGGVDSGTEPFVANTDADGKIIAAPGGAVTYEGAATGPEFHLSETGKI 181

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                    QQ+ DFI ++ +                           + ++   +    
Sbjct: 182 KPFTDGATNQQLGDFINRMVE-------------------------LRDALETGDSA--- 213

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                                      +T  M + +++    +I   +  G  +  I  +
Sbjct: 214 --------------------------AVTSTMRTDLEESEDEMIFALSRQGSVQMRIEFD 247

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               + +   ++  IS    V+      +L+ + N  + S     ++   S+L+Y+
Sbjct: 248 LSLNKQRFTDLEENISAEADVDIAQTVVRLTQVQNAYQASLKSAGQVLNQSLLDYI 303


>gi|83647166|ref|YP_435601.1| flagellar hook-associated protein FlgL [Hahella chejuensis KCTC
           2396]
 gi|83635209|gb|ABC31176.1| Flagellin and related hook-associated protein [Hahella chejuensis
           KCTC 2396]
          Length = 412

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 137/416 (32%), Gaps = 70/416 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IST  +F R      ++     K   ++ +G+     +D  +      T IL+  QE + 
Sbjct: 3   ISTQQLFNRGLDNILDVTSQLQKTQLQISSGRRVLTPADDPVA----STRILQINQELSL 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I +   + +L   RLS     L  + +++Q +    V   +G  + +     A  ++   
Sbjct: 59  IDQYKSNINLAENRLSLEDGLLDGVGEVIQRLRELTVQAGDGSQNADDKKFIAAEVQQRL 118

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL-----------------------NGYFTKDSL 157
              V   N  D  G+Y+F+G    ++P                        N        
Sbjct: 119 SQLVGMLNTKDPSGEYIFAGFQGKQEPFQLNAAGAYRYVGDEGRRFMQIDANVSVAAGDN 178

Query: 158 AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTD------FIKQLEDKFSDDEYWA 211
            K+ F  +        +++         + +   QM D      F  +      +DE   
Sbjct: 179 GKEVFVNIKSANNTFYTQASPRNTAEPPAIITQGQMIDQELYDAFYPEDMVVVFNDE--T 236

Query: 212 NNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM----------------------FV 249
           +    A +++I  R      ++       + I+                           
Sbjct: 237 DVVPPAPNYSIVQRSDGKPVLNNQRYATGQPIQVQGVQFEIIGSPQPGDTFFVQSSEKQG 296

Query: 250 AVIGTEFLSKNLTD-----GARNVLT---KKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
            +   E L++ L D       R  LT      L+      + ++E R+ LG     I++ 
Sbjct: 297 LLTTVERLAEGLEDYQDTPAGRQTLTDLLDSTLANFTNAETKLLETRSRLGARLNTIDDT 356

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   ++   +    +S+   ++   A + L+     ++ +    +++  LS+ + L
Sbjct: 357 KQLHEDVEVLTKEVLSELQDLDYAEAVSNLTLQNFVLQAAQQSYSRVTSLSLFDLL 412


>gi|317047698|ref|YP_004115346.1| flagellar hook-associated protein 3 [Pantoea sp. At-9b]
 gi|316949315|gb|ADU68790.1| flagellar hook-associated protein 3 [Pantoea sp. At-9b]
          Length = 320

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 119/349 (34%), Gaps = 37/349 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ IF +      +     +K+ E++ +G+            +  +   Q +   A+ 
Sbjct: 3   LSTNMIFNQQVRGITDSQASWLKVGEQLSSGRRVTNPSDDPIAASRAVVLSQTQAKSAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S   + LS  +  LSS+   +QD    +V    G   ++     A  L       +
Sbjct: 63  ATARSFANQSLSMEENTLSSVTSSIQDAQTLIVQGSTGTLSDDDRASIATSLEGIRSQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G Y+F+G  +  +P     T  +    S                       
Sbjct: 123 GLANSKDGNGNYIFAGYQTDTEPFTDDGTGVTYVGGS----------------------- 159

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
                   +T  +         D   +   S  S+   +     +E        N+  + 
Sbjct: 160 ------NPITQKVDDSRTMSVGDTGTSVFMSITSNAKAEPDGSASET-------NLFNML 206

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D    A+   +  + + T         K    +   L+ ++  R+ +G     ++     
Sbjct: 207 DSAIAALKVPQDNADDATKQTFQDAMDKTNRGLSNSLNNVLSVRSAVGSKMSELDTLDAQ 266

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             +++ I+ + +S  + V+  +A +  +     ++ SY + T++ K+S+
Sbjct: 267 GDDRDTIMASQMSDLVDVDYTSAISSYTMQQTALQASYTVFTQMSKMSL 315


>gi|88813661|ref|ZP_01128890.1| Flagellin-like protein [Nitrococcus mobilis Nb-231]
 gi|88789079|gb|EAR20217.1| Flagellin-like protein [Nitrococcus mobilis Nb-231]
          Length = 400

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 53/398 (13%), Positives = 110/398 (27%), Gaps = 46/398 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ I +       +      K+ +++ +G+         +     L        I   
Sbjct: 3   ISTNQIQQLGLNALLDQQSRLTKVQQQIASGRRILTPADDPSGAARSLILAHSIGAIESY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             S   +  R+    + L   Q ++Q +    V         +        +R ++   V
Sbjct: 63  SRSADQIKPRMQLEDSTLEQTQNLIQRLRELAVQANNATQTADNRHQIGAEVRQTFIQLV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL--------------NGYFTKDSLAKKSFDQMLQGFL 170
             AN TD  G+YLF+G+ S  +P                      S  + +         
Sbjct: 123 QLANSTDGNGEYLFAGLQSRTQPFLRAGNTVTYQGDQGQRLAQTGSHQQLATTHSGYDVF 182

Query: 171 EENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
            +             S      +   +   +        +A  +       + Y +    
Sbjct: 183 MKIRTGDGQFTAEAASINTGSGIISPVTVTDPGALTGSSYAVTFDINGAGALTYTLSKDG 242

Query: 231 G------IDVSANVNMRG-------------------------IRDIMFVAVIGTEFLSK 259
                   D S  +   G                            +   A         
Sbjct: 243 TPTATQPYDSSTPIRFDGLSVTLDGTPAKGDQFTIQPSGFGSLFDTVDRFATALETAQDG 302

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
                A   +  + L  + Q L  I+  RA +G     ++  +   +       T  S  
Sbjct: 303 PTGRTAYQNVGNQTLQGLDQALDHILTIRAEVGSRLNALDSSQEANEAALLNFQTTKSAL 362

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   A  +LS  +  ++ +     ++Q+LS+ N+L
Sbjct: 363 DDLDYAKAITELSQRLLGLQAAQKSYAQIQELSLFNFL 400


>gi|77918752|ref|YP_356567.1| flagellar hook-filament junction protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77544835|gb|ABA88397.1| flagellar hook-filament junction protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 296

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 107/357 (29%), Gaps = 61/357 (17%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MKTT  +T      +            +  E   +G   +      + V  ++  + +  
Sbjct: 1   MKTTLTATY---RTLQSQISRSTAKMQQYQETAASGIKLNTSSDDPSAVAPVINAQSQIR 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                  +    T  L    + L  ++ ++      ++    G   + +       +   
Sbjct: 58  SGERFQSTVVAATNYLDNQDSTLDQLENLMVQAKELVLAAGNGSLGDGEIAAYGQQMTSL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            E     AN   EG+YLF+G  +  +P                  LQ          +  
Sbjct: 118 REEAFALANTQVEGKYLFAGFKTDTQPFPDPMDPTDYQGDGNHTELQ----------IGP 167

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               V+++   +                                                
Sbjct: 168 GQKVVTNLTGAE-----------LFGGS-------------------------------D 185

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            G+  +  ++ +     +       +  LT+  L  ++ G   +   R+ +G +   + E
Sbjct: 186 GGLNILALLSDLEQNLGAL----DTQQALTR--LDDLETGADQVRGYRSKMGTTAVRVEE 239

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             V +Q   + ++  +S     +   A++ L+     ++ +  +T K+ +LSIL+YL
Sbjct: 240 AGVRMQEFTDSMEVKLSGYRDADIIEAYSDLAQQEQALQAALSVTAKISQLSILDYL 296


>gi|167725937|ref|ZP_02409173.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           DM98]
          Length = 304

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 117/354 (33%), Gaps = 54/354 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+++     M  + ++     +     M T +              +    Q    + + 
Sbjct: 3   ITSNQYHSIMAQVNRQATAGLMDTQIRMATEKRILRPSDDPTGAVRLAMLVQADAMLDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQD-MVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             + +++  RL  S+  +S +   +Q+  V  L   ++G          A +L    ++ 
Sbjct: 63  RATGAMLNSRLQHSERVMSGIVDQLQNEAVKHLGFAMDGSRSPEDLSAYAQVLASVRDTL 122

Query: 125 VTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           +  AN  D  G YLFSG   +  P+         ++ +F+  L     E   +++     
Sbjct: 123 LQSANTRDSSGNYLFSGTAITTAPIRFDPAAPVGSRYTFEGNL-----EKQTAVVGDGVT 177

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           EV++ +  +M D +  L++  +                           + +AN N    
Sbjct: 178 EVANESLAEMADGLNALDEAIAKMS------------------------EPNANPNDPAY 213

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           RD                       +  +   T++  L+ +  +   +G ++  +     
Sbjct: 214 RD-----------------------VLGRATDTIESVLASVNAKIGRMGSTQARLQMLDE 250

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   + +        +          + +  ++ S  +  ++ +L++LN L
Sbjct: 251 LHESAQIVGNQAALDVGKISPEEVFTDYQSYMVALQASQKLYAEVTQLTLLNVL 304


>gi|288960284|ref|YP_003450624.1| hypothetical protein AZL_a05490 [Azospirillum sp. B510]
 gi|288912592|dbj|BAI74080.1| hypothetical protein AZL_a05490 [Azospirillum sp. B510]
          Length = 682

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 103 GKTDNNKFPINAGMLRDSYESFVTFAN----MTDEGQYLFSGINSSEKPLNGYFTKDSLA 158
             TD      N G + D         N    +T        GI  +          +   
Sbjct: 430 SDTDYAAGVTNVGQVADKLRQTFGTLNPAPPVTINAAGSGPGIALTSTANADPNHPNRST 489

Query: 159 KKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNAS 218
             S    +     +N+ S+      + S +N+     +    +  F D EY     +  +
Sbjct: 490 LFSTSAKVTNGSLQNTMSVATLPPQQDSQVNSP----YTDPPDLPFYDAEYLTKGKNADA 545

Query: 219 DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQ 278
               +  I D   +    + + +G + ++    +     +     G     + K    + 
Sbjct: 546 YRKSQVTIDDNLNLTYGVSADEKGFQSLVKAMQMVR---TAASNPGKWTEYSTKARELLT 602

Query: 279 QGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI 338
           Q    I    A +      ++  +    +    +   ++K  G+++    A+LS+ +N  
Sbjct: 603 QATDQIRSIHAKVASDSATLDNTKSAHTDSIATLTDRVAKIEGIDETEVAARLSSAMNIQ 662

Query: 339 EMSYMITTKLQKLSILNYL 357
           + +Y +  + QKLS+LNYL
Sbjct: 663 QATYTVAGQTQKLSLLNYL 681


>gi|254299679|ref|ZP_04967128.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           406e]
 gi|157809563|gb|EDO86733.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           406e]
          Length = 304

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 117/354 (33%), Gaps = 54/354 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+++     M  + ++     +     M T +              +    Q    + + 
Sbjct: 3   ITSNQYHSIMAQVNRQATAGLMDTQIRMATEKRILRPSDDPTGAVRLAMLVQADAILDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQD-MVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             + +++  RL  S+  +S +   +Q+  V  L   ++G          A +L    ++ 
Sbjct: 63  RATGAMLNSRLQHSERVMSGIVDQLQNEAVKHLGFAMDGSRSPEDLSAYAQVLASVRDTL 122

Query: 125 VTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           +  AN  D  G YLFSG   +  P+         ++ +F+  L     E   +++     
Sbjct: 123 LQSANTRDSSGNYLFSGTAITTAPIRFDPAAPVGSRYTFEGNL-----EKQTAVVGDGVT 177

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           EV++ +  +M D +  L++  +                           + +AN N    
Sbjct: 178 EVANESLAEMADGLNALDEAIAKMS------------------------EPNANPNDPAY 213

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           RD                       +  +   T++  L+ +  +   +G ++  +     
Sbjct: 214 RD-----------------------VLGRATDTIESVLASVNAKIGRMGSTQARLQMLDE 250

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   + +        +          + +  ++ S  +  ++ +L++LN L
Sbjct: 251 LHESAQIVGNQAALDVGKISPEEVFTDYQSYMVALQASQKLYAEVTQLTLLNVL 304


>gi|167628880|ref|YP_001679379.1| flagellar hook-associated protein 3, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591620|gb|ABZ83368.1| flagellar hook-associated protein 3, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 309

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 104/332 (31%), Gaps = 46/332 (13%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             K   ++ TG+              I+        + + + + S +   L  S + LS 
Sbjct: 23  MDKTQFQLSTGRQYRLPEDAPMENVQIMTHRSTLVQVNKYMKNTSEIQTWLENSDSALSE 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           +  ++Q +   ++    G T        A  + +  +     +N T  G+Y+F+G N+  
Sbjct: 83  VNNVLQRVRELILQADNGTTTTEAKKATADEISELNDHLKNVSNTTIAGRYIFAGTNTDR 142

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
            P          AK +      G+ + N  +      ++  ++ A  M      +  +  
Sbjct: 143 PP---------CAKDT-----NGYWKWNGNNGDINVEIDAKAVVA--MNSKGTNVFVR-- 184

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGA 265
           +D  W                              + + + +       +  +       
Sbjct: 185 NDFNWPG---------------------SPVPEPEKNLFNFLDSLTKTLKDANTTEDLDT 223

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
              +T K L        G+ E+RA +G     I+  +  L+     I   +S     +  
Sbjct: 224 YLAITDKFLD-------GVNEERASVGARANRIDFTKSRLEEFQLHITEALSDREDADMA 276

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  +    N    +     ++ + S++++L
Sbjct: 277 QVYTNMRMQENVFRAALSAGARIIQPSLVDFL 308


>gi|32267194|ref|NP_861226.1| flagellar hook-associated protein FlgL [Helicobacter hepaticus ATCC
           51449]
 gi|32263247|gb|AAP78292.1| flagellar hook-associated protein FlgL [Helicobacter hepaticus ATCC
           51449]
          Length = 855

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 18/194 (9%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  +      +MN     +    + ++ ++ +G    YG Q  +     L+ E EK 
Sbjct: 1   MRVTFGTKY---NQMNYYQGTMQSKLMDMNTKIASGLKIQYGYQDSSVFNQNLKLEYEKI 57

Query: 61  HIAERLH-SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
           ++ + +   N   T  L+ +   LS + +  +     L+               A  L  
Sbjct: 58  NLDQGIDVGNDAYTSTLN-TDKALSELSQTAEQFNTKLIQAANDIHSPTSREAIARDLEK 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
             E  +  AN +  G++LF+G N   +P    F  D   K + + +         ++L++
Sbjct: 117 LKEHMINIANTSIGGEFLFAGSNVKIRP----FDPDGTYKGNNETL---------EALVS 163

Query: 180 GQHLEVSSMNAQQM 193
             +    ++  +++
Sbjct: 164 NNNPIPYNITGEEL 177



 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 74/234 (31%), Gaps = 29/234 (12%)

Query: 142 NSSEKPLNGY---FTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
           N S +P+  Y    T++ L  ++     +  L++   ++      +     + +M    +
Sbjct: 633 NYSNQPMEHYLALQTQNGLPTQAGKSAYEALLKQTKGNVSVYLSYDGRIEISDEMRSVSR 692

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM---------------RGI 243
                            NAS  +   +        ++ N N                 GI
Sbjct: 693 MKF-----------MMYNASSSDFSEQSIHNHRASLTFNANNALVIDQPDVDFFRSLDGI 741

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            + +   V   +   +  T   RN   +  +         I +  A+ G   ++      
Sbjct: 742 IEAVRAGVYRPDAYGEEYTSEMRNKGIQNGIELFGHLSDHIEKMIALNGAHSRSFENTIR 801

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +     I++  S  IG +    +   S L          T+++ ++S++NYL
Sbjct: 802 RNEVLRVQIESIKSDVIGTDIAQTYNHFSNLTTNYNAVLASTSRINQMSLVNYL 855


>gi|304397211|ref|ZP_07379090.1| flagellar hook-associated protein 3 [Pantoea sp. aB]
 gi|304355360|gb|EFM19728.1| flagellar hook-associated protein 3 [Pantoea sp. aB]
          Length = 321

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 107/349 (30%), Gaps = 36/349 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ IFE+      +     +K+ E++ +G+            +  +   Q +    + 
Sbjct: 3   ISTNMIFEQQVRGITDSQASWLKVGEQLSSGRRVTNPSDDPIAASRAVVLTQTQQQGKQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +   + LS     L  +   +    G +V    G   ++     A  L       +
Sbjct: 63  ALARTFAEQGLSLEDNTLKGVTNGIIAAQGLIVNGSTGTLSDDDRGSIATQLEGIRAQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G+Y+F+G  +   P               + + Q      + ++       
Sbjct: 123 NQANSKDANGRYIFAGYKTDSAPFVDTAGTGVSYTGGNEAITQKVDTSRTMTVAHTGDSI 182

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
             S+                                         E    ++  N+  + 
Sbjct: 183 FMSITGN-----------------------------------ATKEPDGSASETNVFTML 207

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D    A+   +  +   T         K    +   L+ + +  + +G     I+     
Sbjct: 208 DSAIAALKVPQDNADAATKQTFQDAMDKTNRGLGNALNNVSKVVSEIGTQLGEIDTLNAQ 267

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             +++ I ++ +S  + V+   A +  +     ++ SY   T + K+S+
Sbjct: 268 GDDRSVIYNSQMSDLVNVDLTEAASSYTMQQTALQASYKTFTDMSKMSL 316


>gi|126444065|ref|YP_001061253.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           668]
 gi|126223556|gb|ABN87061.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei 668]
          Length = 304

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 117/354 (33%), Gaps = 54/354 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+++     M  + ++     +     M T +              +    Q    + + 
Sbjct: 3   ITSNQYHSIMAQVNRQATAGLMDTQIRMATEKRILRPSDDPTGAMRLAMLVQADAMLDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQD-MVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             + +++  RL  S+  +S +   +Q+  V  L   ++G          A +L    ++ 
Sbjct: 63  RATGAMLNSRLQHSERVMSGVVDQLQNEAVKHLGFAMDGSRSPEDLSAYAQVLASVRDTL 122

Query: 125 VTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           +  AN  D  G YLFSG   +  P+         ++ +F+  L     E   +++     
Sbjct: 123 LQSANTRDSSGNYLFSGTAITTAPIRFDPAAPVGSRYTFEGNL-----EKQTAVVGDGVT 177

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           EV++ +  +M D +  L++  +                           + +AN N    
Sbjct: 178 EVANESLAEMADGLNALDEAIAKMS------------------------EPNANPNDPAY 213

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           RD                       +  +   T++  L+ +  +   +G ++  +     
Sbjct: 214 RD-----------------------VLGRATDTIESVLASVNAKIGRMGSTQARLQMLDE 250

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   + +        +          + +  ++ S  +  ++ +L++LN L
Sbjct: 251 LHESAQIVGNQAALDVGKISPEEVFTDYQSYMVALQASQKLYAEVTQLTLLNVL 304


>gi|302874577|ref|YP_003843210.1| flagellar hook-associated protein 3 [Clostridium cellulovorans
           743B]
 gi|307690812|ref|ZP_07633258.1| flagellar hook-associated protein 3 [Clostridium cellulovorans
           743B]
 gi|302577434|gb|ADL51446.1| flagellar hook-associated protein 3 [Clostridium cellulovorans
           743B]
          Length = 321

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/352 (11%), Positives = 113/352 (32%), Gaps = 33/352 (9%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   +  +          +  K+  ++ TG+          +V   ++ + + +   + 
Sbjct: 3   ITNKMMSNKYLFNLNNNLNNMTKVQNQLSTGKQFSKPSDNPLKVAKSMQIDSDISSNEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    T  L      L+++  ++      LV        +++       L +    F 
Sbjct: 63  KANIQGTTNYLDVVDTTLATLNDVLVSFEEKLVSAGNAAYGSDERNAINQELNEKVAHFA 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N + +G Y+F G   ++KP+      +                       A      
Sbjct: 123 QALNTSFQGTYVFGGTRGTDKPVKTVVDAN----------------GQYTIQYANSDGTD 166

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           + + A +MT    + + + S                ++Y     E ++ +       +  
Sbjct: 167 NPITATEMTQVSSKYKVEVSQGV------------TMEYNTTAPEILNFNGGTTNNVMDL 214

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
              +          ++       LT + L+ +Q   + I++ R+ +G  +  ++      
Sbjct: 215 FKNILNNLNSSDPADINK-----LTTENLTDIQAAHNNILKARSTVGAMQNRMDSALSKN 269

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +++   +   +S +  V+      Q + L      +     K+ + ++L+YL
Sbjct: 270 KDETLNLKEILSSNEDVDVAETTMQYAMLQTTYIAALQTGAKVIQPTLLDYL 321


>gi|299536008|ref|ZP_07049327.1| flagellar hook-associated protein 3 [Lysinibacillus fusiformis ZC1]
 gi|298728613|gb|EFI69169.1| flagellar hook-associated protein 3 [Lysinibacillus fusiformis ZC1]
          Length = 331

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/337 (10%), Positives = 110/337 (32%), Gaps = 34/337 (10%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             KL +++ +G+               + + ++   + +   + + V   + T+   L+ 
Sbjct: 23  MSKLQDQLNSGKKITRPSDDPVIAVKGMGYRRDLGRVEQYTRNMNEVNNWIDTTDESLNQ 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           + + ++ +   ++         ++       +    +     +N     +Y+FSG N+ +
Sbjct: 83  VGEQMKRVRELVIQAANDTNTPDERAKIKKEIDQIRQQIQDVSNTKIGDRYIFSGTNTDK 142

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI----KQLE 201
                    ++   K  +   Q +   N  S  A +    ++    ++ D I        
Sbjct: 143 PLFVDANPPNADGSKIINADYQLYDGTNIISTAADKLTAPNADVQIEVYDGIQLQVNAPG 202

Query: 202 DKFSDD-EYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN 260
                + +      SN  D         +E I  +                    F S +
Sbjct: 203 ADLFGNIDSLMGKISNLLDPERVPGPATSEEISKA-----------------LGGFTSNS 245

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
            +D             +    + I+E +A +G  +  +      L  +   +   +S + 
Sbjct: 246 KSDD------------ITNIHNKILETQADMGARQNRVELMENRLSLREISVTKQLSNNE 293

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            V+   A  ++ T  +  + +  +  ++ + ++++++
Sbjct: 294 DVDYSKAITEMVTSESIHQAALSVGARIIQQTLVDFI 330


>gi|119469957|ref|ZP_01612762.1| putative flagellar synthesis; flagellar regulon; hook-associated
           protein [Alteromonadales bacterium TW-7]
 gi|119446667|gb|EAW27940.1| putative flagellar synthesis; flagellar regulon; hook-associated
           protein [Alteromonadales bacterium TW-7]
          Length = 410

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/412 (14%), Positives = 135/412 (32%), Gaps = 64/412 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S + +++          ++  K  E++ T +         A  +  L++        + 
Sbjct: 3   LSNNLMYQSSLNSILNNQQNVSKAQEQVNTQKRVLTASDDPAAASRALQYTDRIQSNEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +++  RL+  +  L +++  ++      +    G          A  ++    + +
Sbjct: 63  SKNITMLNSRLNIEEGALENIKSALERAHTLTIQSGNGVYSAADREGLAEEIKALQSTVL 122

Query: 126 TFANM-TDEGQYLFSGI--NSSEKPLNGYFT---------------KDSLAKKSFDQMLQ 167
              N  T++G+Y+FSG   N+    L+                    + +  KS D    
Sbjct: 123 DLMNSKTEDGKYIFSGYQDNTQTYSLDSSTGLYVYGGDQGQHMIKIAEGVDIKSSDNGFD 182

Query: 168 GFLEENSKSLLAGQHLEVSS-MNAQ--------QMTDFIK---QLEDKFSDDEYWANNWS 215
            F + +++  +      VS  + +         Q   F K     +   +      N  +
Sbjct: 183 AFEKVDARLDVVSNDGVVSGGITSSKVYVTEQGQFDTFHKQNYNPDPSAAAGANTLNVIT 242

Query: 216 NASDHNIKYRIKDTEGIDVSANVNMRGIRDIMF--------------------------- 248
            A   N  Y+I+    I  + N+N   I+                               
Sbjct: 243 TAGSPN-TYQIEQAGTILATGNINDSVIKFAGMEISVTPVATGQIDITLEAPKKENVLNS 301

Query: 249 VAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNK 308
           ++ +     +  LT+     +    L  +    + +   +A LG     IN     LQ+ 
Sbjct: 302 MSELIAGLTNPALTEEEFEQVIADSLVQISNAKNNVSLTQAGLG---GRINTAEKVLQSN 358

Query: 309 NNI-IDTYI--SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++ I+     S  + ++   A  +L+     ++ S     +L  LS+ +YL
Sbjct: 359 TDLDINNKSARSDLVDIDITEAITELTKQETALQASQATFGRLANLSLFDYL 410


>gi|167623368|ref|YP_001673662.1| flagellar hook-associated protein FlgL [Shewanella halifaxensis
           HAW-EB4]
 gi|167353390|gb|ABZ76003.1| flagellar hook-associated protein 3 [Shewanella halifaxensis
           HAW-EB4]
          Length = 396

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/396 (15%), Positives = 141/396 (35%), Gaps = 46/396 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ +F +      +    + ++ E++ TG+  +           I    Q+ + + + 
Sbjct: 3   ISTAQMFHQNINSVTQKQSQTSQIIEQLSTGKRVNTAGDDPVAAAGINNLNQKNSVVDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           L +      RLS S++ L S   +   +   ++  + G   ++     A  +R S E  +
Sbjct: 63  LKNIDYAKNRLSISESKLGSAATLASSVREQVLRAVNGSLTDSDRQTVADEMRGSLEELM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G YLF G N+  +P    F     A    D  ++  +  +  ++ A    +
Sbjct: 123 AIANSKDESGNYLFGGFNTGSQPFE--FDASGNAVYHGDSGVRESVVASGTTIGANIPGD 180

Query: 185 VSSMNAQQ-----MTDFIKQLEDKFSDDEY-WANNWSNASDHNIKYRIKDTEGIDVSANV 238
           ++ MNA         +++     +F+ +     +  ++  D      + +   +  S N 
Sbjct: 181 LAFMNAANGLGDYSVNYLATQTGEFNVESAKVTDPATHVPDTYTFNMVGNDLEVRDSTNA 240

Query: 239 --------------------------NMRGIRDIMFVAVIGTEFLSKN-----------L 261
                                        G    M  A   +   + N           +
Sbjct: 241 VVTTVTAFDPNTPVSFNGIEVKLDGKPAPGDSFTMEHAPEVSLLDTINSAIALIEDPNKV 300

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
              A      +ML+ +  G++ +   R V G S K+++      + +  + ++ +S    
Sbjct: 301 NTPAGKSELAQMLNNIDSGMNQLDLARGVAGNSLKSLDSYAATHEEEQIVNNSALSMLED 360

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++   A  QL      +  +  + TK+  +S+ +Y+
Sbjct: 361 LDYAEAITQLEQQQQALNAASSVFTKVGTVSLFDYI 396


>gi|187934470|ref|YP_001885010.1| flagellar hook-associated protein 3 [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722623|gb|ACD23844.1| flagellar hook-associated protein 3 [Clostridium botulinum B str.
           Eklund 17B]
          Length = 402

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/400 (13%), Positives = 130/400 (32%), Gaps = 48/400 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+TS +         +      KLH ++ +G+          +V+  ++   E     + 
Sbjct: 3   ITTSMLASNYQSNMTKNLNHMQKLHNQLSSGKEISRPSDNPYKVSRTMQMYMEIGANKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   ++  L T+   L+ M+ +   +   LV    G    ++       +++      
Sbjct: 63  NENIKDISNWLDTTDTSLNQMENVFARVRELLVSAGSGAYGPDEKKAIQDEIKERVNEMG 122

Query: 126 TFANMTDEGQYLFSGINSSEKPL------NGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
              N   +G Y+F G  S+ KP+         +        S           N  +   
Sbjct: 123 QILNTNFDGVYIFGGTKSTSKPVIINSNGELCYADKDGNAVSKTATGVKIDLTNPITDGG 182

Query: 180 GQHLEVSSMNAQQMTDFIKQ-------------------------LEDKFSDDEYWANNW 214
            + ++    +   +   I                            E+     E     +
Sbjct: 183 TKSIKGMEKDGNNIKMIITDTNTTPPSETPIAIDLSAIGSGTPPETEESLFKKELKGQGF 242

Query: 215 SNASDHNIK---------YRIKDTEGIDVS----ANVNMRGIRDIMFVAVIGTEFLSKNL 261
           +++    +           +I     ++VS     N N   +  +          L+K +
Sbjct: 243 TDSDIGRLTGMVPSFDALDQISSELNVEVSQGVLINYNKNAVDLLEGNGTNIMSTLNKII 302

Query: 262 TD----GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
           T+    G ++V+T + L  V   +  +++ RA +G  +  +   +   +++N  +   +S
Sbjct: 303 TNLDEGGDKSVITGECLGEVDDIIKNLLQHRAEVGAMQNRMESAQDKNESENLDMTDILS 362

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           K+  ++      Q S +      +     K+   +IL+YL
Sbjct: 363 KTEDIDFTEKTIQYSIMQTVYMAALQTGAKILPATILDYL 402


>gi|296330252|ref|ZP_06872733.1| flagellar hook-associated protein FlgL [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676143|ref|YP_003867815.1| flagellar hook-filament junction [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152520|gb|EFG93388.1| flagellar hook-associated protein FlgL [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414387|gb|ADM39506.1| flagellar hook-filament junction [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 298

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/346 (11%), Positives = 102/346 (29%), Gaps = 58/346 (16%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
              +  +    +K   KL  ++ +G+               L++  + + + +   + S 
Sbjct: 10  QNSLRYIGSSYSK-LDKLQSQISSGKKISKASDDPVVAMKSLKYNNQLSQVQQYQSNASQ 68

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
               L  ++ +++    I+  +    V          +       ++   E  +  AN  
Sbjct: 69  AFTWLENTETNITEGIDILSKVRELAVQAQSDTNGEAERQAIGVEVKQLKEQLLNIANTQ 128

Query: 132 DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
             G+Y+F+G NS + P+                               G      S  A 
Sbjct: 129 VNGRYIFNGTNSDKPPVTD----------------------------NGDGTYTISDTAD 160

Query: 192 QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAV 251
            + +    +  K + D   A   ++ S  N+   +   E    S +++            
Sbjct: 161 VVVNISNNMTLKVNSDPKSAFGGTSESGQNVFEMLDSFEKALSSGSIDG----------- 209

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
                                +L  + Q   G+  +R+ LG     +      L  +   
Sbjct: 210 ------------------MDSVLDDIDQFSGGMSAERSDLGARYNRLELVNTRLSAQEET 251

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +S +  VE      +     +    +  +  ++ + +++++L
Sbjct: 252 ATKVLSDNEDVELEEIITEFIAQQSVHRATLAVNAQIVQPTLIDFL 297


>gi|188590093|ref|YP_001920170.1| flagellar hook-associated protein 3 [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251778367|ref|ZP_04821287.1| flagellar hook-associated protein 3 [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188500374|gb|ACD53510.1| flagellar hook-associated protein 3 [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082682|gb|EES48572.1| flagellar hook-associated protein 3 [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 402

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 125/407 (30%), Gaps = 62/407 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+TS +                KL  ++ +G+          +V+  ++   E     + 
Sbjct: 3   ITTSMLSSNYKSNMTTNLNHIQKLQNQLSSGKEISRPSDNPYKVSRTMQMYTEIGANKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   ++  L T+   L+ M+ +   +   LV    G    ++       +++      
Sbjct: 63  NENIKDISNWLDTTDTSLNQMENVFARVRELLVTAGNGAYGPDEKKAIQDEIKERVNEMG 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNG-------YFTKDSLAKKSFDQMLQGFLEENSKSLL 178
              N   +G Y+F G  S+ KP+         Y  KD  A  S           N  +  
Sbjct: 123 QILNTNFDGVYIFGGTKSTSKPIMVNSNGELCYADKDGNA-VSKTATGVKIDLTNPITDG 181

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDV--SA 236
             + ++    +   +   I         +     + S              E  +     
Sbjct: 182 GTKSIKGMEKDGNNVKMTITDTNTTPPSETPITIDLSTIGSGT------PPETAESLFKV 235

Query: 237 NVNMRGI--RDIMFVAVIGTEFLS-----------------KNLTDGA------------ 265
            +N +G    DI  +A +   F S                  N    A            
Sbjct: 236 ALNGQGFADSDIGRLAGMVPSFDSLDQIGSELNVEVSQGVLINYNKNAVDLLEGNGTNIM 295

Query: 266 ---------------RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
                          ++V+T + +  V   +  +++ RA +G  +  +   +   +++N 
Sbjct: 296 STLNKIITNLGTGGDQSVITGECIGEVDDIIKNLLQHRAEVGAMQNRMESAQDKNESENL 355

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +   +SK+  ++      Q S +      +   + K+   +IL+YL
Sbjct: 356 DMTDILSKTEDIDFTEKMIQYSIMQTVYMAALQTSAKILPATILDYL 402


>gi|302871569|ref|YP_003840205.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574428|gb|ADL42219.1| flagellar hook-associated protein 3 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 315

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 106/352 (30%), Gaps = 41/352 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +     I   +  K    +  +M  G+   Y           L    + + I + 
Sbjct: 3   ITNNMMVNNFLINLNKNLKRLDDIQYKMAIGKKIRYPSDDPVITARSLRLRTDVSEIEQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       + T+++ L+ + + +Q +    V    G          A  +    +  +
Sbjct: 63  QKNVDDAVSWVDTTESALADINESLQRVRELAVRGANGTNTKEDMAQIAKEVAQIKQHII 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N    G+Y+FSG  +   P+N   +                   ++    +     +
Sbjct: 123 QVGNTNYAGRYIFSGFKTDTAPINSDGSF-----------------SDTGDFSSSGGYSI 165

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                  +  F     +              A+  NI         I    + N   +  
Sbjct: 166 DLSTGNNIIQF-----ELM-----------KANYININKTANQVFYIQGETDENKGNLFK 209

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
           ++   +   +                 +LS + + +  ++ QR  +G  +  +   +  L
Sbjct: 210 VLDNLINALQNGDA--------TTVNSLLSDIDRHIDNVVAQRGDVGALQNRLELIKNRL 261

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            + N    T +S +  V+      QL T  N    +     ++   ++L++L
Sbjct: 262 SDDNVNFTTLLSNNEDVDMAEIIMQLKTAENVYRAALQTGAQILPPTLLDFL 313


>gi|255099396|ref|ZP_05328373.1| flagellar hook-associated protein [Clostridium difficile QCD-63q42]
 gi|255305253|ref|ZP_05349425.1| flagellar hook-associated protein [Clostridium difficile ATCC
           43255]
          Length = 310

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 115/352 (32%), Gaps = 44/352 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST  +        ++  +   K++ ++ T +  +       +   IL  + E   +   
Sbjct: 3   VSTGMMSSSYLNSLQDNLQRLDKVNRQVNTTKEINKLSDNPYKAIKILNSKSEIKTMETY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +       L T+   L  + K++ D+   LV   +G   +++    +    +  +   
Sbjct: 63  VENCKDTGNWLETTDTALDQLGKLLSDIKKTLVASGDGAYSDDELKTLSNETNEKMKEIA 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N T EG+Y+FSG N+   P+      D      F+  L      +S S+   Q + V
Sbjct: 123 NALNATHEGKYIFSGSNTGVPPVECIDNADGSVSLKFNSSLNLNKLNDSLSMDIAQGISV 182

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
              N +  +      +    ++             NI  ++            N      
Sbjct: 183 -DYNVKLSSLGFDPTKTDPFEELN-----------NISKKL-----------ANPDA--- 216

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
                              A   LT   L  ++Q +   +  R++ G     +   +   
Sbjct: 217 ------------------DAIKELTTTCLGDMEQLIENTVNVRSIYGTKANTVEAMKEKN 258

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    +   +S++  ++      QL       + S     KL  +SIL+Y+
Sbjct: 259 DDSLIQLKDILSQNEEIDYGEKLVQLKAAELTYQASLQTGGKLFNVSILDYI 310


>gi|16080593|ref|NP_391420.1| flagellar hook-associated protein FlgL [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311491|ref|ZP_03593338.1| flagellar hook-associated protein FlgL [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315818|ref|ZP_03597623.1| flagellar hook-associated protein FlgL [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320733|ref|ZP_03602027.1| flagellar hook-associated protein FlgL [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325018|ref|ZP_03606312.1| flagellar hook-associated protein FlgL [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|2829830|sp|P96501|FLGL_BACSU RecName: Full=Flagellar hook-associated protein 3; Short=HAP3
 gi|1762339|gb|AAC44947.1| flagellar-hook associated protein 3 (HAP3) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|2636066|emb|CAB15557.1| flagellar hook-filament junction [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 298

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/346 (11%), Positives = 101/346 (29%), Gaps = 58/346 (16%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
              +  +    +K   KL  ++ +G+               L++  + + + +   + S 
Sbjct: 10  QNSLRYIGSSYSK-LDKLQSQISSGKKISKASDDPVVAMKSLKYNTQLSQVQQYKSNASQ 68

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
               L  ++ +++    I+  +    V          +       ++   E  +  AN  
Sbjct: 69  AFTWLENTETNITEGIDILSKVRELAVEAQNDTNGEPERQAIGVEVKQLKEQLLNIANTQ 128

Query: 132 DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
             G+Y+F+G NS + P+                               G      S  A 
Sbjct: 129 VNGRYIFNGTNSDKPPVTD----------------------------NGDGTYTISDTAD 160

Query: 192 QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAV 251
            + +    +  K + D   A   ++ S  N+   +   E    S +              
Sbjct: 161 VVVNISNNMSLKVNSDPKSAFGGTSESGQNVFEMLDSFEKALNSGS-------------- 206

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
              + +   L D             +     G+  +R+ LG     +      L  +   
Sbjct: 207 --LDGMDSVLND-------------IDHFSDGMSAERSDLGARYNRLELVNTRLSAQEET 251

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +S +  VE      +     +    +  +  ++ + +++++L
Sbjct: 252 ATKVLSDNEDVELEEVITEFIAQQSVHRATLAVNAQIVQPTLIDFL 297


>gi|187778687|ref|ZP_02995160.1| hypothetical protein CLOSPO_02282 [Clostridium sporogenes ATCC
           15579]
 gi|187772312|gb|EDU36114.1| hypothetical protein CLOSPO_02282 [Clostridium sporogenes ATCC
           15579]
          Length = 320

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 111/354 (31%), Gaps = 39/354 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +            ++  ++ +++ +G++        A V   ++     +   + 
Sbjct: 3   ITNNMMANSFMTDMNNNLENLDRIRQQLTSGKNFSKPSHDPAGVIRSMQLYSGIDANKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S V   L  +   L  + K +  +   L           +       +     S  
Sbjct: 63  NKNISNVINWLDVTDTALDQVGKQLGKIRDKLEEAGNPGFGETERKALKDEVNGIIASMS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N T +G+Y+FSG   + KP  G     +    S D     ++ ++    L     E 
Sbjct: 123 QTLNTTFDGKYIFSGTRVTGKP-TGVQKDATTKNNSID-----YVNKDGSIPLDPAGDEY 176

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM--RGI 243
                +QM                            +K  I +   ++ +        G 
Sbjct: 177 -----KQME-------------------------QKLKAEISEGVVMEYNVTATEVLEGG 206

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            D+        + L  +        L    L  + + L  ++  RA +G  +  ++  + 
Sbjct: 207 GDLRRFLEDIVKHLDSDDPKEISK-LYGDDLGNIDKALDNVLRIRAEVGAKQNRMDAAKE 265

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  N  +   +S    V     + + + L +    S   + K+ + ++++YL
Sbjct: 266 MNKETNFNMTEILSNIEDVNLVEKNMEYAILQSVYISSLQTSAKVLQPTLMDYL 319


>gi|152990393|ref|YP_001356115.1| flagellar hook-associated protein 3 FliC [Nitratiruptor sp.
           SB155-2]
 gi|151422254|dbj|BAF69758.1| flagellar hook-associated protein 3 FliC [Nitratiruptor sp.
           SB155-2]
          Length = 413

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 57/408 (13%), Positives = 132/408 (32%), Gaps = 57/408 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  +F R      +      +   E+ +G+            +  L+ +     I   
Sbjct: 3   ISTLGVFNRYLSNITKYQNKIERYSNELSSGKKVFVPSDAPVDNSRALQLKSLAKEIDGY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESF 124
           + +  L +  +S ++  L ++ +   D    +V +L  G  D+    I    L++  +  
Sbjct: 63  MRNIDLASNSMSIAETSLKNVSEAALDARVDIVQLLNTGVLDSEDANIFKDYLQNVRDYI 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLN-GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           ++ +N+     YLF G +S   P +   F + S  + S        +            +
Sbjct: 123 ISQSNVRIGSNYLFGGEDSKTVPFDENGFYQGSSVEVSVPVAKATEVVTKFNGENYLSTI 182

Query: 184 EVSSMNAQQMTDFIKQLEDKFS----DDEYWANNWSNASDHNIKYR---IKDTEGI---- 232
           +  ++N ++    + +  D       D E +  +  N+    +      I  TE      
Sbjct: 183 QSGTLNDKKQKIGLVKAIDDIIAIIEDGEIYKLHGKNSELGYLSPNDALISSTETAGTIT 242

Query: 233 --------------DVSANVNMRGIRDIMFVA--------------------VIGTEFLS 258
                         D + + N   +++++                       ++   F  
Sbjct: 243 INYKDVTLNIDYDSDTTDSTNPSTLQELVDAINNAPANNGNITAYTFTDKDGIVRLGFAG 302

Query: 259 KNLTDGARNVLTKKMLSTVQ----------QGLSGIIEQRAVLGISEKNINEERVFLQNK 308
           K         +T  + + +           QG  G+   R ++G+ E+ ++  +   +N 
Sbjct: 303 KETDKDIEVTITGDLQNHLGGFQYILDEFDQGFEGVERHRGMIGVQEQLVDNLKEQHENF 362

Query: 309 NNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
               +   SK    +   A   L       + +     + ++LS+L Y
Sbjct: 363 KVNYNDLASKFEDSDYAEAIVNLEKAKTTYQATLASFMQNKELSLLKY 410


>gi|254294558|ref|YP_003060581.1| hypothetical protein Hbal_2204 [Hirschia baltica ATCC 49814]
 gi|254043089|gb|ACT59884.1| hypothetical protein Hbal_2204 [Hirschia baltica ATCC 49814]
          Length = 300

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 124/354 (35%), Gaps = 55/354 (15%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           + I+T+ + +   I  ++  K   +   +  +   +      G++  +++   +   +I 
Sbjct: 2   SRITTAMVSQNALIDLQKSQKVLFEASNQTASQTKATDLKGYGSQTHTLVSSNRMIANIQ 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
            R+ + + +  RLS   A L+  +++++D+     ++L+  + +    I+A  + +++  
Sbjct: 62  SRIDNAAELDARLSMQDAVLTHSREVMEDLRS---VILQDISLSGPSSIDAK-IEEAFLV 117

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
                N+   G+ +F G  + + P+      D +A    +   +   +E + ++   Q +
Sbjct: 118 LKDSFNLEISGKSVFGGTRTDKPPVVAASVADLVA-NPIENAFEQGAQEQTVNVDGYQEI 176

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            ++ + A+        L+   +   Y                    E  D          
Sbjct: 177 SLAPVAAEAAEAAFDMLKTLAAGGPY-------------------GELTDAQVTA----- 212

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                                      K  L+     + G+++  A  G ++  I     
Sbjct: 213 --------------------------LKGELAQFDTVIDGLVQLEARNGNTQSRITNAIE 246

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               + N I   + +   V+     A+LS      + S  I   ++ L++L+ L
Sbjct: 247 RQTTQVNAIGATVGEITYVDLAEVAARLSNAQTTYQASASIFNTVRGLTLLDVL 300


>gi|71906398|ref|YP_283985.1| flagellar hook-associated protein FlgL [Dechloromonas aromatica
           RCB]
 gi|71846019|gb|AAZ45515.1| Flagellin, N-terminal [Dechloromonas aromatica RCB]
          Length = 326

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 110/353 (31%), Gaps = 32/353 (9%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++       + L      L  ++ TG+               L   Q  +  A  
Sbjct: 5   ISTQQLYNGGVSGIQRLQSSLYTLQNQIDTGRKIVTPKDDPVGSAQALVVSQANSVNALY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           L + +  T +L+   + L  +   +Q++    V    G   +      A  L +   + +
Sbjct: 65  LKNQASATTKLNGLDSILGGVNDQLQNIYEKAVAAGNGSYSDTDRAAVATELSERLNNLI 124

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G+Y+F+G  S+ +P +      S            +    + + +     +
Sbjct: 125 GLANSQDGTGRYVFAGFQSTTQPFSLSANPAST------TNPSAYSLSPANAYINYNGDD 178

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +       ++ ++                   SD  ++ R       D S N   R + 
Sbjct: 179 GAQTLQVSASESVQTNLPG--------------SDVFMRIR-------DSSGNATGRSVF 217

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D +   V   +    + +          + +++     G+    A     E   N     
Sbjct: 218 DAVQNMVEFLKTPGASASSSRYTTALGDISASIATVSKGLSTVGARASSLESMTNTAGDR 277

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                   +  +S    ++  +A   +S    ++E +        KLS+ +++
Sbjct: 278 ----KLQYEEQLSNLQDLDYASALTAVSQQKLQLEAAQSTFALTSKLSLFDHI 326


>gi|259908805|ref|YP_002649161.1| Flagellar hook-associated protein 3 [Erwinia pyrifoliae Ep1/96]
 gi|224964427|emb|CAX55936.1| Flagellar hook-associated protein 3 [Erwinia pyrifoliae Ep1/96]
 gi|283478786|emb|CAY74702.1| Flagellar hook-associated protein 3 [Erwinia pyrifoliae DSM 12163]
 gi|310767297|gb|ADP12247.1| Flagellar hook-associated protein 3 [Erwinia sp. Ejp617]
          Length = 321

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 121/349 (34%), Gaps = 36/349 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST  I+++     +  N   +K   E+ TG   +            +   Q ++  ++ 
Sbjct: 3   LSTGMIYDQQIQGIQSANSSWLKAGNELATGNRVNKPSDDPVAAAQAVVLSQAQSETSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    T+  ST +  L  +  +V      +V    G          A  L       +
Sbjct: 63  ETARVFATQNQSTEETTLKQVADVVISAQTTVVAASTGTLSGEDRASYATQLEGIRGQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  S + P    FT D+  K ++        ++     +      
Sbjct: 123 NLANSTDGNGRYMFAGYQSDKAP----FTSDAGGKVTYIGGNVPIAQK-----VDASRTL 173

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V++   +Q+ D +     K  D     +N     D  IK                     
Sbjct: 174 VTNHTGKQVFDSLTSDAVKEPDGAASESNIFTILDTAIKS-------------------- 213

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                 +  +   +   T  A   +  K+   ++  L+ +   R+ +G + + ++     
Sbjct: 214 ------LKVSLTGADKATVDADGEVMAKVNRGLRNVLNNVSSVRSEIGTNLQELSNLDSK 267

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             +    + T +S  +G +   A ++ +     ++ SY +  ++ KLS+
Sbjct: 268 GDDTALSLKTQMSSLVGADTTEAISEYTLQQAALKASYTVFQQMSKLSL 316


>gi|28211375|ref|NP_782319.1| flagellar hook-associated protein 3 [Clostridium tetani E88]
 gi|28203816|gb|AAO36256.1| flagellar hook-associated protein 3 [Clostridium tetani E88]
          Length = 316

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 114/354 (32%), Gaps = 43/354 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   +             +   + +++ +G+          +V   ++   E +   + 
Sbjct: 3   ITNKMLANNFLTDMTTNLNNLQTIQQQLTSGKEIRRPSDDPIKVARAMQLHSEISANQQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L  +   L  + +  Q +   LV        +++       +++      
Sbjct: 63  NENIKDTLSWLEQTDTALGQLGEQSQRVRELLVSAGNAAYGSDERKKINDEVKEIVGQMS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ--MLQGFLEENSKSLLAGQHL 183
              N + +G+Y+F G   + KP+N    K   A++   +    +  ++E   + ++    
Sbjct: 123 QTLNASFDGRYIFGGTRGTSKPVNVKDNKLVYAERDGSELGAAEKIMKEKLVTEISQGVR 182

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
              ++ A +   F                                       A  N R +
Sbjct: 183 IEYNITATEAMQFKD-------------------------------------AKGNDRDL 205

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           RDI+   V   E       D     +TK  L  +   +   ++ R+ +G     +     
Sbjct: 206 RDILEKIVEHLESPD----DDKIKEITKGDLEALDAVMDNTLKLRSQVGAKGNRMESALE 261

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             + +N  +   +SK+  ++      + +  I+    +   + ++ + ++++Y+
Sbjct: 262 KNKEENFNLKEILSKTEDIDLAEKSMEFAVAISVYMSALQTSARVLQPTLMDYV 315


>gi|83594185|ref|YP_427937.1| hypothetical protein Rru_A2853 [Rhodospirillum rubrum ATCC 11170]
 gi|83577099|gb|ABC23650.1| hypothetical protein Rru_A2853 [Rhodospirillum rubrum ATCC 11170]
          Length = 515

 Score = 66.7 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 48/143 (33%), Gaps = 6/143 (4%)

Query: 221 NIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVL------TKKML 274
           + + RI D   I    N         +    I  +   ++     +  L           
Sbjct: 373 STQQRIDDDRSITTGINAKNPAFEKALRAMAIIAQGDLQSNPGRVQQALNLLGDSVDHSP 432

Query: 275 STVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTL 334
               +    + +   V+G+++  +       Q+    +         V++  A  +LS  
Sbjct: 433 QNTSELSGDLTDVAQVIGLNQATVKRTSTEQQSYLTFLQNRSGDIETVDKTEALVRLSDD 492

Query: 335 INKIEMSYMITTKLQKLSILNYL 357
              ++ S+   +++  LS+++YL
Sbjct: 493 AQALQASFAAFSRITSLSLVSYL 515



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 85/259 (32%), Gaps = 25/259 (9%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           + T S    +      + K       ++ T Q S     L A    ++  E E + +++ 
Sbjct: 8   VGTYSQRSSLVGQMLAIQKRLTDTQTQVNTEQKSQDYTGLSADAFRLVSMENESSRVSQF 67

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLE-------GKTDNNKFPINAGMLR 118
           + +N++V+ RL  +   + ++ K V+D    L +  +          +  K         
Sbjct: 68  MKTNTVVSSRLKVASTSVEAVDKTVRDFRSQLSLFSQVDLTKPLTDEETTKLKDLQNRAF 127

Query: 119 DSYESFVTFANMTDEGQYLFSGINSSEKPLN----------------GYFTKDSLAKKSF 162
           ++ +S   + N   +G YLF+G  +   P++                      S A    
Sbjct: 128 EALKSTEYYLNNQHDGSYLFAGGRTDTPPVDIPYNTLEEFQNVFNGKTVTYPQSRAANLA 187

Query: 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNI 222
           D  + G +     +L        ++  A    D  K       D  + A N + AS   +
Sbjct: 188 DAKVAGTMTVAPGALATDPGTITAA--AGSFIDATKTETGVGGDLTFTAANNTVASPQFV 245

Query: 223 KYRIKDTEGIDVSANVNMR 241
              I   + I V       
Sbjct: 246 GTTIAAGDVIRVDMGATGP 264


>gi|225166311|ref|ZP_03728000.1| Flagellin and related hook-associated protein-like protein
           [Opitutaceae bacterium TAV2]
 gi|224799448|gb|EEG17988.1| Flagellin and related hook-associated protein-like protein
           [Opitutaceae bacterium TAV2]
          Length = 311

 Score = 66.7 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 6/202 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+T   ST +   R+      L++   +L  ++ TGQ         A V  IL  + E+ 
Sbjct: 1   MRT---STLTTTHRLIDQLTRLSERQTRLQNQVATGQRVTVPGDDPAAVGRILSNQMEQR 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A+  ++ S   +    + + LS ++ I     G L  L  G T  +     A  L   
Sbjct: 58  QVAQYQNNASKALEYSEATYSTLSDLKGISDRA-GELATLGAGATSTDAMTAYAVELDQL 116

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +  +  AN    G YL SG  +  +P       D     +++          + S  + 
Sbjct: 117 IQQALDLANTRFSGDYLLSGTATDTQPFTLATDADGNTTITYEG--NTDQRTIALSETSH 174

Query: 181 QHLEVSSMNAQQMTDFIKQLED 202
                +      +  F+ +L D
Sbjct: 175 LAPGTTGDTNHAIATFLNRLID 196


>gi|167576669|ref|ZP_02369543.1| flagellar hook-associated protein FlgL [Burkholderia thailandensis
           TXDOH]
          Length = 304

 Score = 66.7 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 119/354 (33%), Gaps = 54/354 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+++     M  + ++     +     M T +              +    Q    + + 
Sbjct: 3   ITSNQYHSIMAQVNRQATAGLMDTQIRMATEKRILRPSDDPTGAVRLALLVQADATLDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQD-MVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             + +++  RL  S+  +S +   +Q+  V  L + ++G          A +L    ++ 
Sbjct: 63  RATGAMLNNRLQHSERVMSGIVDQLQNEAVKHLGLAMDGSRSPEDLSAYAQVLASVRDTL 122

Query: 125 VTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           +  AN  D  G YLFSG   +  P+       + ++ +F+  L     E   +++     
Sbjct: 123 LQSANARDSSGNYLFSGTAITTAPIRFDPAAPAGSRYTFEGNL-----EKQTAVVGDGVT 177

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           EV++ N  +M D +  L++  +                           +  AN N    
Sbjct: 178 EVANDNLAEMADALNALDEAIAKMS------------------------EPDANPNDPAY 213

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           RD                       +  ++  T++  L+ +  +   +G ++  +     
Sbjct: 214 RD-----------------------VLGRVTDTIESVLASVNAKIGQMGSAQARLQMLDE 250

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   + +        +          + +  ++ S  +  ++ +L++LN L
Sbjct: 251 LHESAQIVGNQAALDVGKISPEEVFTDYQSYMVALQASQKLYAEVTQLTLLNVL 304


>gi|321313087|ref|YP_004205374.1| flagellar hook-associated protein FlgL [Bacillus subtilis BSn5]
 gi|320019361|gb|ADV94347.1| flagellar hook-associated protein FlgL [Bacillus subtilis BSn5]
          Length = 298

 Score = 66.7 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 104/346 (30%), Gaps = 58/346 (16%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
              +  +    +K   KL  ++ +G+               L++  + + + +   + S 
Sbjct: 10  QNSLRYIGSSYSK-LDKLQSQISSGKKISKASDDPVVAMKSLKYNTQLSQVQQYKSNASQ 68

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
               L  ++ +++    I+  +    V         ++       ++   E  +  AN  
Sbjct: 69  AFTWLENTETNITEGIDILSKVRELAVEAQNDTNGESERQAIGVEVKQLKEQLLNIANTQ 128

Query: 132 DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
             G+Y+F+G NS + P+                               G      S  A 
Sbjct: 129 VNGRYIFNGTNSDKPPVTD----------------------------NGDGTYTISDTAD 160

Query: 192 QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAV 251
            + +    +  K + D   A   ++ S  N+                             
Sbjct: 161 VVVNISNNMSLKVNSDPKSAFGGTSESGQNV---------------------------FE 193

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
           +   F  K L  G+ + +   +L  +     G+  +R+ LG     +      L  +   
Sbjct: 194 MLDSF-EKALNSGSLDGM-DSVLDDIDHFSDGMSAERSDLGARYNRLELVNTRLSAQEET 251

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +S +  VE      +     +    +  +  ++ + +++++L
Sbjct: 252 ATKVLSDNEDVELEEVITEFIAQQSVHRATLAVNAQIVQPTLIDFL 297


>gi|147678446|ref|YP_001212661.1| flagellar hook-associated protein FlgL [Pelotomaculum
           thermopropionicum SI]
 gi|146274543|dbj|BAF60292.1| flagellin and related hook-associated proteins [Pelotomaculum
           thermopropionicum SI]
          Length = 300

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 93/309 (30%), Gaps = 55/309 (17%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
            T ++          +   + S     + T+++ L ++   +Q      V    G  D  
Sbjct: 46  ATRVVTLNSVLKQHDQYEQNISDAKNWIETTESTLGNVTDALQRAREQAVYGANGTLDQT 105

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQG 168
                A  + + +++ V  AN    G+Y+F G  ++ KP            K  +   + 
Sbjct: 106 SREAIAQEIDNIFDNIVQLANTNFAGRYIFGGTKTTTKPFESDGEYKGNEGKEGELKWE- 164

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
            + +  + ++     +V    +    + I  +                   +N++  ++ 
Sbjct: 165 -ISQKVEMIVNIDGKKVFGDTSAAGDNGIFTVL------------------NNLRAHLRS 205

Query: 229 TEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
            +                                      ++   L  + + ++GI+  R
Sbjct: 206 GDT-----------------------------------QAVSNTDLGELDRVINGILNLR 230

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           A LG     +         +    +  +SK   V+        S   N  + +     ++
Sbjct: 231 ASLGAKANRLETATSQSGGERTNYEALLSKLNDVDLAKVVTDFSMQENVYQAALSTGARI 290

Query: 349 QKLSILNYL 357
              S++N+L
Sbjct: 291 ILPSLVNFL 299


>gi|83716911|ref|YP_438396.1| flagellar hook-associated protein FlgL [Burkholderia thailandensis
           E264]
 gi|167614844|ref|ZP_02383479.1| flagellar hook-associated protein FlgL [Burkholderia thailandensis
           Bt4]
 gi|257141429|ref|ZP_05589691.1| flagellar hook-associated protein FlgL [Burkholderia thailandensis
           E264]
 gi|83650736|gb|ABC34800.1| flagellar hook-associated protein 3, putative [Burkholderia
           thailandensis E264]
          Length = 304

 Score = 66.3 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 119/354 (33%), Gaps = 54/354 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+++     M  + ++     +     M T +              +    Q    + + 
Sbjct: 3   ITSNQYHSIMAQVNRQATAGLMDTQIRMATEKRILRPSDDPTGAVRLALLVQADATLDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQD-MVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             + +++  RL  S+  +S +   +Q+  V  L + ++G          A +L    ++ 
Sbjct: 63  RATGAMLNNRLQHSERVMSGIVDQLQNEAVKHLGLAMDGSRSPEDLSAYAQVLASVRDTL 122

Query: 125 VTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           +  AN  D  G YLFSG   +  P+       + ++ +F+  L     E   +++     
Sbjct: 123 LQSANARDSSGNYLFSGTAITTAPIRFDQAAPAGSRYTFEGNL-----EKQTAVVGDGVT 177

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           EV++ N  +M D +  L++  +                           +  AN N    
Sbjct: 178 EVANDNLAEMADALNALDEAIAKMS------------------------EPDANPNDPAY 213

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           RD                       +  ++  T++  L+ +  +   +G ++  +     
Sbjct: 214 RD-----------------------VLGRVTDTIESVLASVNAKIGQMGSAQARLQMLDE 250

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   + +        +          + +  ++ S  +  ++ +L++LN L
Sbjct: 251 LHESAQIVGNQAALDVGKISPEEVFTDYQSYMVALQASQKLYAEVTQLTLLNVL 304


>gi|254973893|ref|ZP_05270365.1| flagellar hook-associated protein [Clostridium difficile QCD-66c26]
 gi|255091278|ref|ZP_05320756.1| flagellar hook-associated protein [Clostridium difficile CIP
           107932]
 gi|255312937|ref|ZP_05354520.1| flagellar hook-associated protein [Clostridium difficile QCD-76w55]
 gi|255515696|ref|ZP_05383372.1| flagellar hook-associated protein [Clostridium difficile QCD-97b34]
 gi|255648790|ref|ZP_05395692.1| flagellar hook-associated protein [Clostridium difficile QCD-37x79]
 gi|260682010|ref|YP_003213295.1| flagellar hook-associated protein [Clostridium difficile CD196]
 gi|260685608|ref|YP_003216741.1| flagellar hook-associated protein [Clostridium difficile R20291]
 gi|306518907|ref|ZP_07405254.1| flagellar hook-associated protein [Clostridium difficile QCD-32g58]
 gi|260208173|emb|CBA60495.1| flagellar hook-associated protein [Clostridium difficile CD196]
 gi|260211624|emb|CBE01863.1| flagellar hook-associated protein [Clostridium difficile R20291]
          Length = 310

 Score = 66.3 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 115/352 (32%), Gaps = 44/352 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST  +        ++  +   K++ ++ T +  +       +   IL  + E   +   
Sbjct: 3   VSTGMMSSNYLNSLQDNLQRLDKVNRQVNTTKEINKLSDNPYKAIKILNSKSEIKTMETY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +       L T+   L  + K++ D+   LV   +G   +++    +    +  +   
Sbjct: 63  VENCKDTGNWLETTDTALDQLGKLLSDIKKTLVASGDGAYSDDELKTLSNETNEKMKEIA 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N T EG+Y+FSG N+   P+      D      F+  L      +S S+   Q + V
Sbjct: 123 NALNATHEGKYIFSGSNTGVPPVECIDNADGSVSLKFNSSLNLNKLNDSLSMDIAQGISV 182

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
              N +  +      +    ++             NI  ++            N      
Sbjct: 183 -DYNVKLSSLGFDPTKTDPFEELN-----------NISKKL-----------ANPDA--- 216

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
                              A   LT   L  ++Q +   +  R++ G     +   +   
Sbjct: 217 ------------------DAIKELTTTCLGDMEQLIENTVNVRSIYGTKANTVEAMKEKN 258

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    +   +S++  ++      QL       + S     KL  +SIL+Y+
Sbjct: 259 DDSLIQLKDILSQNEEIDYGEKLVQLKAAELTYQASLQTGGKLFNVSILDYI 310


>gi|291486093|dbj|BAI87168.1| flagellar hook-associated protein FlgL [Bacillus subtilis subsp.
           natto BEST195]
          Length = 298

 Score = 66.3 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 103/346 (29%), Gaps = 58/346 (16%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
              +  +    +K   KL  ++ +G+               L++  + + + +   + S 
Sbjct: 10  QNSLRYIGSSYSK-LDKLQSQISSGKKISKASDDPVVAMKSLKYNTQLSQVQQYKSNASQ 68

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
               L  ++ +++    I+  +    V          +       ++   E  +  AN  
Sbjct: 69  AFTWLENTETNITEGIDILSKVRELAVEAQNDTNGEAERQAIGVEVKQLKEQLLNIANTQ 128

Query: 132 DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
             G+Y+F+G NS + P+                               G      S  A 
Sbjct: 129 VNGRYIFNGTNSDKPPVTD----------------------------NGDGTYTISDTAD 160

Query: 192 QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAV 251
            + +    +  K + D   A   ++ S  N+                             
Sbjct: 161 VVVNISNNMSLKVNSDPKSAFGGTSESGQNV---------------------------FE 193

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
           +   F  K L  G+ + +   +L  +     G+  +R+ LG     +      L  +   
Sbjct: 194 MLDSF-EKALNSGSLDGM-DNVLDDIDHFSDGMSAERSDLGARYNRLELVNTRLSAQEET 251

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +S +  VE      +     +    +  +  ++ + +++++L
Sbjct: 252 ATKVLSDNEDVELEEVITEFIAQQSVHRATLAVNAQIVQPTLIDFL 297


>gi|303240170|ref|ZP_07326690.1| flagellar hook-associated protein 3 [Acetivibrio cellulolyticus
           CD2]
 gi|302592261|gb|EFL61989.1| flagellar hook-associated protein 3 [Acetivibrio cellulolyticus
           CD2]
          Length = 302

 Score = 66.3 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 102/352 (28%), Gaps = 53/352 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +   M            K  E++ TG+               L+   + + I + 
Sbjct: 3   ITNNMLVNNMINNIGSNLTRMDKYQEKLATGKKITVPSDDPVVAARALKLRTDVSQIKQH 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     L  +++ L+++  I+Q      V         +        +       +
Sbjct: 63  KTNVNDAMSWLEITESALTNVGDILQRARELAVQGSSSSATKDDTQKIEQEVAQLRNQLI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N T  G+Y+FSG  +  K +N   T       +   + +  + +N    + G     
Sbjct: 123 QVGNSTYAGRYVFSGFKTDTKLINDDGTFAIDVDNTESIIYEIGVSDNININVTGGD--- 179

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                               +    A   S              +  D   +        
Sbjct: 180 ------------------LFNAGGVATTGSTGQ---------LVQTFDKYISS------- 205

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
                          L  G   ++    ++ +   ++ ++  RA +G     +      L
Sbjct: 206 ---------------LNSGNHELIGN-SITDLDNNINNLLRIRAGVGARYNRLELTSNRL 249

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            N        +S++  V+Q      L +  N  + S     K+ + S++++L
Sbjct: 250 DNDEINFTKLMSENEDVDQAENIMLLKSEENVYKASLSGGAKIIQTSLVDFL 301


>gi|225849063|ref|YP_002729227.1| flagellar hook-associated protein 3 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643079|gb|ACN98129.1| flagellar hook-associated protein 3 [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 313

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 108/336 (32%), Gaps = 46/336 (13%)

Query: 23  NKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH 82
             +  K   ++ TG              S L  +     I     +   V   L +++  
Sbjct: 20  QNEIEKYTRQIATGIKLLSPSDDTVGTVSALRLKTINEDIERYGRNMDFVNTILDSAETQ 79

Query: 83  LSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141
           L+S+    Q++   +V +L  G  D     +      +  +  +  AN       LF G+
Sbjct: 80  LNSIAAAGQEVRVEIVRLLNTGVLDKEDAKVLRDYFVNMKDYIIKQANFKIGDTALFGGV 139

Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201
            +   P             + D   QG   E       G  L            F  ++ 
Sbjct: 140 KTQTDPF------------APDGTYQGETVETKVPTAPGVELNT---------TFNGRVY 178

Query: 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
              ++D                 ++  TE ID   N+    I                N 
Sbjct: 179 LGVNNDTN---------------KMILTETIDKIVNIIDNAISG-------TGSLGDLNT 216

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY-ISKSI 320
              + N    K+L     GL+ +++ R+V+G ++    ++   + ++N + +   ISK  
Sbjct: 217 ATISVNGKNVKLLEAFDIGLNTVMQYRSVIG-TQVKTIQDLKTINDQNKVFNKDLISKLE 275

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
            V+   A   L       +    +  + ++LS+L++
Sbjct: 276 DVDVAEAITNLQKAQVAYQALISVFNQNRQLSLLDF 311


>gi|224373380|ref|YP_002607752.1| flagellar hook-associated protein FlgL [Nautilia profundicola AmH]
 gi|223589952|gb|ACM93688.1| flagellin family protein [Nautilia profundicola AmH]
          Length = 881

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 17/160 (10%)

Query: 1   MKTTGISTSS--IFERMNILTKELNKDSVKLHEEMVTGQ-----SSDYGLQLGARVTSIL 53
           M+ T  +  +  I  +   L      +  K+  ++ TG        D  +      T  L
Sbjct: 12  MRVTQFTQYNNFILNQQRTL-----SELNKVQTQISTGVKIQNMYEDPVV-----YTKYL 61

Query: 54  EWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN 113
           +  +E N   +   S S      + +   L+     +      L+       D       
Sbjct: 62  KLNEEMNSFTQIKTSASFAQTFANETDTVLNDFVSTLGSFKTNLLKAANDTNDETSRSAI 121

Query: 114 AGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
              L    +     AN + +G+YLFSG   S KP+N  F 
Sbjct: 122 VSELEGELQHLKDLANTSIDGKYLFSGSKFSTKPINDNFD 161



 Score = 38.1 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 27/85 (31%)

Query: 273 MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLS 332
            +  +      +    A +G                   +    S +I  +   A  +L+
Sbjct: 797 AIEAIDHLTDHVRRSHAKIGAVSNEFGLTIERTDMLTLNVQQLQSDNIDTDLGEATMRLN 856

Query: 333 TLINKIEMSYMITTKLQKLSILNYL 357
           +L    +       K+  L++LNYL
Sbjct: 857 SLQTSYQALLASIAKVNNLTLLNYL 881


>gi|258513987|ref|YP_003190209.1| flagellar hook-associated protein 3 [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777692|gb|ACV61586.1| flagellar hook-associated protein 3 [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 305

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/354 (11%), Positives = 111/354 (31%), Gaps = 54/354 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +++  +   +    +   +D  +   ++ +G+      +  + +   +  +   +   + 
Sbjct: 3   VTSQIVSHNLKKNIERQMRDIAQNQLDISSGKKLSTLSENPSDLGKAMALKTSLDKQEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       ++ ++  L+   ++V      ++ +             +  +    E   
Sbjct: 63  KSNIDNAIGWMNQTETALADSAELVLSARDLVLEVGNLGVGETDMKAMSAEVGVIIEQLT 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N      Y+F+GI +  K                      F++ N ++    +  + 
Sbjct: 123 ANTNTVLGRSYIFAGIQTDNK----------------------FVDNNPENGYLIEGTDP 160

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM--RGI 243
                 + T                           I+  I     + V+ +  +  +G 
Sbjct: 161 QLYYHGEAT-------------------------GKIRKEIATGITMQVNVSGEVFVKGE 195

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            +I          L     D    +L       + Q    ++++R  +G   K++   + 
Sbjct: 196 NNIFKNLTDLKSALESGDKDKVSELL-----DKLDQNHDSLVQERTAVGGKIKHLENMQE 250

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            + N++  + T +    GV+      QL+      E S  I+ K+ + +IL+YL
Sbjct: 251 QMDNQSLNMQTLLENLQGVDTAETTIQLAENKMAYEASLAISAKILQTNILDYL 304


>gi|322421654|ref|YP_004200877.1| flagellar hook-associated protein 3 [Geobacter sp. M18]
 gi|320128041|gb|ADW15601.1| flagellar hook-associated protein 3 [Geobacter sp. M18]
          Length = 306

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 102/336 (30%), Gaps = 49/336 (14%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
                 +L E++ +G + +           +L+ + + +   +   + +     L+ +  
Sbjct: 19  GRSAIDQLQEQIASGYNINRPSDDPLTTRQLLDLQDQIDSGEQYSSNITKAETLLNVTNT 78

Query: 82  HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141
            L+SM  ++Q +      ++ G  D +        L       V   N     QY+F+G 
Sbjct: 79  ALTSMADLMQQVKKIAGDMVTGTLDASSISSAVSNLTQLKSQLVDMGNTRLGDQYVFAGY 138

Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201
            +S+                FD    G     +  L      + +        D ++  +
Sbjct: 139 KTSQP---------------FDAA--GAFSGTTDLLSVEIAPDSNVATTVSGGDLLRGGK 181

Query: 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
              +                          +   A      I  +  +  +     +K+ 
Sbjct: 182 PPAA--------------------------VGSGATAGQGPIDILGSIDALIAAITAKD- 214

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
                +      +  V+ G   I   ++ +      ++  +  + +  N + T       
Sbjct: 215 -----SAAITDGVKNVKAGADQITVAQSDVAGRLLRLDNMKSMIASNQNTLKTVFGDIQN 269

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           V+   A   LS        +   T+KL +LS+L+Y+
Sbjct: 270 VDYAKAGVMLSQQTTAFNAALSATSKLSQLSLLDYM 305


>gi|115523524|ref|YP_780435.1| hypothetical protein RPE_1505 [Rhodopseudomonas palustris BisA53]
 gi|115517471|gb|ABJ05455.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 534

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 9/209 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  +G+S       +      L      L +++ +G+ SD     G+  +  +    + +
Sbjct: 1   MTISGVS--GRTSYIGTGILNLRSQLDTLTQQLASGRVSDTYAGQGSGRSLAVSLRAQLS 58

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
             +    + + V  RL+     L+ +  I  ++ G  V       DNN            
Sbjct: 59  GYSSYADTATNVNTRLNVMNLSLTRLVAINSEVKGAAVSA-GNTLDNNGMTAGQKTAALD 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYF---TKDSLAKKSFDQMLQGFLEENSKSL 177
           +   V   N     +YLFSG  +   P+         +  A     Q++    + +  + 
Sbjct: 118 FTDSVDLLNAQVGDRYLFSGRATDTTPVTEADIILNGNGAAIAGLKQVISERHDADVGTN 177

Query: 178 LAGQHLEVSSMNAQQMT---DFIKQLEDK 203
             G+ +  +   A  +    D+       
Sbjct: 178 GMGRTIVSAGATATSVQIGEDYAADPVGP 206



 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 51/143 (35%), Gaps = 5/143 (3%)

Query: 220 HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTE---FLSKNLTDGARNVLTKKMLST 276
                RI +   +   A  + + +R  +    +        +          L +++   
Sbjct: 390 GTAVSRIDEAITVQYGARADEQALRTQLMNVAVFAATKTDATDPYASAKIAALNQRVAQN 449

Query: 277 VQ--QGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTL 334
           +    G   I + +A +  ++ +I            I  T +    G+       ++  L
Sbjct: 450 LAVIPGTQTIQDIQADVAGAQASIKATTNRQTQAKTITQTMLDSIEGINDDEVATKILAL 509

Query: 335 INKIEMSYMITTKLQKLSILNYL 357
              ++ SY  T+KL ++S++N++
Sbjct: 510 QTALQASYTTTSKLYQMSLVNFI 532


>gi|291617027|ref|YP_003519769.1| FlgL [Pantoea ananatis LMG 20103]
 gi|291152057|gb|ADD76641.1| FlgL [Pantoea ananatis LMG 20103]
 gi|327393478|dbj|BAK10900.1| flagellar hook-associated protein 3 [Pantoea ananatis AJ13355]
          Length = 320

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 114/349 (32%), Gaps = 37/349 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ IF++      +     +   +++ TG             +  +   Q +   ++ 
Sbjct: 3   LSTNMIFDQQVRGVSDAQSSWLNAGKQLSTGLRVSNPSDDPIAASRAVVLSQTQAQASQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +   + LS  +  L+ +   +      +V    G   ++     A  L       +
Sbjct: 63  SVARTFADQGLSLEENTLNGVTNSIMSAQSMIVAAANGSLSDDDRASYATQLEGVRAQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D  G+Y+F+G  +   P           +   D + Q    + + ++    +  
Sbjct: 123 NQVNSKDANGRYIFAGYKTDSPPFVD-GAGGVTYQGGTDAITQKVDTDRTMTIGHTGNSI 181

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V S+ +  + +                                +    +     N+  + 
Sbjct: 182 VMSITSNAVKE-------------------------------PNGGTSET----NLFNML 206

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D    A+   +  + + T    +    K    +   L+ ++  R+ +G   K ++     
Sbjct: 207 DSAISALKVPQNGADDATKATFSAAMDKTSRGLSNSLNNVLSVRSEIGTQLKELDTLNAQ 266

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++  I D+ +S  + V+   A +  +     ++ SY   T + ++S+
Sbjct: 267 GDDRKVIYDSQMSSLVDVDYTQAISSYTMQQQALQASYKTFTDMSQMSL 315


>gi|75675294|ref|YP_317715.1| hypothetical protein Nwi_1101 [Nitrobacter winogradskyi Nb-255]
 gi|74420164|gb|ABA04363.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 501

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 13/301 (4%)

Query: 70  SLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA------GMLRDSYES 123
           S+   +L +  + L+           P + +  G T+       +          ++ + 
Sbjct: 201 SVYGMKLQSVSSSLTGATVTGPAGAPPAISIDLGVTNPADGDTVSFTFDLPDGTSETVQL 260

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             +    T  G +      ++           S+   +   ++     + S+        
Sbjct: 261 TASSEAPTPAGSFAIGATPTATAANLNAALTASIGALAGTSLVAASAVQASRDFFGQPPQ 320

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY--RIKDTEGIDVSANVNMR 241
            V  +    ++     +    +D   W                R+  +  +      N  
Sbjct: 321 RVDVIPPATLSTATAAVNGTAADTVQWYTGDEGTGSARATSVVRVDASVTVQYGMRANED 380

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTK-----KMLSTVQQGLSGIIEQRAVLGISEK 296
            IR +M    +     +      A + ++          +V+ G   I + +  L  ++ 
Sbjct: 381 AIRSLMESVALLAAVTTSPADPNAADQISALNARVARNLSVEPGSQNIRDIQVDLANAQT 440

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
            + +     +     +   I ++  +      +QL  L   ++ SY  T  L +LS++ +
Sbjct: 441 MMKDATARQKLTQATMQNIIDQAENISTDEVASQLLALQTDLQASYQTTAMLSQLSLVKF 500

Query: 357 L 357
           L
Sbjct: 501 L 501



 Score = 56.3 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 1/131 (0%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
             + L      L  ++ +G+ S     +GA     +    + ++IA    +   +   ++
Sbjct: 16  SVRNLKAQMADLQNQLTSGKKSTTYSGMGANGGFAIAARAQLSNIAAYTDTMMKINTNIN 75

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
            +   L ++  I   +    +   +      +           + S V   N     +Y+
Sbjct: 76  VANTALQALSDIGTQLQNAALSGSQALNSAGQ-TAGQQTAVAQFSSVVGILNTQAGDRYI 134

Query: 138 FSGINSSEKPL 148
           FSG     +P+
Sbjct: 135 FSGSEIYTQPV 145


>gi|90411012|ref|ZP_01219026.1| flagellar hook-associated protein [Photobacterium profundum 3TCK]
 gi|90328225|gb|EAS44536.1| flagellar hook-associated protein [Photobacterium profundum 3TCK]
          Length = 396

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 142/396 (35%), Gaps = 58/396 (14%)

Query: 9   SSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSIL---EWEQEKNHIAER 65
           +S+   MN    ++ ++     +++ +G+     L  G    + +    ++Q+   I + 
Sbjct: 12  NSVSNDMNRQQIKVQEN----QQQLASGKRL---LTAGDDPVASIYIQNFDQQNTQIDQS 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + S ++   RL+  +A ++ ++ ++ D     ++++ G   ++    +   ++  ++SF+
Sbjct: 65  VKSITMARNRLNNEEAAITEVENLLDDAKRKSMMMVNGSLSSDDRVAHKQDMQGVFDSFM 124

Query: 126 TFANMTD-EGQYLFSGINSSEKPL------------NGYF-------TKDSLAKKSFDQM 165
              N  D  G Y+F+G   S++P             + Y        + D     + D++
Sbjct: 125 NLVNSRDESGNYVFAGTQYSQQPFFRDNNGDVAYVGDSYQRMAKIAPSVDVPINDAGDKL 184

Query: 166 LQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKF---SDDEYWANNWSNASDHNI 222
                               S +   Q  +     + ++         + ++    D  +
Sbjct: 185 FLEVANPFGDYQPDYTLESGSLLLLSQAKNGNDADQSEYRVDFSTSSGSTSYELYQDGAL 244

Query: 223 KY---------------------RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
                                   IKD + I ++   N+            G E    ++
Sbjct: 245 VSTAPFDPHKGIQWNTLQVDLKGEIKDGDSIALNRQENVSVFDAFKR----GIELSDSDV 300

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
           +D +      ++   + QG   I   R+ +G   + ++ +    Q+   +++        
Sbjct: 301 SDASATAELHQVAEELAQGFKHINRARSEVGTRLQTLDRQEDMHQDFKIVMNEARGTLED 360

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++  TA  +L+  +  ++ S     K + L++ NY+
Sbjct: 361 LDYATAVIELNQNMMALQASQQAFAKTKDLNLFNYI 396


>gi|224437569|ref|ZP_03658527.1| flagellar hook-associated protein FlgL [Helicobacter cinaedi CCUG
           18818]
 gi|313144023|ref|ZP_07806216.1| flagellar hook-protein FlgL [Helicobacter cinaedi CCUG 18818]
 gi|313129054|gb|EFR46671.1| flagellar hook-protein FlgL [Helicobacter cinaedi CCUG 18818]
          Length = 855

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 5/149 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  +      +MN     +    + ++ ++ +G    YG Q  +     L+ E EK 
Sbjct: 1   MRVTFGTKY---NQMNYYQGTMQSKLMDINTKIASGLKIQYGYQDSSVFNQNLKLEYEKI 57

Query: 61  HIAERLH-SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
           ++ + +   N   T  L+ +   L+ + +  +     L+               A  L  
Sbjct: 58  NLDQGIDVGNDAYTSTLN-TDKALAELSQTAEQFNTKLIQAANDIHSPTSREAIARDLEK 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPL 148
             +  +  AN +  G++LF+G N   +P 
Sbjct: 117 LKDHMINIANTSIGGEFLFAGSNVKIRPF 145



 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 90/277 (32%), Gaps = 28/277 (10%)

Query: 94  VGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGY-- 151
                I L    D       +     SY   +   N+           N S +P+  Y  
Sbjct: 594 QAEFSIPLYNPHDEPPAVTISKADDVSYRQLLDAINIAL---------NYSNQPMEYYQN 644

Query: 152 -----FTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSM--NAQQMTDFIKQLEDKF 204
                       K +++ +L       S  L     +E+S    +  +M   +       
Sbjct: 645 AQAQKGVPTQEGKNAYESLLAQTKGRVSAYLTQDGRIEISDEMRSVSRMKFMMYNNASND 704

Query: 205 SDDEYWANNWSNAS-DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTD 263
             ++   N  S+ + + N    I +    DV+   ++ GI + +   V   +      T 
Sbjct: 705 FSEQGIRNYRSSLTFNANNALTIDEP---DVNFFKSLDGIIESVRAGVYRPDAFGDEYTS 761

Query: 264 GARNVLTKKMLSTVQQGLSGIIEQRAVLG---ISEKNINEERVFLQNKNNIIDTYISKSI 320
             RN   +  +         I +  A+ G    S +N+      L+ +   I +    +I
Sbjct: 762 EMRNKGIQNAIELFGHLSDHIEKMIALNGAHSRSFENVIRRNEVLRVQIESIKS---DTI 818

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           G +    +   S L          T+++ ++S++NYL
Sbjct: 819 GTDVAETYNHFSNLTTNYNAVLASTSRINQMSLVNYL 855


>gi|149375026|ref|ZP_01892799.1| Flagellin and related hook-associated protein [Marinobacter
           algicola DG893]
 gi|149360915|gb|EDM49366.1| Flagellin and related hook-associated protein [Marinobacter
           algicola DG893]
          Length = 403

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 129/402 (32%), Gaps = 52/402 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS+  IF       +ELN    +  E++ TG+  +           IL+ +QE + I   
Sbjct: 4   ISSQQIFSGGINRLQELNSSLNQTQEQISTGKRVNKPSDDPVAAARILKLDQELSRIETY 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +  L   RL   ++ L+S   ++Q +    V    G    +     +  +++      
Sbjct: 64  QRNAGLAENRLQQEESALASSVDVIQRIRELTVQAGNGSLSPSDRKSISSEMKERIGQLA 123

Query: 126 TFANMTD-EGQYLFSGINSSEK-----------------------------PLNG----- 150
             AN  D  G+Y+FSG   S                               P++      
Sbjct: 124 NIANTRDASGEYIFSGFQGSTAAFGKDASGSWVYQGDEGQRVLEIDDGVTVPISDHGKGI 183

Query: 151 YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT---DFIKQLEDKFSDD 207
           Y +  +      D         +   +       +S+++   +T   D +       +  
Sbjct: 184 YSSVPAAVFAESDPGNAAAARID--GIQVADDGALSAVSPDDITITVDTVAGTVSAVNSR 241

Query: 208 EYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI------RDIMFVAVIGTEFLSKNL 261
                  + A+  + +          ++   N          R  +F  +        N+
Sbjct: 242 TGDPLTVTPAAYTSGESFEVAGVQATITDAGNGDEFTLRTGERQSVFATIENLIDGLDNI 301

Query: 262 T------DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
                    A + L    L  +      I++++  +G     ++  + FL++ +   +  
Sbjct: 302 DKTSPAGQAAYDDLIAASLQNLDNAQESIVQKQTEIGGRLNAVDSTKSFLEDSSVYSEDI 361

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            S+   V+   A + LS     ++ +     ++ +LS+ + L
Sbjct: 362 RSQLRDVDYAEAISNLSFQSFVLQAAQQSFAQVSQLSLFDRL 403


>gi|16125151|ref|NP_419715.1| flagellin [Caulobacter crescentus CB15]
 gi|221233879|ref|YP_002516315.1| flagellar hook-associated protein FlgL [Caulobacter crescentus
           NA1000]
 gi|13422163|gb|AAK22883.1| flagellin, putative [Caulobacter crescentus CB15]
 gi|220963051|gb|ACL94407.1| flagellar hook-associated protein FlgL [Caulobacter crescentus
           NA1000]
          Length = 307

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 100/354 (28%), Gaps = 49/354 (13%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T +ST   +  M     +      ++  ++ + + +            +      +  I 
Sbjct: 2   TRVSTVQNYNVMTSNLMKAQIRQNEVGGQVASQKVATDLRGYAKNAEVLTAMRSAQTKIN 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             L    LVT RL      +  +    +D    +                   L+ ++  
Sbjct: 62  GLLDQTKLVTNRLEMQNTGIGRVADATKDAREAIA----NAMAAGNATTLMQQLQAAFSE 117

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
            V   N    G Y+FSG  +         T  ++A  +         + +          
Sbjct: 118 VVQGVNTKSNGLYVFSGAQTQTA----TTTAATMADLTAAPSTASLFQNDQYITTNRVDE 173

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           + ++              D F                                       
Sbjct: 174 QTNAKTGVLGDALGTATFDAFKQ------------------------------------- 196

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
              +   +      + NL D   N L   MLST       +++ +   G+++K      +
Sbjct: 197 ---VQAYIDANGPFTGNLNDTQVNFLKG-MLSTFDSAYKSVVDIQGKNGVNQKRFEAAEI 252

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            L N+ + + T +   + V+   A  +L      ++ S  + + LQ  S+LN L
Sbjct: 253 DLSNQADTLTTMVGGIVDVDMAEAITRLEAAKLAVQASAQVFSSLQASSLLNVL 306


>gi|83589599|ref|YP_429608.1| flagellar hook-associated protein FlgL [Moorella thermoacetica ATCC
           39073]
 gi|83572513|gb|ABC19065.1| Flagellin-like protein [Moorella thermoacetica ATCC 39073]
          Length = 305

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 94/333 (28%), Gaps = 50/333 (15%)

Query: 25  DSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLS 84
           +  +  E+M +G+  +        V  +L ++       +   +       L  S++ L 
Sbjct: 22  NMARTQEQMSSGKRVNRPSDDPIVVARVLAFKTSIAANDQYKKNMEDAKGWLDASESVLG 81

Query: 85  SMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSS 144
               ++Q      V    G             +    +  +  AN +  G+Y+F G  ++
Sbjct: 82  MATDVLQRARELAVYGSNGTMPPESMDALGKEVDQLLDEMMQVANTSYGGRYIFGGSQTT 141

Query: 145 EKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKF 204
             P                                     VS+ ++          +   
Sbjct: 142 ATPF------------------------------------VSNSSSTD--------DPVE 157

Query: 205 SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDG 264
            + +  A NW  A    I       +    + N N      I  +    +  L       
Sbjct: 158 YNGDSAALNWEIAPGVTISVNENGDQIFMQAIN-NGSATESIFKLLNDLSAALHGGTATD 216

Query: 265 ARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQ 324
               L K       Q +  I+  RA LG     +      L++    +   +SK   ++ 
Sbjct: 217 VSATLNK-----FDQAIDHILNIRATLGAKSNRMEMAMSRLEDTQIGLTQTMSKLEDIDL 271

Query: 325 HTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                   T  N    S     K+ + S+++YL
Sbjct: 272 AETVMNYKTQENVYLASLSTGAKVLQPSLIDYL 304


>gi|87306350|ref|ZP_01088497.1| probable flagellar hook-associated protein 3 [Blastopirellula
           marina DSM 3645]
 gi|87290529|gb|EAQ82416.1| probable flagellar hook-associated protein 3 [Blastopirellula
           marina DSM 3645]
          Length = 1243

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 55/147 (37%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
           TT +S  ++  R+         +   L  ++ TG+               +  +      
Sbjct: 9   TTRVSDGNLHSRLLSQLAASQANLFSLQNQLSTGRRLLAPSDDAPAAIRGITLQSLIERK 68

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            +   + S     L+ +   ++    ++ +M G  V +++    + +    +  L+++ +
Sbjct: 69  TQISVNLSTSQSYLAATDTAMAGAADLLAEMRGLAVTMVDSTATDTEVAAASQTLQNALQ 128

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLN 149
            FV   N    G++LF G N++  P  
Sbjct: 129 QFVDIGNRQFRGRFLFGGSNTTTTPFT 155



 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 9/280 (3%)

Query: 78   TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
            ++   + S      + +     ++                     +     N     + L
Sbjct: 973  SADTAMESDPTNNGEGLIVQTGVIASTNGGTPIADAEPAAASVSFAMPEDLNTAFTLESL 1032

Query: 138  FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
            + G   ++  +      D+LA  S   +     +  + S+ AG       +NA  +    
Sbjct: 1033 YPGTAHNDVRIVF---NDTLASGSPTAVYNSGSKTLTLSIDAGVTTTEEIINAINLEGTF 1089

Query: 198  KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                D+  D         +A+           E +    + N    R+   V     +  
Sbjct: 1090 HSQLDRSVDITNDGTGVVSATGTVGTTSGGTAEVM-TGKDANP---RETKSVFNTLIKLN 1145

Query: 258  SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
               +T         +++ ++   LS +   R  LG   +N++  +  L++    ++  +S
Sbjct: 1146 EAIVTRDYVQ--ISRLVDSLDTDLSRLSFSRGELGARSQNVDLMKTRLEDDMVELNANLS 1203

Query: 318  KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              I V+   A +  +      + S     ++ +LS+L+Y+
Sbjct: 1204 TEIEVDFVKAASDFAAQQASYQASLQTIGQIYQLSLLDYI 1243


>gi|311070046|ref|YP_003974969.1| flagellar hook-associated protein FlgL [Bacillus atrophaeus 1942]
 gi|310870563|gb|ADP34038.1| flagellar hook-associated protein FlgL [Bacillus atrophaeus 1942]
          Length = 298

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/346 (12%), Positives = 103/346 (29%), Gaps = 58/346 (16%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
              +            KL  ++ +G+               L++  + + + +   + S 
Sbjct: 10  QNSLRY-IGSSYAKLDKLQSQVSSGKKISKASDDPIVAMKSLKYNTQLSQVKQYQSNASQ 68

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
               L  ++ +++    ++  +   +V    G+    +       +    E  +  AN  
Sbjct: 69  AFTWLENTETNITEGIDVLSKVRDLVVKAKNGQNGEAELKSIGVEVNQLKEQLLNIANTQ 128

Query: 132 DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
             G+Y+F+G NS   P+            + D  +                   S+M  +
Sbjct: 129 VNGRYIFNGTNSDSPPVVDNGDGTYTISDADDVNVN----------------ISSNMTLK 172

Query: 192 QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAV 251
                        + D   A   ++AS  N+   +   E    S +V+            
Sbjct: 173 ------------VNSDPKSAFGGTSASGQNVFEMLDSLENALNSGSVDD----------- 209

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
                L   L+D             + Q   G+  +R+ +G     +      L+ +   
Sbjct: 210 -----LKSTLSD-------------IDQFTDGMSAERSDIGARYNRLELINTRLETQEET 251

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +S +  VE            +    +  +  K+ + +++++L
Sbjct: 252 ATKVLSDNEDVELEKVITDFIAQASVHRAALAVNAKIVQPTLIDFL 297


>gi|317177111|dbj|BAJ54900.1| flagellar hook-associated protein FlgL [Helicobacter pylori F16]
          Length = 826

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSGINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDVHSETSRTAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147


>gi|285018202|ref|YP_003375913.1| flagellin and related hook-associated proteins (hook-filament
           junction protein) [Xanthomonas albilineans GPE PC73]
 gi|283473420|emb|CBA15925.1| probable flagellin and related hook-associated proteins
           (hook-filament junction protein) [Xanthomonas
           albilineans]
          Length = 401

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/402 (14%), Positives = 124/402 (30%), Gaps = 52/402 (12%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQ 57
            +T IS+  I+ +      +       L +++ TGQ     +D  +  G      +  ++
Sbjct: 1   MSTRISSGMIYNQSLNTMLDKQGRIAHLQQQLSTGQRLVTAADDPVAFGT----AVTMDR 56

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
               +A+   + ++V  RL+  +  LS    ++  +    V    G  + +     A  L
Sbjct: 57  ADAALAQFGQNANIVQNRLNLQENALSQAGSLMARVNDLTVEANSGALNTSNRQAIASEL 116

Query: 118 RDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKD--------SLAKKSFDQMLQG 168
           +  ++S ++ +N TD  G+YLF G      P      +            + + D  +  
Sbjct: 117 KTLHDSLLSLSNSTDGSGRYLFGGTADGNPPFTVVGGQAVYNGNQTQRSVEVAPDTKVSD 176

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNAS---------- 218
            L  +   +           +A         L D   D      N S+ S          
Sbjct: 177 TLPGSEIFMRVRTGDGSVDAHAGGSNTGTGLLLDFSRDGSSPGWNGSSYSVVFTDPNTYQ 236

Query: 219 -------------------------DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIG 253
                                    + ++       +   +  + N      I  +  + 
Sbjct: 237 VKDSSGTVINTGTYTAGDTLNFAGLNMHLDGAPAAGDSFQIGPSTNKDVFSTINDLVNVL 296

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
                      A     +  +  + Q  S I   RA  G     I+         +  + 
Sbjct: 297 NTDPVTPTGKAALQNALQSSMRDISQATSKISAARASGGAQLAAIDNASDLRSANDVSLK 356

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           T +S    ++   A ++     + ++ +  I T++Q +S+ N
Sbjct: 357 TSLSSVRDLDYADAISKYQLEQSALKAAQTIFTQMQSMSLFN 398


>gi|317181639|dbj|BAJ59423.1| flagellar hook-associated protein FlgL [Helicobacter pylori F57]
          Length = 828

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSGINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147


>gi|54308104|ref|YP_129124.1| flagellar hook-associated protein FlgL [Photobacterium profundum
           SS9]
 gi|46912530|emb|CAG19322.1| hypothetical flagellar hook-associated protein FlgL [Photobacterium
           profundum SS9]
          Length = 396

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/396 (12%), Positives = 141/396 (35%), Gaps = 58/396 (14%)

Query: 9   SSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSIL---EWEQEKNHIAER 65
           +++   MN    ++ ++     +++ +G+     L  G    + +    ++Q+   I + 
Sbjct: 12  NAVSNDMNRQQIKVQEN----QQQLASGKRL---LTAGDDPVASIYIQNFDQQNTQIDQS 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + S ++   RL+  +A ++ ++ ++ D     ++++ G   ++    +   ++  ++SF+
Sbjct: 65  VKSITMARNRLNNEEAAITEVENLLDDAKRKSMMMVNGSLSSDDRVAHKQDMQGIFDSFM 124

Query: 126 TFANMTD-EGQYLFSGINSSEKPL------------NGYF-------TKDSLAKKSFDQM 165
              N  D  G Y+F+G   S++P             + Y        + D     + D++
Sbjct: 125 NLVNSRDESGNYVFAGTQYSQQPFFRDNNGDVAYVGDSYQRMAKIAPSVDVPINDAGDKL 184

Query: 166 LQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKF---SDDEYWANNWSNASDHNI 222
                               S +   Q  +     + ++         + ++    D  +
Sbjct: 185 FLEVANPFGDYQPDYALESGSLLLLSQAKNGNDADQSEYRVDFSTSSGSTSYELYQDGAL 244

Query: 223 KY---------------------RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
                                   IK+ + I ++   N+            G      ++
Sbjct: 245 VSTAPFDPHKGIQWNTLQIDLKGEIKNGDSIALNRQENVSVFDAFKR----GINLSDSDV 300

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
           +D +      ++   + QG   I   R+ +G   + ++ +    Q+   +++        
Sbjct: 301 SDASATAELHQVAEELAQGFKHINRARSEVGTRLQTLDRQEDMHQDFKIVMNEARGTLED 360

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++  TA  +L+  +  ++ S     K + L++ NY+
Sbjct: 361 LDYATAVIELNQNMMALQASQQAFAKTKDLNLFNYI 396


>gi|308175272|ref|YP_003921977.1| flagellar hook-filament junction [Bacillus amyloliquefaciens DSM 7]
 gi|307608136|emb|CBI44507.1| flagellar hook-filament junction [Bacillus amyloliquefaciens DSM 7]
 gi|328555245|gb|AEB25737.1| flagellar hook-associated protein FlgL [Bacillus amyloliquefaciens
           TA208]
 gi|328913606|gb|AEB65202.1| flagellar hook-filament junction [Bacillus amyloliquefaciens LL3]
          Length = 305

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 101/341 (29%), Gaps = 68/341 (19%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             +L +++ TG+               +++  +   + +   + S     L  S++ ++S
Sbjct: 23  LDRLQQQVSTGKKITKASDDPVVAMKGMQYRTQLAQVNQYQRNVSQGFTWLENSESSVNS 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
              I+  +   +V          +       +    +  V+ AN    G+YLF+G NS  
Sbjct: 83  ETDIMGKIRDLMVQAKSDSNGETELKAIGTEIGQLKKQLVSVANTQVNGRYLFNGTNSDV 142

Query: 146 KPLN---------GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDF 196
            P+           Y    S +  + +      L+ NS    A   +     N   + +F
Sbjct: 143 PPITENADGTYTYNYENYTSASDVNINISNGAVLKVNSDPNSAFGGVAQ---NGDNVFEF 199

Query: 197 IKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF 256
           +  LE   S         S A    I   I               G  D M         
Sbjct: 200 LNSLEASLSKGTL-----SEADSKQILSDI--------------DGFTDKM--------- 231

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
                                         +++ +G     +   +  L+++    +  +
Sbjct: 232 ----------------------------NAEKSNIGARTNRLELIQTRLESQAATAEKVL 263

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           S +  VE         +     + +  +   + + S++++L
Sbjct: 264 SDNEDVEMEDVIVDYLSQQTVHKAALSVNANIIQPSLIDFL 304


>gi|167770234|ref|ZP_02442287.1| hypothetical protein ANACOL_01577 [Anaerotruncus colihominis DSM
           17241]
 gi|167667556|gb|EDS11686.1| hypothetical protein ANACOL_01577 [Anaerotruncus colihominis DSM
           17241]
          Length = 358

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 100/360 (27%), Gaps = 35/360 (9%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           +N +  +      K    +   + SD  +  G R       + ++  +      N++   
Sbjct: 16  LNTVMTKRASTMEKGQSGLAFNRLSD-NVAAGVRA-----MKVQEERLTSERQLNTIENF 69

Query: 75  R--LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
           R    T   +L S+  I+      +   L G    +   + A  +    +  + FAN   
Sbjct: 70  REEFKTIDTNLDSIDSILVSARDKVEKALNGTNGGDPREVIAKEIGSLKKQILQFANSQY 129

Query: 133 EGQYLFSGINSSEKPLNGYFTK--------------DSLAKKSFDQMLQGFLEENSKSLL 178
            G++LF G N++E P     T               D   +  +          ++    
Sbjct: 130 AGKFLFGGTNNAEAPFTDDGTGKLCFNGIPVEDIRYDEARQTYYYVAPGTKPPNDTYDDR 189

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEG-IDVSAN 237
           AG      ++                     +  N+    +  +      +    + + +
Sbjct: 190 AGIVPGSENIYVDIGLGLKVNDNSSIDPRSAFQTNF----NGLLVLGFGPSVTGANGTES 245

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N            I +E                 +    +  +  +   R  LG     
Sbjct: 246 PNS--------AYDIMSELEKVLADPDFDQDKAGDLFDHFETVIDDMRFSRVDLGTRMNF 297

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++     ++N    + T  +  I  +       L            + T L   S+L++L
Sbjct: 298 LDRSADRMENDIVNLTTTETNLISADPFDTAIDLKQCEYTWMAVLQLGTMLLPTSLLDFL 357


>gi|91976148|ref|YP_568807.1| hypothetical protein RPD_1669 [Rhodopseudomonas palustris BisB5]
 gi|91682604|gb|ABE38906.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 535

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 52/138 (37%), Gaps = 5/138 (3%)

Query: 225 RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLT---DGARNVLTKKMLSTVQQ-- 279
           R+ D+  +   A  + + +R  +    +     +             L +++ + +    
Sbjct: 398 RVDDSITVQYGARADEQALRKQLQTVAVFAAVTTSATDPYGSDKMAALNQRVAANLATEP 457

Query: 280 GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIE 339
           G   I   +A L  S+  +   +        +  T +    GV       +L  L   ++
Sbjct: 458 GQQSIQNIQADLAGSQAAMKATKDRQTQTKALAQTMLDSIEGVNNDEVATKLLALQTSLQ 517

Query: 340 MSYMITTKLQKLSILNYL 357
            SY +T++L ++S++ +L
Sbjct: 518 ASYQVTSQLYQMSLVKFL 535



 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 60/190 (31%), Gaps = 7/190 (3%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
              L      L +++ +G+ S      G   T  +   ++  +I+    +   +  R+  
Sbjct: 17  ILNLRSQLDNLSQQLSSGRISSTYAGDGTGRTLAIGMREQLANISSYSDTMVNINTRIGV 76

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +   L  +  I  ++ G          +  + P       D ++S V   N     +YLF
Sbjct: 77  ANLSLQRLNAIGSEVKGAAASAGSTLDNTGQTPGQKTAGLDFFDS-VDMLNAQTGDRYLF 135

Query: 139 SGINSSEKPLNGYF---TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT- 194
           SG  +   P+         +        Q++    + +  +   G+ +  +      +  
Sbjct: 136 SGRATDTAPVTAADQIMNGNGAGIAGLKQVVSERHDADVGTNGMGRTIISAGATPTSVQI 195

Query: 195 --DFIKQLED 202
             DF      
Sbjct: 196 GEDFAANPFA 205


>gi|317179308|dbj|BAJ57096.1| flagellar hook-associated protein FlgL [Helicobacter pylori F30]
          Length = 828

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSGINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDMHSETSRTAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147


>gi|317180101|dbj|BAJ57887.1| flagellar hook-associated protein FlgL [Helicobacter pylori F32]
          Length = 828

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSGINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDMHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 36.2 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 89/265 (33%), Gaps = 26/265 (9%)

Query: 102 EGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKS 161
               D      N    R   ++     N +          N+    +    + +  +K+S
Sbjct: 581 PTSADIQASKPNEVTYRQLMDAMSIALNYS----------NTD-PAIYQQISDNPTSKES 629

Query: 162 FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY-WANNWSNASDH 220
            D    G L++   +L    + E   +    M    K     F  D   ++ N  ++   
Sbjct: 630 KD-RFIGLLKQAKANLSVNLNEEGKVIIQDNMHSNTKMQFMLFDKDANDFSQNALHSDKP 688

Query: 221 NIKYRIKDTEGIDV-SANVNMR------GIRD-IMFVAVIGTEFLSKNLTDGARNVLTKK 272
           ++K    +   ID  S N   +       +R  I     +G  + S     G +N +T  
Sbjct: 689 SLKLNANNALIIDKPSVNFFDQLENIITSVRKGIYRPDALGDTYSSDMRNLGIQNGIT-- 746

Query: 273 MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLS 332
           ++  +   +  +I +    G + +NI      L+ +   I     ++ G +    + + S
Sbjct: 747 LIDHLSDHIEKMIAKNGTHGKAFENIIRRNEVLKTQVQSIRG---ETTGTDMAETYNKFS 803

Query: 333 TLINKIEMSYMITTKLQKLSILNYL 357
            L N        T K+  LS+  YL
Sbjct: 804 NLANNYNAVLASTNKINNLSLTKYL 828


>gi|85715031|ref|ZP_01046016.1| hypothetical protein NB311A_11682 [Nitrobacter sp. Nb-311A]
 gi|85698228|gb|EAQ36100.1| hypothetical protein NB311A_11682 [Nitrobacter sp. Nb-311A]
          Length = 501

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 65/210 (30%), Gaps = 7/210 (3%)

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNW 214
            S+ K +   ++       ++         V       +      +    +D   W    
Sbjct: 292 SSIGKLANTSLVAASAVRATRDFFDQPPQRVDLTPPATLATATAAVNGTVADTVQWYTGD 351

Query: 215 SNASDHNIKY--RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARN---VL 269
             A         R+  +  +      +   IR +M    +     +      A +    L
Sbjct: 352 DGAGSARATSVVRVDSSVTVQYGMRASEDAIRSLMESVAVLAAVTTSPTDPNAADQISAL 411

Query: 270 TKKMLS--TVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
             ++    TV  G   I + +  L  ++  + +     +     +   I ++  V     
Sbjct: 412 NSRVAQNLTVAPGSQTIGDIQVDLANAQTVMKDATARQKLTQATMQNIIDQAENVSTDEV 471

Query: 328 HAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +QL  L   ++ SY  T  L +LS++ +L
Sbjct: 472 ASQLLALQTDLQASYQTTAMLSQLSLVKFL 501



 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 1/133 (0%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
             + L      L  ++ +G+ +     +GA     +    + ++IA    +   +   + 
Sbjct: 16  SIRNLKAQMADLQGQLTSGKRATTYSGMGANEGFAIAARAQLSNIAAYTDTMMKINTNIG 75

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
            +   L ++  I   +    +   +      +           + S V   N     +Y+
Sbjct: 76  VANTALQALSDIGTQLQNAAISGSQTLNSMGQ-TAGQQTAVAEFSSMVGILNTQAGDRYI 134

Query: 138 FSGINSSEKPLNG 150
           FSG     +P+  
Sbjct: 135 FSGSTIYTQPVAS 147


>gi|317121044|ref|YP_004101047.1| flagellar hook-associated protein 3 [Thermaerobacter marianensis
           DSM 12885]
 gi|315591024|gb|ADU50320.1| flagellar hook-associated protein 3 [Thermaerobacter marianensis
           DSM 12885]
          Length = 295

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/342 (9%), Positives = 88/342 (25%), Gaps = 66/342 (19%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            +   +        + +G+               L        +     +       L  
Sbjct: 16  LRRAQERLSTYQNRLASGKQVQRPSDDPVATVDSLRLRARLAEVDRLRANAEDARDWLEI 75

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           + + L    +I+Q      +    G   ++     A  ++   +  +  AN T    Y+F
Sbjct: 76  TDSALDRATQILQRARELAIRAASGTLPDSSLDAIAAEVQQLRDHLLEVANTTLGDAYIF 135

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
            G+ + + P   Y    + A     Q + G                              
Sbjct: 136 GGLATQQPP---YVADPASATGVAYQGING------------------------------ 162

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN---VNMRGIRDIMFVAVIGTE 255
                                  ++  +     + V+             +     +   
Sbjct: 163 ----------------------PVEREVAPGTTVAVNVPGDAAFDPAFDALGQ---MAAA 197

Query: 256 FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
             +++L       +   +++ +   + G++  RA +G     I      L       +  
Sbjct: 198 LAARDLP-----TVGGAVVAALDDAIDGLLRFRAEVGAKVNRIELGLYRLDEIRIDTERL 252

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +S     +      +LS        + M   ++ + +++++L
Sbjct: 253 LSGVEDADIAETAMRLSVSEAAYRAALMAGARIVQPTLMDFL 294


>gi|20807000|ref|NP_622171.1| flagellar hook-associated protein FlgL [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515483|gb|AAM23775.1| Flagellin and related hook-associated proteins [Thermoanaerobacter
           tengcongensis MB4]
          Length = 296

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 93/332 (28%), Gaps = 59/332 (17%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             K    + +G+           V + L  + +         +       L  + + LS 
Sbjct: 23  LQKGQNMLSSGKKFTRPSDDPVAVATSLRIKTDMARNDAYTKNADDAKSWLEITDSALSQ 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           +  ++Q      V    G    +     A  +       V   N    G+Y+F+G  +  
Sbjct: 83  LGDLLQRTRELAVEGANGTLTQSDMEKIAQEIMQLKAQMVQVGNTQYNGRYIFAGFKTDT 142

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
            P +      +    S D     F      + +A                 +     +  
Sbjct: 143 APFSE-----TANSYSGDDNFIEFEVGPGGNKMA-----------------VNVPGSRLF 180

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGA 265
           D                  R+                        +   + L   L +G 
Sbjct: 181 DVVG------------GTSRL------------------------LQMMDDLKSALENGD 204

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
              ++  M++ + + L  ++  RA +G     I+  +  LQN N      +SK+   +  
Sbjct: 205 HQAVSS-MIADIDKQLENVLSVRAEVGAKSNRIDLIQNRLQNDNYNFTALLSKNEDADMA 263

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                L    N    S     ++ + S++++L
Sbjct: 264 EVITNLKMDENVYRASLAAGARIIQPSLIDFL 295


>gi|108562722|ref|YP_627038.1| flagellar hook-associated protein FlgL [Helicobacter pylori HPAG1]
 gi|107836495|gb|ABF84364.1| putative flagellar-hook associated protein 3 [Helicobacter pylori
           HPAG1]
          Length = 828

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAKNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 36.6 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI---SEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++ +      I +  A  G    + +NI      L+ +   I 
Sbjct: 728 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGSHGKAFENIIRRNEVLKTQVQSIR 787

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 788 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 828


>gi|149173750|ref|ZP_01852379.1| probable flagellar hook-associated protein 3 [Planctomyces maris
           DSM 8797]
 gi|148847280|gb|EDL61614.1| probable flagellar hook-associated protein 3 [Planctomyces maris
           DSM 8797]
          Length = 753

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 51/141 (36%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           ++ +  R+ +   +   +  KL +++ TGQ      +        +  +       +   
Sbjct: 13  STMLSNRLKVSLNDNALELAKLQQQVSTGQKYSLASESPGAALRTIILQSTFERQQQYQS 72

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           + +     L+ S+  LSS+   +       +  +   + + +    A  +       +  
Sbjct: 73  NINTSMSILAMSETSLSSVGDALNSAKAISLSGVGSTSSDAERVALADQIASLRTQVINA 132

Query: 128 ANMTDEGQYLFSGINSSEKPL 148
            N T  GQYLFSG  ++  P 
Sbjct: 133 GNTTFRGQYLFSGSQTNVAPF 153



 Score = 36.2 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 36/88 (40%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
             ++   +   ++ +   R  +G     + E    L+++   I   IS+    +      
Sbjct: 666 IGRIGGLLDTEIARLNRVRGDIGSRMSVLEEADNRLKDQEVKIQESISQDFDTDLTQILV 725

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           +++      E +  +T+   +L++L+YL
Sbjct: 726 EITQRQTAFEANLQVTSSALQLTLLSYL 753


>gi|332305622|ref|YP_004433473.1| flagellar hook-associated protein 3 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172951|gb|AEE22205.1| flagellar hook-associated protein 3 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 408

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/410 (12%), Positives = 123/410 (30%), Gaps = 63/410 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  +++R      +   D   + +++ TG+              ++   +E + I + 
Sbjct: 3   ISTGQLYDRSIRAVLDNQDDLSDVQQQLSTGKKLLRPSDDPVGSAQVIRLTEEIDLINQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +N+L+T  +   +  L ++   +Q     ++    G  D +     A  +    +   
Sbjct: 63  NKNNNLLTNSIEQEETILGNVTDNIQRARQLMIQAGNGILDVDDRKAIAIEIGQIRDQIF 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFD--------------------- 163
              N  +  G+Y+F+G  S+      Y    S  K +F+                     
Sbjct: 123 DAMNSQSANGEYIFAGYQSATPAF-SYTAGASGNKYAFEGDEGLNEIRISNTFSLAMNNS 181

Query: 164 --QMLQGFLEENSKSLLAGQHLEVSSM---NAQQMTDFIKQLEDKFSDDEYWANNWSNAS 218
              + +         + +   +  +S       +   F  Q  D             +A+
Sbjct: 182 GQTVFEDVYARLDSQITSSSGVASASTRISTQNEFDQFHSQNYDPVVAANNEFQISISAA 241

Query: 219 DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI-------------------------- 252
           +      +     +     ++            I                          
Sbjct: 242 EQVTITNVGTGAVVGTQPFISGEPFEFKGQEFTIEGVVGDTVNYALQKPEKKNIAETLND 301

Query: 253 -GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLG----ISEKNINEERVFLQN 307
                  +N++D          L  V   L+ I +  ++LG    +++  +    + L+ 
Sbjct: 302 FYNSLNDENISDQDYAQAISDALIGVDNSLTSIADSISLLGGKLNVAQS-VFASNLDLEI 360

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            N      I     V+   A ++LS     ++ +     K+  LS+ +Y+
Sbjct: 361 SNKTARANI---EEVDYAEAVSELSKQEAALQAAQATFAKVTGLSLFDYI 407


>gi|255654321|ref|ZP_05399730.1| flagellar hook-associated protein [Clostridium difficile QCD-23m63]
 gi|296452610|ref|ZP_06894304.1| flagellar hook-associated protein 3 [Clostridium difficile NAP08]
 gi|296880978|ref|ZP_06904924.1| flagellar hook-associated protein 3 [Clostridium difficile NAP07]
 gi|296258571|gb|EFH05472.1| flagellar hook-associated protein 3 [Clostridium difficile NAP08]
 gi|296427999|gb|EFH13900.1| flagellar hook-associated protein 3 [Clostridium difficile NAP07]
          Length = 310

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 116/352 (32%), Gaps = 44/352 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST  +        ++  +   K++ ++ T +  +       +   IL  + E   +   
Sbjct: 3   VSTGMMSSSYLNSLQDNLQRLDKVNRQVNTTKEINKLSDNPYKAIKILNSKSEIKTMEIY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +       L T+   L  + K++ D+   LV   +G   +++    +    +  +   
Sbjct: 63  VENCKDTGNWLETTDTALDQLGKLLSDIKKTLVASGDGAYSDDELKTLSNETNEKIKEIA 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N T EG+Y+FSG N+   P+      D      F+  +     ++S S+   Q + V
Sbjct: 123 NALNATHEGKYIFSGSNTGIPPVECVDNADGSVSLKFNSSIDLNKLKDSLSMDVAQGISV 182

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
              N +  +      +    ++             NI  ++            N      
Sbjct: 183 -DYNVKLSSLGFDPTKTDPFEELN-----------NISKKL-----------ANPDA--- 216

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
                              A   LT   L  ++Q +   +  R++ G     +   +   
Sbjct: 217 ------------------DAIKELTTTCLGEMEQLIENTVNVRSIYGTKANTVEAMKEKN 258

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    +   +S++  ++      QL       + S     KL  +SIL+Y+
Sbjct: 259 DDSLIQLKEILSQNEEIDYGEKLVQLKAAELTYQASLQTGGKLFSVSILDYI 310


>gi|316932792|ref|YP_004107774.1| hypothetical protein Rpdx1_1419 [Rhodopseudomonas palustris DX-1]
 gi|315600506|gb|ADU43041.1| hypothetical protein Rpdx1_1419 [Rhodopseudomonas palustris DX-1]
          Length = 535

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 68/192 (35%), Gaps = 7/192 (3%)

Query: 17  ILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRL 76
                L      L +++ +G+ S+    +G   +  +    +  +IA    + + +T R+
Sbjct: 15  TGILNLRSQLETLTQQLSSGRISNDYAGVGTGRSLAIGLRAQMANIASYSDTMTNITTRI 74

Query: 77  STSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQY 136
           S +   L  M +I  ++ G  V       +  + P       D ++S V   N     +Y
Sbjct: 75  SVANLSLQRMAEISSEVKGAAVSAGSTLDNTGQTPGQRTAALDFFDS-VDMLNAQVGDRY 133

Query: 137 LFSGINSSEKPLNGYF---TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQM 193
           LF G  +   P+         D  A     Q+++   + +  +   G+ +  +   A  +
Sbjct: 134 LFGGRVTDTAPVTAADKIMDGDGAAIAGLKQVVRERHDADVGTDGMGRTIVSAGATATAV 193

Query: 194 T---DFIKQLED 202
               DF      
Sbjct: 194 QIGEDFAANPYA 205



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 69/210 (32%), Gaps = 10/210 (4%)

Query: 153 TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN 212
               LA  S  +    F        +AG     ++ +  Q+          ++ +    +
Sbjct: 331 ANGPLAAASAIKAGDDFFSNTPPLRVAGTAPFGAATS--QVAGTKANTIFWYNGEP---D 385

Query: 213 NWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTK- 271
           + S+ +      +I D   +   A  + + +R  +    +     +      +   +   
Sbjct: 386 SASDPARGTAVAKIDDAITVQYGARADEQALRKQLQTVAVFAAVTTSATDPYSSGKIAGL 445

Query: 272 ----KMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
                    V  G   I   +A L  ++ +I            +  T +S   G+     
Sbjct: 446 NQRVAANLAVVPGEQSIQNMQAELAGAQASIKATSNRQVQGKALAQTMLSSIEGINNDEV 505

Query: 328 HAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++  L   ++ SY  T++L +LS++ +L
Sbjct: 506 ATKILALQTALQASYQTTSQLYQLSLVKFL 535


>gi|134095090|ref|YP_001100165.1| putative flagellar hook-associated protein 3 [Herminiimonas
           arsenicoxydans]
 gi|133738993|emb|CAL62041.1| putative flagellar hook-associated protein 3 FlgL-like
           [Herminiimonas arsenicoxydans]
          Length = 403

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/400 (14%), Positives = 123/400 (30%), Gaps = 48/400 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST++IFE  +    +L    +K  +++ T +             + L  EQ  +   + 
Sbjct: 3   ISTNTIFEMGSGKIGDLQAAMLKTQQQISTNRRILAPSDDPVAAAAALGMEQAISINDQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       LS  ++ L S+  ++Q +   ++    G  D+ +  + A  LR +++  +
Sbjct: 63  ATNRLSAKAALSEEESILQSVTLLLQSVKDIVISAGNGALDDVQRQMFATQLRGNFDELM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL------NGYFTKDS------------LAKKSFDQML 166
             AN  D  G Y+F G  SS  P         Y                  +  S   + 
Sbjct: 123 GLANTRDSNGNYIFGGFQSSSPPFMQSATGADYTGDQGQRMLQVGPARQLASGDSGSAVF 182

Query: 167 QGFLEENSKSLLA-------------GQHLEVSSMNAQQMT------------DFIKQLE 201
           +G +  N + + A             G   +++ +                   ++    
Sbjct: 183 EGGVTGNGRFVTAAGLGNTGTGIVSMGSVSDLTQLTGLAYDVTFSVDAITGETTYLVNEP 242

Query: 202 DKFSDDEYWANNWSNASDHNIKYRI----KDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
              +       +        +++ I     D +   V  + N      I  +    +   
Sbjct: 243 PPATPTPQLYVSGDPIEIGGMRFDIKGKPADGDTFSVKPSTNQSVFTTITDLLTTLSTSA 302

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
                            + +   L  I   R  +G   K I+       +        +S
Sbjct: 303 VGPTGQTRLANGLASANTNIANVLDNISTVRTSVGARLKEIDNLDSAGADLKLQYTKTLS 362

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++   A+++ +     +E +     K+  LS+ N L
Sbjct: 363 DLQDIDPVEAYSRFTQQQFTLEAARQSFIKISGLSLFNML 402


>gi|307699994|ref|ZP_07637045.1| flagellar hook-associated protein 3 [Mobiluncus mulieris FB024-16]
 gi|307615032|gb|EFN94250.1| flagellar hook-associated protein 3 [Mobiluncus mulieris FB024-16]
          Length = 336

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 128/359 (35%), Gaps = 27/359 (7%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
             T ++TS +        +   +     +E+M +G+   +     A   S +   +E   
Sbjct: 1   MITRVTTSMMANDTLANVQNNFQRLADANEKMASGKRMKFASDDPASSVSSMRLRKELAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   +       + T+ + + ++ K+       L+  + G          A  LR + 
Sbjct: 61  TEQYKRNIDDAQSWMQTADSAMDTVSKLYLHSKTKLINSVSGAMGKESLHALAADLRQNA 120

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           ++ +T AN T  G+ +F+G              +S     F         +++   L   
Sbjct: 121 QAIMTQANKTYLGRTVFAG--------------NSDKGVVFKT------GKDANGDLQFM 160

Query: 182 HLEVSSMNAQQMTDFI---KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
             E  ++ A  +   I     L      ++ +        +  I  +    +G  V  + 
Sbjct: 161 QTEADNVTAMPVDRRINAYTTLPANVDGNKLFGTGTIRYVEGPINEQTGLPDGFAVDDSN 220

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           N   +  ++  A I  E        G + +  ++ LS  ++    +   ++ LG   K +
Sbjct: 221 NPSVMNLLVEAARIM-ETGDLGGEKGEKILAIQRELSRREKL---LHTNQSDLGARHKQV 276

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            E +  + +    + T IS    V+  +A  ++S      + +   T+++ + S+L+YL
Sbjct: 277 LEAQDNVVSDIQAVKTQISGVEDVDIQSATIEMSLAHMAYQAALGSTSRVVQPSLLDYL 335


>gi|17548573|ref|NP_521913.1| flagellar hook-associated protein 3 [Ralstonia solanacearum
           GMI1000]
 gi|17430821|emb|CAD17503.1| probable flagellar hook-associated protein 3 [Ralstonia
           solanacearum GMI1000]
          Length = 316

 Score = 64.0 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 120/353 (33%), Gaps = 42/353 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+  F       +    + VKL +++ TG + +      A +  +L+ +Q ++   + 
Sbjct: 3   VSTAQFFSASTSSMQTTQSNLVKLQQQISTGIALNAAGDNPAAMGQVLQLQQSQDTNDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      RL+T  + LS +   +Q      +        +++       ++  Y+  +
Sbjct: 63  QVNRDATNARLNTVSSALSDVIATLQQGKQSTIAANTTLLTDSQRVGILAQVKQQYQQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  G  LF+G N +  P                     F+         G    
Sbjct: 123 STANQRDASGVALFAGANGTTAP---------------------FVSSGGSVQYVGSGQP 161

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +   AQ +                  +  ++ S  ++  R+ +++    + N N    +
Sbjct: 162 PTVQVAQDI------------------SMPNSVSGDSVFVRVPNSDV--SNPNANQSVFK 201

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
               +    ++ ++ +    A     +     +       ++ +  +G  +  I      
Sbjct: 202 TYENLITALSKPITTSADVTAIQTAVQTAQGNLDSAYQVALQAQVTVGTQQAQITTLNSS 261

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             N    +   ISK   V+  +A +Q S     ++ +    + +Q LS+  Y+
Sbjct: 262 GSNFGEQLKEQISKLQSVDYTSAISQFSQQQVSLQAAQKTFSAMQGLSLFQYI 314


>gi|262276409|ref|ZP_06054218.1| flagellar hook-associated protein FlgL [Grimontia hollisae CIP
           101886]
 gi|262220217|gb|EEY71533.1| flagellar hook-associated protein FlgL [Grimontia hollisae CIP
           101886]
          Length = 397

 Score = 64.0 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 134/400 (33%), Gaps = 47/400 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSIL---EWEQE 58
             + I++   ++ ++              +E+ TG+     L  G    S +    + Q+
Sbjct: 1   MISRIASFHNYQSVSNDLMRQQVKLQDNQDELATGKRV---LTAGDDPVSSIYIQNFRQQ 57

Query: 59  KNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLR 118
              + + + S +L   R + ++  +   +++V       + ++ G    +    +   L+
Sbjct: 58  DKQLDQYVDSITLARNRQTRAEIAIDDAEQLVDSAKRKTMEMINGSLSEDDRTAHRQDLK 117

Query: 119 DSYESFVTFANMTD-EGQYLFSGINSSEKP------LNGYFTKDSLAKKSFDQMLQGFLE 171
             Y++F+   N  D  G +LFSG  SS++P      LN  +  DS  + +          
Sbjct: 118 GLYDNFMNLVNAKDESGNFLFSGTQSSKQPFYRDGALNVRYAGDSYHRTAQVAPAVEVQT 177

Query: 172 ENSKS-------LLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY 224
            +             G +     +N+  +    +      +D+  +A +++        Y
Sbjct: 178 SDPGDEVFMTIKNPFGDYQPEYELNSGSLLLLAQAKNSNNTDNAEYAVSFTVDGAGQTTY 237

Query: 225 RIKDTEGIDVSANVNMR----------GIRDIMF-----------------VAVIGTEFL 257
            +     +  S   + +               M                      G E  
Sbjct: 238 ELTQDGNVVSSGVYDPQTGVQWGTLSLSFEGEMLDGDRIVLERQDTFNVFDAFKKGIELS 297

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
            +++ D +      ++          + + R+ +G     ++ +    ++   +++  + 
Sbjct: 298 YESIFDASATAELHQVTEQFSAAFKHLNKARSEVGTRLTTLDRQESMHKDFKLVLNRSLG 357

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++  TA   ++  +  ++ S     K + LS+ NY+
Sbjct: 358 TMEDLDYSTAVIDMNENMLALQASQQAFAKTKDLSLFNYI 397


>gi|119503651|ref|ZP_01625734.1| Flagellin-like protein [marine gamma proteobacterium HTCC2080]
 gi|119460713|gb|EAW41805.1| Flagellin-like protein [marine gamma proteobacterium HTCC2080]
          Length = 402

 Score = 64.0 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/400 (13%), Positives = 119/400 (29%), Gaps = 50/400 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S++ ++        E      ++ E++ +G+              I+    E N +   
Sbjct: 5   VSSNQVYRTGIGSILEAQSKLSRIQEQVASGKRIQNPSDDPGAAAEIVRLRSELNRVETY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESF 124
             +       LS  ++ ++  + ++Q      V    +G  + +   I A  +    +S 
Sbjct: 65  QRTADQAISSLSFEESAVAGAESVLQRARELAVQGANDGALNASDREIIAAEIDGLRDSL 124

Query: 125 VTFANM-TDEGQYLFSGINSSEKPLNGYFTK--------------DSLAKKSFDQMLQGF 169
           +   N    +G+Y+F+G   +    +                    S  +   +      
Sbjct: 125 LNIGNTRNADGEYIFAGDKVNTAAFSESNGAVTYEGSGGPRLVNIASGIRLQTNDTGATV 184

Query: 170 LEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDH---NIKYRI 226
            +  +      +     S     +       +  F   E +   +S+        I    
Sbjct: 185 FQGAAAGNGQFEVSATGSNTGTGVV-GATGFDGTFPGTENYTITFSSVGGQLKYAITGST 243

Query: 227 K-----------------------------DTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                                           +   V+A         +  ++       
Sbjct: 244 SGAIGAAQDYVSGEDITFAGATVKIEGAPEAGDTFAVTAGGTQSAFDTLTELSAALRTQG 303

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
           S    D  R     + L  +   L  I + R  LG     ++E+     + N  I++ IS
Sbjct: 304 SAA-KDAQRATAVGQALQNIDASLGQINKVRTDLGARLNRVDEQISLNASFNFQIESTIS 362

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           K   ++  TA  +L+  +  +E +     K Q +S+ NYL
Sbjct: 363 KLEDLDFATAVTELNLQLVALEAAQQTYIKTQGISLFNYL 402


>gi|144899351|emb|CAM76215.1| phase-1 flagellin [Magnetospirillum gryphiswaldense MSR-1]
          Length = 501

 Score = 64.0 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 23/235 (9%)

Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS---SMNAQQMTDFIK 198
           N +  P        S    +  Q+       ++        +      ++  + +     
Sbjct: 270 NLTFTPGTDTIQVSSTTGFAVGQVFTVAGTTSNDGSYKVSSIAAGPPDTITVESVKVGAT 329

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
           +        E W        + +I+ RI     + +    +            +  +   
Sbjct: 330 ETVAATLSSESW----YKGDNISIEQRIDQDRTVAIGIFASDPAFEKAFRAMGLIAQGNY 385

Query: 259 KNLT---------DGARNVLTKKMLSTVQQG-------LSGIIEQRAVLGISEKNINEER 302
                        + AR ++   ML              S +   R+ LG+++  I  + 
Sbjct: 386 GTAGGLENNMERVEQARYLIRDSMLHPAGNSAPFGTEESSDLESVRSQLGVTQNLIKTKT 445

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              Q+    +D  I     V+++ A   L      +E  Y   +K++++S++N+L
Sbjct: 446 EKHQSYIGFLDDRIISMENVDKNEAITLLLDDQRALEAGYQALSKVREMSLINFL 500



 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 7/172 (4%)

Query: 16  NILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKR 75
            I   +   +   L   +VT + S     + A    ++ +E EK      +++N+ +   
Sbjct: 16  RITAVQERVNMRTLQ--VVTEKKSPNYTGISADANRLINFENEKARSQAFINNNASLQTT 73

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKT-DNNKFPINAGMLRDSYESFVTFANMTDEG 134
           +  +   L++++K ++     L      K            +   S     ++ + + +G
Sbjct: 74  IGLADVSLTAVEKTMKTFRDRLETFYTNKNRTQQDIESIQTLAFQSMIDMQSYLSSSADG 133

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS 186
           +YLFSG   S++P+       +    +F  +  GF      +  A     V+
Sbjct: 134 KYLFSGGLVSQEPVQ----LPAATHDAFKDIYDGFSVTYPTTRDAHMVDTVT 181


>gi|283784871|ref|YP_003364736.1| flagellar hook-associated protein 3 [Citrobacter rodentium ICC168]
 gi|282948325|emb|CBG87910.1| flagellar hook-associated protein 3 [Citrobacter rodentium ICC168]
          Length = 317

 Score = 64.0 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 116/353 (32%), Gaps = 42/353 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++++          + ++  E+M +G+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYQQNMRGITTSQAEWIRYGEQMSSGKRVVNPSDDPIAASQAVVLSQAQAQNSQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  ++ LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEESVLSEVTTAIQAAQEKIVNAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  + E P        S   +S  Q             +      
Sbjct: 123 NLANSTDGNGRYIFAGYKTGEAPFAQADGTYSGGTESITQ------------QVDSARTM 170

Query: 185 VSSMNAQQMTDFIK-QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           V      ++ D I      + + D+   N +                 +D +        
Sbjct: 171 VIGHTGDKIFDSITSNAVPEPNGDDSETNLF---------------RMLDSAIEA----- 210

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                   + +     +        +  K    ++  L+ ++  RA LG     ++    
Sbjct: 211 --------LNSPVGDDDALKEQAKAVIDKTNRGLKNSLNNVLGVRAELGTQLSELSSLDS 262

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
              ++       +S  + V+ +   +        ++ SY   + +Q +S+  +
Sbjct: 263 LGSDRALGQKQQMSDLVDVDWNEVISSYVMQQAALQASYKAFSDMQGMSLFQF 315


>gi|297538903|ref|YP_003674672.1| flagellar hook-associated protein 3 [Methylotenera sp. 301]
 gi|297258250|gb|ADI30095.1| flagellar hook-associated protein 3 [Methylotenera sp. 301]
          Length = 304

 Score = 64.0 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 117/353 (33%), Gaps = 52/353 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST++I++        +  D  KL E++ TG+               LE    ++  A+ 
Sbjct: 3   ISTNTIYQAGISRISNIQSDQAKLQEQISTGRRISSPSDDPVGAARALEISAAQSGNAKF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      +L+T +++L+S+  ++      LV        + +    A  L+ S ++ +
Sbjct: 63  ADTRQTAQLKLNTLESNLTSITSLLVSTQSTLVGAGNATLSDTERGFMASELKGSLDALI 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G YL++G  +S  P     +  + A  S  Q+LQ   +        G    
Sbjct: 123 GLANTQDASGNYLYAGYKTSTVPFVATASGANYAGDSNQQLLQVDTQRQMAINATG---- 178

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
                                      +N   A  +++   + +   +  +   N     
Sbjct: 179 ---------------------------DNVFQAGGNDVFATLSNLVTLLNTPITNAA--- 208

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                            +  A N      + +++  +  ++  RA +G     I+     
Sbjct: 209 -----------------SQAAYNAGLSTAIGSLKGSVDNVLNVRADIGAKLNEIDNLDTA 251

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++       +S     +  +A + L+     +E +     ++  LS+   L
Sbjct: 252 GSDRALQYSKSLSDLQDTDYASALSDLAKQQTIMEAAQKSFVQITSLSLFKLL 304


>gi|210134493|ref|YP_002300932.1| flagellar hook-associated protein FlgL [Helicobacter pylori P12]
 gi|210132461|gb|ACJ07452.1| flagellar-hook associated protein 3 [Helicobacter pylori P12]
          Length = 828

 Score = 64.0 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMINVANTSIGGEFLFGGSKVDRPPIDS 147


>gi|109899395|ref|YP_662650.1| flagellar hook-associated protein FlgL [Pseudoalteromonas atlantica
           T6c]
 gi|109701676|gb|ABG41596.1| flagellar hook-associated protein 3 [Pseudoalteromonas atlantica
           T6c]
          Length = 408

 Score = 64.0 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/410 (13%), Positives = 125/410 (30%), Gaps = 63/410 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  +++R      +   D   + +++ TG+              ++   +E + IA+ 
Sbjct: 3   ISTGQLYDRSIRAVLDNQDDLSDVQQQLSTGKKLLRPSDDPVGSAQVIRLTEEIDLIAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +N+L+T  +   +  L ++   +Q     ++    G  D N     +  +    +   
Sbjct: 63  NKNNNLLTNSIEQEETILGNVTDNIQRARQLMIQAGNGILDVNDRNAISIEIGQIRDQIF 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAK---------------KSFDQMLQGF 169
              N  +  G+Y+F+G  SS      Y    +  K                +F   +   
Sbjct: 123 DAMNSQSANGEYIFAGYQSSTPAF-SYTAGAAGNKYVFEGDEGLNDIRISNTFSLAMNNS 181

Query: 170 LEENSKSLLAGQHLEVSSMNA-----------QQMTDFIKQLEDKFSDDEYWANNWSNAS 218
            +   + + A    +++S +             +   F KQ  D  +             
Sbjct: 182 GQTVFEDVYARLDSQITSTSGVASASTRISAQSEFDQFHKQNYDPVTPANNEYQISITGV 241

Query: 219 DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL--------------------- 257
           D      +     +      +            I                          
Sbjct: 242 DEVTITNVGTGTVVGTQPYTSGEPFEFQGQEFTIEGAVGDTVNYTLQKPEKKNIAETLND 301

Query: 258 ------SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLG----ISEKNINEERVFLQN 307
                  +N++DG         L  V   L+ I +  ++LG    +++  +    + L+ 
Sbjct: 302 FYNSLRDENISDGDYEQAISDALIGVDNSLTSIADSISLLGGKLNVAQS-VFASNLDLEI 360

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            N      I     V+   A ++LS     ++ +     K+  LS+ +Y+
Sbjct: 361 SNKTARANI---EEVDYAEAVSELSKQEAALQAAQATFAKVTGLSLFDYI 407


>gi|261837740|gb|ACX97506.1| flagellar-hook associated protein 3 [Helicobacter pylori 51]
          Length = 828

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSNINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 36.2 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI---SEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++ +      I +  A  G    + +NI      L+ +   I 
Sbjct: 728 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGSHGKAFENIIRRNEVLKTQVQSIR 787

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 788 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 828


>gi|308063157|gb|ADO05044.1| flagellar hook-associated protein FlgL [Helicobacter pylori Sat464]
          Length = 828

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSNINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147


>gi|297379517|gb|ADI34404.1| Hypothetical protein HPV225_0313 [Helicobacter pylori v225d]
          Length = 826

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSNINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 36.2 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 726 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIR 785

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 786 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 826


>gi|194015752|ref|ZP_03054368.1| flagellar hook-associated protein 3 [Bacillus pumilus ATCC 7061]
 gi|194013156|gb|EDW22722.1| flagellar hook-associated protein 3 [Bacillus pumilus ATCC 7061]
          Length = 303

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 108/347 (31%), Gaps = 55/347 (15%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
              +     +  +   K++E+  TG+               L++        +   + + 
Sbjct: 10  QNSLRN-ISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNE 68

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
               + TS+  ++ +  I+ ++   ++    G             +    +  +   N  
Sbjct: 69  AQNWIDTSETSVTEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQ 128

Query: 132 DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
             G+++F+G N++ KP+         A  +F    + + + NS        + + ++N+ 
Sbjct: 129 MLGKFVFNGTNTNVKPVVE------NADGTFTFNFENYTDANSVKSNISDGITL-NVNSN 181

Query: 192 QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEG-IDVSANVNMRGIRDIMFVA 250
            ++ F                    AS  N+   + D E  +      N           
Sbjct: 182 PISAF----------------GGQTASGQNVIEMLTDLENSLKNGTFANS---------- 215

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
                                  L ++ Q    +  +R+ LG     ++     L ++  
Sbjct: 216 --------------------DDALGSIDQFKEVMSAERSDLGARSNRVDLVGSRLTSQFE 255

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++    S +  VE   A   L         +   T K+ + S++++L
Sbjct: 256 VLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQPSLVDFL 302


>gi|292487946|ref|YP_003530821.1| flagellar hook-associated protein 3 [Erwinia amylovora CFBP1430]
 gi|292899165|ref|YP_003538534.1| flagellar hook-associated protein 3 [Erwinia amylovora ATCC 49946]
 gi|291199013|emb|CBJ46124.1| flagellar hook-associated protein 3 [Erwinia amylovora ATCC 49946]
 gi|291553368|emb|CBA20413.1| Flagellar hook-associated protein 3 [Erwinia amylovora CFBP1430]
 gi|312172067|emb|CBX80324.1| Flagellar hook-associated protein 3 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 321

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 112/349 (32%), Gaps = 36/349 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST  I+++     +  N   +K   E+ TG   +            +   Q ++  ++ 
Sbjct: 3   LSTGMIYDQQIQGIQTANSSWLKAGNELATGNRVNKPSDDPVAAAQAVVLSQAQSETSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    T+  ST +  L  +  +V      +V    G   +      A  L       +
Sbjct: 63  ETARVFATQNQSTEETTLKQVADVVISAQTTVVAASTGTLSDEDRASFATQLEGIRGQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y F+G  S + P        S A      +                   
Sbjct: 123 NLANSTDGNGRYTFAGYQSDKAPFT------SDAGGQITYIGGTIPITQKVDA---SRTL 173

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V++   +Q+ D +     K  D     +N     +  IK                     
Sbjct: 174 VTNHTGKQVFDSLTSDAVKEPDGAAGESNIFTILNTAIKS-------------------- 213

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                 +  +   +   T  A      K+   ++  L+ +   R+ +G + + ++     
Sbjct: 214 ------LKVSLTGADKATADAEGENMAKVNRGLRNVLNNVSSVRSEIGTNLQELSNLDSK 267

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             +    +   +S  +G +   A ++ +     ++ SY +  ++ KLS+
Sbjct: 268 GDDTTLSLKNQMSTLVGADTTEAISRYTMQQTALKASYTVFQQMSKLSL 316


>gi|261339383|ref|ZP_05967241.1| flagellar hook-associated protein 3 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318184|gb|EFC57122.1| flagellar hook-associated protein 3 [Enterobacter cancerogenus ATCC
           35316]
          Length = 317

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 107/353 (30%), Gaps = 48/353 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++E+      +     +   E+M +G+  +         +  +   Q ++  ++ 
Sbjct: 3   ISTQMMYEQNMRGITDSQSRWLGYGEQMSSGKRVNRPSDDPIAASQAVVLSQAQSQNSQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  +  L  +   +Q     +V    G   +N     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEENVLGQVTTAIQSAQEKIVYAGNGSLSDNDRASLATDLKGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             AN TD  G+Y+F+G  +   P +     Y        +  D      +          
Sbjct: 123 NLANSTDGNGRYIFAGYKTDNVPFDQTNGDYSGGSEAISQQVDSARNMQISH-------- 174

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                      ++ D          D      N     D  I      TE      +   
Sbjct: 175 --------TGSEVFDKFTSNAKPEPDGSTPETNLFKILDKAIDALNTPTESDQTKMDALT 226

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
             I                            +    +   L  ++  RA LG     +++
Sbjct: 227 DSI---------------------------NQANRGLSNALDNVLTVRADLGTKLTELDK 259

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                 ++       +S  + V+ + A +  +     ++ SY   + +Q +S+
Sbjct: 260 LDALGDDRALGQTQQMSDLVDVDWNAAISSYTMQQAALQASYKAFSDMQGMSL 312


>gi|308182470|ref|YP_003926597.1| flagellar hook-associated protein FlgL [Helicobacter pylori PeCan4]
 gi|308064655|gb|ADO06547.1| flagellar hook-associated protein FlgL [Helicobacter pylori PeCan4]
          Length = 828

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMINVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 35.8 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 89/265 (33%), Gaps = 26/265 (9%)

Query: 102 EGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKS 161
               D      N    R   ++     N +          N+    +    + +  +K+S
Sbjct: 581 PTSADIQASKPNEVTYRQLMDAMSIALNYS----------NTD-PAIYQQISDNPTSKES 629

Query: 162 FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY-WANNWSNASDH 220
            D    G L++   +L    + E   +    M    K     F  D   ++ N  ++   
Sbjct: 630 KD-RFIGLLKQAKGNLSINLNEEGKVIIQDNMHSNTKMQFMLFDKDANDFSQNALHSDKP 688

Query: 221 NIKYRIKDTEGIDV-SANVNMR------GIRD-IMFVAVIGTEFLSKNLTDGARNVLTKK 272
           ++K    +   ID  S N   +       +R  I     +G  + S     G +N +T  
Sbjct: 689 SLKLNANNALIIDKPSVNFFDQLENIITSVRKGIYRPDALGDTYSSDMRNLGIQNGIT-- 746

Query: 273 MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLS 332
           ++  +   +  +I +    G + +NI      L+ +   I     ++ G +    + + S
Sbjct: 747 LIDHLSDHVEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIRG---ETTGTDMAETYNKFS 803

Query: 333 TLINKIEMSYMITTKLQKLSILNYL 357
            L N        T K+  LS+  YL
Sbjct: 804 NLTNNYNAVLASTNKINNLSLTKYL 828


>gi|109947146|ref|YP_664374.1| flagellar hook-associated protein FlgL [Helicobacter acinonychis
           str. Sheeba]
 gi|109714367|emb|CAJ99375.1| flagellar hook-associated protein FlgL [Helicobacter acinonychis
           str. Sheeba]
          Length = 827

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNHYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLNQGIDVAQNAYTATLNTDKALQEFSKTMETFKTKLIQSANDVHSETSRTAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMINIANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 37.4 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 727 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGTHGKAFENIIRRNEVLKTQVQSIR 786

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 787 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 827


>gi|148258438|ref|YP_001243023.1| hypothetical protein BBta_7240 [Bradyrhizobium sp. BTAi1]
 gi|146410611|gb|ABQ39117.1| hypothetical protein BBta_7240 [Bradyrhizobium sp. BTAi1]
          Length = 588

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 13/211 (6%)

Query: 152 FTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA 211
            +   LA  S  +  Q F    S   LA + ++ S+                +  +    
Sbjct: 385 ASDTVLAASSTVRATQDFFAGQSAPGLAARRIDFSAATPAYAQIASTSTVTWYRGEGS-- 442

Query: 212 NNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL---TDGARNV 268
              + A    +  +   T  + V A  N   +R  +          S      +      
Sbjct: 443 ---TAAPREAVVVQASSTSALAVGARANEDALRSALAGFASVAASGSGTTTAASTERSKS 499

Query: 269 LTKKMLSTV--QQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
           L  + L+ +  ++ + GI       G+++  ++E +   +    I  T + +        
Sbjct: 500 LASRALALLPTREAVDGITN---DFGLAQAALSEAQSENKAIRAIHRTQLDRLESAPAEA 556

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             A+L +L N+++ SY +T  + KLS++NYL
Sbjct: 557 VVAELVSLQNRLQASYQVTAMISKLSLVNYL 587



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 6/132 (4%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
              L +   +L  ++ +G+  +   +LGA  +  L      + +       +    R+  
Sbjct: 22  LMALKQQIDQLSSQLSSGRVGETFAELGASRSDSLSARAMLSALDGYDVGITSAQPRVQL 81

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
               ++ + K V  +   LV    G   +          RD  ES +   N    G+Y+F
Sbjct: 82  ISTSVAQISKSVVTLRNALVSNNPGPGASEAL------ARDGLESTIAALNQQIGGRYVF 135

Query: 139 SGINSSEKPLNG 150
            G      P+  
Sbjct: 136 GGREDRMPPVAS 147


>gi|317008945|gb|ADU79525.1| flagellar hook-associated protein FlgL [Helicobacter pylori India7]
          Length = 828

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAHTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRTAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 36.2 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 728 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIR 787

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 788 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 828


>gi|15644923|ref|NP_207093.1| flagellar hook-associated protein FlgL [Helicobacter pylori 26695]
 gi|2313393|gb|AAD07364.1| flagellin B homolog (fla) [Helicobacter pylori 26695]
          Length = 828

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 KEHMINVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 35.8 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 728 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIR 787

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 788 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 828


>gi|90423519|ref|YP_531889.1| hypothetical protein RPC_2015 [Rhodopseudomonas palustris BisB18]
 gi|90105533|gb|ABD87570.1| hypothetical protein RPC_2015 [Rhodopseudomonas palustris BisB18]
          Length = 587

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 9/209 (4%)

Query: 152 FTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA 211
             + SLA  S  +  Q F   ++ + LA + ++ +       +   +     +  +    
Sbjct: 384 AAETSLAASSTIRATQDFFAGSNVAGLAPRRIDFTGAVPAYASTSSETTVIWYRGETSPT 443

Query: 212 NNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARN---V 268
           +        +   R   T  + + A  N   IR I+          + +    A +    
Sbjct: 444 D-----PRTSFAVRTGATSTVGIGARANEEAIRTILSGFAAVAVGSAASAFTQAADRWKA 498

Query: 269 LTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
           L ++  S + Q    +       GI+  +++E +   +    I+ + +     V      
Sbjct: 499 LAERSASLLPQE-EPLKAISTEFGIASSSLSEAQARNKAARGIVQSQVDGIESVSSQEIA 557

Query: 329 AQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +L  + N+++ SY +T  L KLS++NYL
Sbjct: 558 VKLLDVQNRLQTSYQVTAMLLKLSLVNYL 586



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 74/231 (32%), Gaps = 13/231 (5%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
             R       L +    L  ++ +G+ ++   +LG R +  L      + +     + S 
Sbjct: 14  TSRQTADLLALKEQVNTLTRQLSSGRVAETYAELGVRRSESLSARGMLSALDGYDAAISS 73

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
           V  R+  + A L  + K+   +   L         N        M RDS    +   N  
Sbjct: 74  VRPRVELASASLGRISKMTTTLRNGLTTNRSDADANRA------MARDSLNGAIDALNQQ 127

Query: 132 DEGQYLFSGINSSEKP-------LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             GQYLF G   ++ P       LNG  +           ++   +  +  + L    L 
Sbjct: 128 LGGQYLFGGREVTQAPVLSGIILLNGDTSDPVKPLAGVKTLVNEQIRADLGTGLGRLTLS 187

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
             S  + ++ +               A   S+ S   I Y     EG  +S
Sbjct: 188 TPSSTSIEVREDADASARANLGFSISAQPTSSGSFATISYAASPPEGATLS 238


>gi|254778998|ref|YP_003057103.1| flagellar hook-associated protein FlgL [Helicobacter pylori B38]
 gi|254000909|emb|CAX28845.1| Flagellar hook-associated protein 3 (HAP3) (Hook-filament junction
           protein) [Helicobacter pylori B38]
          Length = 828

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAHTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147


>gi|269976256|ref|ZP_06183252.1| flagellar hook-associated protein 3 [Mobiluncus mulieris 28-1]
 gi|269935585|gb|EEZ92123.1| flagellar hook-associated protein 3 [Mobiluncus mulieris 28-1]
          Length = 336

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 128/359 (35%), Gaps = 27/359 (7%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
             T ++TS +        +   +     +E+M +G+   +     A   S +   +E   
Sbjct: 1   MITRVTTSMMANDTLANVQNNFQRLADANEKMASGKRMKFASDDPASSVSSMRLRKELAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   +       + T+ + + ++ K+       L+  + G          A  LR + 
Sbjct: 61  TEQYKRNIDDAQSWMQTADSAMDTVSKLYLHSKTKLINSVSGAMGKESLHALAADLRQNA 120

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           ++ +T AN T  G+ +F+G              +S     F         +++   L   
Sbjct: 121 QAIMTQANKTYLGRTVFAG--------------NSDKGVVFKT------GKDANGDLQFM 160

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV--- 238
             E  ++ A  +   I       ++ +     +   +   +   I D  G+  S  V   
Sbjct: 161 QTEADNVTAMPVDRRINAYTTLPANVDG-NKLFGTGTIKYVPGPIDDETGLPTSFEVDDG 219

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           N   + +++  A    E        G + +  ++ LS  ++    +   ++ LG   K +
Sbjct: 220 NNPSVMNLLVEAARLMETGDLGGEKGEKILAIQRELSRREKL---LHTNQSDLGARHKQV 276

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            E +  + +    + T IS    V+   A  ++S      + +   T+++ + S+L+YL
Sbjct: 277 LEAQDNVVSDIQAVKTQISGVEDVDIQAATIEMSLAHMAYQAALGSTSRVVQPSLLDYL 335


>gi|209695755|ref|YP_002263685.1| flagellar hook-associated protein FlgL [Aliivibrio salmonicida
           LFI1238]
 gi|208009708|emb|CAQ80012.1| flagellar hook-associated protein type 3 FlgL [Aliivibrio
           salmonicida LFI1238]
          Length = 397

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 130/396 (32%), Gaps = 47/396 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSIL---EWEQEKNHI 62
           IS+   ++ +                ++ +G+     L  G    + L      Q+K  +
Sbjct: 5   ISSFHNYQSVQNDISRQEVKLHHNSAQLASGKKL---LTAGDDPVAALYAQNLTQKKEEL 61

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            +   +  L   RL   +  +++ ++   D    ++ ++ G         +A  ++   +
Sbjct: 62  RQYSDTIVLARNRLERHEVAIANAEQFADDAKRSVMEMINGSLAPEDRYAHAQDIKGIAD 121

Query: 123 SFVTFANMTD-EGQYLFSGINSSEKPL-----------NGYFTKDSLAKKSFDQMLQGFL 170
           +F+   NM D  G YLFSG  S  +P               + ++     S +  +    
Sbjct: 122 NFLNLTNMLDESGNYLFSGTKSKTQPFFRANDGTVTYAGDDYQRNLKVSGSIEVAVNDAG 181

Query: 171 EENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKF--SDDEYWANNWSNASDHNIKYRIKD 228
            +    +             Q+ ++ +         +D   +   +S A +    Y++  
Sbjct: 182 NKLFTEIKNPFGDYDPQYALQEGSELLLSKAKNMDYTDTSTYQVAFSAADNGQYNYQLSQ 241

Query: 229 TEGIDVSANVN-MRGIRD--------------------------IMFVAVIGTEFLSKNL 261
              +  SA  N   GI+                           I        E   K++
Sbjct: 242 DGSVVKSAQFNPAEGIKYEGVDIQVRGQLKAGDAITLEPKKTISIFDAFKKAQELSMKDV 301

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
           +D +      ++          + + RA +G  +  ++++    Q+ +  I   +S    
Sbjct: 302 SDASSTAELHQVTEEFHAAFIHLSQARAEVGTRQNTLDQQESQHQDFDLTISKSLSSIED 361

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++   A  + +     ++ S     K++ +++ NY+
Sbjct: 362 LDYAQAVIEFNENTRALQASQQAFGKVKDITLFNYV 397


>gi|170737045|ref|YP_001778305.1| flagellar hook-associated protein 3 [Burkholderia cenocepacia
           MC0-3]
 gi|169819233|gb|ACA93815.1| flagellar hook-associated protein 3 [Burkholderia cenocepacia
           MC0-3]
          Length = 304

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 121/352 (34%), Gaps = 54/352 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I++      M    +  N  +  L  ++ TGQ              +L  E++ + +   
Sbjct: 3   IASQHFGNTMLATLRASNSKAADLTSKISTGQRVQRASDDPIAAARLLLIERDTSVLQRY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   ++ RL  ++ HL  M   V  +   L+   +G          A  LR    +  
Sbjct: 63  QKNIDTLSVRLQKNEVHLDGMLDTVMAVHDSLLSAADGSRSAADLNALAAPLRMRLNNLK 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G +LFSG  ++  P+    T    ++ S+         E  + ++     +
Sbjct: 123 QAANAKDGDGNFLFSGSQTNTAPIAYDATAPVGSRYSY-----AGNGELQQVVIGHGVTQ 177

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +++  + + D + +LE                        I+  E  +V+ +       
Sbjct: 178 HANVTVESLADVMNKLEAA----------------------IEAMEDPEVNPSA------ 209

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                R VLT  + S    G+  +  +   LG ++  ++     
Sbjct: 210 ------------------PAVRGVLTAALDSVKHNGIDALSVKITDLGGAQNTLDLMSEN 251

Query: 305 LQNKNNIIDTYISKSIG-VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
              +  + +      +G ++   A  QL+  I  ++ SY I T++ +LS+ +
Sbjct: 252 HSAQL-VANGQAVSLVGELDFAEAIDQLNNYIAAVKGSYAIYTRMTQLSLFD 302


>gi|317013741|gb|ADU81177.1| flagellar hook-associated protein FlgL [Helicobacter pylori
           Gambia94/24]
          Length = 828

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNHYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMINVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 36.2 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 728 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIR 787

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 788 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 828


>gi|308184098|ref|YP_003928231.1| flagellar hook-associated protein FlgL [Helicobacter pylori SJM180]
 gi|308060018|gb|ADO01914.1| flagellar hook-associated protein FlgL [Helicobacter pylori SJM180]
          Length = 828

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 36.6 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 728 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIR 787

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 788 G---ETTGADMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 828


>gi|208434241|ref|YP_002265907.1| putative flagellar-hook associated protein 3 [Helicobacter pylori
           G27]
 gi|208432170|gb|ACI27041.1| putative flagellar-hook associated protein 3 [Helicobacter pylori
           G27]
          Length = 828

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 36.6 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI---SEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++ +      I +  A  G    + +NI      L+ +   I 
Sbjct: 728 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGSHGKAFENIIRRNEVLKTQVQSIR 787

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 788 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 828


>gi|317012136|gb|ADU82744.1| flagellar hook-associated protein FlgL [Helicobacter pylori
           Lithuania75]
          Length = 828

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147


>gi|15611350|ref|NP_223001.1| flagellar hook-associated protein FlgL [Helicobacter pylori J99]
 gi|4154805|gb|AAD05861.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
           pylori J99]
          Length = 828

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNHYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 KEHMINVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 36.2 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 728 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIR 787

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 788 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 828


>gi|77359729|ref|YP_339304.1| flagellar hook-associated protein FlgL [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874640|emb|CAI85861.1| putative flagellar synthesis; flagellar regulon; hook-associated
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 418

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 128/419 (30%), Gaps = 70/419 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S + +++       +         E + TGQ      +  A ++  + +  +     + 
Sbjct: 3   LSNNLMYQNSINKILQNQNGVANAQERVNTGQKYLSTSEAPADISQAMLYTNKIQSNEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + +  RL T ++ L  + + +Q      +    G    +     A  L +  ++  
Sbjct: 63  TKNINQLNGRLKTEESVLQGINESIQAAKDIALKAGNGAYSKDDLKSLASELTEIQKTLA 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKD-----------------SLAKKSFDQMLQ 167
              N  +++G+Y+FSG   S +P                          ++ KS D    
Sbjct: 123 NLMNTRSEDGKYIFSGYQDSTQPYQFDAASGKYNYQGDQGQHKITIAEGVSIKSSDNGYD 182

Query: 168 GFLEENSKSLLAGQHLEVSS-MNAQQMTD------------FIKQLEDKFSDDEYWANNW 214
            F + N++  +A    + SS +      D            +    +   S      N  
Sbjct: 183 TFEKTNARLDVASNTGDASSTLTGSVYVDKQGVFDQFHKEQYNPDPDPLVSATANTFNVV 242

Query: 215 SNAS------DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI---------------- 252
             A       D     R    +   VS NV    I        +                
Sbjct: 243 VTAGANPGDPDQYEILRDGVAQIPPVSGNVTDEPIEFAGMKIQLSGAAPGQLDFSLEPPH 302

Query: 253 -----------GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLG---ISEKNI 298
                       T   +  L       +    ++ +Q     ++  +A LG      + +
Sbjct: 303 KENVLNTLQGLITGLNNGTLAGDDFQQVLNDGVTQLQNASEQVVFTQASLGGRMNVLERV 362

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    L  +N    +  S  + V+   A ++L+     ++ S     +L KLS+ +Y+
Sbjct: 363 TDSNSALDIQN---QSNRSSLLEVDMAAAISELTQQETALQASQATFGRLAKLSLFDYI 418


>gi|257876026|ref|ZP_05655679.1| flagellin [Enterococcus casseliflavus EC20]
 gi|257810192|gb|EEV39012.1| flagellin [Enterococcus casseliflavus EC20]
          Length = 306

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 89/309 (28%), Gaps = 61/309 (19%)

Query: 53  LEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPI 112
           +   Q K +      S S          + L S+   +  +   +         + +   
Sbjct: 54  VSLNQNKTYTNTIKDSISWT----KAQDSALESVSTSMLRIRSLVQSSANATAGSEELGA 109

Query: 113 NAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEE 172
           N   +    E  V   N   +G+YLFSG N++                            
Sbjct: 110 NRSEIEQEIEGIVESLNTNFDGRYLFSGTNTT---------------------------- 141

Query: 173 NSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGI 232
                                        +   +++       N +  ++   I +   +
Sbjct: 142 -------------------------TAPFEIVKENDAIVGIKYNGTSEDLPREIANGVSV 176

Query: 233 DVSANV----NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
           D+ A+     N  G              L   L    ++ L  ++L+   Q  + ++  R
Sbjct: 177 DLLASGDRLMNETGTAADPQNLSTYFNDLLSALRSDDKDALGGELLTAHDQHATNVVNVR 236

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           A +G     +       + +   +   +S    V+    + +    +     +  + TK+
Sbjct: 237 AQIGTLYNRLEAAADRNETEKLNLTETLSNKQDVDIAEKYMEYQNQMTAYRSTLAMGTKI 296

Query: 349 QKLSILNYL 357
            ++SIL+YL
Sbjct: 297 MQMSILDYL 305


>gi|207091790|ref|ZP_03239577.1| flagellar hook-associated protein FlgL [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 828

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 36.2 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI---SEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++ +      I +  A  G    + +NI      L+ +   I 
Sbjct: 728 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGSHGKAFENIIRRNEVLKTQVQSIR 787

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 788 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 828


>gi|298736758|ref|YP_003729288.1| flagellar hook-associated protein 3 FlgL [Helicobacter pylori B8]
 gi|298355952|emb|CBI66824.1| flagellar hook-associated protein 3 FlgL [Helicobacter pylori B8]
          Length = 828

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 35.8 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 728 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIR 787

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 788 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 828


>gi|307636990|gb|ADN79440.1| Flagellar hook-associated protein [Helicobacter pylori 908]
          Length = 839

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 12  MRVTFGSKY---NQMNHYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 68

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 69  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 128

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 129 KEHMMNVANTSIGGEFLFGGSKVDRPPIDS 158



 Score = 36.2 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 739 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQIQSIR 798

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 799 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 839


>gi|240137461|ref|YP_002961932.1| hypothetical protein MexAM1_META1p0726 [Methylobacterium extorquens
           AM1]
 gi|240007429|gb|ACS38655.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 597

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 64/184 (34%), Gaps = 8/184 (4%)

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI--KDTEGIDVSANVN 239
               + ++ +++        +  S           ASD      +    +  +++ A  N
Sbjct: 413 GSPAAGLSPRRVAADGNGYAETASAKTVIWYKGDTASDPRATATVQAGTSRTVEIGAQAN 472

Query: 240 MRGIRDIMFVAVIGTE----FLSKNLTDGARNVLTKKMLSTVQQGLSG--IIEQRAVLGI 293
              IR ++              +  +       ++ +  + +  G S   + +     G+
Sbjct: 473 EEAIRRMLAGIAAMAAENFTTGTGTVDTARFEAVSSRAANLLTAGTSQQSLEQIGTDFGL 532

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +  ++   +         +   +     V      A+L +L  +++ SY +T+ L ++S+
Sbjct: 533 AASSMANAKSVANTTKATLQDSLDGVDTVSTEEVAAKLLSLQTQLQASYKVTSILSEMSL 592

Query: 354 LNYL 357
           +NYL
Sbjct: 593 VNYL 596



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 1/170 (0%)

Query: 13  ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV 72
           +R +     +      L +++ TG++++    LG   T+ L      +     L +    
Sbjct: 14  DRQSASLVSMKNQLDGLAQQLSTGRTAETYGGLGVARTTSLSAHAAISAQDGYLAAIGSA 73

Query: 73  TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
             R+  + A L+ ++ +       L  ++  +           +  ++  + V   N   
Sbjct: 74  ETRVKLTSASLTQLKALSDSTRSNLTGIVATRN-EKLPSATVQLAANNLSAAVDALNQQA 132

Query: 133 EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
            G Y+FSG  +   P+                 L+  + E  K+ L    
Sbjct: 133 AGVYVFSGRATETAPVVSDQAILDGIPAEGLDGLRALIAEQKKADLGPSG 182


>gi|296134283|ref|YP_003641530.1| flagellar hook-associated protein 3 [Thermincola sp. JR]
 gi|296032861|gb|ADG83629.1| flagellar hook-associated protein 3 [Thermincola potens JR]
          Length = 292

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 96/332 (28%), Gaps = 63/332 (18%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             K+ E++ TG+  +        V S L          + L++       L T+   L  
Sbjct: 23  MNKIQEQLSTGKKINRPSDDPVGVVSSLRLRAGLTETEKYLNNVDDARAWLDTTDTALGQ 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
              ++Q      +               A  +    +  +  AN T +G+Y+F G  +S 
Sbjct: 83  ASDLLQRARELTIYGANDALAQQSRDALAQEIHQIRDQMIQVANTTHDGRYIFGGFKTSN 142

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
           +P        +    + D     +    + S+      + + +NAQ +   +  +E    
Sbjct: 143 QPFT------AAGAYTGDNGSIAYEIGVNVSMQVNIPGDAAFINAQDVFQLLADIEADL- 195

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGA 265
                      A +      ++  E                                   
Sbjct: 196 ----------TAGNTASLSNVRVGE----------------------------------- 210

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
                   +  +    S +  +   L +++  ++E  + L          +SK+  +   
Sbjct: 211 ----LDTAIDNILSLRSEVGAKTNRLDLTKSRLDEANLNLS-------ELLSKNEDINTA 259

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               QL    N    +     ++ + +++++L
Sbjct: 260 EVITQLKMQENTYRTALAAGARIIQPTLIDFL 291


>gi|332673140|gb|AEE69957.1| flagellar hook-associated protein 3 [Helicobacter pylori 83]
          Length = 828

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLNQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147


>gi|217033413|ref|ZP_03438843.1| hypothetical protein HP9810_1g27 [Helicobacter pylori 98-10]
 gi|216944118|gb|EEC23546.1| hypothetical protein HP9810_1g27 [Helicobacter pylori 98-10]
          Length = 826

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQDSNINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDMHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147


>gi|325995582|gb|ADZ50987.1| Flagellar hook-associated protein [Helicobacter pylori 2018]
 gi|325997178|gb|ADZ49386.1| Flagellar hook-associated protein [Helicobacter pylori 2017]
          Length = 838

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 11  MRVTFGSKY---NQMNHYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 67

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 68  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 127

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 128 KEHMMNVANTSIGGEFLFGGSKVDRPPIDS 157



 Score = 35.8 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 738 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQIQSIR 797

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 798 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 838


>gi|83312927|ref|YP_423191.1| hypothetical protein amb3828 [Magnetospirillum magneticum AMB-1]
 gi|82947768|dbj|BAE52632.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 712

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 1/183 (0%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T            ++         ++ +G  +     + A   +++ ++ E+    
Sbjct: 2   TRIGTLGANNAFVNRILDIQTRIQTEQIQVTSGLKAQSYDGIAAGTNTVINFQNEQAIAQ 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT-DNNKFPINAGMLRDSYE 122
             + +N +   +L  +   ++S++K +      L    +    +             + +
Sbjct: 62  RFIDNNDVWNTKLEAATTAIASVKKTLTIFRDSLESFRQNNPKNEQNIKGIQNTAFQALQ 121

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           S          GQYLFSG   S+ P+       S  +  +D  +  F    +    A   
Sbjct: 122 SIQADLGTNVNGQYLFSGGRVSDVPIQLPAGSLSEFQSMYDGSINTFSTTRNADTQAVSL 181

Query: 183 LEV 185
             V
Sbjct: 182 TNV 184



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 57/163 (34%), Gaps = 16/163 (9%)

Query: 211 ANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTE--FLSKNLTDGARN- 267
           +++W       +++R+     +DV    +       +    +  +  F +    D  +  
Sbjct: 549 SSSWYKGDTLQLQHRVDIDRTVDVGIYASDPAFEKGIRALALIAQGQFGTAGGLDSHQER 608

Query: 268 -----VLTKKMLSTVQQGL--------SGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
                 L    L +   G           +    ++L  + K I+ +          +  
Sbjct: 609 IGQALYLVNDSLESPAAGTPPFGTEKAGDVKSVASLLDGTRKTISLKNEKHNQFIGFLSK 668

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++    V++     ++ +    +E SY +  +++ LS+LNYL
Sbjct: 669 RVADIAQVDKTEIATKMLSDQTALEGSYQVLAQVKNLSLLNYL 711


>gi|257871324|ref|ZP_05650977.1| flagellin [Enterococcus gallinarum EG2]
 gi|257805488|gb|EEV34310.1| flagellin [Enterococcus gallinarum EG2]
          Length = 306

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 88/309 (28%), Gaps = 61/309 (19%)

Query: 53  LEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPI 112
           +   Q K +      S S          + L S+   +  +   +         + +   
Sbjct: 54  VSLNQNKTYNNTIKDSISWT----KAQDSALESVSTSMLRIRSLVQSSANATAGSEELGA 109

Query: 113 NAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEE 172
           N   +    E  V   N   +G+YLFSG N++                            
Sbjct: 110 NRSEIEQEIEGIVESLNTNFDGRYLFSGTNTT---------------------------- 141

Query: 173 NSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGI 232
                                        +    ++       N S  ++   I +   +
Sbjct: 142 -------------------------TAPFEIVKKNDAIVGIKYNGSSEDLPREIANGVSV 176

Query: 233 DVSANV----NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
           D+ A+     N  G              L   L    ++ L  ++L+   Q  + ++  R
Sbjct: 177 DLLASGDRLMNETGTAADPQNLSTYFNDLLSALRSDDKDALGGELLTAHDQHATNVVNVR 236

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           A +G     +       + +   +   +S    V+    + +    +     +  + TK+
Sbjct: 237 AQIGTLYNRLEAAADRNETEKLNLTETLSNKQDVDIAEKYMEYQNQMTAYRSTLAMGTKI 296

Query: 349 QKLSILNYL 357
            ++SIL+YL
Sbjct: 297 MQMSILDYL 305


>gi|218528945|ref|YP_002419761.1| hypothetical protein Mchl_0915 [Methylobacterium chloromethanicum
           CM4]
 gi|218521248|gb|ACK81833.1| conserved hypothetical protein [Methylobacterium chloromethanicum
           CM4]
          Length = 597

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 67/184 (36%), Gaps = 8/184 (4%)

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI--KDTEGIDVSANVN 239
               + ++ +++        +  S           ASD      +    +  +++ A  N
Sbjct: 413 GSPAAGLSPRRVAADGNGYAETASAKTVIWYKGDTASDPRATATVQAGTSRTVEIGAQAN 472

Query: 240 MRGIRD-IMFVAVIGTE---FLSKNLTDGARNVLTKKMLSTVQQGLSG--IIEQRAVLGI 293
              IR  +  +A +  E     +  +       ++ +  S +  G S   + +     G+
Sbjct: 473 EEAIRRTLAGIAAMAAENFTTGTGTVDTARFEAVSSRAASLLTAGTSQQSLEQIGTDFGL 532

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +  ++   +         +   +     V      A+L +L  +++ SY +T+ L ++S+
Sbjct: 533 AASSMANAKSVANTTKATLQDSLDGVDTVSTEEVAAKLLSLQTQLQASYKVTSILSEMSL 592

Query: 354 LNYL 357
           +NYL
Sbjct: 593 VNYL 596



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 1/170 (0%)

Query: 13  ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV 72
           +R +     +      L +++ TG++++    LG   T+ L      +     L +    
Sbjct: 14  DRQSASLVSMKNQLDGLAQQLSTGRTAETYGGLGVARTTSLSAHAAISAQDGYLSAIGSA 73

Query: 73  TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
             R+  + A L+ ++ +       L  ++  +           +  ++  + V   N   
Sbjct: 74  ETRVKLTSASLTQLKALSDSTRSNLTGIVATRN-EKLPSATVQLAANNLSAAVDALNQQA 132

Query: 133 EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
            G Y+FSG  +   P+                 L+  + E  K+ L    
Sbjct: 133 AGVYVFSGRATETAPVVSDQAILDGIPAEGLDGLRTLIAEQKKADLGPLG 182


>gi|315586288|gb|ADU40669.1| flagellar hook-associated protein 3 [Helicobacter pylori 35A]
          Length = 828

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSGINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSMRGEFLFGGSKVDRPPIDS 147


>gi|308273551|emb|CBX30153.1| hypothetical protein N47_D29620 [uncultured Desulfobacterium sp.]
          Length = 288

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 65/144 (45%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++  ++++ +     +++++  K ++   +G+           +T  L+ +   + + + 
Sbjct: 3   VTNKTVYDSVRYNLGKISEEMSKANQIASSGKLISDLSDDPVGLTQSLKIKSVISGLDQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + SL    LS S++ L+ +Q ++ D     V +    T  ++    A  ++++ +  +
Sbjct: 63  GRNVSLGKSWLSASESALTGVQDLISDTKALCVQMASSTTGASQRASAAATVQNTLDEIL 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLN 149
           + AN    G+Y+FSG  +     +
Sbjct: 123 SLANTEVSGRYIFSGTKTDSAAFD 146


>gi|254559639|ref|YP_003066734.1| hypothetical protein METDI1098 [Methylobacterium extorquens DM4]
 gi|254266917|emb|CAX22716.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 597

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 67/184 (36%), Gaps = 8/184 (4%)

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI--KDTEGIDVSANVN 239
               + ++ +++        +  S           ASD      +    +  +++ A  N
Sbjct: 413 GSPAAGLSPRRVAADGNGYAETASAKTVIWYKGDTASDPRATATVQAGTSRTVEIGAQAN 472

Query: 240 MRGIRD-IMFVAVIGTE---FLSKNLTDGARNVLTKKMLSTVQQGLSG--IIEQRAVLGI 293
              IR  +  +A +  E     +  +       ++ +  + +  G S   + +     G+
Sbjct: 473 EEAIRRTLAGIAAMAAENFTTGTGTVDTARFEAVSSRAANLLTAGTSQQSLEQIGTDFGL 532

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +  ++   +         +   +     V      A+L +L  +++ SY +T+ L ++S+
Sbjct: 533 AASSMANAKSVANTTKATLQDSLDGVDTVSTEEVAAKLLSLQTQLQASYKVTSILSEMSL 592

Query: 354 LNYL 357
           +NYL
Sbjct: 593 VNYL 596



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 1/170 (0%)

Query: 13  ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV 72
           +R +     +      L +++ TG++++    LG   T+ L      +     L +    
Sbjct: 14  DRQSASLVSMKNQLDGLAQQLSTGRTAETYGGLGVARTTSLSAHAAISAQNGYLAAIGSA 73

Query: 73  TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
             R+  + A L+ ++ +       L  ++  +           +  ++  + V   N   
Sbjct: 74  ETRVKLTSASLTQLKALSDSTRSNLTGIVATRN-EKLPSATVQLAANNLSAAVDALNQQA 132

Query: 133 EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
            G Y+FSG  +   P+                 L+  + E  K+ L    
Sbjct: 133 AGVYVFSGRATETAPVVSDQAILDGIPAEGLDGLRTLIAEQKKADLGPSG 182


>gi|315497621|ref|YP_004086425.1| flagellin domain protein [Asticcacaulis excentricus CB 48]
 gi|315415633|gb|ADU12274.1| flagellin domain protein [Asticcacaulis excentricus CB 48]
          Length = 305

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 104/358 (29%), Gaps = 62/358 (17%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++        +      + + ++ T + +      G     I  ++     I   
Sbjct: 3   ISTGQMWGNALSNLMQAQIRKDEANNQLSTQKVATDFAGYGRGAEIIAAYQSSLERITAY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
                 V+ RL++    L        D +      +     +        +L+ SY +F 
Sbjct: 63  SQVAQSVSDRLASQNIALER----ASDGIATGKDGIMDAIASKSLDGLTTVLQSSYMAFA 118

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N   +G YLF G N SE PL      D     + D    G                 
Sbjct: 119 DGLNYKHQGAYLFGGGNESEAPLAAMSLNDLAGTPAADVFKNG----------------- 161

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG--- 242
                                                  +I  T  +      +  G   
Sbjct: 162 ---------------------------------SVKKASKIDATTTLQTGMLASDIGTEG 188

Query: 243 ---IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
               RD+   A I      +     A+    + + + +    + +++  A+ G  +  + 
Sbjct: 189 ATLFRDL--KAFIDANAPMQGAMTDAQQATLQGLATRMNAAYTKMVDHTALNGTFQNRVE 246

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                L+ + + ++  IS    +    A+ +L      ++ +  +   L+ +S+L+ L
Sbjct: 247 NTLKSLEGQESSLNNLISNKTDINMAEAYTKLEQADLTVQAASQVVANLKSVSLLDLL 304


>gi|254478850|ref|ZP_05092215.1| flagellar hook-associated protein 3 [Carboxydibrachium pacificum
           DSM 12653]
 gi|214035212|gb|EEB75921.1| flagellar hook-associated protein 3 [Carboxydibrachium pacificum
           DSM 12653]
          Length = 296

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 93/332 (28%), Gaps = 59/332 (17%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             K    + +G+           V + L  + +         +       L  + + L+ 
Sbjct: 23  LQKGQNMLSSGKKFTRPSDDPVAVATSLRIKTDMARNDAYTKNADDAKSWLEITDSALAQ 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           +  ++Q      V    G    +     A  +    +  V   N    G+Y+F+G  +  
Sbjct: 83  LGDLLQRTRELAVEGANGTLTQSDMEKIAQEIMQIKQQMVQVGNTQYNGRYIFAGFRTDS 142

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
            P +      +    S D     F      + +A                 +     +  
Sbjct: 143 APFSE-----TDNGYSGDDNFIEFEIGPGGNKMA-----------------VNVPGSRLF 180

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGA 265
           D                                    +R    +  +  +     L +G 
Sbjct: 181 D-----------------------------------VVRGTSRLLQMMDDL-KSALENGN 204

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
              ++  M++ +   L  ++  RA +G     I+  +  LQN N      +SK+   +  
Sbjct: 205 HQAVSG-MIANIDNQLENVLSVRAEVGAKSNRIDLIQNRLQNDNYNFTALLSKNEDADMA 263

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                L    N    S     ++ + S++++L
Sbjct: 264 QVITNLKMDENVYRASLAAGARIIQPSLIDFL 295


>gi|110805099|ref|YP_688619.1| flagellar hook-associated protein FlgL [Shigella flexneri 5 str.
           8401]
 gi|110614647|gb|ABF03314.1| flagellar hook-associated protein FlgL [Shigella flexneri 5 str.
           8401]
 gi|333005649|gb|EGK25167.1| flagellar hook-associated protein 3 [Shigella flexneri K-218]
 gi|333008288|gb|EGK27762.1| flagellar hook-associated protein 3 [Shigella flexneri K-272]
 gi|333019778|gb|EGK39050.1| flagellar hook-associated protein 3 [Shigella flexneri K-227]
          Length = 317

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 111/356 (31%), Gaps = 56/356 (15%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEANGDYVGGTESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D         +AS+ N+                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDG--------SASETNL------------------- 200

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL----SGIIEQRAVLGISEKN 297
                  +        +      A   +    L    +GL    + ++  RA LG     
Sbjct: 201 ----FAMLDSAIAALKTPVADSEADKEIAAAALDKTNRGLKNSLNNVLTVRAELGTQLNK 256

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +        ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 257 LESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|154687655|ref|YP_001422816.1| flagellar hook-associated protein FlgL [Bacillus amyloliquefaciens
           FZB42]
 gi|154353506|gb|ABS75585.1| FlgL [Bacillus amyloliquefaciens FZB42]
          Length = 305

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 99/341 (29%), Gaps = 68/341 (19%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             +L +++ TG+               +++  +   + +   + S     L  S++ ++S
Sbjct: 23  LDRLQQQVSTGKKITKASDDPVVAMKGMQYRTQLAQVNQYQRNVSQGFTWLENSESSVNS 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
              I+  +   +V          +       +    +  V+ AN    G+YLF+G NS  
Sbjct: 83  ETDIMGKIRDLMVQAKSDSNGETELKAIGTEIGQLKKQLVSVANTQVNGRYLFNGTNSDV 142

Query: 146 KPLN---------GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDF 196
            P+           Y      +  + +      L+ NS    A   +     N   + +F
Sbjct: 143 PPITENADGTYTYNYENYTGASDVNINISNGAVLKVNSDPNSAFGGVAQ---NGDNVFEF 199

Query: 197 IKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF 256
           +  LE   S         S A    +   I               G  D M         
Sbjct: 200 LNSLEASLSKGTL-----SEADSDQVLSDI--------------DGFTDKM--------- 231

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
                                         +++ +G     +   +  L+++    +  +
Sbjct: 232 ----------------------------NAEKSNIGARTNRLELIQTRLESQAATAEKVL 263

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           S +  VE         +       +  +   + + S++++L
Sbjct: 264 SDNEDVEMEDVIVDYLSQQTVHRAALSVNANIIQPSLIDFL 304


>gi|163850385|ref|YP_001638428.1| hypothetical protein Mext_0952 [Methylobacterium extorquens PA1]
 gi|163661990|gb|ABY29357.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
          Length = 597

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 67/184 (36%), Gaps = 8/184 (4%)

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI--KDTEGIDVSANVN 239
               + ++ +++        +  S           ASD      +    +  +++ A  N
Sbjct: 413 GSPAAGLSPRRVAADGNGYAETASAKTVIWYKGDTASDPRATATVQAGTSRTVEIGAQAN 472

Query: 240 MRGIRD-IMFVAVIGTE---FLSKNLTDGARNVLTKKMLSTVQQGLSG--IIEQRAVLGI 293
              IR  +  +A +  E     +  +       ++ +  + +  G S   + +     G+
Sbjct: 473 EEAIRRTLAGIAAMAAENFTTGTGTVDTARFEAVSSRAANLLTAGTSQQSLEQIGTDFGL 532

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +  ++   +         +   +     V      A+L +L  +++ SY +T+ L ++S+
Sbjct: 533 AASSMANAKSVANTTKATLQDSLDGVDTVSTEEVAAKLLSLQTQLQASYKVTSILSEMSL 592

Query: 354 LNYL 357
           +NYL
Sbjct: 593 VNYL 596



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 1/170 (0%)

Query: 13  ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV 72
           +R +     +      L +++ TG++++    LG   T+ L      +     L +    
Sbjct: 14  DRQSASLVSMKNQLDGLAQQLSTGRTAETYGGLGVARTTSLSAHAAISAQDGYLAAIGSA 73

Query: 73  TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
             R+  + A L+ ++ +       L  ++  +           +  ++  + V   N   
Sbjct: 74  ETRVKLTSASLTQLKALSDSTRSNLTGIVATRN-EKLPSATVQLAANNLSAAVDALNQQA 132

Query: 133 EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
            G Y+FSG  +   P+                 L+  + E  K+ L    
Sbjct: 133 AGVYVFSGRATETAPVVSDQAILDGIPAEGLDGLRTLIAEQKKADLGPSG 182


>gi|317010575|gb|ADU84322.1| flagellar hook-associated protein FlgL [Helicobacter pylori
           SouthAfrica7]
          Length = 827

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNHYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLNQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRNAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMINIANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 37.0 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 727 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGTHGKAFENIIRRNEVLKTQVQSIR 786

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 787 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 827


>gi|194365673|ref|YP_002028283.1| flagellar hook-associated protein FlgL [Stenotrophomonas
           maltophilia R551-3]
 gi|194348477|gb|ACF51600.1| flagellar hook-associated protein 3 [Stenotrophomonas maltophilia
           R551-3]
          Length = 400

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/398 (14%), Positives = 122/398 (30%), Gaps = 45/398 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            ++ ISTS +F +   L          L +++ TG              + +  ++    
Sbjct: 1   MSSRISTSMMFNQSVSLMMAKQAKLSHLEQQIATGSKIVSAKDDPVGAGAAVGLDRSLAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           +     +   V  RL   +  L+ +  ++  +    +                  L    
Sbjct: 61  LDRMKLNAGNVQNRLGVQENTLAQVNDLMGRVNDLTIQASNPALSAADKKTLITELNQIR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPLN---------------------GYFTKDSLAK 159
           +  ++ AN  D  G+Y+F G N  + P                         + +DSL  
Sbjct: 121 DGLLSLANADDGTGRYVFGGTNDGDPPFAKINGKVVYRGDQTQRQVEVGPDTYVRDSLPG 180

Query: 160 KSFDQML---QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSN 216
                 +    GF++  + +   G  + ++++       +  Q                 
Sbjct: 181 SEIFMRIPTGDGFVDGGAAAGNTGNGV-LTNITRDGSDSWNGQSFSVRFTAANQYEVLDG 239

Query: 217 ASDHNIKYRIKDTEGIDV---------------SANVNMRGIRDIMFVAVIGTEFLSKNL 261
           A +       K  + ++V               S NV     RDI          L  + 
Sbjct: 240 AGNVTGTGTYKAGDNLEVNGVRLQITGAPVAGDSFNVKPATSRDIFDTMDKLIAALDADT 299

Query: 262 TD----GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
                  A+    +  L  V +    +I+ RA  G   K ++      +     + T +S
Sbjct: 300 GTTAKMSAQQNELQNALRDVARASERMIDSRAAGGAQLKALDNAADMREANGVTLKTTLS 359

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           +   ++   A +Q       ++ +  I +++Q +S+ N
Sbjct: 360 QMRDLDYADALSQYQLQSTALQAAQTIFSQMQSMSLFN 397


>gi|257866413|ref|ZP_05646066.1| flagellin [Enterococcus casseliflavus EC30]
 gi|257873071|ref|ZP_05652724.1| flagellin [Enterococcus casseliflavus EC10]
 gi|325567495|ref|ZP_08144162.1| flagellin family protein [Enterococcus casseliflavus ATCC 12755]
 gi|257800371|gb|EEV29399.1| flagellin [Enterococcus casseliflavus EC30]
 gi|257807235|gb|EEV36057.1| flagellin [Enterococcus casseliflavus EC10]
 gi|325158928|gb|EGC71074.1| flagellin family protein [Enterococcus casseliflavus ATCC 12755]
          Length = 306

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 89/309 (28%), Gaps = 61/309 (19%)

Query: 53  LEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPI 112
           +   Q K +      S S          + L S+   +  +   +         + +   
Sbjct: 54  VSLNQNKTYNNTIKDSISWT----KAQDSALESVSTSMLRIRSLVQSSANATAGSEELGA 109

Query: 113 NAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEE 172
           N   +    E  V   N   +G+YLFSG N++                            
Sbjct: 110 NRSEIEQEIEGIVESLNTNFDGRYLFSGTNTT---------------------------- 141

Query: 173 NSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGI 232
                                        +   +++       N +  ++   I +   +
Sbjct: 142 -------------------------TAPFEIVKENDAIVGIKYNGTSEDLPREIANGVSV 176

Query: 233 DVSANV----NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
           D+ A+     N  G              L   L    ++ L  ++L+   Q  + ++  R
Sbjct: 177 DLLASGDRLMNETGTAADPQNLSTYFNDLLSALRSDDKDALGGELLTAHDQHATNVVNVR 236

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           A +G     +       + +   +   +S    V+    + +    +     +  + TK+
Sbjct: 237 AQIGTLYNRLEAAADRNETEKLNLTETLSNKQDVDIAEKYMEYQNQMTAYRSTLAMGTKI 296

Query: 349 QKLSILNYL 357
            ++SIL+YL
Sbjct: 297 MQMSILDYL 305


>gi|308061647|gb|ADO03535.1| flagellar hook-associated protein FlgL [Helicobacter pylori Cuz20]
          Length = 826

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDVHSETSRVAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 36.2 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 726 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIR 785

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 786 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 826


>gi|326389603|ref|ZP_08211169.1| flagellar hook-associated protein 3 [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994318|gb|EGD52744.1| flagellar hook-associated protein 3 [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 297

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 99/332 (29%), Gaps = 58/332 (17%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             K    + TG+           V + L    +         +       L  +   LS 
Sbjct: 23  LQKNQNMLSTGKRISRPSDDPVAVATSLRIRTDMTRNDAYTKNADDAKSWLDITDTALSQ 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           +  ++Q      V    G          A  +       +   N    G+Y+F+G  ++ 
Sbjct: 83  LNDLLQRTRELAVEGSNGTLTQTDMQKIANEIEQLKAQMIQVGNTQYNGRYIFAGFKTTT 142

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
           +P +      +    S D  +  F       + AG +    ++   ++            
Sbjct: 143 QPFSE-----TKNSYSGDNGVIEF------EVGAGGNKIAVNVTGDKV------------ 179

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGA 265
                                          NV+  GI  +    +   + L   L  G 
Sbjct: 180 ------------------------------FNVDSTGISQL----LTVMDKLKNALDSGD 205

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
              ++  +++ V + L  ++  RA +G     ++  +  LQ+ N      +SK+  V+  
Sbjct: 206 HQAVSN-LIADVDKQLENVLAVRADVGAKSNRLDLIQNRLQDDNYNFTALLSKNEDVDLA 264

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                L    N    S     ++ + S++++L
Sbjct: 265 QVITNLQMDENVYRASLAAGARIIQPSLIDFL 296


>gi|300693345|ref|YP_003749318.1| flagellar hook-filament junction protein protein 3 [Ralstonia
           solanacearum PSI07]
 gi|299075382|emb|CBJ34677.1| flagellar hook-filament junction protein protein 3 [Ralstonia
           solanacearum PSI07]
          Length = 316

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 114/353 (32%), Gaps = 42/353 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+  F    +  +    + VKL +++ TG + +      A +  +L+ +Q ++   + 
Sbjct: 3   VSTAQFFAASTVSMQNTQSNLVKLQQQISTGIALNSAGDNPAAMGQVLQLQQSQDSNDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      RL+   + LS +   +Q      +        +++       ++  Y+  +
Sbjct: 63  QVNRDATDARLTNVSSALSDVITTLQQGKQSTIAANTTLLTDSQRVGILAQVKQQYQQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  G  LF G N +  P                  +Q     +  + ++G  + 
Sbjct: 123 STANRRDASGVALFGGANGTTDPFTSTAGSVQYVGSGQPPTVQVAQNISMPNSVSGDSVF 182

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V   N                         S+AS+                 N N    +
Sbjct: 183 VRVPN-------------------------SDASNP----------------NANQSVFK 201

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
               +    ++ ++ +          +     +       ++ +  +G  +  I      
Sbjct: 202 TYENLITALSKPITTSADVTTIQTAVQTAQGNLDSAYQVALQAQVTVGTQQAQITTLNSS 261

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             N    +   ISK   V+  +A +Q S     ++ +    T +Q LS+  Y+
Sbjct: 262 GSNFGEQLKEQISKLQSVDYTSAISQFSQQQVSLQAAQKTFTSMQGLSLFQYI 314


>gi|52082075|ref|YP_080866.1| flagellar hook-associated protein FlgL [Bacillus licheniformis ATCC
           14580]
 gi|52787464|ref|YP_093293.1| flagellar hook-associated protein FlgL [Bacillus licheniformis ATCC
           14580]
 gi|319647942|ref|ZP_08002160.1| FlgL protein [Bacillus sp. BT1B_CT2]
 gi|52005286|gb|AAU25228.1| flagellar hook-associated protein 3 [Bacillus licheniformis ATCC
           14580]
 gi|52349966|gb|AAU42600.1| FlgL [Bacillus licheniformis ATCC 14580]
 gi|317390283|gb|EFV71092.1| FlgL protein [Bacillus sp. BT1B_CT2]
          Length = 303

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 98/332 (29%), Gaps = 52/332 (15%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             KL  ++ +G+               L++  + + + +   + S     L  ++ +++ 
Sbjct: 23  LDKLQSQISSGKKITKASDDPVVAMKSLKYNTQLSQVKQYQSNASQAFTWLENTETNITE 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
              I+  +    V         ++       +    +  +  AN    G+YLF+G NS  
Sbjct: 83  GIDIMAKIRELTVKAQNSTNGKDELNAIGVEIGQLKDQLIQIANTQVNGRYLFNGTNSDV 142

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
            P+          K +       F    S S +       +++N              F 
Sbjct: 143 APIT---------KNADGTYTYNFENYTSSSDVLINVSPNATLNVN------SNPISAFG 187

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGA 265
                       S  N+   I+  E                              L  G 
Sbjct: 188 GQSS--------SGQNVFEMIESLENA----------------------------LKAGT 211

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
              + +  LS + Q  + +  +R+ +G     +      L  +       +S +  VE  
Sbjct: 212 MEGM-ENALSDIDQFSNQMSNERSDIGARYNRLELINARLSEQEETATKVLSDNEDVELE 270

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  T  +    +  +  K+ + +++++L
Sbjct: 271 EIITEFITQQSVHRAALAVNAKIVQPTLVDFL 302


>gi|261839151|gb|ACX98916.1| flagellar hook-associated protein FlgL [Helicobacter pylori 52]
          Length = 828

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDTNTQIASGLKIRYGYQNSNINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 36.6 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 728 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGTHGKAFENIIRRNEVLKTQVQSIR 787

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 788 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 828


>gi|188996941|ref|YP_001931192.1| flagellar hook-associated protein 3 [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932008|gb|ACD66638.1| flagellar hook-associated protein 3 [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 313

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 108/335 (32%), Gaps = 44/335 (13%)

Query: 23  NKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH 82
             +  K  +++ TG+             + L  +    +I   L +   V+  L  +++ 
Sbjct: 20  QNEIEKYSKQIATGKKLLSPSDDTVATVASLRLKTINQNIDTYLRNMDFVSNVLDQAEST 79

Query: 83  LSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141
           LS++ K  Q++   ++ +L  G  D     +      +  +  +  AN +     +F G+
Sbjct: 80  LSNISKAGQELRVEIIRLLNTGVLDKEDAKVLRDYFVNMKDYIIKQANYSIGDTRIFGGV 139

Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201
            S   P             + D   QG   E    +  G  L            F  ++ 
Sbjct: 140 KSQTDPF------------APDGTYQGETTETKVPVAPGVELNT---------TFNGKVY 178

Query: 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
              ++D                 ++   E ID   ++    I                N 
Sbjct: 179 LGVNNDSN---------------KMIMAEAIDKIVSIIDNAI-------AGTGSLGDLNT 216

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
              + N    K+L     GL+ +++  +++G   K IN+ +   +      +  IS    
Sbjct: 217 ATISVNGQNLKILEAFDVGLNNVLQYTSIIGTQVKIINDLKSGFEKNKVFNNNLISNLQD 276

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
           V+   A   L       +       + ++LS+L +
Sbjct: 277 VDTAEAITNLQKAQTAYQALIATYNQNRQLSLLEF 311


>gi|298507070|gb|ADI85793.1| flagellar hook-filament junction protein FlgL [Geobacter
           sulfurreducens KN400]
          Length = 298

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/283 (10%), Positives = 76/283 (26%), Gaps = 59/283 (20%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQ 135
           LS ++A +  M  ++       V +    +D          +       +   N    G+
Sbjct: 73  LSMTEAAMDEMGNVLTRAKELTVQMANATSDAKARESGMNEIVQLRNQLIQLGNTQLNGR 132

Query: 136 YLFSGINSSEKPLNGYFT-KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           Y+F G  +   P +       +    + +     F+  N       +           + 
Sbjct: 133 YVFGGFKNDTPPFDSTGAFNGTDDSITIEIDRGAFVPINYSGGELLRGGAPPGSTGTDI- 191

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGT 254
                                          I   + +  +   N +             
Sbjct: 192 -------------------------------IGVFDNLITALGANDQ------------- 207

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
                           +  L  ++  LS ++  R  LG     +  ++  ++     +  
Sbjct: 208 -------------TAVQAELPNLEDALSQVLSTRTDLGARMNRLEGQKNVIEEMKFSLTK 254

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +S    V+     + L+      E +   + K+ ++S+L+YL
Sbjct: 255 VLSDKQDVDFMQVISDLTKQQTAFEAAIAASGKISQISLLDYL 297


>gi|300902474|ref|ZP_07120456.1| flagellar hook-associated protein 3 [Escherichia coli MS 84-1]
 gi|301304978|ref|ZP_07211080.1| flagellar hook-associated protein 3 [Escherichia coli MS 124-1]
 gi|300405506|gb|EFJ89044.1| flagellar hook-associated protein 3 [Escherichia coli MS 84-1]
 gi|300839696|gb|EFK67456.1| flagellar hook-associated protein 3 [Escherichia coli MS 124-1]
 gi|315253884|gb|EFU33852.1| flagellar hook-associated protein 3 [Escherichia coli MS 85-1]
          Length = 317

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 111/356 (31%), Gaps = 56/356 (15%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGFRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEANGDYVGGTESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D         +AS+ N+                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDG--------SASETNL------------------- 200

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG----LSGIIEQRAVLGISEKN 297
                  +        +      A   +    L    +G    L+ ++  RA LG     
Sbjct: 201 ----FAMLDSAIAALKTPVADSEADKEIAAAALDKTNRGLKNSLNNVLTVRAELGTQLNE 256

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +        ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 257 LESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|188527101|ref|YP_001909788.1| flagellar hook-associated protein FlgL [Helicobacter pylori Shi470]
 gi|188143341|gb|ACD47758.1| flagellar hook-associated protein FlgL [Helicobacter pylori Shi470]
          Length = 828

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDVHSETSRVAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            E  +  AN +  G++LF G      P++ 
Sbjct: 118 REHMMNVANTSIGGEFLFGGSKVDRPPIDS 147



 Score = 35.8 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 728 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIR 787

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 788 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 828


>gi|193069521|ref|ZP_03050475.1| flagellar hook-associated protein 3 [Escherichia coli E110019]
 gi|192957269|gb|EDV87718.1| flagellar hook-associated protein 3 [Escherichia coli E110019]
          Length = 317

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 111/356 (31%), Gaps = 56/356 (15%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEANGDYVGGTESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D         +AS+ N+                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDG--------SASETNL------------------- 200

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG----LSGIIEQRAVLGISEKN 297
                  +        +      A   +    L    +G    L+ ++  RA LG     
Sbjct: 201 ----FAMLDSAIAALKTPVADSEADKEIAAAALDKTNRGLKNSLNNVLTVRAELGTQLNE 256

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +        ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 257 LESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|300716225|ref|YP_003741028.1| Hook-filament junction protein [Erwinia billingiae Eb661]
 gi|299062061|emb|CAX59177.1| Hook-filament junction protein [Erwinia billingiae Eb661]
          Length = 319

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 115/351 (32%), Gaps = 36/351 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ I+++            +K+ E++ +G+               +   Q +   ++ 
Sbjct: 3   LSTAQIYDQQMRGISSSQASWLKVGEQLSSGKRVVNPSDDPVAAAQAVVLSQAQAQTSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    T  +S  + +L  +  +VQ     +V    G   ++     A  L    +  +
Sbjct: 63  STARGFATNNISQEETNLQQVTSVVQQAQTIVVAAANGTLSDDDRASYAQQLTGIRDQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  + + P         +     D  +   ++ N           
Sbjct: 123 NLANTTDGNGRYMFAGYQTDKAPFTQ-DANGDVTYVGGDTPISQKVDSNRTM-------- 173

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V++    Q+   +        D     +N     +  IK      E  D + +       
Sbjct: 174 VTNHTGSQVFTSLTSNPTAEPDGSASESNIFTTLNTAIKALNTPLESADQATS------- 226

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                               A +    K    ++  L+ ++  R+VLG     ++     
Sbjct: 227 -------------------DAASAALDKTNRGLKNSLNNVLAVRSVLGTQLTELDNLDSK 267

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
             +      T +S  + V+  +A +  +     ++ SY + T +  +S+  
Sbjct: 268 GDDTKVNQATQMSNLVDVDYTSAISSYTMQQTALQASYKVFTDMSSMSLFK 318


>gi|224825784|ref|ZP_03698888.1| flagellar hook-associated protein 3 [Lutiella nitroferrum 2002]
 gi|224602008|gb|EEG08187.1| flagellar hook-associated protein 3 [Lutiella nitroferrum 2002]
          Length = 303

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 122/351 (34%), Gaps = 53/351 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++++     M+   +  N     L ++M +G               +L  ++E+  + + 
Sbjct: 3   VASNQFQASMSAAMQSANSRLADLQQQMSSGDRLLVPSDDPVASVRLLRLQREEAALTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + +  RLS ++++L  M K +      LV   +G    +     +  L +  +S  
Sbjct: 63  RDNIAALRSRLSMNESYLDGMSKDMMQARDLLVWAADGGNTADDLRAMSSSLANLRDSLF 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D EG+YLFSG  S+ + +    T+ + ++ SF         +  + ++     +
Sbjct: 123 YAANTKDQEGRYLFSGTASATQTIAVDNTQPAGSRYSFSG-----NTDRQQVVIGHGVTQ 177

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +++  + M  F+ QL+                            + ID   +  +    
Sbjct: 178 PANVTLEDMAAFLNQLD----------------------------QTIDTLQSPTLDP-- 207

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                        + ++    R  L           L  I  + A LG ++  +      
Sbjct: 208 ------------GNPSVGQTVRQTL-----DGTDTALKAIGVKIAQLGGAQNTLQMMDDN 250

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
             N +      I+    ++   A   +++ +  ++ S     K+  LS+ +
Sbjct: 251 HSNVSLANQQSIANLGNLDYAEASINMNSYLLAVQASQKAYGKISALSLFD 301


>gi|83747647|ref|ZP_00944683.1| FlgL [Ralstonia solanacearum UW551]
 gi|207728353|ref|YP_002256747.1| flagellar hook-associated protein 3 [Ralstonia solanacearum MolK2]
 gi|207739730|ref|YP_002258123.1| flagellar hook-associated protein 3 [Ralstonia solanacearum
           IPO1609]
 gi|83725699|gb|EAP72841.1| FlgL [Ralstonia solanacearum UW551]
 gi|206591599|emb|CAQ57211.1| flagellar hook-associated protein 3 [Ralstonia solanacearum MolK2]
 gi|206593112|emb|CAQ60018.1| flagellar hook-associated protein 3 [Ralstonia solanacearum
           IPO1609]
          Length = 316

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 117/353 (33%), Gaps = 42/353 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+  F       +    + VKL +++ TG + +      A +  +L+ +Q ++   + 
Sbjct: 3   VSTAQFFAASTASMQSTQSNLVKLQQQLSTGIALNSAGDNPAAMGQVLQLQQSQDTSDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      RL++  + LS +   +Q      +        +++       ++  Y+  +
Sbjct: 63  QVNRDATNARLTSVSSALSDVISTLQQGKQSTIAANTSLLTDSQRVGILAQVKQQYQQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  G  LF G N +  P          A       +Q   + +  + ++G  + 
Sbjct: 123 SSANQRDASGVALFGGANGTTDPFVSSAGSVQYAGSGQPPTVQVAQDISMPNSVSGDSVF 182

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V                                       R+ +T+  + S   N    +
Sbjct: 183 V---------------------------------------RVPNTDASNPS--ANQSVFK 201

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
               +    ++ ++ +          K   + +       ++ +  +G  +  I      
Sbjct: 202 TYENLITALSKPITTSADVTTMQAAVKTAQNNLDNAYQVALQAQVTVGTQQSQITTLNSS 261

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             N    +   ISK   V+  +A +Q S     ++ +    T +Q LS+  Y+
Sbjct: 262 GSNFGEQLKEQISKLQSVDYTSAISQFSQQQVSLQAAQKTFTSMQGLSLFQYI 314


>gi|171059405|ref|YP_001791754.1| flagellar hook-associated protein 3 [Leptothrix cholodnii SP-6]
 gi|170776850|gb|ACB34989.1| flagellar hook-associated protein 3 [Leptothrix cholodnii SP-6]
          Length = 405

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/403 (13%), Positives = 111/403 (27%), Gaps = 53/403 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+S +E      +   ++      ++ +G+    G        +              
Sbjct: 3   VSTASTYESSINTLQRRQQELSLAQGQLTSGKK--IGKPSDDPTGAARAERALIEQTRGE 60

Query: 66  LHSNSLVTKR--LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
                +   R  ++ S+  L     +VQ     L+    G     +    A  L +    
Sbjct: 61  TTLRVIDASRNAMTLSEGALGDAVDLVQTAREALMAAGNGSYTAGERKAVALQLSELRNQ 120

Query: 124 FVTFANMTD-EGQYLFSGINSSEKPL------NGYFTKDSLAKKSFDQMLQGFLEENSKS 176
            +  AN  D  G YLF G      P         Y +       + D+ L   ++     
Sbjct: 121 LLNVANQQDGNGGYLFGGQGVQTAPFLDAVGGVDYASTGGQINGATDERLPLSVDGQQIW 180

Query: 177 LLAGQHLEVSSMNAQQMTDFI------KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
           L A     V +  A             +  +      + +  ++S  +   ++Y I D++
Sbjct: 181 LQARSGNGVFTTAADAANSGSGWVNAGQVTDPAAYTGKSYEVSFSAGAGGALEYSITDSD 240

Query: 231 ------------------------GIDVSANVNMRGIRDIMFVAV------------IGT 254
                                    I  + +                             
Sbjct: 241 GASIASNQPYSAGKAITDVPGVAFTISGTPSATGTPPDRFTVAPSQPELSVFDALDRALA 300

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
                N   G         L  + Q LS     RA++G +   ++        +     T
Sbjct: 301 VLNDPNANPGQVMQGVNAGLRDMDQALSSFSSARAMVGETLNRLDGVGDRTDARILSSKT 360

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             S +  ++   A +  S      + +     ++QKLS+ NY+
Sbjct: 361 TRSNAEDLDMVEAISDFSNKQTSYQAALQSYAQVQKLSLFNYI 403


>gi|39998133|ref|NP_954084.1| flagellar hook-associated protein FlgL [Geobacter sulfurreducens
           PCA]
 gi|39985079|gb|AAR36434.1| flagellar hook-associated protein FlgL [Geobacter sulfurreducens
           PCA]
          Length = 298

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/359 (11%), Positives = 100/359 (27%), Gaps = 64/359 (17%)

Query: 1   MKTTGISTSSI-FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEK 59
           M+ T  +T+++    +  + +   +    L ++  TG   +           IL  +   
Sbjct: 1   MRVTQNTTANLVLNSLQTIRRRTEE----LEQQAATGVKINAPGDDPVTAQQILHMKSLM 56

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
               +   + S     LS ++A +  M  ++       V +    +D          +  
Sbjct: 57  AAGDQYSRNISNGISWLSMTEAAMDEMGNVLTRAKELTVQMANATSDAKARESGMNEIVQ 116

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFT-KDSLAKKSFDQMLQGFLEENSKSLL 178
                +   N    G+Y+F G  +   P +       +    + +     F+  N     
Sbjct: 117 LRNQLIQLGNTQLNGRYVFGGFKNDTPPFDSTGAFNGTDDSITIEIDRGAFVPINYSGGE 176

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
             +           +                                I   + +  +   
Sbjct: 177 LLRGGTPPGSTGTDI--------------------------------IGVFDNLITALGA 204

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           N +                             +  L  ++  LS ++  R  LG     +
Sbjct: 205 NDQ--------------------------TAVQAELPNLEDALSQVLSTRTDLGARMNRL 238

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++  ++     +   +S    V+     + L+      E +   + K+ ++S+L+YL
Sbjct: 239 EGQKNVIEEMKFSLTKVLSDKQDVDFMQVISDLTKQQTAFEAAIAASGKISQISLLDYL 297


>gi|237755866|ref|ZP_04584462.1| flagellar hook-associated protein 3 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691977|gb|EEP60989.1| flagellar hook-associated protein 3 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 313

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 108/338 (31%), Gaps = 50/338 (14%)

Query: 23  NKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH 82
             +  K  +++ TG+             + L  +    +I   L +   V   L  +++ 
Sbjct: 20  QNEIEKYSKQIATGKKLLSPSDDTVATVASLRLKTINQNIDTYLRNMDFVLNVLDQAEST 79

Query: 83  LSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141
           LS++ K  Q++   +V +L  G  D     +         +  +  AN +     +F G+
Sbjct: 80  LSNISKAGQELRVEIVRLLNTGVLDKEDAKVLRDYFVSMKDYIIKQANYSIGDTRIFGGV 139

Query: 142 NSSEKPLNG---YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
            S   P +    Y  + +  K      ++     +    L     +   +    M   I 
Sbjct: 140 KSQTDPFDSNGFYQGETTETKVPVAPGVEINTTFDGSKYLGVDTNDKQMI----MIKAID 195

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
           ++ D                D  I       E    +  VN + ++ +            
Sbjct: 196 KIVDII--------------DRAIAGTGSLGELNTATIPVNGQNLKIL------------ 229

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
                 A +V           GL+ +++  +++G   K IN+ +   +      D  IS 
Sbjct: 230 -----EAFDV-----------GLNNVLQYTSIIGTKVKIINDLKSGFEKNKVFNDNLISN 273

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
              V+   A   L       +       + ++LS+L++
Sbjct: 274 LQDVDAAQAITNLQKAQTAYQALIATYNQNRQLSLLDF 311


>gi|329849967|ref|ZP_08264813.1| flagellin [Asticcacaulis biprosthecum C19]
 gi|328841878|gb|EGF91448.1| flagellin [Asticcacaulis biprosthecum C19]
          Length = 306

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 109/342 (31%), Gaps = 61/342 (17%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST++ +        +  +   K ++++ T + +   +  G     I  ++   + I   
Sbjct: 3   VSTAATWSNALNNLMKSQERQNKANDQVSTQKVATDLMGYGRSSEIIAAYQASASRINSY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           +  N  V +RL++    L++      +    ++  L   +  +      G    + +   
Sbjct: 63  VAVNKSVAERLNSQDLALTTTSDAAANGKESIMNALASNSGASLMETMQGAFSIALQG-- 120

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              NM   GQY+F G N ++ P+      +  A                           
Sbjct: 121 --LNMEHHGQYMFGGGNDNKDPVTVATLSELAA--------------------------- 151

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                         ++D F++            +     RI  +  +      +  G RD
Sbjct: 152 ------------TNIDDVFANG-----------NVKKSSRIDASTTLQTGFLASDLG-RD 187

Query: 246 IMFVAVIGTEFLSKNLT------DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
           +M +     EF +            A+     +  +        ++EQ ++ G  +K + 
Sbjct: 188 MMQLFKDIQEFNNGPDGPFGTQLTDAQKTFLTEKSTQFSAVYDELVEQTSLNGTLQKRVE 247

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
             +  L+ + + ++  I      +   A++ L      ++ S
Sbjct: 248 TSQAALEGQASSLNELIGSRTEADMAKAYSNLQQAQVSVQAS 289


>gi|219670202|ref|YP_002460637.1| flagellar hook-associated protein 3 [Desulfitobacterium hafniense
           DCB-2]
 gi|219540462|gb|ACL22201.1| flagellar hook-associated protein 3 [Desulfitobacterium hafniense
           DCB-2]
          Length = 327

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 115/353 (32%), Gaps = 30/353 (8%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS + +   + +          KL  +M TGQ  +          + L ++   +++ + 
Sbjct: 3   ISNNMLSRNLLLNLWAAQGRMDKLQNQMSTGQKINRPSDDPVGTENSLRFKSNISYLNQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY-ESF 124
             +       + T+   +  M  ++Q      V  +   T N++      +  D   E  
Sbjct: 63  KANAKEGIAYMDTTDDVMGEMSLMIQRAKELAVHAMNTSTVNDEDRKKIAIEIDQIREHV 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           +  AN     +Y+F G  ++ +P    F K +   +  D   +  +  +    ++    +
Sbjct: 123 IELANTKVGTKYIFGGT-ANVEP----FPKGATGWQGSDDTKKFQVGGDLSIEVSVNGHD 177

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           +          +    +   +D   +    + AS   +   +         +N+N     
Sbjct: 178 LFG------AGWEYTPKTPATDPPTYEYQETGASGIAMFDTLAQLSKALNESNIN----- 226

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                             +    VL  K    ++     I + RA LG  +  ++     
Sbjct: 227 ---------GVDDGTGTEEDGVEVLLSK----LELQADHISDVRAQLGARQNRMDSVYTQ 273

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           L + +  +   ++  +  +         T  +  + +  + TK+ + S+ ++L
Sbjct: 274 LDSTSANLGDSLANVLYADIAETLVNFKTQDSIYQAALSVGTKIIQPSLADFL 326


>gi|333004894|gb|EGK24414.1| flagellar hook-associated protein 3 [Shigella flexneri VA-6]
          Length = 317

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 110/356 (30%), Gaps = 56/356 (15%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEANGDYVGGTESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D         +AS+ N+                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDG--------SASETNL------------------- 200

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG----LSGIIEQRAVLGISEKN 297
                  +        +      A   +    L    +G    L+ ++  R  LG     
Sbjct: 201 ----FAMLDSAIAALKTPVADSEADKEIAAAALDKTNRGLKNSLNNVLTVRTELGTQLNK 256

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +        ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 257 LESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|254470400|ref|ZP_05083804.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
 gi|211960711|gb|EEA95907.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
          Length = 507

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 15/163 (9%)

Query: 210 WANNWSNASDHNIKY--RIKDTEGIDVSANVNMRGIRDIM--FVAVIGTEFLSKNLTDGA 265
           W     N  D       +I D   ++  A  N +   + +      +  +F +  L D A
Sbjct: 344 WYTGTENGDDPRADKVVQIDDNVRVEYGARANEKAFSEQLQNLAVFVAADFTAVTLDDEA 403

Query: 266 RNVLT-----------KKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
              +               LS      SGI    + + +    +       +        
Sbjct: 404 SEAVAKSYYSSLAKKSDDALSVAGDRNSGIQSVASEMSVVNTTVKRTAERQKQAALTYQN 463

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++    V++     +++ L   +E S+  T+ L  L I N+L
Sbjct: 464 TLTSLENVDKTEVGTEIAVLRTDLEASFQATSILLNLGITNFL 506



 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 74/219 (33%), Gaps = 8/219 (3%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
           L  +          ++ +G  S     + +     LE  +E ++I     SN++ + +L 
Sbjct: 4   LLMQQKTQLEDKSIQLTSGLKSQTYGGISSDSRMALELRREISNIGIYEDSNAIASIQLD 63

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
                L  M+K+  + V  +       T + +   +           ++  N    G YL
Sbjct: 64  LMGKSLEHMEKMRAESVSAIDDNNYTLTTDGQ-TTSQQATEIMLHETISQLNSEVNGYYL 122

Query: 138 FSGINSSEKPLN--GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ-HLEVSSMNAQQMT 194
           F G +++E P+            K    ++++ +   +  +   G+    V+S       
Sbjct: 123 FGGKDATEPPVASLDAIMDGQGGKLGLKELMKRYENAHIGASENGRIESSVTSPAGVPTL 182

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
              +   + F     +  N   AS  ++   +   +  D
Sbjct: 183 TLQQDNVEGF----GFQINSVTASSTDVTTAVVPEDVSD 217


>gi|85859204|ref|YP_461406.1| flagellin and related hook-associated proteins [Syntrophus
           aciditrophicus SB]
 gi|85722295|gb|ABC77238.1| flagellin and related hook-associated proteins [Syntrophus
           aciditrophicus SB]
          Length = 403

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 109/355 (30%), Gaps = 50/355 (14%)

Query: 50  TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNK 109
           T I ++ + K+ I +   +       LS+S++ LS+   ++       V           
Sbjct: 51  TRIFDFRKTKSFIEQYNRNIDSADAWLSSSESKLSAAGDLISKAREIAVREASSTATETS 110

Query: 110 FPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKD--SLAKKSFDQMLQ 167
             ++A  ++   +  ++ AN T  G+YLFSG  +   P +          A  +     Q
Sbjct: 111 RKLSAENIQSLIDEMLSLANSTLNGRYLFSGSATDTPPFSASELPARIEAAGGAEGNEFQ 170

Query: 168 GFLEENSKSLLAGQHLEV----------------------------SSMNAQQMTDFIKQ 199
           G +E                                            ++A  +   +  
Sbjct: 171 GTVESQGHFTGTSNKTFAVRIDEGGPLAEVEYSISLDGGKSWCAGKDDLSAGTVE--LGD 228

Query: 200 LEDKFSDDEYWANNWSNASDHNIKY-----------RIKDTEGIDVSANVNMRGIRDIMF 248
                 DD+  A   SN     +K            ++      D     N+ G      
Sbjct: 229 GVQMAFDDDGGAKPLSNGDLFYVKSYAAGYYCGNNEKLSVDVQRDSPVTYNLTGQEVFTG 288

Query: 249 VAVIGTEF------LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
           V   G +       L K + +  +  +  + +  +++  + I    +  G  +  +    
Sbjct: 289 VGSDGVDIFKCLADLKKAMQNSDQQSIQAQ-IGNLEKAQNQITLNVSKCGTRQNRLEIAE 347

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             L +    +   +S     +      Q +     ++  Y I +++   S+L++L
Sbjct: 348 SNLADLELKVTELMSNIEDADLTQLVTQFTMKEVSLKACYAIASEIGNTSVLDFL 402


>gi|300311359|ref|YP_003775451.1| flagellar hook-filament junction protein [Herbaspirillum
           seropedicae SmR1]
 gi|167731107|emb|CAP19666.1| N-terminus flagellar protein [Herbaspirillum seropedicae]
 gi|300074144|gb|ADJ63543.1| flagellar hook-filament junction protein, N-terminus flagellin
           protein [Herbaspirillum seropedicae SmR1]
          Length = 377

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/378 (15%), Positives = 119/378 (31%), Gaps = 30/378 (7%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  I++  N     +    +KL +++   Q               L+ +Q  +   + 
Sbjct: 3   ISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       LS+ Q +L SM  ++  +   ++        N +    A  ++ +    +
Sbjct: 63  KTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAEVL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLN-------GYFTKDSLAKKSFDQMLQGFLEENSKSL 177
            +AN  D  G YLF+G  S+ +P          Y           D      +  + +++
Sbjct: 123 GYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRVMDISASGQAI 182

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKF------SDDEYWANNWSNASDHNIKYRIKDTEG 231
             G   ++     + M +FI  L          +D+    N    A           T  
Sbjct: 183 FQGNGQDIF----KTMNNFINVLSVPVTEAANKADETAANNFVYPAGSGLTPIAAYKTSL 238

Query: 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKML---------STVQQGLS 282
             ++A          +F A    +  S         V+  +           + +   LS
Sbjct: 239 AQLNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASFNTQIDSLLS 298

Query: 283 GIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST---LINKIE 339
            +   +A +G  +  ++      +         I+  +G      +  +S        + 
Sbjct: 299 NVTTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTYLS 358

Query: 340 MSYMITTKLQKLSILNYL 357
            +  +      LS+LNYL
Sbjct: 359 AAQKVFVTTSGLSLLNYL 376


>gi|23016695|ref|ZP_00056448.1| COG5651: PPE-repeat proteins [Magnetospirillum magnetotacticum
           MS-1]
          Length = 712

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/349 (11%), Positives = 98/349 (28%), Gaps = 20/349 (5%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T            ++         ++ +G  +     + +   +++ ++ E+    
Sbjct: 2   TRIGTLGANTAFVNRILDIQTRVQTEQVQVTSGLKAQSYDGIASGTNTVINFQNEQAIAQ 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT-DNNKFPINAGMLRDSYE 122
             + +N++   +L  +   ++ ++K +      L    +    +             + +
Sbjct: 62  RFIDNNNVWNTKLEAATTAIAGVKKTLTIFRDSLQSFRQNNPKNEQNIKSIQNTAFQTLQ 121

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLN-----------GYFTKDSLAKKSFDQMLQGFLE 171
           S          GQYLFSG   S+ P+             Y    +    + +  LQ    
Sbjct: 122 SIAADLGTNVNGQYLFSGGRVSDVPIQLPAGSLTEFQSLYDGSINTVSTTRNANLQEVSI 181

Query: 172 ENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYR----IK 227
              ++     +     +   +   F                   N  D  +K +    I 
Sbjct: 182 SKLEATAMSFNGTNGVITPAKADAFKNVYAGSRITVSESTAQPPNNGDFTVKSKAMCNIA 241

Query: 228 DTEGIDVSANVNMRGIRDIMFVA--VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGII 285
            T   + ++  N+                +       DG  N+      S     +    
Sbjct: 242 GTPLAEGNSTTNVISFGTTPTNILDTATGQLNFTFAPDGTMNMSANTAGSLSAMTVGSKF 301

Query: 286 EQRAVL--GISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLS 332
                L  G +          + NKN +++   S  +  ++  A   L+
Sbjct: 302 TISPQLAGGSATTGYEGAYEVVSNKNGVVNFKTSYDVAKDESVASTALT 350



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 16/163 (9%)

Query: 211 ANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTE--FLSKNLTDGARN- 267
           ++ W       +++R+     +DV    +       +    +  +  F +    D  +  
Sbjct: 549 SSTWYKGDTLQLQHRVDIDRTVDVGIYASDPAFEKGIRALSLIAQGQFGTAGGLDSHQER 608

Query: 268 -----VLTKKMLSTVQQGL--------SGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
                 L    L +   G           +    ++L  + K I+ +          +  
Sbjct: 609 ISQALYLVNDALESPAAGTPPFGKEKTGDVKSVASLLDGTRKTISLKNEKHTQFIGFLSK 668

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++    V++     ++ +    +E SY I  +L+ LS+LNY+
Sbjct: 669 RVADIAQVDKTEIATKMLSDQTALEGSYQILAQLKNLSLLNYM 711


>gi|15801200|ref|NP_287217.1| flagellar hook-associated protein FlgL [Escherichia coli O157:H7
           EDL933]
 gi|15830715|ref|NP_309488.1| flagellar hook-associated protein FlgL [Escherichia coli O157:H7
           str. Sakai]
 gi|168747141|ref|ZP_02772163.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758624|ref|ZP_02783631.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764495|ref|ZP_02789502.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767742|ref|ZP_02792749.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773928|ref|ZP_02798935.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783613|ref|ZP_02808620.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790018|ref|ZP_02815025.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC869]
 gi|168802028|ref|ZP_02827035.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC508]
 gi|195935473|ref|ZP_03080855.1| flagellar hook-associated protein FlgL [Escherichia coli O157:H7
           str. EC4024]
 gi|208809642|ref|ZP_03251979.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816148|ref|ZP_03257327.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822389|ref|ZP_03262708.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395853|ref|YP_002269929.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328431|ref|ZP_03444513.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792465|ref|YP_003077302.1| flagellar hook-associated protein FlgL [Escherichia coli O157:H7
           str. TW14359]
 gi|261227012|ref|ZP_05941293.1| flagellar hook-filament junction protein [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256246|ref|ZP_05948779.1| flagellar hook-filament junction protein [Escherichia coli O157:H7
           str. FRIK966]
 gi|291282103|ref|YP_003498921.1| Flagellar hook-associated protein 3 [Escherichia coli O55:H7 str.
           CB9615]
 gi|12514624|gb|AAG55829.1|AE005318_6 flagellar biosynthesis; hook-filament junction protein [Escherichia
           coli O157:H7 str. EDL933]
 gi|13360925|dbj|BAB34884.1| flagellar hook-filament junction protein 3 FlgL [Escherichia coli
           O157:H7 str. Sakai]
 gi|187770518|gb|EDU34362.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018057|gb|EDU56179.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999096|gb|EDU68082.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354584|gb|EDU73003.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363052|gb|EDU81471.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365534|gb|EDU83950.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370497|gb|EDU88913.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC869]
 gi|189375934|gb|EDU94350.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC508]
 gi|208729443|gb|EDZ79044.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732796|gb|EDZ81484.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737874|gb|EDZ85557.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157253|gb|ACI34686.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           EC4115]
 gi|209773308|gb|ACI84966.1| flagellar hook-filament junction protein 3 FlgL [Escherichia coli]
 gi|209773310|gb|ACI84967.1| flagellar hook-filament junction protein 3 FlgL [Escherichia coli]
 gi|209773312|gb|ACI84968.1| flagellar hook-filament junction protein 3 FlgL [Escherichia coli]
 gi|209773314|gb|ACI84969.1| flagellar hook-filament junction protein 3 FlgL [Escherichia coli]
 gi|209773316|gb|ACI84970.1| flagellar hook-filament junction protein 3 FlgL [Escherichia coli]
 gi|217318858|gb|EEC27284.1| flagellar hook-associated protein 3 [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591865|gb|ACT71226.1| flagellar hook-filament junction protein [Escherichia coli O157:H7
           str. TW14359]
 gi|290761976|gb|ADD55937.1| Flagellar hook-associated protein 3 [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189766|gb|EFW64422.1| Flagellar hook-associated protein FlgL [Escherichia coli O157:H7
           str. EC1212]
 gi|320637534|gb|EFX07334.1| flagellar hook-associated protein FlgL [Escherichia coli O157:H7
           str. G5101]
 gi|320643095|gb|EFX12296.1| flagellar hook-associated protein FlgL [Escherichia coli O157:H-
           str. 493-89]
 gi|320648553|gb|EFX17208.1| flagellar hook-associated protein FlgL [Escherichia coli O157:H-
           str. H 2687]
 gi|320653867|gb|EFX21941.1| flagellar hook-associated protein FlgL [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659347|gb|EFX26916.1| flagellar hook-associated protein FlgL [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664482|gb|EFX31633.1| flagellar hook-associated protein FlgL [Escherichia coli O157:H7
           str. LSU-61]
 gi|326339305|gb|EGD63119.1| Flagellar hook-associated protein FlgL [Escherichia coli O157:H7
           str. 1125]
 gi|326344734|gb|EGD68482.1| Flagellar hook-associated protein FlgL [Escherichia coli O157:H7
           str. 1044]
          Length = 317

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 107/352 (30%), Gaps = 48/352 (13%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   +N     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEVNGDYVGGTESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D      N     D  I                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDGSASETNLFAMLDSAI------------------- 208

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                   A + T                 K    ++  L+ ++  RA LG     +   
Sbjct: 209 --------AALKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 261 DSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|156934433|ref|YP_001438349.1| flagellar hook-associated protein FlgL [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532687|gb|ABU77513.1| hypothetical protein ESA_02264 [Cronobacter sakazakii ATCC BAA-894]
          Length = 314

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 102/336 (30%), Gaps = 37/336 (11%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
             +     +K  E+M TG+  +            +   Q +    +   + +  T+++S 
Sbjct: 10  ITDSQSTWLKYGEQMSTGKRVNRPSDDPIAAAQAVVLSQAQAQNEQYTQARTFATQKVSL 69

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYL 137
             + LS +  ++      +V    G   +      A  L+   +  +  AN TD  G+Y+
Sbjct: 70  ESSVLSQVTSVITSAQEKIVYANNGTLSDTDRASVATDLQGMRDQLLNLANSTDGNGRYI 129

Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
           F+G  +   P +G     +    +          EN    +      V       + D I
Sbjct: 130 FAGYKTDAAPFSGTPGNITYNGGT----------ENITQQVDSARTMVIGHTGDLVFDRI 179

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                   D                       + +D +       +           E  
Sbjct: 180 TSNAKPEPDGSP--------------SETNLFKMLDSAIAALKTPM-----------EGA 214

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
            +    G  + ++K     +   L  +    A +G  +K +         +       +S
Sbjct: 215 DETTQQGLLDAVSKTSRG-LSNALDNVGTVLAEVGTQQKELENLDQLGAERTLGQTAQMS 273

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + V+ ++A +        ++ SY   + +Q +S+
Sbjct: 274 NLVDVDWNSAISSYVMQQAALQASYKAFSDMQGMSL 309


>gi|157693941|ref|YP_001488403.1| flagellar hook-associated protein FlgL [Bacillus pumilus SAFR-032]
 gi|157682699|gb|ABV63843.1| flagellar hook-associated protein 3 [Bacillus pumilus SAFR-032]
          Length = 303

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 110/347 (31%), Gaps = 55/347 (15%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
              +     +  +   K++E+  TG+               L++        +  ++ + 
Sbjct: 10  QNSLRN-ISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNEQYQNNLNE 68

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
               + TS+  ++ +  I+ ++   ++    G             +    +  +   N  
Sbjct: 69  AQNWIDTSETSVTEIIDIMSNVRDKVLDAANGTKQPEDLAAIGVEIGQMKKQIIDAMNTQ 128

Query: 132 DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
             G+++F+G N++ KP+         A  +F    + + + NS        + + ++N+ 
Sbjct: 129 MLGKFVFNGTNTNVKPVVE------NADGTFTFNFENYTDANSVKSNISDGITL-NVNSN 181

Query: 192 QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEG-IDVSANVNMRGIRDIMFVA 250
            ++ F                   +AS  N+   + D E  +      N           
Sbjct: 182 PISAF----------------GGQSASGQNVIEMLTDLENSLKNGTFANS---------- 215

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
                                  L ++ Q    +  +R+ LG     ++     L ++  
Sbjct: 216 --------------------DDALGSIDQFKEVMSAERSDLGARSNRVDLVGSRLTSQFQ 255

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++    S +  VE   A   L         +   T K+ + S++++L
Sbjct: 256 VLKDAKSNNEDVESEKAILDLLQQETVNRAALATTAKVIQPSLVDFL 302


>gi|332089153|gb|EGI94262.1| flagellar hook-associated protein 3 [Shigella boydii 5216-82]
          Length = 317

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 108/352 (30%), Gaps = 48/352 (13%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   + F+ 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQFLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEANGDYVGGTESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D      N     D  I                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDGSASETNLFAMLDSAI------------------- 208

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                   A + T                 K    ++  L+ ++  RA LG     +   
Sbjct: 209 --------AALKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 261 DSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|307546961|ref|YP_003899440.1| flagellar hook-associated protein FlgL [Halomonas elongata DSM
           2581]
 gi|307218985|emb|CBV44255.1| flagellar hook-associated protein FlgL [Halomonas elongata DSM
           2581]
          Length = 405

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/403 (14%), Positives = 124/403 (30%), Gaps = 51/403 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST ++FE+          D + + +++ +G+            +  +   Q K    + 
Sbjct: 3   ISTVTMFEQSVSSMNRQQSDFLDVSQQIASGRRVVNPSDDPQAASRAVGVGQAKAVTEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             S       LS  ++ L+S+   V      LV        +      A  LR  YE+ V
Sbjct: 63  GDSRVSARNALSQGESVLNSVSDAVTSAKTLLVQASSDTLSDADRESVASELRGVYETLV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN-------GYFTKDSLAKKSFDQML----------- 166
             AN TD  G+YLF G      P          Y     + ++  D              
Sbjct: 123 GQANATDGNGRYLFGGYEDGSPPFVENGDGHMEYVGSTEVRRQRIDASRVMEVSDSGQEI 182

Query: 167 -------QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASD 219
                   G++ E +         +          D+ K+ E  F++D    +   +A  
Sbjct: 183 FRSVPSGAGYVAEAAAGNDGSLTFKGPQTLDADADDYGKRFEISFAEDGGTLSYSVSADG 242

Query: 220 HNI-------------------------KYRIKDTEGIDVSANVNMRGIRDIMFVAVIGT 254
             +                         +    D+  +  + +++    + +     +  
Sbjct: 243 APVAGMQDVAYQAGDSLRFGGLSMELKGEPADGDSLTVGPAESMDPDLFQTLEKAIGVLE 302

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
                +    AR       +  +   L  ++  RA +G     ++       N+    + 
Sbjct: 303 NPAETSREKAARGNTLNTAMRELDHSLDNVLTVRASMGARLNELDVVDSVSDNRMLNYEQ 362

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +S  + ++   A ++ S     ++ S      L+ +S+  YL
Sbjct: 363 TLSDLVDLDYAEAISEYSLRQIGMQASQKTFADLKGMSLFQYL 405


>gi|253702424|ref|YP_003023613.1| flagellar hook-associated protein 3 [Geobacter sp. M21]
 gi|251777274|gb|ACT19855.1| flagellar hook-associated protein 3 [Geobacter sp. M21]
          Length = 306

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 97/346 (28%), Gaps = 63/346 (18%)

Query: 19  TKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
            ++       L E++ +G    + SD  L        +L+ +++     +   + +    
Sbjct: 16  LQKGRSSIDSLQEQVASGFNINRPSDDPLS----ARQLLDLQEQIAAGDQYSSNITKADL 71

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
            L  +   L+SM  ++Q +      ++ G  D          L       +   N     
Sbjct: 72  LLDVTSTALTSMAGLLQQVKKIAGDMVSGTQDATTVSGAVTNLTQLKSQLIDMGNTRVGD 131

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           QY+F+G      P        S      +  +      N  + +AG  L           
Sbjct: 132 QYVFAGFK--NSPPFDTLGNFSGTDDLVNVEIA--PGSNVATNVAGGKL----------- 176

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDV---SANVNMRGIRDIMFVAV 251
                           A   S A+       +   E ID    + N N +          
Sbjct: 177 ---------LLGGTPPAAVGSGATAG--TSPVNILETIDALILAINGNDKA--------- 216

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
                    + DG +N                     + +   +  ++  +  + N  N 
Sbjct: 217 --------GIADGVKNAAAAAQQV---------ATAISDVAGRQVRLDNMKTMIGNNQNT 259

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +         V+       LS        +   T KL +LS+L+Y+
Sbjct: 260 LKNIYGDIQNVDYAKIGVLLSQKTTAFNAALSATAKLSQLSLLDYM 305


>gi|254522599|ref|ZP_05134654.1| flagellar hook-associated protein 3 [Stenotrophomonas sp. SKA14]
 gi|219720190|gb|EED38715.1| flagellar hook-associated protein 3 [Stenotrophomonas sp. SKA14]
          Length = 400

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/397 (13%), Positives = 115/397 (28%), Gaps = 43/397 (10%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            ++ ISTS +F +   L          L +++ TG              + +  ++    
Sbjct: 1   MSSRISTSMMFNQSVSLMMAKQAKLSHLEQQIATGSKIVSAKDDPVAAGAAVGLDRSLAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           +     +   V  RL   +  L+ +  ++  +    +                  L    
Sbjct: 61  LDRMKLNAGNVQNRLGVQENTLAQVNDLMARVNDLTIQASNPALSAPDKKTLITELNQIR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTK------------DSLAKKSFDQMLQG 168
           +  ++ AN  D  G+Y+F G N  + P      K            +          L G
Sbjct: 121 DGLLSLANADDGTGRYVFGGTNDGDPPFAKINGKVVYRGDQTQRQIEVGPDTYVRDALPG 180

Query: 169 --FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASD------- 219
                              +      +   I +      + + ++  ++ A         
Sbjct: 181 SEIFMRIPTGDGFVDGGAAAGNTGNGVLTNITRDGSDSWNGQAFSIRFTAADQYQVLDGA 240

Query: 220 -----------------HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLT 262
                            + ++ +I        S NV     RDI          L  +  
Sbjct: 241 GNVTGTGTYKAGDNVEVNGVRLQITGAPAAGDSFNVTPASSRDIFDTMDKLIAALDADTG 300

Query: 263 D----GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
                 A+    +  L  V +    +I+ RA  G   K ++      +     + T +S+
Sbjct: 301 TTAKMSAQQNELQSALRDVARASERMIDSRAAGGAQLKALDNAADMREANGVTLKTTLSQ 360

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
              ++   A +Q       ++ +  I +++Q +S+ N
Sbjct: 361 MRDLDYADALSQYQLQSTALQAAQTIFSQMQSMSLFN 397


>gi|188580159|ref|YP_001923604.1| hypothetical protein Mpop_0891 [Methylobacterium populi BJ001]
 gi|179343657|gb|ACB79069.1| conserved hypothetical protein [Methylobacterium populi BJ001]
          Length = 597

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 68/213 (31%), Gaps = 9/213 (4%)

Query: 153 TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN 212
           T  S    + +  L       +           + ++ +++        +  S       
Sbjct: 385 TLQSALTSAANTELSASSTARAALNFFEGSP-AAGLSPRRVAADGNGYAEAASAKTVIWY 443

Query: 213 NWSNASDHNIKYRI--KDTEGIDVSANVNMRGIRDIMFVAVIGTE----FLSKNLTDGAR 266
               ASD      +    +  + + A  N   IR  +              +  +     
Sbjct: 444 KGDTASDPRASATVQAGASRTVAIGAQANEEAIRRTLAGLAAVAAESFTTATGTVDTARF 503

Query: 267 NVLTKKMLSTV--QQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQ 324
             ++ +  S +   +G   + +     G++  ++   +         +   +     V  
Sbjct: 504 EAVSGRAASLLTASEGQQSLEQLGTDFGLAASSMANAKSVANTTKATLQDSLDGVDTVST 563

Query: 325 HTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               A+L +L  +++ SY +T+ L ++S++NYL
Sbjct: 564 EEVAAKLLSLQTQLQASYKVTSILSEMSLVNYL 596



 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 63/180 (35%), Gaps = 1/180 (0%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
           T+  + +  F+R +     +      L  ++ TG++++    LG   T+ L      +  
Sbjct: 4   TSFAAGTYRFDRQSASLVSMKSQLDGLARQLSTGRTAETYGGLGVGRTTSLSAHAAISAQ 63

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
              L + +    R+  + A L+ ++ +       L  ++    +         +  ++  
Sbjct: 64  DGYLAAITSAETRVKLTSASLTQLKSLSDSTRSNLTGIV-ASRNEALPATTVQLAANNLS 122

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           + V   N    G Y+FSG  +  +P+       +         L+  + E   + L    
Sbjct: 123 AAVDALNQQAGGVYVFSGRATDTEPVVSQDAILNGVPAEGLDGLRTLIAEQKAADLGPLG 182


>gi|212634355|ref|YP_002310880.1| flagellar hook-associated protein FlgL [Shewanella piezotolerans
           WP3]
 gi|212555839|gb|ACJ28293.1| Flagellin [Shewanella piezotolerans WP3]
          Length = 400

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 139/407 (34%), Gaps = 64/407 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEWEQEKN 60
           IST+ +F +      +    + K+ E++ +G+       D    +G         +Q+  
Sbjct: 3   ISTAQMFNQTTTNVMKSQSATSKIMEQLASGKKVSTAGDDPVAAIGID-----NLKQQGA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + + +    + RL+ S++ + + + +V+ M   ++  + G   +      A  +R S
Sbjct: 58  VVDQFIKNIDYASNRLAVSESKIGNAENVVESMREQMLRSVNGTLSDADRQTIADEMRGS 117

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
            E  ++ AN  D  G  LF+G  ++ +P    F  +     S D  ++  +  +  ++ +
Sbjct: 118 LEELLSIANSKDESGNSLFAGFKTNTEPFA--FDNNGKVVYSGDSGIRDSVVASGVTVGS 175

Query: 180 GQHLEVSSMNAQQM-----TDFIKQLEDKFSDDEY----------------WANNWSNAS 218
               +   MNA         ++    + KFS +                  + +N +   
Sbjct: 176 NIPGDSVFMNAANAIGDYSVNYSSTQQGKFSVESAKITDPTLPVTGNYTFDFVDNGAGGL 235

Query: 219 DHNIKYRIKDTEGI----------------------------DVSANVNMRGIRDIMFVA 250
           D N+         I                            +++   N      +    
Sbjct: 236 DVNVTDSAGTVTTIPNFDATQPLTVDGIELQLKGTPQAGDSFELAPEQNSNIFDTLNSAI 295

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
            +  +     L          ++L+ V  G   +   R+V G S K++       + +  
Sbjct: 296 ALLED--GSKLNSPQGQAEMAQLLNNVSSGQEQMATSRSVAGNSLKSLENYTSTHKEEQL 353

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  + +S    ++   A  +       +     + +K+  +S+ +YL
Sbjct: 354 VNQSALSLLEDLDYAEAITEFEKQQMSLNAVSSVFSKVGSMSLFDYL 400


>gi|170768098|ref|ZP_02902551.1| flagellar hook-associated protein 3 [Escherichia albertii TW07627]
 gi|170122864|gb|EDS91795.1| flagellar hook-associated protein 3 [Escherichia albertii TW07627]
          Length = 317

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 112/348 (32%), Gaps = 40/348 (11%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITSSQAEWMKYGEQMSTGKRVVNPSDDPVAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ L  +   +Q     +V    G   ++     A  ++   +  + 
Sbjct: 64  LTRTFATQKVSLEESVLGQVTTAIQSAQEKIVYASNGTLSDDDRASLATDIQGIRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
            AN TD  G+Y+F+G  +   P +    +    K+S  Q +       S  +        
Sbjct: 124 LANTTDGNGRYIFAGYKTESAPFSETDGEYIGGKESIKQQVDA---SRSMVIGHTGDKIF 180

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           +++ +  +                                    E    S+  N+  + D
Sbjct: 181 NNITSNAVK-----------------------------------EPDGSSSETNLFAMLD 205

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
               A +        +          K    ++  L+ ++  RA LG     +       
Sbjct: 206 SAIAA-LKIPVEESEVDKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLG 264

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 265 SDRALGQTQQMSDLVDVDWNATISSYVMQQTALQASYKAFTDMQGLSL 312


>gi|206603516|gb|EDZ39996.1| Flagellar hook-associated protein (FlgL) [Leptospirillum sp. Group
           II '5-way CG']
          Length = 312

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 107/338 (31%), Gaps = 46/338 (13%)

Query: 6   ISTSSIFERMNILTKELNK--DSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           I  + +     ++        +   +  ++ +G+  +       R+   L   +  +   
Sbjct: 2   IRVTGLMTNREVIASHDQAIDNLYDVDRQISSGKQFETPGDAPGRMGESLRINRNLSVTR 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             + +      RL   ++ L  +  ++    G  + +           + A  L+ + E 
Sbjct: 62  RIIENAREGANRLKLMESILDQVGTLLIRAKGLAIRMANDTMTAEDRRVGAQELKRTLEQ 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
            V+ AN     QYLFSG N +  P +    K +    ++   L     E  +   + +  
Sbjct: 122 VVSLANTKAGEQYLFSGTNVTRPPFHFTDPKLNPGSVAY---LGNHRSETVQQGFSPRQR 178

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           E   M   +  D                             RI      D   N  +  +
Sbjct: 179 EAGLMPVTEAGD-----------------------------RILGNSAADPFGNKPLPVM 209

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           R  +             L++        + +  + + +  + E+ AVLG  E+ I     
Sbjct: 210 RRFLLGL----------LSNDQPQ--ITRSIDELDRTIHSVTERAAVLGTRERAIRTTVD 257

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
            L+       T  S++  V+   A ++L+   N + +S
Sbjct: 258 RLEKYTISQKTLKSQNEDVDVPKAVSKLALNQNFLALS 295


>gi|300696920|ref|YP_003747581.1| flagellar hook-filament junction protein protein 3 [Ralstonia
           solanacearum CFBP2957]
 gi|299073644|emb|CBJ53164.1| flagellar hook-filament junction protein protein 3 [Ralstonia
           solanacearum CFBP2957]
          Length = 316

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 117/353 (33%), Gaps = 42/353 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+  F       +    + VKL +++ TG + +      A +  +L+ +Q ++   + 
Sbjct: 3   VSTAQFFAASTASMQSTQSNLVKLQQQISTGIALNSAGDNPAAMGQVLQLQQSQDTNDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      RL++  + LS +   +Q      +        +++       ++  Y+  +
Sbjct: 63  QVNRDATNARLTSVSSALSDVISTLQQGKQSTIAANTSLLTDSQRVGILAQVKQQYQQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  G  LF G N +  P          A       +Q   + +  + ++G  + 
Sbjct: 123 SSANQRDASGVALFGGANGTTDPFVSSAGSVQYAGSGQPPTVQVAQDISMPNSVSGDSVF 182

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V                                       R+ +T+  + S   N    +
Sbjct: 183 V---------------------------------------RVPNTDASNPS--ANQSVFK 201

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
               +    ++ ++ +          +   + +       ++ +  +G  +  I      
Sbjct: 202 TYENLITALSKPITTSADVTTMQAAVQTAQNNLDNAYQVALQAQVTVGTQQSQITTLNSS 261

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             N    +   ISK   V+  +A +Q S     ++ +    T +Q LS+  Y+
Sbjct: 262 GSNFGEQLKEQISKLQSVDYTSAISQFSQQQVSLQAAQKTFTSMQGLSLFQYI 314


>gi|222053740|ref|YP_002536102.1| flagellar hook-associated protein 3 [Geobacter sp. FRC-32]
 gi|221563029|gb|ACM19001.1| flagellar hook-associated protein 3 [Geobacter sp. FRC-32]
          Length = 306

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 99/339 (29%), Gaps = 48/339 (14%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            ++      +L E++ +G   +           IL  +       + L +       L+ 
Sbjct: 16  LQQGRSKLDQLQEQIASGSVINRPSDDPISTRQILAMQNGVTEGDQYLSNIEKGNIWLNI 75

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +   L+ M  I+  +      ++   TD N        L       +   N     QY+F
Sbjct: 76  TNTALTGMSSIMAQVKTIASNMISTSTDANMIANATTNLTQLKNQLIDLGNTQIGNQYVF 135

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
            G ++S  P +                     ++  K  +A       ++    +     
Sbjct: 136 GGFDNSTAPFDASGVFSGT-------------DDPMKVDIARNSSVAINITGGDLLRGGT 182

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
                 S                        + ID                     + ++
Sbjct: 183 PAVGAGSGATAGTR---------------PADIIDS------------------IDKLIA 209

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
              +  A +++    +  ++     I   ++ +  +   ++  +  + N  N +   IS 
Sbjct: 210 AITSSSAADIVDG--VKNMKASADQIAAAQSTVAGNMMRLDNAKTMIVNNQNTLKNIISS 267

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              V+   A  +LS      E +   T K+ +LS+L+Y+
Sbjct: 268 KQNVDYAKAATELSQQQTAFEAALSATAKISRLSLLDYI 306


>gi|218289684|ref|ZP_03493892.1| flagellar hook-associated protein 3 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240141|gb|EED07325.1| flagellar hook-associated protein 3 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 322

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 110/354 (31%), Gaps = 38/354 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+T+   ++     + +N     + E++ TG+  +        V+  ++   E + I+  
Sbjct: 3   ITTAMEQQQFLYNLENINTAMQNVQEQLSTGKVLNLPQDDPVAVSKDMDLASEMSQISAN 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT-DNNKFPINAGMLRDSYESF 124
           L + S     ++ +Q+ +  M   +Q +   LV  +      +      A  +    +  
Sbjct: 63  LSTISSGLSWMNATQSAMQGMVTQLQQIQSNLVAAMNTSNQSSAGLQGYAETIAQLIQGV 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              A+ T   +YLF G   +  P     T  +                  + +  G   +
Sbjct: 123 YQIADQTVGSRYLFGGQADNVAPTTYLKTSPNGT---------------PQVIPPGAGPQ 167

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +  N                DD         AS  N+   I +   I V+       + 
Sbjct: 168 STPYNP--------------FDDAN-------ASPPNVNEIIGNQVSIRVTVTAYDIFLT 206

Query: 245 DIMFVAVIGTEFLSKNLT-DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                  +                   K+ L+ +Q  L+ +I   A LG   + +   + 
Sbjct: 207 SPGGGPNLQDTLNDIQTDLQSGNTAGLKQDLTNLQANLNQVINLNAALGARIQRMTAAQN 266

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            L      +        G +      Q ST     E +  +  ++   ++++YL
Sbjct: 267 QLTQYQTNLSNLKGGIEGADMAQVMTQFSTDQVIYEAALQMGAQILLPTLVSYL 320


>gi|289433984|ref|YP_003463856.1| flagellar hook-associated protein FlgL, putative [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170228|emb|CBH26768.1| flagellar hook-associated protein FlgL, putative [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|313634356|gb|EFS00953.1| flagellar hook-associated protein 3 [Listeria seeligeri FSL N1-067]
 gi|313639050|gb|EFS04038.1| flagellar hook-associated protein 3 [Listeria seeligeri FSL S4-171]
          Length = 291

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 63/150 (42%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+     +      ++ +  K   ++ +G+  +   Q       IL +    + +   
Sbjct: 3   ISTNQQANTIINQLNNVSGNLAKYQLQVSSGKKYESMSQNPGATAQILSYNHVLSQLNRE 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+T++  LSSM   +  +   ++  + G +D N    +A  ++      +
Sbjct: 63  KTDVTEAKSLLNTAETSLSSMTTSMNRVNALVLQAINGTSDKNNMSQSAEEIKGLLGVLL 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
           + AN  D+G+Y+FSG ++S KP     T  
Sbjct: 123 SVANAEDDGRYVFSGSSTSVKPFTTDKTTG 152


>gi|89895773|ref|YP_519260.1| hypothetical protein DSY3027 [Desulfitobacterium hafniense Y51]
 gi|89335221|dbj|BAE84816.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 329

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 109/355 (30%), Gaps = 32/355 (9%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS + +   + +          KL  ++ TGQ  +          + L ++   +++ + 
Sbjct: 3   ISNNMLSRNLLLNLWAAQGRIDKLQNQLSTGQKINRPSDDPVGTENSLRFKSNISYLNQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY-ESF 124
             +       + T+   +  M  ++Q      +  +   T N++      +  D   E  
Sbjct: 63  KANAKEGIAYMDTTDDTMGEMTSMIQRAKELAIRAMNTSTVNDEDRKKIAIEIDQIREHV 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           +  AN     +Y+F G  ++ +P                                    +
Sbjct: 123 IELANTKVGSKYIFGGT-ANVEPF----------------------------PKGATEWQ 153

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            S    +        +E   +  + +   W  A           T      +   +    
Sbjct: 154 GSDDTKKFQVGGDLSIEVSVNGHDLFGAGWEYAEVTIPAPTDPPTYEYKKGSGSGIAMFD 213

Query: 245 DIMFVAVIGTEFLSKNLTDGA--RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
            +  ++    E     + DG        + +LS ++     I + RA LG  +  ++   
Sbjct: 214 TLAQLSKALNESNINGVDDGTGTEEDGVQVLLSKLELQADHISDVRAQLGARQNRMDSVY 273

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             L + +  +   +S  +  +         T  +  + +  + TK+ + S+ ++L
Sbjct: 274 TQLDSTSANLGDSLSTVLYADIAETLVNFKTQDSIYQAALSVGTKIIQPSLADFL 328


>gi|187730939|ref|YP_001880748.1| flagellar hook-associated protein FlgL [Shigella boydii CDC
           3083-94]
 gi|187427931|gb|ACD07205.1| flagellar hook-associated protein 3 [Shigella boydii CDC 3083-94]
          Length = 317

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 111/356 (31%), Gaps = 56/356 (15%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGIRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNG----YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D         +AS+ N+                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDG--------SASETNL------------------- 200

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG----LSGIIEQRAVLGISEKN 297
                  +        +      A   +    L    +G    L+ ++  RA LG     
Sbjct: 201 ----FAMLDSAIAALKTPVADSEADKEIAAAALDKTNRGLKNSLNNVLTVRAELGTQLNE 256

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +        ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 257 LESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|307265480|ref|ZP_07547035.1| flagellar hook-associated protein 3 [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919434|gb|EFN49653.1| flagellar hook-associated protein 3 [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 297

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 94/332 (28%), Gaps = 58/332 (17%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             K    + TG+           V + L    +         +       L  + + LS 
Sbjct: 23  LQKNQNMLSTGKRISRPSDDPVAVAASLRIRTDMARNDAYTKNADDAKSWLDITDSALSQ 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           +  ++Q      V    G             +       +   N    G+Y+F+G  ++ 
Sbjct: 83  LNDLLQRTRELAVEGSNGTLTQEDMQKIVNEIEQLKAQMIQVGNTQYNGRYIFAGFKTTT 142

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
           +P +      +    S D  +  F      +                             
Sbjct: 143 QPFSE-----TNNSYSGDNGIIEFEMGPGGN----------------------------- 168

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGA 265
                              +I      D   NV+  G   +    ++  + L   L  G 
Sbjct: 169 -------------------KIAVNVTGDKVFNVDSTGTSQL----LVMMDNLKSALDSGD 205

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
              L+  +++ V + +  ++  RA +G     I+  +  LQN N      +SK+   +  
Sbjct: 206 HQALSN-LIADVDKQMENVLAVRAEVGAKSNRIDLIQNRLQNDNYNFTALLSKNEDADLA 264

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                L    N    S     ++ + S++++L
Sbjct: 265 QVITNLQMDENVYRASLAAGARIIQPSLIDFL 296


>gi|251772403|gb|EES52970.1| probable flagellar hook-associated protein, FlgL [Leptospirillum
           ferrodiazotrophum]
          Length = 313

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 103/321 (32%), Gaps = 43/321 (13%)

Query: 21  ELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQ 80
              ++  +  +++ +G  +D        ++ +L   +      + + +      R++  +
Sbjct: 19  RATENLYESEKQVSSGLRADTPGDAPEAMSEVLRVNRSLAVTGQIIQNAREGATRIALME 78

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
           + L+ +  I+    G  +    G  D+    I A       E  V  AN     QYLF G
Sbjct: 79  SILTQIDNIMIRAKGLAIRQANGTMDSQDRRIAAEEAERLLEQTVALANTRGGEQYLFGG 138

Query: 141 INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200
            N S  P   +   D   ++ F    QG  + ++           + +    M       
Sbjct: 139 TNISVPP---FLLSDPQKEEPFIVSYQGNHKSSTIQQGFTPSFRQAGLLKTTMAG----- 190

Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN 260
            D    D         A + N+ +                   R  +           KN
Sbjct: 191 -DTLLGDSK------RAPNANLAF----------------PAFRRFI--------LGLKN 219

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
             D A        +      L  + E+ AVLG  E+ +      L+     +    S++ 
Sbjct: 220 NDDKAIQA----AIGEFDLALRKVSERSAVLGTYERALRSTISRLEKYRTDLKVLRSQTE 275

Query: 321 GVEQHTAHAQLSTLINKIEMS 341
            V+   A ++++   N +E+S
Sbjct: 276 DVDIPRAASRMALSQNLLEVS 296


>gi|170020521|ref|YP_001725475.1| flagellar hook-associated protein FlgL [Escherichia coli ATCC 8739]
 gi|169755449|gb|ACA78148.1| flagellar hook-associated protein 3 [Escherichia coli ATCC 8739]
 gi|320173536|gb|EFW48732.1| Flagellar hook-associated protein FlgL [Shigella dysenteriae CDC
           74-1112]
          Length = 317

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 111/356 (31%), Gaps = 56/356 (15%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNG----YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D         +AS+ N+                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDG--------SASETNL------------------- 200

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG----LSGIIEQRAVLGISEKN 297
                  +        +      A   +    L    +G    L+ ++  RA LG     
Sbjct: 201 ----FAMLDSAIAALKTPVADSEADKEIAAAALDKTNRGLKNSLNNVLTVRAELGTQLNE 256

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +        ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 257 LESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|85712261|ref|ZP_01043312.1| Flagellin [Idiomarina baltica OS145]
 gi|85693888|gb|EAQ31835.1| Flagellin [Idiomarina baltica OS145]
          Length = 404

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/403 (14%), Positives = 137/403 (33%), Gaps = 53/403 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ +F+R     +       K+ +++                + ++          + 
Sbjct: 3   ISTNLMFQRGLDSLQRSESALYKVQQQLTRQTKILSPSDDPIANSQVMNLNNALAQNEQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +++ +   L  S+A+L  +   +Q      V ++ G    +     A  LR   +  V
Sbjct: 63  MRNSTSLEANLRQSEANLDGVNSGLQRARELAVGVVNGSYSADDRKAVAKELRAIEKQLV 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDS--------------------LAKKSFDQ 164
             AN  D  G+Y+F+G  S ++P+    +  S                     A +   +
Sbjct: 123 DQANARDAQGEYMFAGFQSRKEPMQYNASTQSYQYVSDQGARNIQLTPNLKLAANEPGSK 182

Query: 165 MLQGFLEENSKSLLAGQHL----------EVSSMNAQQMTDFIKQLEDKFSDDEYWANNW 214
                 +    ++ +GQ+L          + +    QQ ++   +  +   D      + 
Sbjct: 183 PFANVSQRVDINVESGQNLVGELRVSNREQFTDFTEQQQSNGNPRDFNISFDGAG-NYSI 241

Query: 215 SNASDHNIKY-------------RIKDTEGIDVSAN-----VNMRGIRD--IMFVAVIGT 254
            + S +N+                I   E    SA+      N   I    I  V+ +  
Sbjct: 242 DDTSGNNLASGAITDGKISFNGMDITLAEDASPSASDTIQISNGEPIGRNPITLVSDLAA 301

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
               K    G         L  + + +  ++  +A +G     +   R  L++ + +  T
Sbjct: 302 ALEGKGTN-GQWEDEASWALDDLNKAMDNVVGTQADIGARMNVMESARTQLRDADVVNQT 360

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   V+ + A  +L       + S  + +++ +LS+ +Y+
Sbjct: 361 ARAELADVDYNEAVTELVKNETLYQASQQVFSRINQLSLFDYV 403


>gi|150388563|ref|YP_001318612.1| flagellar hook-associated protein 3 [Alkaliphilus metalliredigens
           QYMF]
 gi|149948425|gb|ABR46953.1| flagellar hook-associated protein 3 [Alkaliphilus metalliredigens
           QYMF]
          Length = 318

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/356 (11%), Positives = 102/356 (28%), Gaps = 45/356 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +   M            +   +  TG+           ++  L+   +   + + 
Sbjct: 3   ITNNMMISSMMQNLNGNLLRMDQKQLQATTGKRIHKPSDDPIGISRSLKLRSDIKELEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L T++  + ++   V+ +    V    G    ++       + +     +
Sbjct: 63  KKNVDDTISWLETTELAVHNVGAAVERLRELTVQASNGVLTEDETKKIKAEVVELKNQII 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNG---YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           +  N T  G+Y+FSG  + +K  N    Y   +     + D +                +
Sbjct: 123 SLGNTTYGGKYVFSGKKTDQKLFNDAGEYNVSNLSIDHAPDAIDDKIKFNVGMGETIEIN 182

Query: 183 LEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242
           +    +           +      ++                 IK  E I+         
Sbjct: 183 VVGFELFGGDEVSHEDDVVGVEGGEQA--------------GIIKMIEDIEAKLEAGDTA 228

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
                             LTD  +N         +          R+ +G     +    
Sbjct: 229 -----------------GLTDDLQN---------IDIYYDQYSTIRSEIGAKVNRMELVE 262

Query: 303 VFL-QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  ++ N+++   SK    +    + QL    N    S  I +++ + +++++L
Sbjct: 263 NRIVDDRLNLMELQ-SKIEDADVAEVYMQLMAEENVYRSSLAIGSRIIQPTLMDFL 317


>gi|261341487|ref|ZP_05969345.1| flagellar hook-associated protein 3 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316283|gb|EFC55221.1| flagellar hook-associated protein 3 [Enterobacter cancerogenus ATCC
           35316]
          Length = 305

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 112/353 (31%), Gaps = 51/353 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS+    + M            KL E+M T +  +         T +++  +E++ I + 
Sbjct: 3   ISSLYNSDAMMAQLGVNGTRMSKLMEQMATQKRINVPSDDPVAATRLVQLNREQSAIKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + ++  LS  +AH+++M   +  M   L+    G   +         L    +S V
Sbjct: 63  QSNITGLSGSLSGQEAHVTAMSNQLLSMNDKLLAAANGTHSSEDMKGFGAELSSMLDSLV 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N   + G YLFSG  +  KP+    T+          + QG       ++  G ++ 
Sbjct: 123 ASINAQNESGGYLFSGTKTDTKPVVWDETQGK-------YVYQGNNGTRETTVANGVNV- 174

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
                               +++      +S + D                       + 
Sbjct: 175 --------------------TENTNVTAAFSGSGDD----------------------LE 192

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
            +  +  +  +    ++          +M+S   Q    +      LG  +  +      
Sbjct: 193 MLNKLKALSDKMQDPDVPVADYQDDINEMISLSGQTRDKVAALFTDLGGRQNRLTMLADA 252

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             + +   D  +      +  T    L    N ++++    + + +LS+ + L
Sbjct: 253 HTDVSMANDQVVRDLSDADPATTSINLQLYTNSVQITNKAYSMISQLSLFSML 305


>gi|197120115|ref|YP_002140542.1| flagellar hook-filament junction protein FlgL [Geobacter
           bemidjiensis Bem]
 gi|197089475|gb|ACH40746.1| flagellar hook-filament junction protein FlgL [Geobacter
           bemidjiensis Bem]
          Length = 306

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 105/340 (30%), Gaps = 51/340 (15%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            ++       L E++ +G + +           +L+ +++ N   +   + +     L+ 
Sbjct: 16  LQKGRSSIDTLQEQVASGLNINKPSDDPLSSRQLLDLQEQINAGEQYSSNITKAGLLLNV 75

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +   L+SM  ++Q +      ++ G  D          L       +   N     QY+F
Sbjct: 76  TSTALTSMSGLLQQVKKIAGDMVSGTQDPTSVSGAVTNLTQLKSQLIDMGNTRVGDQYVF 135

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
           +G   +  P +             D ++           +A      ++++  ++     
Sbjct: 136 AGFK-NSPPFDNL-----GNFSGTDDLVN--------VEIAPGSNVATNVSGGKL----- 176

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDT-EGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                       A   S A+       I  T + + ++ N N +                
Sbjct: 177 -----LLGGTPPAAVGSGATAGTSPVNILGTIDALILAINGNNKA--------------- 216

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
              + DG +N         V   +S +  +       +  ++  +  + N  N +     
Sbjct: 217 --GIADGVKNAAA--AAQQVSTAISDVAGR-------QVRLDNMKTMIGNNQNTLKNIYG 265

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               V+       LS        +   T KL +LS+L+Y+
Sbjct: 266 DIQNVDYAKIGVLLSQKTTAFNAALSATAKLSQLSLLDYM 305


>gi|126697803|ref|YP_001086700.1| flagellar hook-associated protein [Clostridium difficile 630]
 gi|115249240|emb|CAJ67053.1| Flagellar hook-associated protein FlgL (or HAP3) [Clostridium
           difficile]
          Length = 310

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 77/218 (35%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST  +        ++  +   K++ ++ T +  +       +   IL  + E   +   
Sbjct: 3   VSTGMMSSSYLNSLQDNLQRLDKVNRQINTTKEINKLSDNPYKAIKILNSKSEIKTMETY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +       L T+   L  +  ++ D+   LV    G   +++    +    +  +   
Sbjct: 63  IENCKDTADWLETTDTSLDQLGNLLADIKKGLVSSGNGSYSDDEIKTISNSTNEKMKEIA 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N T EG+Y+FSG N+   P+      D      F+  L      +S S+   Q + V
Sbjct: 123 NALNATHEGKYIFSGSNTGTPPVECVENADGSVSLKFNTSLNLNKLNDSLSVDVAQGISV 182

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK 223
                     F     D F      +   +N SD NIK
Sbjct: 183 DYNVKLSSLGFDPTKTDPFEKLNNISKKLANPSDANIK 220


>gi|26247223|ref|NP_753263.1| flagellar hook-associated protein FlgL [Escherichia coli CFT073]
 gi|91210235|ref|YP_540221.1| flagellar hook-associated protein FlgL [Escherichia coli UTI89]
 gi|110641259|ref|YP_668989.1| flagellar hook-associated protein FlgL [Escherichia coli 536]
 gi|117623269|ref|YP_852182.1| flagellar hook-associated protein FlgL [Escherichia coli APEC O1]
 gi|191172449|ref|ZP_03033990.1| flagellar hook-associated protein 3 [Escherichia coli F11]
 gi|215486292|ref|YP_002328723.1| flagellar hook-associated protein FlgL [Escherichia coli O127:H6
           str. E2348/69]
 gi|218557965|ref|YP_002390878.1| flagellar hook-associated protein FlgL [Escherichia coli S88]
 gi|227886559|ref|ZP_04004364.1| flagellar hook-associated protein FlgL [Escherichia coli 83972]
 gi|237706931|ref|ZP_04537412.1| flagellar hook-associated protein FlgL [Escherichia sp. 3_2_53FAA]
 gi|300974387|ref|ZP_07172599.1| flagellar hook-associated protein 3 [Escherichia coli MS 45-1]
 gi|300982572|ref|ZP_07176194.1| flagellar hook-associated protein 3 [Escherichia coli MS 200-1]
 gi|301051130|ref|ZP_07197961.1| flagellar hook-associated protein 3 [Escherichia coli MS 185-1]
 gi|306814068|ref|ZP_07448241.1| flagellar hook-associated protein FlgL [Escherichia coli NC101]
 gi|312968843|ref|ZP_07783050.1| flagellar hook-associated protein 3 [Escherichia coli 2362-75]
 gi|331646341|ref|ZP_08347444.1| flagellar hook-associated protein 3 [Escherichia coli M605]
 gi|26107624|gb|AAN79823.1|AE016759_97 Flagellar hook-associated protein 3 [Escherichia coli CFT073]
 gi|91071809|gb|ABE06690.1| flagellar hook-associated protein 3 [Escherichia coli UTI89]
 gi|110342851|gb|ABG69088.1| flagellar hook-associated protein 3 [Escherichia coli 536]
 gi|115512393|gb|ABJ00468.1| flagellar hook-associated protein FlgL [Escherichia coli APEC O1]
 gi|190907333|gb|EDV66931.1| flagellar hook-associated protein 3 [Escherichia coli F11]
 gi|215264364|emb|CAS08721.1| flagellar hook-filament junction protein [Escherichia coli O127:H6
           str. E2348/69]
 gi|218364734|emb|CAR02424.1| flagellar hook-filament junction protein [Escherichia coli S88]
 gi|222032836|emb|CAP75575.1| flagellar hook-associated protein 3 [Escherichia coli LF82]
 gi|226898141|gb|EEH84400.1| flagellar hook-associated protein FlgL [Escherichia sp. 3_2_53FAA]
 gi|227836763|gb|EEJ47229.1| flagellar hook-associated protein FlgL [Escherichia coli 83972]
 gi|294494044|gb|ADE92800.1| flagellar hook-associated protein 3 [Escherichia coli IHE3034]
 gi|300297214|gb|EFJ53599.1| flagellar hook-associated protein 3 [Escherichia coli MS 185-1]
 gi|300307153|gb|EFJ61673.1| flagellar hook-associated protein 3 [Escherichia coli MS 200-1]
 gi|300410630|gb|EFJ94168.1| flagellar hook-associated protein 3 [Escherichia coli MS 45-1]
 gi|305852705|gb|EFM53153.1| flagellar hook-associated protein FlgL [Escherichia coli NC101]
 gi|307553085|gb|ADN45860.1| flagellin [Escherichia coli ABU 83972]
 gi|307627447|gb|ADN71751.1| flagellar hook-associated protein FlgL [Escherichia coli UM146]
 gi|312286245|gb|EFR14158.1| flagellar hook-associated protein 3 [Escherichia coli 2362-75]
 gi|312945645|gb|ADR26472.1| flagellar hook-associated protein FlgL [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315287425|gb|EFU46836.1| flagellar hook-associated protein 3 [Escherichia coli MS 110-3]
 gi|315291061|gb|EFU50424.1| flagellar hook-associated protein 3 [Escherichia coli MS 153-1]
 gi|315296714|gb|EFU56009.1| flagellar hook-associated protein 3 [Escherichia coli MS 16-3]
 gi|320196435|gb|EFW71058.1| Flagellar hook-associated protein FlgL [Escherichia coli WV_060327]
 gi|323953231|gb|EGB49097.1| flagellar hook protein 3 [Escherichia coli H252]
 gi|323957907|gb|EGB53619.1| flagellar hook protein 3 [Escherichia coli H263]
 gi|324007923|gb|EGB77142.1| flagellar hook-associated protein 3 [Escherichia coli MS 57-2]
 gi|324013282|gb|EGB82501.1| flagellar hook-associated protein 3 [Escherichia coli MS 60-1]
 gi|330910897|gb|EGH39407.1| flagellar hook-associated protein FlgL [Escherichia coli AA86]
 gi|331045093|gb|EGI17220.1| flagellar hook-associated protein 3 [Escherichia coli M605]
          Length = 317

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 107/352 (30%), Gaps = 48/352 (13%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEADGDYVGGTESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D      N     D  I                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDGSASETNLFAMLDSAI------------------- 208

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                   A + T                 K    ++  L+ ++  RA LG     +   
Sbjct: 209 --------AALKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 261 DSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|332758244|gb|EGJ88567.1| flagellar hook-associated protein 3 [Shigella flexneri 4343-70]
          Length = 311

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 105/344 (30%), Gaps = 56/344 (16%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
                 + +K  E+M TG+            +  +   Q +   ++   + +  T+++S 
Sbjct: 10  ITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSL 69

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYL 137
            ++ LS +   +Q+    +V    G   ++     A  ++   +  +  AN TD  G+Y+
Sbjct: 70  EESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLNLANTTDGNGRYI 129

Query: 138 FSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQM 193
           F+G  +   P +     Y       K+  D      +                     ++
Sbjct: 130 FAGYKTETAPFSEANGDYVGGTESIKQQVDASRSMVIGH----------------TGDKI 173

Query: 194 TDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIG 253
            D I        D         +AS+ N+                          +    
Sbjct: 174 FDSITSNAVAEPDG--------SASETNL-----------------------FAMLDSAI 202

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGL----SGIIEQRAVLGISEKNINEERVFLQNKN 309
               +      A   +    L    +GL    + ++  RA LG     +        ++ 
Sbjct: 203 AALKTPVADSEADKEIAAAALDKTNRGLKNSLNNVLTVRAELGTQLNKLESLDSLGSDRA 262

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                 +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 263 LGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 306


>gi|220922289|ref|YP_002497591.1| hypothetical protein Mnod_2312 [Methylobacterium nodulans ORS 2060]
 gi|219946896|gb|ACL57288.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 599

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 60/191 (31%), Gaps = 3/191 (1%)

Query: 13  ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV 72
               ++  +       L  ++ TG+ S+    LG+   + L    + + +     +  L 
Sbjct: 16  NTRRLVALKGQ--LNDLSGQLATGRVSETYGGLGSGRGTSLNAHAQLSALDGYDAAIDLG 73

Query: 73  TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
             R+  + A +     +  D    L   +     + +  + + +       FV   N + 
Sbjct: 74  RIRIDLASAGVGQAATLASDTWNQLSNTVAQVGGSARLSLKS-IAEGRLGGFVDALNQSS 132

Query: 133 EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQ 192
            GQYLF G  +   P+       +    +    +   + E   + L         ++  Q
Sbjct: 133 AGQYLFGGRVTDIAPVETADKILNGDPAAALDGIGAVIAERQAADLGTGTPRTGRLSLTQ 192

Query: 193 MTDFIKQLEDK 203
               +   E  
Sbjct: 193 AGAALTLSESA 203



 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 13/219 (5%)

Query: 145 EKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKF 204
              L      +  A  +       F   ++   LA + + + +  A              
Sbjct: 388 SAALEDAAANELTASSATRAA-SDFFAGSASPGLAPRRVALDAAGAA------TGYVADP 440

Query: 205 SDDEYWANNWSNASD---HNIKYRIKDTEGIDVSANVNMRGIRD-IMFVAVIGTEFLSKN 260
           SD         +AS      +  ++   E + V    N   +R+ +  +AV  +   + +
Sbjct: 441 SDRTVIWYRGDDASADPRQTLSLKVSSGESVAVGLQANEPALRNALAGIAVAASVGFTDD 500

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQR--AVLGISEKNINEERVFLQNKNNIIDTYISK 318
             D AR       L +  Q  +G   ++    L ++   I  ++        ++   +  
Sbjct: 501 KADDARFAAFADRLKSFLQPDAGQTIEQINTDLSLASSRIQTQKSQNSATRLVLQNSLDG 560

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              V      A+L T+  +++ SY  T  L KLS+ NYL
Sbjct: 561 IESVSNEEVAAKLLTIQTQLQASYQTTATLAKLSLANYL 599


>gi|190574256|ref|YP_001972101.1| flagellar hook-associated protein FlgL [Stenotrophomonas
           maltophilia K279a]
 gi|190012178|emb|CAQ45801.1| putative flagellar hook-associated protein [Stenotrophomonas
           maltophilia K279a]
          Length = 400

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/397 (13%), Positives = 118/397 (29%), Gaps = 43/397 (10%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            ++ ISTS +F +   L          L +++ TG              + +  ++    
Sbjct: 1   MSSRISTSMMFNQSVSLMMAKQAKLSHLEQQIATGSKIVSAKDDPVAAGAAVGLDRSLAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           +     +   V  RL   +  L+ +  ++  +    +                  L    
Sbjct: 61  LDRMKLNAGNVQNRLGVQENTLAQVNDLMARVNDLTIQASNPALGAADKKTLITELNQIR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTK------------DSLAKKSFDQMLQG 168
           E  ++ AN  D  G+Y+F G N  + P      K            +          L G
Sbjct: 121 EGLLSLANADDGTGRYVFGGTNDGDPPFAKINGKVVYRGDQTQRQIEVGPDTYVRDALPG 180

Query: 169 --FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASD------- 219
                           +  +S     +   I +      + + ++  ++ A         
Sbjct: 181 SEIFMRIPTGDGFVDGVAAASNTGNGVLTNITRDGSDSWNGQSFSIRFTAADQYQVLDGA 240

Query: 220 -----------------HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLT 262
                            + ++ +I        S NV     RDI          L  +  
Sbjct: 241 GNVTGTGTFKAGDNVEVNGVRLQITGAPAAGDSFNVKPATSRDIFDTMDKLIAALDADTG 300

Query: 263 D----GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
                 A+    +  L  V +    +I+ RA  G   K ++      +  +  + T +S+
Sbjct: 301 TTAKMSAQQNELQSALRDVARASERMIDSRAAGGAQLKALDNAADMREANSVTLKTTLSQ 360

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
              ++   A +Q       ++ +  I +++Q +S+ N
Sbjct: 361 MRDLDYADALSQYQLQSTALQAAQTIFSQMQSMSLFN 397


>gi|192292819|ref|YP_001993424.1| hypothetical protein Rpal_4453 [Rhodopseudomonas palustris TIE-1]
 gi|192286568|gb|ACF02949.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 535

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 71/210 (33%), Gaps = 10/210 (4%)

Query: 153 TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN 212
               LA  S  +    F        +AG           Q+          ++ +    +
Sbjct: 331 ANGPLAAASAIKAGDDFFNNTPPLRVAGTAP--FGAATAQVAGTKANTIFWYNGEP---D 385

Query: 213 NWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF---LSKNLTDGARNVL 269
           + S+ +      +I D   +   A  + + +R  +    +        +   + G    L
Sbjct: 386 SASDPARGTAVAKIDDAITVQYGARADEQALRKQLQTVAVFAAVTTSATDPYSSGKIAAL 445

Query: 270 TKKMLSTVQ--QGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
            +++ + +    G   I   +A L  ++ +I            +  T +S   G+     
Sbjct: 446 NQRVAANLAVVPGQQSIQNMQAELAGAQASIKATANRQTQSKALAQTMLSSIEGINNDEV 505

Query: 328 HAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++  L   ++ SY  T+KL +LS++ +L
Sbjct: 506 ATKILALQTSLQASYETTSKLYQLSLVKFL 535



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 7/192 (3%)

Query: 17  ILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRL 76
                L      L +++ +G+ S+     G   +  +    + ++IA    + + +T R+
Sbjct: 15  TGILNLRSQLENLSQQLSSGRISNTYAGDGTGRSLAIGLRAQMSNIASYSDTMTNITTRI 74

Query: 77  STSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQY 136
           S +   L  M  I  ++ G  V       +  + P       D ++S V   N     +Y
Sbjct: 75  SVANLSLQRMATINSEVKGAAVSAGSTLDNTGQTPGQKTASLDFFDS-VDMLNAQVGDRY 133

Query: 137 LFSGINSSEKPLNGYF---TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQM 193
           LF G  +   P+         D  A     Q++    + +  +   G+ +  +   A  +
Sbjct: 134 LFGGRITDTAPVTAADKIMNGDGAAVAGLKQVISERHDADVGTNGMGRTIVSTGATATTV 193

Query: 194 T---DFIKQLED 202
               DF      
Sbjct: 194 QIGEDFAANPYA 205


>gi|74311644|ref|YP_310063.1| flagellar hook-associated protein FlgL [Shigella sonnei Ss046]
 gi|188494376|ref|ZP_03001646.1| flagellar hook-associated protein 3 [Escherichia coli 53638]
 gi|194438084|ref|ZP_03070177.1| flagellar hook-associated protein 3 [Escherichia coli 101-1]
 gi|218553661|ref|YP_002386574.1| flagellar hook-associated protein FlgL [Escherichia coli IAI1]
 gi|253773893|ref|YP_003036724.1| flagellar hook-associated protein FlgL [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161189|ref|YP_003044297.1| flagellar hook-associated protein FlgL [Escherichia coli B str.
           REL606]
 gi|300928365|ref|ZP_07143899.1| flagellar hook-associated protein 3 [Escherichia coli MS 187-1]
 gi|331652136|ref|ZP_08353155.1| flagellar hook-associated protein 3 [Escherichia coli M718]
 gi|73855121|gb|AAZ87828.1| flagellar hook-filament junction protein [Shigella sonnei Ss046]
 gi|188489575|gb|EDU64678.1| flagellar hook-associated protein 3 [Escherichia coli 53638]
 gi|194423020|gb|EDX39014.1| flagellar hook-associated protein 3 [Escherichia coli 101-1]
 gi|218360429|emb|CAQ97983.1| flagellar hook-filament junction protein [Escherichia coli IAI1]
 gi|253324937|gb|ACT29539.1| flagellar hook-associated protein 3 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973090|gb|ACT38761.1| flagellar hook-associated protein L [Escherichia coli B str.
           REL606]
 gi|253977304|gb|ACT42974.1| flagellar hook-associated protein L [Escherichia coli BL21(DE3)]
 gi|300463623|gb|EFK27116.1| flagellar hook-associated protein 3 [Escherichia coli MS 187-1]
 gi|313848603|emb|CAQ31604.2| flagellar biosynthesis; hook-filament junction protein, subunit of
           Flagellum [Escherichia coli BL21(DE3)]
 gi|323165593|gb|EFZ51380.1| flagellar hook-associated protein 3 [Shigella sonnei 53G]
 gi|323947615|gb|EGB43619.1| flagellar hook-associated protein 3 [Escherichia coli H120]
 gi|323962682|gb|EGB58260.1| flagellar hook protein 3 [Escherichia coli H489]
 gi|323973328|gb|EGB68517.1| flagellar hook protein 3 [Escherichia coli TA007]
 gi|331050414|gb|EGI22472.1| flagellar hook-associated protein 3 [Escherichia coli M718]
 gi|332342629|gb|AEE55963.1| flagellar hook-associated protein FlgL [Escherichia coli UMNK88]
          Length = 317

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 107/352 (30%), Gaps = 48/352 (13%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEANGDYVGGTESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D      N     D  I                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDGSASETNLFAMLDSAI------------------- 208

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                   A + T                 K    ++  L+ ++  RA LG     +   
Sbjct: 209 --------AALKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 261 DSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|322380051|ref|ZP_08054312.1| flagellar hook-associated protein FlgL [Helicobacter suis HS5]
 gi|321147520|gb|EFX42159.1| flagellar hook-associated protein FlgL [Helicobacter suis HS5]
          Length = 843

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 9/234 (3%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ S+ + ++N     L       + ++ +G  S+YG Q        L++  E N + + 
Sbjct: 3   ITDSNRYNQINYYQNALQNKLNTANNKIASGLKSEYGYQNSQVNNQNLKYGFETNTLDQA 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
                        +   L  +   +Q     L+               A  L       +
Sbjct: 63  HDVAKSAYTATLNTDKALGELSSTMQQFKVKLIQAASDVHSTTSRQAIALDLEKLKNHMI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLN---GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
             AN +  G+YLF G      P +    Y+  D                 +  +L  G+ 
Sbjct: 123 NVANTSIGGEYLFGGSKVDRPPFDAAGNYYGNDENLNALVGSHNLVPYNISGTNLFLGKD 182

Query: 183 LEVSSMNAQQMTDFIK-----QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEG 231
            +  +     +  F +      + D F+  +     +  A D  ++  I D + 
Sbjct: 183 ADKQTSIIANIKKFNQSKLHPDIMDSFNKTQNPQEVYITAQDT-LRDLIGDNDN 235



 Score = 37.4 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
           +  +   +  +I        S  N+      L+ + + I      ++G +    + + + 
Sbjct: 763 VDHLGDHIEKVIASNGAHSRSFSNVMRRNEVLKTQVDSIRA---DTVGTDVAQTYNKFAQ 819

Query: 334 LINKIEMSYMITTKLQKLSILNYL 357
           L N    S    +K+ ++S+ NYL
Sbjct: 820 LRNNYNASLASASKINQMSLTNYL 843


>gi|331657145|ref|ZP_08358107.1| flagellar hook-associated protein 3 [Escherichia coli TA206]
 gi|331055393|gb|EGI27402.1| flagellar hook-associated protein 3 [Escherichia coli TA206]
          Length = 317

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 108/348 (31%), Gaps = 40/348 (11%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
            AN TD  G+Y+F+G  +   P +    K      S  Q +                  V
Sbjct: 124 LANTTDGNGRYIFAGYKTESAPFSEADGKYEGGADSIKQQVDA------------SRSMV 171

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                 ++ D I        D      N     D  I                       
Sbjct: 172 IGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAI----------------------- 208

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
               A + T                 K    ++  L+ ++  RA LG     +       
Sbjct: 209 ----AALKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLGSLG 264

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++       +S  + V+ +   +        ++ SY + T +Q LS+
Sbjct: 265 SDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKVFTDMQGLSL 312


>gi|39936991|ref|NP_949267.1| hypothetical protein RPA3930 [Rhodopseudomonas palustris CGA009]
 gi|39650848|emb|CAE29371.1| unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 535

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 71/210 (33%), Gaps = 10/210 (4%)

Query: 153 TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN 212
               LA  S  +    F        +AG           Q+          ++ +    +
Sbjct: 331 ANGPLAAASAIKAGDDFFNNTPPLRVAGTAP--FGAATAQVAGTKANTIFWYNGEP---D 385

Query: 213 NWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF---LSKNLTDGARNVL 269
           + S+ +      +I D   +   A  + + +R  +    +        +   + G    L
Sbjct: 386 SASDPARGTAVAKIDDAITVQYGARADEQALRKQLQTVAVFAAVTTSATDPYSSGKIAAL 445

Query: 270 TKKMLSTVQ--QGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
            +++ + +    G   I   +A L  ++ +I            +  T +S   G+     
Sbjct: 446 NQRVAANLAVVPGQQSIQNMQAELAGAQASIKATANRQTQSKALAQTMLSSIEGINNDEV 505

Query: 328 HAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++  L   ++ SY  T+KL +LS++ +L
Sbjct: 506 ATKILALQTSLQASYETTSKLYQLSLVKFL 535



 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 7/192 (3%)

Query: 17  ILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRL 76
                L      L +++ +G+ S+     G   +  +    + ++IA    + + +T R+
Sbjct: 15  TGILNLRSQLENLSQQLSSGRISNTYAGDGTGRSLAIGLRAQMSNIASYSDTMTNITTRI 74

Query: 77  STSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQY 136
           S +   L  M  I  ++ G  V       +  + P       D ++S V   N     +Y
Sbjct: 75  SVANLSLQRMATINSEVKGAAVSAGSTLDNTGQTPGQKTASLDFFDS-VDMLNAQVGDRY 133

Query: 137 LFSGINSSEKPLNGYF---TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQM 193
           LF G  +   P+         D  A     Q++    + +  +   G+ +  +   A  +
Sbjct: 134 LFGGRITDTAPVTAADKIMNGDGAAVAGLKQVISERHDADVGTNGMGRTIVSTGATATTV 193

Query: 194 T---DFIKQLED 202
               DF      
Sbjct: 194 QIGEDFAANPYA 205


>gi|127512286|ref|YP_001093483.1| flagellar hook-associated protein FlgL [Shewanella loihica PV-4]
 gi|126637581|gb|ABO23224.1| flagellar hook-associated protein 3 [Shewanella loihica PV-4]
          Length = 396

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 131/396 (33%), Gaps = 46/396 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ +F +           + K+ +++ +G+  +           I    Q+   + + 
Sbjct: 3   ISTAQMFNQNINSVLNKQSATSKIIDQIASGKRVNTAGDDPVAAIGIDNLNQQNALVDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +    T RL+ +++ L + + +   +   ++  + G   +++  + A  L+ + E  V
Sbjct: 63  MKNIDYATNRLALTESKLGTAETLTGSVREQILRAVNGSLSDSERQMIADELKGTLEELV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFT------KDSLAKKSFDQMLQGFLEENSK--- 175
           + AN  D  G Y+F+G  +  +P             DS  +++                 
Sbjct: 123 SVANTKDESGNYMFAGYETGNQPFAFNAAGNVVYSGDSGVRQAIVASGVTLGTNVPGDQA 182

Query: 176 --SLLAGQHLEVSSMNAQQMTDF------IKQLEDKFSDDEYWANNWSNA----SDHNIK 223
             +  +G     ++  + Q  DF      I        D   +  N +N     S   + 
Sbjct: 183 FMNAPSGLGDFSANYLSTQTGDFRVLSAAISDPATYVDDTYSFTMNGANLEIRDSSATLV 242

Query: 224 YRIKD----------------------TEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
             + +                       +   ++    +     I     +  +    N 
Sbjct: 243 TTVPNFDAANPINFNGIEVKLDGQPAPGDTFSITPQSQVSVFDTINQAITLLEDPNKVNT 302

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
             G       +ML+ +  G++ +   R   G S K I         +  +  + +S    
Sbjct: 303 PQG--KAELAQMLNNIDSGVNQLSTARGEAGNSLKQIERYSSTHVEEKLVNSSALSMLED 360

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++  +A  +L      +     + +K+   ++ +Y+
Sbjct: 361 LDYASAITELEKQQLALNAVSSVFSKVGSTTLFDYI 396


>gi|315301956|ref|ZP_07872953.1| flagellar hook-associated protein 3 [Listeria ivanovii FSL F6-596]
 gi|313629674|gb|EFR97810.1| flagellar hook-associated protein 3 [Listeria ivanovii FSL F6-596]
          Length = 215

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 63/150 (42%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+     +      ++ +  K   ++ +G+  +   Q       IL +    + +   
Sbjct: 3   ISTNQQANTIINQLNNVSGNLAKYQLQVSSGKKYESMSQNPGATAQILSYNHVLSQLNRE 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+T++  LSSM   +  +   ++  + G +D N    +A  ++      +
Sbjct: 63  KTDVTEAKSLLNTAETSLSSMTTSMNRVNALVLQAINGTSDKNNMSQSAEEIKGLLGVLL 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
           + AN  D+G+Y+FSG ++S KP     T  
Sbjct: 123 SVANAEDDGRYVFSGSSTSVKPFTTDKTTG 152


>gi|256018660|ref|ZP_05432525.1| flagellar hook-associated protein FlgL [Shigella sp. D9]
 gi|260854566|ref|YP_003228457.1| flagellar hook-filament junction protein FlgL [Escherichia coli
           O26:H11 str. 11368]
 gi|260867446|ref|YP_003233848.1| flagellar hook-filament junction protein FlgL [Escherichia coli
           O111:H- str. 11128]
 gi|293433373|ref|ZP_06661801.1| flagellar hook-associated protein 3 [Escherichia coli B088]
 gi|300816785|ref|ZP_07097005.1| flagellar hook-associated protein 3 [Escherichia coli MS 107-1]
 gi|332279729|ref|ZP_08392142.1| flagellar hook-associated protein FlgL [Shigella sp. D9]
 gi|257753215|dbj|BAI24717.1| flagellar hook-filament junction protein FlgL [Escherichia coli
           O26:H11 str. 11368]
 gi|257763802|dbj|BAI35297.1| flagellar hook-filament junction protein FlgL [Escherichia coli
           O111:H- str. 11128]
 gi|291324192|gb|EFE63614.1| flagellar hook-associated protein 3 [Escherichia coli B088]
 gi|300530559|gb|EFK51621.1| flagellar hook-associated protein 3 [Escherichia coli MS 107-1]
 gi|323156890|gb|EFZ43024.1| flagellar hook-associated protein 3 [Escherichia coli EPECa14]
 gi|323175238|gb|EFZ60851.1| flagellar hook-associated protein 3 [Escherichia coli LT-68]
 gi|323175685|gb|EFZ61279.1| flagellar hook-associated protein 3 [Escherichia coli 1180]
 gi|323185794|gb|EFZ71155.1| flagellar hook-associated protein 3 [Escherichia coli 1357]
 gi|324117346|gb|EGC11253.1| flagellar hook protein 3 [Escherichia coli E1167]
 gi|332102081|gb|EGJ05427.1| flagellar hook-associated protein FlgL [Shigella sp. D9]
          Length = 317

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 112/352 (31%), Gaps = 48/352 (13%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
            AN TD  G+Y+F+G  +   P +    K     +S  Q +                  V
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIRQQVDA------------SRSMV 171

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                 ++ D I        D         +AS+ N+                       
Sbjct: 172 IGHTGDKIFDSITSNAVAEPDG--------SASETNL----------------------- 200

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG----LSGIIEQRAVLGISEKNINEE 301
              +        +      A   +    L    +G    L+ ++  RA LG     +   
Sbjct: 201 FAMLDSAIAALKTPVADSEADKEIAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 261 DSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|299822282|ref|ZP_07054168.1| flagellar hook-associated protein 3 [Listeria grayi DSM 20601]
 gi|299815811|gb|EFI83049.1| flagellar hook-associated protein 3 [Listeria grayi DSM 20601]
          Length = 291

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 60/144 (41%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+T+     +       N    K   ++ TG+  +   +  A  T +L +    N +   
Sbjct: 3   IATNQQTNTIINQINNANVLMGKYQTQVSTGKRYETMSENPAATTQVLSYNHILNQLNRE 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               S     L+++   LSSM   +  +   ++  L G TD       A  ++   +S V
Sbjct: 63  QKDVSDAKSLLTSADTSLSSMNDAMSRINAIVLQSLNGTTDEKNMNQAAEEVKGLLQSLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLN 149
           +  N  D+G+Y+FSG +++ KP  
Sbjct: 123 SLGNTDDDGRYIFSGSSTNTKPFT 146


>gi|322378700|ref|ZP_08053132.1| flagellar hook-associated protein FlgL [Helicobacter suis HS1]
 gi|321148875|gb|EFX43343.1| flagellar hook-associated protein FlgL [Helicobacter suis HS1]
          Length = 843

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 9/234 (3%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ S+ + ++N     L       + ++ +G  S+YG Q        L++  E N + + 
Sbjct: 3   ITDSNRYNQINYYQNALQNKLNTANNKIASGLKSEYGYQNSQVNNQNLKYGFETNTLDQA 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
                        +   L  +   +Q     L+               A  L       +
Sbjct: 63  HDVAKSAYTATLNTDKALGELSSTMQQFKVKLIQAASDVHSTTSRQAIALDLEKLKNHMI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLN---GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
             AN +  G+YLF G      P +    Y+  D                 +  +L  G+ 
Sbjct: 123 NVANTSIGGEYLFGGSKVDRPPFDAAGNYYGNDENLNALVGSHNLVPYNISGTNLFLGKD 182

Query: 183 LEVSSMNAQQMTDFIK-----QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEG 231
            +  +     +  F +      + D F+  +     +  A D  ++  I D + 
Sbjct: 183 ADKQTSIIANIKKFNQSKLHPDIMDSFNKTQNPQEVYITAQDT-LRDLIGDNDN 235



 Score = 37.4 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
           +  +   +  +I        S  N+      L+ + + I      ++G +    + + + 
Sbjct: 763 VDHLGDHIEKVIASNGAHSRSFSNVMRRNEVLKTQVDSIRA---DTVGTDVAQTYNKFAQ 819

Query: 334 LINKIEMSYMITTKLQKLSILNYL 357
           L N    S    +K+ ++S+ NYL
Sbjct: 820 LRNNYNASLASASKINQMSLTNYL 843


>gi|89075503|ref|ZP_01161914.1| flagellar hook-associated protein [Photobacterium sp. SKA34]
 gi|89048775|gb|EAR54346.1| flagellar hook-associated protein [Photobacterium sp. SKA34]
          Length = 411

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/410 (11%), Positives = 135/410 (32%), Gaps = 61/410 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEW---EQEKNHI 62
           +ST+S ++ +         +  + + ++ TG+  +     G    S +      Q+   I
Sbjct: 5   VSTASQYQSLTSNLMRKQGEVNESNNQLSTGKRVE---TAGDDPVSSVTIQNYRQQLTQI 61

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            +   S ++   RL   ++ ++ ++  +      ++ ++ G   +N        L    +
Sbjct: 62  DQYKSSITMANNRLGVMESSIAGVEDNLDATKQKVLRMINGAMASNDRTAFKDELTSLRD 121

Query: 123 SFVTFANMTD-EGQYLFSGINSSEKPLN-------GYFTKDSLAKKSFD-------QMLQ 167
             +  AN  D  G Y+F+G     +P          Y           D        +  
Sbjct: 122 GLLELANSRDESGNYVFAGNQMDTQPFVKGTDDKMNYQGDSQSRYAQIDKSVEVKTSLPG 181

Query: 168 GFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNA--------SD 219
             L  +  +       + S +++      +      F+  +     +S A          
Sbjct: 182 DQLFTSIPNPYGDFRPDFSDLSSGSKLHVLSATTSDFTKAQPIDIAFSEALVTQPDGSEK 241

Query: 220 HNIKYRIKDT--EGIDVSANVNMRGIRDIMFVAVIGT----------------------- 254
             ++Y++     E +        +GI+         +                       
Sbjct: 242 TVMQYKLSLDGKEVVADQDYDPEKGIQYTAANGSSVSITLDDVEVGDKLTLNPAQKINIF 301

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGI-------IEQRAVLGISEKNINEERVFLQN 307
           + L   + +  +   +    +T+Q+ +  I        ++R+ +G   + +  ++    +
Sbjct: 302 DSLQDAIDNAEKPTSSAAAEATLQRVIDDIDGSFLHVSQRRSEVGTIMQQVERQQEQHLD 361

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +++  S    ++   A  +++  +  ++ S    +K ++LS+ NYL
Sbjct: 362 FELTLNSAQSGLEDLDYSKAIMEMNQQMMALQASQSAFSKTKQLSLFNYL 411


>gi|304407694|ref|ZP_07389345.1| flagellar hook-associated protein 3 [Paenibacillus curdlanolyticus
           YK9]
 gi|304343177|gb|EFM09020.1| flagellar hook-associated protein 3 [Paenibacillus curdlanolyticus
           YK9]
          Length = 302

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 99/332 (29%), Gaps = 55/332 (16%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
                 ++ TG+  +        +T  L +  E +   +   + +    +L  +   +  
Sbjct: 25  MQGQQNDLSTGRKLNKPSDDPVGITYSLRYRSELSMNEQFDKNIAQAKSQLEHTDTVVGQ 84

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           +  IVQ +    V  L G    +     A  +   YE  +T  N    G+Y+F+G  + +
Sbjct: 85  LNDIVQRVQELSVQALNGTNPQSALDAIAVEVSQIYEQAITIGNDQLNGKYIFNGQKTDK 144

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
            P +      + A++  DQ++Q          +  +  ++   N          L     
Sbjct: 145 IPFDAATAGTNAAEEPDDQLIQVRFAAGVTVPINVKAEDLFGSNGDA-----DNLFKVLK 199

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGA 265
           D +                                           +       NL    
Sbjct: 200 DIKN-----------------------------------------ALTPAGNMANLQTAY 218

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
           +N         +      II  R+ +G     ++     LQ+ N  + +  SK+   +  
Sbjct: 219 QN---------LSTRYDKIINLRSEVGARVNRVDLIDQRLQDLNFNLTSLQSKTEDTDMA 269

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               + +      + S     K+   ++++YL
Sbjct: 270 ETIMKYNQEEAVYQASLSTGAKIISPTLIDYL 301


>gi|86750924|ref|YP_487420.1| hypothetical protein RPB_3815 [Rhodopseudomonas palustris HaA2]
 gi|86573952|gb|ABD08509.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 535

 Score = 60.9 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 62/190 (32%), Gaps = 7/190 (3%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
              L      +  ++  G+ +     +G      +    +  +IA    + + +  R+S 
Sbjct: 17  ILNLRSQIEDMTAQLANGRVATNYAGMGTGRGLAIGLRAQVANIASYSDTMTNINTRISV 76

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +   L  +  I  ++ G          +  + P       D ++S V   N     +YLF
Sbjct: 77  ANLALQRLNDIGSEVKGAAASAGSTLDNTGQTPGQKTASLDFFDS-VDMLNSQTSDRYLF 135

Query: 139 SGINSSEKPLNGYF---TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT- 194
           SG  +   P+         +  A     Q+++  LE +  +   G+ +  +      +  
Sbjct: 136 SGRTTDTAPVTAADQIMDGNGAAIAGLKQVIRERLEADLGTTGMGRTIVSAGATPTSVQI 195

Query: 195 --DFIKQLED 202
             DF      
Sbjct: 196 GEDFAADPYA 205



 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 53/148 (35%), Gaps = 5/148 (3%)

Query: 215 SNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARN---VLTK 271
           S+ +      R+ D   +      + + +R  +    +     +        N    L +
Sbjct: 388 SDPARGTAVGRVDDAITVQYGIRADEQALRKQLQTVAVFAAVTTSATDPNGSNKLAALNQ 447

Query: 272 KMLSTVQQ--GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
           ++ + +    G   I   +A L  ++  +            +  T +    G+       
Sbjct: 448 RVAANLATVPGQQTIQNIQADLAGAQAAMKSTADRQTQTKALAQTMLDSIEGINNDEVAT 507

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++  L   ++ SY +T++L ++S++ +L
Sbjct: 508 KILALQTSLQASYQLTSQLYQMSLVKFL 535


>gi|124516724|gb|EAY58232.1| Flagellar hook-associated protein FlgL [Leptospirillum rubarum]
          Length = 312

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 103/345 (29%), Gaps = 60/345 (17%)

Query: 6   ISTSSIFERMNILTKELNK--DSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           I  + +     ++        +   +  ++ +G+  +       R+   L   +  +   
Sbjct: 2   IRVTGLMTNREVIASHDQAIDNLYDVDRQISSGKQFETPGDAPGRMGESLRINRNLSVTR 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             + +      RL   ++ L  +  ++    G  + +           + A  L  + E 
Sbjct: 62  RIIENAREGANRLKLMESILDQVGTLLIRAKGLAIRMANDTMTAEDRRVGAQELERTLEQ 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF------DQMLQGFLEENSKSL 177
            V+ AN     QYLFSG N +  P      K +    ++      + + QGF     ++ 
Sbjct: 122 VVSLANTKAGEQYLFSGTNVTRPPFLFTDPKLNPGSVAYLGNHRSETVQQGFSPRQREAG 181

Query: 178 LAGQHLEVSSMNAQQMTD-FIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSA 236
           L         +      D F  +                                     
Sbjct: 182 LMPVTEAGDRILGDSAADPFGNKPLPV--------------------------------- 208

Query: 237 NVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEK 296
                 +R  +             L++        + +  + + +  + E+ AVLG  E+
Sbjct: 209 ------MRRFLLGL----------LSNDQPQ--ITRSIDELDRTIHSVTERAAVLGTRER 250

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
            I      L+       T  S++  V+   A ++L+   N + +S
Sbjct: 251 AIRTTVDRLEKYTISQKTLKSQNEDVDVPKAVSKLALNQNFLALS 295


>gi|311694368|gb|ADP97241.1| flagellar hook-associated protein FlgL [marine bacterium HP15]
          Length = 407

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS+  IF       +ELN       +++ TGQ  +           IL+ +QE + +   
Sbjct: 4   ISSQQIFSGGINRLQELNTSLNNTQQQISTGQRVNKPSDDPVAAARILKLDQELSRVETY 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +  L   RL   +  LSS   ++Q +    V    G    N     +  L +      
Sbjct: 64  QRNVDLADNRLKQEENALSSSIDVIQRIRELTVQAGNGSLSANDRRSISSELEERLGQLA 123

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
             AN  D  G+Y+FSG   S K  
Sbjct: 124 NIANTRDASGEYIFSGFQGSVKAF 147


>gi|220932549|ref|YP_002509457.1| flagellar hook-associated protein 3 [Halothermothrix orenii H 168]
 gi|219993859|gb|ACL70462.1| flagellar hook-associated protein 3 [Halothermothrix orenii H 168]
          Length = 301

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/352 (9%), Positives = 107/352 (30%), Gaps = 54/352 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +   +    +   K   K ++++ TG+      +        +          + 
Sbjct: 3   ITNNIMVTNLKNYLQRGMKALDKYNKKLATGKEFTLPEEDPIATQRSMILHSALKANKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L  +++ L  +  ++Q               + +    A  + +  +  V
Sbjct: 63  QRNVDHAQDWLLNTESALHDVNDVLQRAYQLAEHGANDTVSDEEREAIAQEIEELNQHLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             AN    G+Y+FSG  +  K                                      V
Sbjct: 123 QLANTKVAGKYIFSGSATDTKAY------------------------------------V 146

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           ++ N               S  + +        + ++   I     +D + +        
Sbjct: 147 ANYN---------------SGTDTYTFTHYQGDNVSLTAEISPGVPVDYNISG-EDVFGP 190

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
              +  I      +NL +  R+ +  + +  ++  +  I++  +++G     ++  +  L
Sbjct: 191 NGELFNILENL-RQNLKNDNRDAIETR-IGELEAEMDNIMKHFSIIGAKTNRLDLSKNRL 248

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++   ++  IS++   +       L    N    +     ++ + S+++++
Sbjct: 249 SSEELNLNQLISRNEDADMAETIMNLKMQENVFRATLASGARIIQPSLVDFI 300


>gi|253575864|ref|ZP_04853198.1| flagellar hook-associated protein 3 [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251844658|gb|EES72672.1| flagellar hook-associated protein 3 [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 296

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 101/339 (29%), Gaps = 59/339 (17%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            + +N       +++ TGQ           V   + ++ +     E L +    T+ L T
Sbjct: 16  LRNINSSLTTGQQQLATGQKISKPSDDPIGVGYQMRYDTDLARSEEFLLNAQTGTEILKT 75

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
             +       +++      +    G  DN +    A  +R  YE  VT  N T  G+YLF
Sbjct: 76  MDSLFQQASDVLKRARTLALQGANGTLDNQQRRTIASEIRQLYEQMVTIGNSTFNGRYLF 135

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
           +G  + + P    +T    A  + D              ++       S+          
Sbjct: 136 NGQKTDQAP----YTVGGAASATTD-------PGLFYLNVSPSVKIPVSITG-------- 176

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
                                          E +  +AN      + +  +A        
Sbjct: 177 -------------------------------EVVFGNANTPDNVFQVLNDLATALEGDDV 205

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             + D          ++ +   +  +    A +G      +     +Q+    +    S 
Sbjct: 206 DGIQD---------SVNRIDASVDRLNVSWAEVGARMNRFDLMINRIQDDQVSLREQRSN 256

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              V+   A   L    N ++ +     ++ ++S++++L
Sbjct: 257 VADVDFAEAITDLKMKENVLQAALSTGARIMQISLVDFL 295


>gi|227876729|ref|ZP_03994838.1| hypothetical protein HMPREF0577_2139 [Mobiluncus mulieris ATCC
           35243]
 gi|306817676|ref|ZP_07451418.1| possible flagellar hook-associated protein 3 [Mobiluncus mulieris
           ATCC 35239]
 gi|227842626|gb|EEJ52826.1| hypothetical protein HMPREF0577_2139 [Mobiluncus mulieris ATCC
           35243]
 gi|304649490|gb|EFM46773.1| possible flagellar hook-associated protein 3 [Mobiluncus mulieris
           ATCC 35239]
          Length = 328

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 121/337 (35%), Gaps = 27/337 (8%)

Query: 24  KDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83
           +     +E+M +G+   +     A   S +   +E     +   +       + T+ + +
Sbjct: 15  QRLADANEKMASGKRMKFASDDPASSVSSMRLRKELAATEQYKRNIDDAQSWMQTADSAM 74

Query: 84  SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS 143
            ++ K+       L+  + G          A  LR + ++ +T AN T  G+ +F+G   
Sbjct: 75  DTVSKLYLHSKTKLINSVSGAMGKESLHALAADLRQNAQAIMTQANKTYLGRTVFAG--- 131

Query: 144 SEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDK 203
                      +S     F         +++   L     E  ++ A  +   I      
Sbjct: 132 -----------NSDKGVVFKT------GKDANGDLQFMQTEADNVTAMPVDRRINAYTTL 174

Query: 204 FSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV---NMRGIRDIMFVAVIGTEFLSKN 260
            ++ +     +   +   +   I D  G+  S  V   N   + +++  A    E     
Sbjct: 175 PANVDG-NKLFGTGTIKYVPGPIDDETGLPTSFEVDDGNNPSVMNLLVEAARLMETGDLG 233

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
              G + +  ++ LS  ++    +   ++ LG   K + E +  + +    + T IS   
Sbjct: 234 GEKGEKILAIQRELSRREKL---LHTNQSDLGARHKQVLEAQDNVVSDIQAVKTQISGVE 290

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            V+   A  ++S      + +   T+++ + S+L+YL
Sbjct: 291 DVDIQAATIEMSLAHMAYQAALGSTSRVVQPSLLDYL 327


>gi|157155540|ref|YP_001462317.1| flagellar hook-associated protein FlgL [Escherichia coli E24377A]
 gi|300922609|ref|ZP_07138709.1| flagellar hook-associated protein 3 [Escherichia coli MS 182-1]
 gi|301328547|ref|ZP_07221608.1| flagellar hook-associated protein 3 [Escherichia coli MS 78-1]
 gi|157077570|gb|ABV17278.1| flagellar hook-associated protein 3 [Escherichia coli E24377A]
 gi|300421086|gb|EFK04397.1| flagellar hook-associated protein 3 [Escherichia coli MS 182-1]
 gi|300844939|gb|EFK72699.1| flagellar hook-associated protein 3 [Escherichia coli MS 78-1]
          Length = 317

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 112/352 (31%), Gaps = 48/352 (13%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
            AN TD  G+Y+F+G  +   P +    K     +S  Q +                  V
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIRQQVDA------------SRSMV 171

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                 ++ D I        D         +AS+ N+                       
Sbjct: 172 IGHTGDKIFDSITSNAVAEPDG--------SASETNL----------------------- 200

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG----LSGIIEQRAVLGISEKNINEE 301
              +        +      A   +    L    +G    L+ ++  RA LG     +   
Sbjct: 201 FAMLDSAIAALKTPVADSEADKEIAAAALDKTNRGLKNSLNNVLTVRAGLGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 261 DSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|315452962|ref|YP_004073232.1| flagellar hook-associated protein 3 [Helicobacter felis ATCC 49179]
 gi|315132014|emb|CBY82642.1| flagellar hook-associated protein 3 [Helicobacter felis ATCC 49179]
          Length = 843

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 48/145 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS S  + +MN     L       + ++ +G     G Q        L++  E+N + + 
Sbjct: 3   ISDSGRYNQMNYYQNTLQNKLNTANTKIASGLKIQNGYQDSNINDQNLKYGFEENTLDQN 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           +            +   LS +   ++     L+        N      A  L       +
Sbjct: 63  IDVAKSAHTSTLNTDKALSELSSTMEQFKTKLIQAASDVHSNTSRQAIALDLEKLKAHMI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNG 150
             AN +   +YLF+G     KP + 
Sbjct: 123 NVANTSIGDEYLFAGSKVDRKPFDS 147


>gi|113969613|ref|YP_733406.1| flagellar hook-associated protein FlgL [Shewanella sp. MR-4]
 gi|113884297|gb|ABI38349.1| flagellar hook-associated protein 3 [Shewanella sp. MR-4]
          Length = 402

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 65/408 (15%), Positives = 137/408 (33%), Gaps = 64/408 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEWEQEKN 60
           +S++ +F +      +    + K+ +++ +G+       D    LG          Q   
Sbjct: 3   LSSAQLFNQSISSVLQKQTATSKILDQLSSGKKVNTSGDDPVAALGID-----NLNQRNA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + + +    T  L  +++ L     ++  M   ++    G   + +    A  LR S
Sbjct: 58  LVDQFMKNIDYATNHLQQTESQLGQADTLISSMKDLMLQGSNGSQTSEERQTIADDLRKS 117

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
            +  +T AN  D  G YLF+G  +   P    F  +       D  +   +  +   L  
Sbjct: 118 LDQLLTIANTKDESGNYLFAGNKTDTLPFQ--FDANGKIVYQGDSGVHSAIIASGIQLNT 175

Query: 180 GQHLEVSSM-NAQQMTDF-------------------------IKQLEDKFSDDEYWANN 213
               + + + +   M D+                         +   +  F DD     N
Sbjct: 176 NVAGDTAFIKSPNAMGDYSVNYLPSQQGEFSVTSAKLDGVTPSLSDYKINFLDDGAGGIN 235

Query: 214 WSNASDHNIKYRIKDTEGIDVSANVNMRGIR------------------------DIMFV 249
                       I      D SA++N  G++                        D    
Sbjct: 236 VEVTDTATPANVISAAAPFDPSASINFDGVKLSIEGEPKIGDSFTLHQEAEVSIFDTFSK 295

Query: 250 AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
           A+   E   +  T   ++ L  ++L+ VQ G+  I +Q+ + G S K + +      ++ 
Sbjct: 296 AIDLFENGEQVQTPSGQSELA-QLLNNVQSGVKQISQQQGLAGNSLKVLEKYTDKHTDEK 354

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            I  + +SK   V+  TA  +       +     + +K+  +S+ +Y+
Sbjct: 355 LINTSALSKLEDVDYATAITEFEKQQLALNAVSSVFSKVGSVSLFDYI 402


>gi|299068739|emb|CBJ39978.1| flagellar hook-filament junction protein protein 3 [Ralstonia
           solanacearum CMR15]
          Length = 316

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 121/353 (34%), Gaps = 42/353 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+  F       +    + VKL +++ +G +        A +  +L+ +Q ++   + 
Sbjct: 3   VSTAQFFSASTSSMQTTQSNLVKLQQQISSGIALTAAGDNPAAMGQVLQLQQSQDTSDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      RL+T  + LS +   +Q      +        +++       ++  Y+  +
Sbjct: 63  QVNRDATYARLNTVSSALSDVISTLQQGKQSTIAANTTLLTDSQRVGILAQVKQQYQQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  G  LF+G N +  P             S    +Q        ++   Q + 
Sbjct: 123 SSANQRDASGVALFAGANGTTAPF-----------VSSGGSVQYVGSGQPPTVQVAQDIS 171

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           +S+                            + S  ++  R+ +++    +AN N    +
Sbjct: 172 MSN----------------------------SVSGDSVFVRVPNSDA--SNANANQSVFK 201

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
               +    ++ ++ +    A     +     +       ++ +  +G  +  I      
Sbjct: 202 TYENLITALSKPITTSADVTAIQTAVQTAQGNLDSAYQVALQAQVTVGTQQAQITTLNSS 261

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             N    +   ISK   V+  +A +Q S     ++ +    + +Q LS+  Y+
Sbjct: 262 GSNFGEQLKEQISKLQSVDYTSAISQFSQQQVSLQAAQKTFSAMQGLSLFQYI 314


>gi|157146219|ref|YP_001453538.1| flagellar hook-associated protein FlgL [Citrobacter koseri ATCC
           BAA-895]
 gi|157083424|gb|ABV13102.1| hypothetical protein CKO_01976 [Citrobacter koseri ATCC BAA-895]
          Length = 317

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 108/357 (30%), Gaps = 56/357 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++++          + +K  E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVINPSDDPIAASQAIVLAQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  +  LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEENVLSQVTAAIQTAQEKIVYAANGTLSDDDRASLASDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             AN TD  G+Y+F+G  + + P +     Y        +  D      +          
Sbjct: 123 NLANSTDGNGRYIFAGYKTEKAPFDQANGDYSGGTENITQQVDASRTMVIGH-------- 174

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                      Q                             I  RI      +   + + 
Sbjct: 175 --------TGDQ-----------------------------IFNRITSNAVPEPDNSASE 197

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL----SGIIEQRAVLGISEK 296
             +     +        +    D  +       +    +GL    + ++  RA LG    
Sbjct: 198 TSL--FAMLDTAIAALKTPVADDDVKKAEAAAAIDKTNRGLKNSLNNVLTVRAELGTQLS 255

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++        +       +S  + V+ + A +        ++ SY   + +Q +S+
Sbjct: 256 ELDSLDSLGSERALGQAQQMSDLVDVDWNAAISSYVMQQAALQASYKAFSDMQGMSL 312


>gi|260597452|ref|YP_003210023.1| flagellar hook-associated protein FlgL [Cronobacter turicensis
           z3032]
 gi|260216629|emb|CBA29930.1| Flagellar hook-associated protein 3 [Cronobacter turicensis z3032]
          Length = 320

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 109/349 (31%), Gaps = 37/349 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++++      +     +K  E+M TG+  +            +   Q +    + 
Sbjct: 3   ISTQMMYQQNMRGITDSQSTWLKYGEQMSTGKRVNRPSDDPIAAAQAVVLSQAQAQNEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S   + LS +  ++      +V    G   +      A  L+   +  +
Sbjct: 63  TQARTFATQKVSLESSVLSQVTSVITSAQEKIVYANNGTLSDTDRASVATDLQGMRDQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  +   P +      +    +++        EN    +      
Sbjct: 123 NLANSTDGNGRYIFAGYKTDAAPFS-----GTPGNVTYNGG-----TENITQQVDSARTM 172

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V       + D I        D                       + +D +       + 
Sbjct: 173 VIGHTGNLVFDSITSNAKPEPDGSP--------------SETNLFKMLDSAIAALKTPM- 217

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                     E   +    G  + +TK     +   L  +    A +G   K +      
Sbjct: 218 ----------EGADETTQQGLLDAITKTSRG-LSNSLDNVGTVLAEVGTQHKELENLDQL 266

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
              +       +S  + V+ ++A +        ++ SY   + +Q +S+
Sbjct: 267 GAERTLGQTAQMSNLVDVDWNSAISSYVMQQAALQASYKAFSDMQGMSL 315


>gi|320179216|gb|EFW54174.1| Flagellar hook-associated protein FlgL [Shigella boydii ATCC 9905]
          Length = 317

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 106/352 (30%), Gaps = 48/352 (13%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++        ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLPTDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEANGDYVGGTESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D      N     D  I                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDGSASETNLFAMLDSAI------------------- 208

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                   A + T                 K    ++  L+ ++  RA LG     +   
Sbjct: 209 --------AALKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 261 DSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|239996707|ref|ZP_04717231.1| flagellar hook-associated protein FlgL [Alteromonas macleodii ATCC
           27126]
          Length = 407

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 52/408 (12%), Positives = 114/408 (27%), Gaps = 59/408 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ I+++      +   D  K  E++ +G+              +L   +E + + + 
Sbjct: 3   ISTNQIYDQNMRSIMQNQGDLAKTQEQLASGKRIITPSDDPVGAAKVLRLTEEIDELTQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +N LVT  L   +A L+++   V      ++    G  D+         L        
Sbjct: 63  QRNNDLVTGSLEQQEAVLTNITNSVNRARTLVIQAGSGALDSPDRKAIGAELEQIKLEIF 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH-- 182
              N  D  G YL++G  S  +      T    A          F++ ++ S +      
Sbjct: 123 DLMNTQDAEGSYLYAGFQSGNQAFEYNPTATDKAITFTGDAGVSFVQLSNSSKIQSTSNG 182

Query: 183 -----------------------LEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASD 219
                                   E S         F  +  D  +           AS 
Sbjct: 183 YEVFENVLSRYKFSTDPASTAVVSEASVKQQGTFDTFFDKNYDPVNTGNNDYRINFLASG 242

Query: 220 HNIKYRIKDTEGIDVSANVNMRGI--------------------------RDIMFVA-VI 252
                       ++  A  + +                            + +      I
Sbjct: 243 QAELVNQGTGVIVESVAYTSGQPFTIKGMEFEATAVPGDSIDLSLDAPEKKSMAQTLHEI 302

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI---SEKNINEERVFLQNKN 309
                  ++            L  +  GL  +  + A +G      ++I E  + ++   
Sbjct: 303 QAVLNDSSIDSFELQESISDALVGLDNGLEKLSLEHASIGSRLNIAESIYESNLDMEIAA 362

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               + I  +   +   A  + +     +  +     ++ +LS+ N++
Sbjct: 363 KASRSSIQDT---DYAEASTEFAKQETALSAALATFPQVTELSLFNFI 407


>gi|114777913|ref|ZP_01452827.1| flagellar hook-associated protein [Mariprofundus ferrooxydans PV-1]
 gi|114551700|gb|EAU54252.1| flagellar hook-associated protein [Mariprofundus ferrooxydans PV-1]
          Length = 293

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 113/352 (32%), Gaps = 62/352 (17%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+++ ++  +    K+      + + ++ +G       Q G    + L+    +  +   
Sbjct: 3   ITSAQMYNTLLTGVKQQQDILNQGNAQIASGTKFQTPDQAGIAYKTSLDIRHAQVGLQGD 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           L S +    RL+ S   L+ M  I++      V +    T   +    A           
Sbjct: 63  LDSITTADSRLANSMTMLNDMTNIMKRAQTVAVQMATASTSATERLSAAQEATQLLNQAF 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             AN   +GQ LF+G  + +                       F+ +   +++   + + 
Sbjct: 123 NDANQQWQGQSLFAGTATDKA---------------------AFVTDTLGNIVYNGNAQD 161

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
            ++        I  +     D+  +A  +S   D     +  DT G+  +          
Sbjct: 162 RTIVTSDGQQVITNIRG---DNPAFAAAFSALQDFKTALQNNDTAGVQNAVGA------- 211

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
                                          +     G+I   + +G     +   +  +
Sbjct: 212 -------------------------------LTSASDGVINMTSDVGARLNGVRLNKTAI 240

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           Q++   + T ++ +  V+  +  A++      ++ +Y    +++ L++ N+L
Sbjct: 241 QDRQLNLATQLNTNEAVDIPSVVARMQQSSIALQAAYSQINQIKSLTLTNFL 292


>gi|320186969|gb|EFW61682.1| Flagellar hook-associated protein FlgL [Shigella flexneri CDC
           796-83]
          Length = 317

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 110/356 (30%), Gaps = 56/356 (15%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +   +++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFAIQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNG----YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D         +AS+ N+                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDG--------SASETNL------------------- 200

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG----LSGIIEQRAVLGISEKN 297
                  +        +      A   +    L    +G    L+ ++  RA LG     
Sbjct: 201 ----FAMLDSAIAALKTPVADSEADKEIAAAALDKTNRGLKNSLNNVLAVRAELGTQLNE 256

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +        ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 257 LESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|313200556|ref|YP_004039214.1| flagellar hook-associated protein 3 [Methylovorus sp. MP688]
 gi|312439872|gb|ADQ83978.1| flagellar hook-associated protein 3 [Methylovorus sp. MP688]
          Length = 301

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 110/353 (31%), Gaps = 55/353 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST++I++        L  +  KL +++ +G+               L   Q ++  ++ 
Sbjct: 3   ISTNTIYQTGINKISALQSEQYKLQQQVSSGKRILTPADDPVGAARALTISQAQSINSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++ +  L++ ++ L+S+  ++      LV        + +    A  L +  +  +
Sbjct: 63  ADNRAMASFNLNSIESTLTSVTDLMVSAKSTLVGAGNAVLSSEEKNYIATQLSNDLQELI 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G YLF G                  K +                     ++
Sbjct: 123 GLANSKDGNGNYLFGGF-----------------KNTTQPYTATTTGATYNGDNGQMDMQ 165

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           VS                            S   +    ++ +  +              
Sbjct: 166 VSD-----------------------TRRMSTTENGPDVFQAEGNDV------------- 189

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
               ++ I     +   T  A N       +++ +GL  ++  RA  G   K I+     
Sbjct: 190 -FATLSNIVDLLSNPATTSAALNTALASANTSLDKGLDNVLTVRASTGSKLKEIDALDNN 248

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++N      +S    ++   A + ++     +E +     +L  L++  Y+
Sbjct: 249 GDDRNLQYKAELSDIQDLDYAQALSDITKQKTILEAAQQSYVQLSGLTLFKYI 301


>gi|298345980|ref|YP_003718667.1| flagellar hook-associated protein 3 [Mobiluncus curtisii ATCC
           43063]
 gi|304390262|ref|ZP_07372216.1| flagellar hook-associated protein 3 [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298236041|gb|ADI67173.1| flagellar hook-associated protein 3 [Mobiluncus curtisii ATCC
           43063]
 gi|304326744|gb|EFL93988.1| flagellar hook-associated protein 3 [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 327

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 125/356 (35%), Gaps = 30/356 (8%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
             T ++TS +        +         ++++ +G+   +     A   S +   +E   
Sbjct: 1   MITRMTTSMMAGTTLSTIQRNFNRLADANKKLSSGKRMSFASDDPASSVSSMRLRKELAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   + S     L+TS A + S+ +   +    L+  ++G   +      A  LR   
Sbjct: 61  TEQYKRNISDANSWLATSDAAMQSVAERYTEARTLLINSIDGALGSQSQGALAAQLRKVA 120

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           ES ++ AN T  G+ +F+G NS +                   + +   + +    LA +
Sbjct: 121 ESIMSQANATYLGRTVFAG-NSDKG-----------------LVFKTGSDGHDTIFLAAE 162

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
             E+++    +  D    ++     ++ +        D          +   +  + N  
Sbjct: 163 KDEITAKTVDRRIDADTTVQANLDGNKLFGTGTIKWDD---------NDKTKLDTDNNPS 213

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
            +  ++  A I     S     G      + +   + +  + + E ++ +G   K + E 
Sbjct: 214 VMNLLVEAAKI---LESPTGPSGDNRSKIESIQKELTERFAKLQEAQSAVGARHKQVLEA 270

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  +      +   IS    ++  +A   +S      + S   T ++ + ++L+YL
Sbjct: 271 QENVIFDLEQVKGQISSVEDIDILSATIDMSLASMAYQSSLGSTQRVVQPTLLDYL 326


>gi|15616182|ref|NP_244487.1| flagellar hook-associated protein 3 (HAP3) [Bacillus halodurans
           C-125]
 gi|10176244|dbj|BAB07339.1| flagellar hook-associated protein 3 (HAP3) [Bacillus halodurans
           C-125]
          Length = 395

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/389 (10%), Positives = 111/389 (28%), Gaps = 49/389 (12%)

Query: 13  ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV 72
             +     +      +L +++ TG+      Q        + +  +   + +   +   V
Sbjct: 11  NSLR-HISQGYMRLGELQDQLSTGKRITRASQDPVVAMKGIRYRTQVAEVEQFKRNLREV 69

Query: 73  TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
              + T+ A L      +  +            +  +    A  +R  YE   + AN  +
Sbjct: 70  YNWMDTADAALGEATDALARIHELATQAANDTYEETQRANIAKEIRQLYEHLQSIANTKN 129

Query: 133 EGQYLFSGINSSEKPLNG-------------------------------YFTKDSLAKKS 161
            G+Y+F+G N++  P+                                 Y  +++     
Sbjct: 130 SGKYIFNGTNTTNPPIVAPERMDLGFAHLLEPGTDLQTVEIVYDGQTYHYVGENADGHLV 189

Query: 162 FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNW------- 214
           F  + Q       ++     + +   +        I   +   +       N        
Sbjct: 190 FQDVRQMNSLPFDETDSDEFNEKAFQLVIDPDLGRITSSQPNVNTGAAETKNVRLNDVVV 249

Query: 215 ---SNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIG---TEFLSKNLTDGARNV 268
                 S +  +  I+  +G+ +  N N   + +      I          +++      
Sbjct: 250 ADREAVSFNTQRVEIELLKGVKIPVNTNPTNVFNNALFGDILRLEKALEDPSVSGAELTA 309

Query: 269 LTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
                   + Q    +  +RA LG     +      +  +       +S +  V+     
Sbjct: 310 YIDNFTKHIDQ----VTAERAELGARVNRVEMLESRILQQEITAKRIMSDNEDVDLEKVI 365

Query: 329 AQLSTLINKIEMSYMITTKLQKLSILNYL 357
             L+   +    +  +  ++ + +++++L
Sbjct: 366 IDLTIQESVHRAALAVGARIMQPTLMDFL 394


>gi|224418230|ref|ZP_03656236.1| flagellar hook-associated protein FlgL [Helicobacter canadensis MIT
           98-5491]
 gi|253827555|ref|ZP_04870440.1| flagellar hook-associated protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141763|ref|ZP_07803956.1| flagellar hook-protein FlgL [Helicobacter canadensis MIT 98-5491]
 gi|253510961|gb|EES89620.1| flagellar hook-associated protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130794|gb|EFR48411.1| flagellar hook-protein FlgL [Helicobacter canadensis MIT 98-5491]
          Length = 874

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 51/155 (32%), Gaps = 6/155 (3%)

Query: 61  HIAERLHSNSLVTKRLS---TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
           ++     S  L    L+    +   LS + K + +    LV               A  L
Sbjct: 54  NLTTLTQSKELANNALTFTRHTDTALSELVKNMDNFKSKLVQGANDIHSETSRLAIAQDL 113

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLN---GYFTKDSLAKKSFDQMLQGFLEENS 174
           +   + F++ AN +  G+++F+G  ++ KP N    Y   ++                  
Sbjct: 114 QSLRDHFLSIANTSIGGEFIFAGTATTSKPFNSDGSYNGNNATLNALLSSSNSVTYNITG 173

Query: 175 KSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY 209
             L  G   + + + +  +  F +   +    D  
Sbjct: 174 YELFFGSDNDTNRIISTNVPKFNQSALNPQIMDPN 208


>gi|157160610|ref|YP_001457928.1| flagellar hook-associated protein FlgL [Escherichia coli HS]
 gi|193064538|ref|ZP_03045618.1| flagellar hook-associated protein 3 [Escherichia coli E22]
 gi|194428487|ref|ZP_03061027.1| flagellar hook-associated protein 3 [Escherichia coli B171]
 gi|209918337|ref|YP_002292421.1| flagellar hook-associated protein FlgL [Escherichia coli SE11]
 gi|260843323|ref|YP_003221101.1| flagellar hook-filament junction protein FlgL [Escherichia coli
           O103:H2 str. 12009]
 gi|300821136|ref|ZP_07101285.1| flagellar hook-associated protein 3 [Escherichia coli MS 119-7]
 gi|300918687|ref|ZP_07135267.1| flagellar hook-associated protein 3 [Escherichia coli MS 115-1]
 gi|312971220|ref|ZP_07785398.1| flagellar hook-associated protein 3 [Escherichia coli 1827-70]
 gi|331667484|ref|ZP_08368348.1| flagellar hook-associated protein 3 [Escherichia coli TA271]
 gi|331676874|ref|ZP_08377570.1| flagellar hook-associated protein 3 [Escherichia coli H591]
 gi|157066290|gb|ABV05545.1| flagellar hook-associated protein 3 [Escherichia coli HS]
 gi|192927790|gb|EDV82404.1| flagellar hook-associated protein 3 [Escherichia coli E22]
 gi|194413539|gb|EDX29821.1| flagellar hook-associated protein 3 [Escherichia coli B171]
 gi|209911596|dbj|BAG76670.1| flagellar hook-filament junction protein 3 FlgL [Escherichia coli
           SE11]
 gi|257758470|dbj|BAI29967.1| flagellar hook-filament junction protein FlgL [Escherichia coli
           O103:H2 str. 12009]
 gi|300414161|gb|EFJ97471.1| flagellar hook-associated protein 3 [Escherichia coli MS 115-1]
 gi|300526435|gb|EFK47504.1| flagellar hook-associated protein 3 [Escherichia coli MS 119-7]
 gi|310336422|gb|EFQ01608.1| flagellar hook-associated protein 3 [Escherichia coli 1827-70]
 gi|323163693|gb|EFZ49514.1| flagellar hook-associated protein 3 [Escherichia coli E128010]
 gi|324017413|gb|EGB86632.1| flagellar hook-associated protein 3 [Escherichia coli MS 117-3]
 gi|331065069|gb|EGI36964.1| flagellar hook-associated protein 3 [Escherichia coli TA271]
 gi|331075563|gb|EGI46861.1| flagellar hook-associated protein 3 [Escherichia coli H591]
          Length = 317

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 112/352 (31%), Gaps = 48/352 (13%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNG----YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I                    S+   +     +E        N+ 
Sbjct: 175 -------TGDKIFDSIT-------------------SNAVAEPDGSASET-------NLF 201

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
            + D    A + T                 K    ++  L+ ++  RA LG     +   
Sbjct: 202 AMLDSAIAA-LKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 261 DSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|253998481|ref|YP_003050544.1| flagellar hook-associated protein FlgL [Methylovorus sp. SIP3-4]
 gi|253985160|gb|ACT50017.1| flagellar hook-associated protein 3 [Methylovorus sp. SIP3-4]
          Length = 301

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/353 (13%), Positives = 110/353 (31%), Gaps = 55/353 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST++I++        L  +  KL +++ +G+               L   Q ++  ++ 
Sbjct: 3   ISTNTIYQTGINKISALQSEQYKLQQQVSSGKRILTPADDPVGAARALTISQAQSINSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++ +  L++ ++ L+S+  ++      LV        + +    A  L +  +  +
Sbjct: 63  ADNRAMASFNLNSIESTLTSVTDLMVSAKSTLVGAGNAVLSSEEKNYIATQLSNDLQELI 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G YLF G                  K +                     ++
Sbjct: 123 GLANSKDGNGNYLFGGF-----------------KNTTQPYTATTTGATYNGDNGQMDMQ 165

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           VS                            S   +    ++ +  +              
Sbjct: 166 VSD-----------------------TRRMSTTENGPDVFQAEGNDV------------- 189

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
               ++ I     +   T  A N       +++ +G+  ++  RA  G   K I+     
Sbjct: 190 -FATLSNIVDLLSNPATTSAALNTALASANTSLDKGMDNVLTVRASTGSKLKEIDALDNN 248

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++N      +S    ++   A + ++     +E +     +L  L++  Y+
Sbjct: 249 GDDRNLQYKAELSDIQDLDYAQALSDITKQKTILEAAQQSYVQLSGLTLFKYI 301


>gi|209884511|ref|YP_002288368.1| hypothetical protein OCAR_5371 [Oligotropha carboxidovorans OM5]
 gi|209872707|gb|ACI92503.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
          Length = 511

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 6/205 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M   G+S       +      +      L +++ +G+ SD    LG           + +
Sbjct: 1   MTIEGVS--GRTSYLGTSLINIRTQLDTLTQQLASGRKSDTYSGLGMNSAFATNLRSQLS 58

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++   ++ S VT R++ +   L  + K+  ++        +    N +      +   S
Sbjct: 59  LLSGYQNTQSNVTTRINVANLSLQGLIKMRTEVQSAATGSSQVLNANGQ-TAGQQIGYAS 117

Query: 121 YESFVTFANMTDEGQYLFSG--INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
           +   ++  N     +YLFSG  I++            +  K     ++   L  +  +  
Sbjct: 118 FTQAISMLNTQSADRYLFSGRSIDTPATAKADDILNGADGKDGLKAVIDDRLIADQGTGN 177

Query: 179 AGQ-HLEVSSMNAQQMTDFIKQLED 202
            G+   + +        DF+     
Sbjct: 178 MGRLETDATGSVVTVGEDFVDSPFG 202



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 54/149 (36%), Gaps = 11/149 (7%)

Query: 220 HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF---------LSKNLTDGARNVLT 270
                ++     +   A  N    R+++    +               +NL +   + L 
Sbjct: 363 GTAVAQVDGAVQVRYGATANESAFRNLLQNMAVYAAVTTTVDPNDPAGQNLANAQISALN 422

Query: 271 KKMLSTVQ--QGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
           +++ + +    G + + +  A    S+              ++  T + +  G++ +   
Sbjct: 423 ERVNANLAVKAGATSVEDIEAQFAGSQAATKAASTRQAQTTSMAQTMLDQIEGIDDNEVA 482

Query: 329 AQLSTLINKIEMSYMITTKLQKLSILNYL 357
           A++  L   ++ SY  T  L +L++L +L
Sbjct: 483 AKILALQTSLQASYQTTASLYQLNLLKFL 511


>gi|16129046|ref|NP_415601.1| flagellar hook-filament junction protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89107929|ref|AP_001709.1| flagellar hook-filament junction protein [Escherichia coli str.
           K-12 substr. W3110]
 gi|170080734|ref|YP_001730054.1| flagellar hook-filament junction protein [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238900337|ref|YP_002926133.1| flagellar hook-filament junction protein [Escherichia coli BW2952]
 gi|256023219|ref|ZP_05437084.1| flagellar hook-associated protein FlgL [Escherichia sp. 4_1_40B]
 gi|300950180|ref|ZP_07164124.1| flagellar hook-associated protein 3 [Escherichia coli MS 116-1]
 gi|300954377|ref|ZP_07166831.1| flagellar hook-associated protein 3 [Escherichia coli MS 175-1]
 gi|301029702|ref|ZP_07192756.1| flagellar hook-associated protein 3 [Escherichia coli MS 196-1]
 gi|301644497|ref|ZP_07244492.1| flagellar hook-associated protein 3 [Escherichia coli MS 146-1]
 gi|307137718|ref|ZP_07497074.1| flagellar hook-associated protein FlgL [Escherichia coli H736]
 gi|331641627|ref|ZP_08342762.1| flagellar hook-associated protein 3 [Escherichia coli H736]
 gi|416996|sp|P29744|FLGL_ECOLI RecName: Full=Flagellar hook-associated protein 3; Short=HAP3;
           AltName: Full=Hook-filament junction protein
 gi|407679|gb|AAA18322.1| hook-associated protein 3 [Escherichia coli]
 gi|1651529|dbj|BAA35892.1| flagellar hook-filament junction protein [Escherichia coli str. K12
           substr. W3110]
 gi|1787324|gb|AAC74167.1| flagellar hook-filament junction protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169888569|gb|ACB02276.1| flagellar hook-filament junction protein [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238861109|gb|ACR63107.1| flagellar hook-filament junction protein [Escherichia coli BW2952]
 gi|260449777|gb|ACX40199.1| flagellar hook-associated protein 3 [Escherichia coli DH1]
 gi|299877390|gb|EFI85601.1| flagellar hook-associated protein 3 [Escherichia coli MS 196-1]
 gi|300318613|gb|EFJ68397.1| flagellar hook-associated protein 3 [Escherichia coli MS 175-1]
 gi|300450465|gb|EFK14085.1| flagellar hook-associated protein 3 [Escherichia coli MS 116-1]
 gi|301077161|gb|EFK91967.1| flagellar hook-associated protein 3 [Escherichia coli MS 146-1]
 gi|309701355|emb|CBJ00656.1| flagellar hook-associated protein 3 [Escherichia coli ETEC H10407]
 gi|315135715|dbj|BAJ42874.1| flagellar hook-associated protein FlgL [Escherichia coli DH1]
 gi|315618253|gb|EFU98843.1| flagellar hook-associated protein 3 [Escherichia coli 3431]
 gi|323937823|gb|EGB34087.1| flagellar hook-associated protein 3 [Escherichia coli E1520]
 gi|323942552|gb|EGB38719.1| flagellar hook protein 3 [Escherichia coli E482]
 gi|331038425|gb|EGI10645.1| flagellar hook-associated protein 3 [Escherichia coli H736]
          Length = 317

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 112/352 (31%), Gaps = 48/352 (13%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNG----YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I                    S+   +     +E        N+ 
Sbjct: 175 -------TGDKIFDSIT-------------------SNAVAEPDGSASET-------NLF 201

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
            + D    A + T                 K    ++  L+ ++  RA LG     +   
Sbjct: 202 AMLDSAIAA-LKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 261 DSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|42522142|ref|NP_967522.1| FgL, flagellar protein [Bdellovibrio bacteriovorus HD100]
 gi|39574673|emb|CAE78515.1| FgL, flagellar protein [Bdellovibrio bacteriovorus HD100]
          Length = 361

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 124/369 (33%), Gaps = 42/369 (11%)

Query: 13  ERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNHIAERLHS 68
            ++N    +   D   L  +  T +     SD  L     +T+  E       I    ++
Sbjct: 10  NQVNQNLTKNRSDMADLQNQAATQKRINKPSDDPLASARVLTARTEERGNTQFIKNINNA 69

Query: 69  NSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFP-INAGMLRDSYESFVTF 127
            S     L  S   LS + +I+       V      + N +   + A  +   Y   +  
Sbjct: 70  RSF----LEFSDQSLSELTEILVRAKELAVSQSNDASGNEESRMVTASEIEQIYNQSIQI 125

Query: 128 ANMTDEGQYLFSGINSSEKPLN---GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
            N     +Y+F G  +   P N    YF  DS  K    +     +      +  G+ L 
Sbjct: 126 GNRKLGERYIFGGQKTQTTPFNQSGEYFGNDSDMKIQTQKDSFVAMNLPGSKVFLGRGLG 185

Query: 185 VSSMNAQQ---------MTDFIKQLEDKFSD----DEYWANNWSNASDHNIKYRIKDTEG 231
              +   Q         + DF  Q  ++       D  +      AS+   + R    + 
Sbjct: 186 GDGIVRAQYETPTDVQSLKDFQNQEVERQQVNEEVDSNFLTTRGPASESGRQSRADRQDP 245

Query: 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARN-VLTKKMLSTVQQGLSGIIEQRAV 290
           +  S  VN            + +   +  ++    +    ++ L T+ Q +S ++  R+ 
Sbjct: 246 VTGSVGVN------------LFSTLKNLEISLKTNDKAGVQESLDTLDQAISQVVLARSE 293

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISK--SIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           +G     +N     L  +  ++D  ++       +     + ++   + ++ +   + KL
Sbjct: 294 VGSRIMAVNNTNDSL--QKAVVDNKVTASQLEDADAFQVISDINKTDSTLKATLETSGKL 351

Query: 349 QKLSILNYL 357
            + S+L++L
Sbjct: 352 IQPSLLDFL 360


>gi|315654566|ref|ZP_07907472.1| flagellar hook-associated protein 3 [Mobiluncus curtisii ATCC
           51333]
 gi|315491030|gb|EFU80649.1| flagellar hook-associated protein 3 [Mobiluncus curtisii ATCC
           51333]
          Length = 327

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 126/356 (35%), Gaps = 30/356 (8%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
             T ++TS +        +         ++++ +G+   +     A   S +   +E   
Sbjct: 1   MITRMTTSMMAGTTLSTIQRNFNRLADANKKLSSGKRMSFASDDPASSVSSMRLRKELAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   + S     L+TS A + S+ +   +    L+  ++G   +      A  LR   
Sbjct: 61  TEQYKRNISDANSWLATSDAAMQSVAERYTEARTLLINSIDGALGSQSQGALAAQLRKVA 120

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           ES ++ AN T  G+ +F+G NS +                   + +   + +    LA +
Sbjct: 121 ESIMSQANATYLGRTVFAG-NSDKG-----------------LVFKTGSDGHDTIFLAAE 162

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
             E+++    +  D    ++     ++ +        D          +   +  + N  
Sbjct: 163 KDEITAKTVDRRIDADTTVQANLDGNKLFGTGTVKWDD---------NDETKLDTDNNPS 213

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
            +  ++  A I     S     G   +  + +   + +  + + E ++ +G   K + E 
Sbjct: 214 VMNLLVEAAKI---LESPTGPTGDNRLKIESIQKELTERFAKLQEAQSAVGARHKQVLEA 270

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  +      +   IS    ++  +A   +S      + S   T ++ + ++L+YL
Sbjct: 271 QENVIFDLEQVKGQISSVEDIDILSATIDMSLANMAYQSSLGSTQRVVQPTLLDYL 326


>gi|302344091|ref|YP_003808620.1| Flagellin and related hook-associated protein [Desulfarculus
           baarsii DSM 2075]
 gi|301640704|gb|ADK86026.1| Flagellin and related hook-associated protein [Desulfarculus
           baarsii DSM 2075]
          Length = 817

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 91/310 (29%), Gaps = 36/310 (11%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+T+  +   +          L     KL ++++TGQ      + G    +I+    + +
Sbjct: 1   MRTSNANQYRLISS---DLSNLLAAQYKLQKQVLTGQVGTTPSEQGGASNAIMRTNLQMD 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I++   +       L++S+  + +M  I+         +  G   + +    A  + + 
Sbjct: 58  LISQYRVNLESADSWLTSSETAMQNMVNILTQAKTVAEKMSTGTQQSLEQQTAAEEVSNI 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +   VT +N    G Y+F G +++ +P+         +  +           +  +    
Sbjct: 118 FAQLVTLSNTKVNGLYIFGGTSTNSRPVITALAAAGPSSLTRTVAAGHDSTADVVANPLT 177

Query: 181 QHLEVSSMNAQQMTD------------FIKQLEDKFSDDEYWANNWSNA----------- 217
                  +    +                  +    S D   A NW              
Sbjct: 178 SGAYAFQIGRNSVGTSSTITISANNTLGETGIVPPLSFDAG-AANWITTQTAQDYQAQLL 236

Query: 218 --------SDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVL 269
                   S   +  RI +T      +    +       V+  G    + ++ DGA    
Sbjct: 237 TLRYAFASSSSEVSARIGETFSWTGDSAAGEQTFHSYAKVSFSGAGTATIDI-DGAPTYT 295

Query: 270 TKKMLSTVQQ 279
                  V+ 
Sbjct: 296 ADSAQELVEA 305



 Score = 53.6 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 1/113 (0%)

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
            +M + V+  E L+          ++++ L  +   +  I++  A  G  +  I      
Sbjct: 705 QLMDMFVMWEEALASG-DQEYAQTVSQQALDVLTAAMEQILDYVADSGARQDRIAVRGAV 763

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + ++       +    GV+   A   LS L      S  +T+ + ++ ++NY+
Sbjct: 764 MDDQELYHIGVLEDLDGVDTTQAFIDLSMLQTAYNTSLKVTSTISEMYLVNYI 816


>gi|293409449|ref|ZP_06653025.1| flagellar hook-associated protein 3 [Escherichia coli B354]
 gi|301023270|ref|ZP_07187067.1| flagellar hook-associated protein 3 [Escherichia coli MS 69-1]
 gi|291469917|gb|EFF12401.1| flagellar hook-associated protein 3 [Escherichia coli B354]
 gi|300397115|gb|EFJ80653.1| flagellar hook-associated protein 3 [Escherichia coli MS 69-1]
          Length = 317

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 118/348 (33%), Gaps = 40/348 (11%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
            AN TD  G+Y+F+G  +   P                     F E + + +   + ++ 
Sbjct: 124 LANTTDGNGRYIFAGYKTETAP---------------------FSEADGEYVGGAESIKQ 162

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
               ++ M   I    DK  D        S  S+   +     +E        N+  + D
Sbjct: 163 QVDASRSMV--IGHTGDKIFD--------SITSNAVAEPDGSASET-------NLFAMLD 205

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
               A + T                 K    ++  L+ ++  RA LG     +       
Sbjct: 206 SAIAA-LKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTIRAELGTQLNELESLDSLG 264

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 265 SDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|117919779|ref|YP_868971.1| flagellar hook-associated protein FlgL [Shewanella sp. ANA-3]
 gi|117612111|gb|ABK47565.1| flagellar hook-associated protein 3 [Shewanella sp. ANA-3]
          Length = 403

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 144/408 (35%), Gaps = 63/408 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEWEQEKN 60
           +S++ IF +      +    + K+ E++ +G+       D    LG          Q   
Sbjct: 3   LSSAQIFNQSITSVLQKQTATSKILEQLSSGKKVNTAGDDPVAALGID-----NLNQRNA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + + +    T RL+ +++ L S + +   +   ++  + G   +++  + A  ++ S
Sbjct: 58  LVDQFMKNIDYATNRLAVTESKLGSAENLASSIREQVMRAVNGTLADSERQMIADEMKGS 117

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ-----------MLQG 168
            E  ++ AN  D  G Y+FSG ++ ++P     +       S D             L  
Sbjct: 118 LEELLSIANSKDESGNYMFSGYSTDKEPFAFDNSTPPKIVYSGDSGIRNSLVQSGVALGT 177

Query: 169 FLEENSKSLLAGQHLEVSSMN--AQQMTDF------IKQLEDKFSDDE--YWANNWSNAS 218
            +  ++  + A   L   S+N  A Q  +F      I       +D     +++N S  +
Sbjct: 178 NVPGDTAFMKAPNGLGDYSVNYLASQQGEFSVKTAKIADPATYLADTYTFNFSDNGSGGT 237

Query: 219 D-----------------------------HNIKYRIKDTEGIDVSANVNMRGIRDIMFV 249
           +                              NI  +    +   +     +     I   
Sbjct: 238 NLQVLDSANNPVANIANFDAATPVSFNGIEVNISGKPSAGDSFTMEPQSEVSIFDTISRA 297

Query: 250 AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
             +  +  S N   G       ++L+ +  G++ I   R+V G + K +   +     + 
Sbjct: 298 IALIEDPNSANTPQGRSQ--LAQILNDIDSGVNQISSARSVAGNNLKAVESYKDTHIEEQ 355

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  + +S    ++  +A  + +     +     + +K+  +S+ +Y+
Sbjct: 356 VLNTSALSLLEDLDYASAITEFAKQQLALNAVSSVFSKVGSVSLFDYI 403


>gi|92116888|ref|YP_576617.1| hypothetical protein Nham_1333 [Nitrobacter hamburgensis X14]
 gi|91799782|gb|ABE62157.1| hypothetical protein Nham_1333 [Nitrobacter hamburgensis X14]
          Length = 587

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/317 (10%), Positives = 77/317 (24%), Gaps = 11/317 (3%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
             S                       +L+   + ++ +          L        D  
Sbjct: 274 AASATNLNAALTDAEATTSPYG---AQLTGVSSSVAGVTVTPAQASIDLGAATPAAGDTV 330

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQG 168
            F  N              + +   G     G    E   N                L  
Sbjct: 331 SFTFNLPDGSSETVQLTASSEVPTPGGCFAIGTTPDETTANLNGALTKSIGTLAKTSLVA 390

Query: 169 FLEENSKSLLAGQHLEVSSMNA-QQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY--R 225
                +         +   +     +      +    ++   W    +           R
Sbjct: 391 ASAIRATHDFFDSPPQRVDVTPPATLATATGAVNGTAANTVQWYTGDAGTGSARATSSVR 450

Query: 226 IKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTK-----KMLSTVQQG 280
           +  +  +      N   IR +M    +     +        N ++          TV  G
Sbjct: 451 VDPSVTVQYGIRANEDAIRSLMESVAVLAAVTTSPTDPNGANQISALNARIAQNLTVTPG 510

Query: 281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEM 340
              I + ++ L  ++  + +     +     +   + ++  V      +QL  L   ++ 
Sbjct: 511 KQNIQDIQSDLANAQTVMKDATARQKLTQATMQNIVDQAETVSTDQVASQLLALQTSLQA 570

Query: 341 SYMITTKLQKLSILNYL 357
           SY  T  L +LS++ +L
Sbjct: 571 SYQTTAMLSQLSLVKFL 587



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 1/174 (0%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
             + L      L  ++ +G+ S     +GA     +    + ++IA    + + +   + 
Sbjct: 16  SIQSLKVQMADLQSQLTSGKKSTTYSGMGANEGFAIAARAQLSNIAAYTDTMTKINTNIQ 75

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
            +   L ++  I   +        +      +           + S V   N     +Y+
Sbjct: 76  VANTALQALADIGSQLQTAANSGSQALNSAGQ-TAGQQTAVAEFSSMVGILNTQAGDRYI 134

Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
           FSG     +P+       +        + Q   E N   L  G    V+  +  
Sbjct: 135 FSGSTIYTQPVASSDLILNGNGAGQAGLKQVISERNQADLGTGGFGRVTISSPT 188


>gi|152965587|ref|YP_001361371.1| flagellar hook-associated protein 3 [Kineococcus radiotolerans
           SRS30216]
 gi|151360104|gb|ABS03107.1| flagellar hook-associated protein 3 [Kineococcus radiotolerans
           SRS30216]
          Length = 302

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 102/353 (28%), Gaps = 60/353 (16%)

Query: 5   GISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE 64
            I+T+++    N           KL E++ +G S   G +   R  + L    +     E
Sbjct: 9   SIATNALTNLQNT-----QTRMAKLQEQITSGNSLPKGSEDSVRAAAALRLNDQIAVNTE 63

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
              +       + T +  L S  K +Q +    V    G  D       A  +    E+ 
Sbjct: 64  NGRNLDEARAWMVTQEPALESTTKALQKVRELTVRASNGTFDATARKAIAAEITALKETI 123

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           +  AN   +G+ +F+G ++           D+    S D                     
Sbjct: 124 LGDANTQYQGRAVFAGTSAGT------VAYDATTYASNDDTNTTVTPAV----------- 166

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
                                                +   +     + V+ + N     
Sbjct: 167 -----------------------------------GVVTRTVSPGVHMQVNISGNSV--- 188

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                  +  E  +        +      LST+   ++      A +G     ++     
Sbjct: 189 YGSGNDSLFAELDTLAQKITDGDPTAAASLSTIDGRITKATNAMATIGARTNQLDHAEEV 248

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             N+   ++  ++   GV+   A+ + +      + +  +T K  + S+L++L
Sbjct: 249 NANQLAYLEAQLNDVQGVDPAKAYVEFTQQNVAYQAALQVTAKTVQTSLLDFL 301


>gi|82544452|ref|YP_408399.1| flagellar hook-associated protein FlgL [Shigella boydii Sb227]
 gi|81245863|gb|ABB66571.1| hook-filament junction protein [Shigella boydii Sb227]
 gi|332094135|gb|EGI99187.1| flagellar hook-associated protein 3 [Shigella boydii 3594-74]
          Length = 317

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 110/356 (30%), Gaps = 56/356 (15%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +   +++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFAIQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLAMDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNG----YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D         +AS+ N+                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDG--------SASETNL------------------- 200

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG----LSGIIEQRAVLGISEKN 297
                  +        +      A   +    L    +G    L+ ++  RA LG     
Sbjct: 201 ----FAMLDSAIAALKTPVADSEADKEIAAAALDKTNRGLKNSLNNVLAVRAELGTQLNE 256

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +        ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 257 LESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|170680479|ref|YP_001744097.1| flagellar hook-associated protein FlgL [Escherichia coli SMS-3-5]
 gi|170518197|gb|ACB16375.1| flagellar hook-associated protein 3 [Escherichia coli SMS-3-5]
          Length = 317

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 112/352 (31%), Gaps = 48/352 (13%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNG----YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTESAPFSEVDGKYEGGAESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I                    S+   +     +E        N+ 
Sbjct: 175 -------TGDKIFDSIT-------------------SNAVAEPDGSASET-------NLF 201

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
            + D    A + T                 K    ++  L+ ++  RA LG     +   
Sbjct: 202 AMLDSAIAA-LKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 261 DSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|218704491|ref|YP_002412010.1| flagellar hook-associated protein FlgL [Escherichia coli UMN026]
 gi|293404367|ref|ZP_06648361.1| flgL [Escherichia coli FVEC1412]
 gi|298380147|ref|ZP_06989752.1| flagellar hook-associated protein 3 FlgL [Escherichia coli
           FVEC1302]
 gi|300899602|ref|ZP_07117841.1| flagellar hook-associated protein 3 [Escherichia coli MS 198-1]
 gi|331662489|ref|ZP_08363412.1| flagellar hook-associated protein 3 [Escherichia coli TA143]
 gi|218431588|emb|CAR12467.1| flagellar hook-filament junction protein [Escherichia coli UMN026]
 gi|291428953|gb|EFF01978.1| flgL [Escherichia coli FVEC1412]
 gi|298279845|gb|EFI21353.1| flagellar hook-associated protein 3 FlgL [Escherichia coli
           FVEC1302]
 gi|300356873|gb|EFJ72743.1| flagellar hook-associated protein 3 [Escherichia coli MS 198-1]
 gi|331060911|gb|EGI32875.1| flagellar hook-associated protein 3 [Escherichia coli TA143]
          Length = 317

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 108/348 (31%), Gaps = 40/348 (11%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
            AN TD  G+Y+F+G  +   P +    K     +S  Q +                  V
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEADGKYEGGAESIKQQVDA------------SRSMV 171

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                 ++ D I        D      N     D  I                       
Sbjct: 172 IGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAI----------------------- 208

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
               A + T                 K    ++  L+ ++  RA LG     +       
Sbjct: 209 ----AALKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLG 264

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 265 SDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|191168484|ref|ZP_03030272.1| flagellar hook-associated protein 3 [Escherichia coli B7A]
 gi|190901503|gb|EDV61264.1| flagellar hook-associated protein 3 [Escherichia coli B7A]
          Length = 317

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 111/352 (31%), Gaps = 48/352 (13%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
            AN TD  G+Y+F+G  +   P +    K     +S  Q +                  V
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIRQQVDA------------SRSMV 171

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                 ++ D I        D         +AS+ N+                       
Sbjct: 172 IGHTGDKIFDSITSNAVAEPDG--------SASETNL----------------------- 200

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG----LSGIIEQRAVLGISEKNINEE 301
              +        +      A   +    L    +G    L+ ++  R  LG     +   
Sbjct: 201 FAMLDSAIAALKTPVADSEADKEIAAAALDKTNRGLKNSLNNVLTVRTGLGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 261 DSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|237750865|ref|ZP_04581345.1| flagellar hook-associated protein FlgL [Helicobacter bilis ATCC
           43879]
 gi|229373310|gb|EEO23701.1| flagellar hook-associated protein FlgL [Helicobacter bilis ATCC
           43879]
          Length = 850

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 52/150 (34%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  +      +M      +  +   ++ ++ +G+   YG Q  +     L+ E ++ 
Sbjct: 1   MRVTFGTKY---NQMLNNNGNITSNLNDMNTKIASGKKIQYGWQDASVSNQNLKLEYDET 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +        +   +   L  +   +      L+               A  L  +
Sbjct: 58  TLQQGIDVARTAETQTLNTDKALQEISLAMVQFKTKLLHAANDLHTPTSREALARDLEAT 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
               ++ AN +  G+++F+G     +P + 
Sbjct: 118 KAHIISIANTSVGGKFIFAGSKVDVQPFDS 147



 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
              I+ +            +   D  +++  +  +  +      I +  +  G   +   
Sbjct: 732 DDAIQSVRDGIYRAGALHGQRYDDTMKSLGIQNCIELIDHLSDHIEKVISKNGAHTRTFQ 791

Query: 300 EE---RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
                   ++ + + I      +IG +    + + + L N  +     T ++  LS++NY
Sbjct: 792 NSVARNEIIKTQVSGIKG---DTIGADLAETYNKFTNLSNNYQAVLSSTNRINNLSLVNY 848

Query: 357 L 357
           L
Sbjct: 849 L 849


>gi|323703357|ref|ZP_08115007.1| flagellar hook-associated protein 3 [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531720|gb|EGB21609.1| flagellar hook-associated protein 3 [Desulfotomaculum nigrificans
           DSM 574]
          Length = 307

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 116/358 (32%), Gaps = 61/358 (17%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNH 61
           +S   +   M    ++  + S K  E++ TG    + SD   ++   +         + +
Sbjct: 4   VSNILMANNMANYIQKNLQRSAKSQEQISTGKTIIRPSDNPSEISHLMAVNATIAGNEQY 63

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
                         L+ S   L ++ K +QD     +    G   +         +    
Sbjct: 64  ARNIQDG----LAYLNQSDTALDTVGKYLQDAKTLALQAANGTLTDADREHIKEQVDKLI 119

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           ++    AN +  G+YLF+G  +   P       D   +  +D    G  +  ++ +L   
Sbjct: 120 DAVKDIANSSLGGKYLFAGTKNDLPPFRRVDLPDGTTEIHYD----GNEQPVTREILFQA 175

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
             EV+S  A         +    S  +     +  A+  N+K  ++    I+ S      
Sbjct: 176 PYEVTSAGAGA-----NGVFGNLSGTKVIGGPF--AALINLKKNLEPGGDINQS------ 222

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                                           L+ +      I+ +R  +G   +++   
Sbjct: 223 --------------------------------LTELDNAHDAILTKRVGVGARTRHLEAV 250

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI--EMSYMITTKLQKLSILNYL 357
           +  L+++   + + +    G +   A   +    N++  + S M  + L   S+L YL
Sbjct: 251 KEQLEDQEVRLKSVLVDIQGADI--AKLTIEVAQNQLVHQASLMTASNLLNTSLLQYL 306


>gi|59712474|ref|YP_205250.1| flagellar hook-associated protein FlgL [Vibrio fischeri ES114]
 gi|46394803|gb|AAS91568.1| flagellar hook-associated protein 3 [Vibrio fischeri ES114]
 gi|59480575|gb|AAW86362.1| flagellar hook-associate protein 3, FlgL [Vibrio fischeri ES114]
          Length = 397

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 53/403 (13%), Positives = 130/403 (32%), Gaps = 61/403 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSIL---EWEQEKNHI 62
           IS+   ++ +                ++ +G+     L  G    + L      Q+K  +
Sbjct: 5   ISSFHNYQAVQNDISRQEAKVHHNSAQLASGKKL---LTAGDDPVAALYAQNLTQKKEEL 61

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            +   + +L   RL   +  +++ ++   D    ++ ++ G         +A  L+    
Sbjct: 62  RQYTDTITLARNRLERHEVAIANAEQFADDAKRSVMEMINGSLAPEDRYAHAQDLKGIAS 121

Query: 123 SFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           +F+   NM D  G YLFSG     +P   +F  +           Q  L+ +    +A  
Sbjct: 122 NFLNLTNMLDESGNYLFSGTKPKTQP---FFKANDGTVAYAGDEYQRKLKVSGSIEVAVN 178

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN-- 239
                     ++ +     + +++  E      S A++ N       T  +  SA+ N  
Sbjct: 179 DAGSKLFT--EIKNPFGDYDPQYALQEGSELLLSQATNTNYTD--PATYEVSFSASANGQ 234

Query: 240 -------------------MRGIRD--------------------------IMFVAVIGT 254
                                GI+                           I       +
Sbjct: 235 YNYQLSKDGSVVKNAQFDPSEGIKYEGVDIQIRGQLKSGDVITLEPKKTISIFDSFKKAS 294

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
           E    ++ D +     +++          + + RA +G  +  ++++    Q+ +  +  
Sbjct: 295 ELALNDVADASTTAELQQVTDEFHAAFIHLSQARAEVGTRQNTLDQQEQQHQDFDLTLSK 354

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +S    ++   A  + +     ++ S     K++ +++ NY+
Sbjct: 355 SLSSIEDLDYAQAVIEFNENTRALQASQQAFGKVKDITLFNYV 397


>gi|90422998|ref|YP_531368.1| hypothetical protein RPC_1487 [Rhodopseudomonas palustris BisB18]
 gi|90105012|gb|ABD87049.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 525

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 66/196 (33%), Gaps = 8/196 (4%)

Query: 167 QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI 226
             F +   + +  G +   S+    Q+          +  +   + + ++ +      RI
Sbjct: 333 TDFFDNPPQRVAGGPNFAAST---TQVAGTAADTVIWYVGESDVSASQTDTARGTAVARI 389

Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGAR---NVLTKKMLSTVQ--QGL 281
            D   +   A  N + +R  +    +     +      A      L +++   +    G 
Sbjct: 390 DDAITVRYGARANEQALRTQLQNVAVFAAVTTNITDVNANGKIAALNQRIAQNLAVIPGT 449

Query: 282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
             I + +A    ++ +I            I  T +    G+       ++  L   ++ S
Sbjct: 450 QTIQDIQADFAGAQSSIKATTDRQTQSKVISQTLLDSIEGINNDEVATKILALQTALQAS 509

Query: 342 YMITTKLQKLSILNYL 357
           Y  T+ L K+S++ +L
Sbjct: 510 YQTTSDLYKMSLVKFL 525



 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 56/182 (30%), Gaps = 8/182 (4%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
              L      L E++ +G+ S      G+  +  L    + N  +    + + V  R++ 
Sbjct: 17  ILNLRSQLDSLTEQLASGKISTTYAGQGSGRSMALGIRAQLNAYSSFADTATNVNTRINV 76

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +   L  +  I   + G  V       DN             +   V   N     +YLF
Sbjct: 77  ANLSLQRLVAINSTVKGAAVSAGSTI-DNTGQTAGQKTANLDFYDSVDMLNAQSGDRYLF 135

Query: 139 SGINSSEKP-------LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
            G  +   P       LNG     +  K+  D+  Q  L  N+   +        +    
Sbjct: 136 GGRITDAPPVAAADQILNGNGATIAGLKQVIDERKQADLGVNANGRVGTAIGAAPASTPT 195

Query: 192 QM 193
            +
Sbjct: 196 TV 197


>gi|218689036|ref|YP_002397248.1| flagellar hook-associated protein FlgL [Escherichia coli ED1a]
 gi|331672602|ref|ZP_08373391.1| flagellar hook-associated protein 3 [Escherichia coli TA280]
 gi|331682585|ref|ZP_08383204.1| flagellar hook-associated protein 3 [Escherichia coli H299]
 gi|218426600|emb|CAR07428.1| flagellar hook-filament junction protein [Escherichia coli ED1a]
 gi|281178192|dbj|BAI54522.1| flagellar hook-filament junction protein 3 FlgL [Escherichia coli
           SE15]
 gi|284920906|emb|CBG33969.1| flagellar hook-associated protein 3 [Escherichia coli 042]
 gi|323190595|gb|EFZ75867.1| flagellar hook-associated protein 3 [Escherichia coli RN587/1]
 gi|331070245|gb|EGI41611.1| flagellar hook-associated protein 3 [Escherichia coli TA280]
 gi|331080216|gb|EGI51395.1| flagellar hook-associated protein 3 [Escherichia coli H299]
          Length = 317

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 117/348 (33%), Gaps = 40/348 (11%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
            AN TD  G+Y+F+G  +   P                     F E + K     + ++ 
Sbjct: 124 LANTTDGNGRYIFAGYKTESAP---------------------FSEADGKYEGGAESIKQ 162

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
               ++ M   I    DK  D        S  S+   +     +E        N+  + D
Sbjct: 163 QVDASRSMV--IGHTGDKIFD--------SITSNAVAEPDGSASET-------NLFAMLD 205

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
               A + T                 K    ++  L+ ++  RA LG     +       
Sbjct: 206 SAIAA-LKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLG 264

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 265 SDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|258404736|ref|YP_003197478.1| flagellar hook-associated protein 3 [Desulfohalobium retbaense DSM
           5692]
 gi|257796963|gb|ACV67900.1| flagellar hook-associated protein 3 [Desulfohalobium retbaense DSM
           5692]
          Length = 292

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 97/357 (27%), Gaps = 65/357 (18%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S+      M      +N+ +  L ++  TG+  +        V  IL +  +  
Sbjct: 1   MRVTLASSFQF---MQTEIGRINEKTADLQKQAATGKKINEVSDDPTAVRPILNYRTQIE 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                  +       L      L     ++       V    G   +        ++   
Sbjct: 58  SSDRYTRNMDAAKTGLKNYDYQLGRAFDLLVQAKEQTVAAGNGALRDEDMATMGKIVEGL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            E  +  AN   +G+Y+F+G     KP     T +       +             +   
Sbjct: 118 REELLGVANSQSDGRYIFAGYEEDTKPFADDGTFNGDD----NTRTLEIAPGEEVDISVS 173

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                +S     + + ++ +     D                   I   +          
Sbjct: 174 GKEVFASTTPDNIFETLQNISTAMKDPAI---------------EIDSNDV--------- 209

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                                   +   +   + ST     + I    + +   EK + +
Sbjct: 210 -----------------------ESLQEVMDTVSSTRADVGTRINRLESAVSYREKAVLD 246

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                      +  ++S     +     +QL      ++ +  +TTK+ +LS+L+Y+
Sbjct: 247 -----------MKEFLSDYEDADIVEVSSQLMQQETSLKAALAVTTKIGQLSLLDYM 292


>gi|16764540|ref|NP_460155.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197263254|ref|ZP_03163328.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|120305|sp|P16326|FLGL_SALTY RecName: Full=Flagellar hook-associated protein 3; Short=HAP3;
           AltName: Full=Hook-filament junction protein
 gi|47682|emb|CAA36028.1| HAP3 [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16419701|gb|AAL20114.1| hook-filament junction protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197241509|gb|EDY24129.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|261246395|emb|CBG24204.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992958|gb|ACY87843.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157725|emb|CBW17217.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912171|dbj|BAJ36145.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223802|gb|EFX48865.1| Flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129454|gb|ADX16884.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 317

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 113/349 (32%), Gaps = 40/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++E+          + +KL E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLSQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  ++ LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  +   P +         +KS  Q             +      
Sbjct: 123 NLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQ------------QVDSARTM 170

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V      Q+ + I        D      N     D  I                      
Sbjct: 171 VIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAI---------------------- 208

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                A + T     N+          K    ++  L+ ++  RA LG     ++     
Sbjct: 209 -----AALKTPVEGNNVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSL 263

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++       +S  + V+ ++  +        ++ SY   T +Q +S+
Sbjct: 264 GSDRALGQKLQMSNLVDVDWNSVISSYVMQQAALQASYKTFTDMQGMSL 312


>gi|315657527|ref|ZP_07910409.1| flagellar hook-associated protein 3 [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491999|gb|EFU81608.1| flagellar hook-associated protein 3 [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 327

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 126/356 (35%), Gaps = 30/356 (8%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
             T ++TS +        +         ++++ +G+   +     A   S +   +E   
Sbjct: 1   MITRMTTSMMAGTTLSTIQRNFNRLADANKKLSSGKRMSFASDDPASSVSSMRLRKELAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   + S     L+TS A + S+ +   +    L+  ++G   +      A  LR   
Sbjct: 61  TEQYKRNISDANSWLATSDAAMQSVAERYTEARTLLINSIDGALGSQSQGALAAQLRKVA 120

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           ES ++ AN T  G+ +F+G NS +                   + +   + +    LA +
Sbjct: 121 ESIMSQANATYLGRTVFAG-NSDKG-----------------LVFKTGSDGHDTIFLAAE 162

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
             E+++    +  D    ++     ++ +        D          +   +  + N  
Sbjct: 163 KDEITAKTVDRRIDADTTVQANLDGNKLFGTGTIKWDD---------NDKTKLDTDNNPS 213

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
            +  ++  A I          + ++    + +   + +  + + E ++ +G   K + E 
Sbjct: 214 VMNLLVEAAKILESPTGPVGDNRSK---IESIQKELTERFAKLQEAQSAVGARHKQVLEA 270

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  +      +   IS    ++  +A   +S      + S   T ++ + ++L+YL
Sbjct: 271 QENVIFDLEQVKGQISSVEDIDILSATIDMSLASMAYQSSLGSTQRVVQPTLLDYL 326


>gi|167994048|ref|ZP_02575140.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205328028|gb|EDZ14792.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|332988075|gb|AEF07058.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 317

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 113/349 (32%), Gaps = 40/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++E+          + +KL E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYEQNMNGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLSQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  ++ LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  +   P +         +KS  Q             +      
Sbjct: 123 NLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQ------------QVDSARTM 170

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V      Q+ + I        D      N     D  I                      
Sbjct: 171 VIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAI---------------------- 208

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                A + T     N+          K    ++  L+ ++  RA LG     ++     
Sbjct: 209 -----AALKTPVEGNNVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSL 263

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++       +S  + V+ ++  +        ++ SY   T +Q +S+
Sbjct: 264 GSDRALGQKLQMSNLVDVDWNSVISSYVMQQAALQASYKTFTDMQGMSL 312


>gi|331269280|ref|YP_004395772.1| putative flagellar hook-associated protein 3 [Clostridium botulinum
           BKT015925]
 gi|329125830|gb|AEB75775.1| putative flagellar hook-associated protein 3 [Clostridium botulinum
           BKT015925]
          Length = 474

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 43/124 (34%)

Query: 25  DSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLS 84
           +  K+ ++  +G+           V   ++   + N   +   + + V+  L T+   L 
Sbjct: 22  NINKIQQQNTSGKKFRKPSDDPFAVARSMQLHTDINTNKQYSKNITDVSNWLDTTDTALG 81

Query: 85  SMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSS 144
               + Q +   L+    G    ++       + +         N    G Y+F G  S+
Sbjct: 82  QAGNVFQRVRELLISAGNGGYTESERRAIKDEINEKVREISQILNTNFGGNYIFGGTRST 141

Query: 145 EKPL 148
            KP+
Sbjct: 142 TKPI 145



 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 39/101 (38%)

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
            +      A   L  K L  V   ++ +++ RA +G  +  I       ++    +   +
Sbjct: 373 GTDIKNPNAIKDLLTKDLQDVTDTINNLLKIRAEVGAKQNRIEGANDRNKDGTFNMTKIL 432

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           SK   V         +T++     S   + K+ + S+++YL
Sbjct: 433 SKHEDVNYTENMTDYATMLTVYMASLQTSAKIIQPSLMDYL 473


>gi|226314924|ref|YP_002774820.1| flagellar hook-associated protein 3 [Brevibacillus brevis NBRC
           100599]
 gi|226097874|dbj|BAH46316.1| flagellar hook-associated protein 3 [Brevibacillus brevis NBRC
           100599]
          Length = 300

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 103/346 (29%), Gaps = 58/346 (16%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
              +  L   +  +  KL  ++ +G   +            + +        +   +   
Sbjct: 12  SNMLRNLHNSMR-NMDKLQHQLASGSKIEKPSDDPVVAARGMFYRSSLMENDQYKRNVDE 70

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
               +  +   +  +  +++ +   L+   +G    +        +++      T AN  
Sbjct: 71  AKSWMDMTDGTMDEVGNVMKRVKELLIYSADGAISPDDLKTMGSEIQELKNHLGTLANQQ 130

Query: 132 DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
             G+Y+F+G ++++ P +           S +              ++      S++NAQ
Sbjct: 131 INGKYIFAGTDTNKAPYDLTANGGKGDFVSTNSSPINL-------EVSQNVFVTSNINAQ 183

Query: 192 QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAV 251
            + +F              ANN   A D+ I                             
Sbjct: 184 NIFNFPDN-----------ANNMFKALDNIIT---------------------------- 204

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
                    L +G      +  +    Q    ++ +RA LG S   +      L  +   
Sbjct: 205 --------ELNNGRSAAQFQPAI---NQQYDKLLAERASLGASVNRVELIAERLNTQEVG 253

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           I   +SK+   +       L T  +    +     ++ + S+L++L
Sbjct: 254 ITGLLSKNEDADMAKVMTNLKTQESVHSAALGSGARIIQPSLLDFL 299


>gi|90579917|ref|ZP_01235725.1| flagellar hook-associated protein [Vibrio angustum S14]
 gi|90438802|gb|EAS63985.1| flagellar hook-associated protein [Vibrio angustum S14]
          Length = 411

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/411 (11%), Positives = 140/411 (34%), Gaps = 63/411 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEW---EQEKNHI 62
           +ST+S ++ +         +  + + ++ TG+  +     G    S +      Q+   I
Sbjct: 5   VSTASQYQSLTSNLMRKQGEVNESNNQLSTGKRVE---TAGDDPVSSVTIQNYRQQLTQI 61

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            +   S ++   RL   ++ ++ ++  +      ++ ++ G   +N        L    +
Sbjct: 62  DQYKSSITMANNRLGVMESSIAGVEDNLDAAKQKVLRMINGAMASNDRTAFKDELTSLRD 121

Query: 123 SFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
             +  AN  D  G Y+F+G     +P     T   +  +   Q     ++++ +   +  
Sbjct: 122 GLLELANSRDESGNYVFAGNQMDTQPFV-KGTDGKMNYQGDSQSRYAQIDKSVEVKTSLP 180

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDD-----EYWANNWSNAS------DHNIKYRIKDTE 230
             ++ +       DF     D  S           ++++ A          +  +   +E
Sbjct: 181 GDQLFTSIPNPYGDFRPDFSDLSSGSKLHVLSATTSDFTKAQPIDIAFSEAVVTQPDGSE 240

Query: 231 GIDVSANVN--------------MRGIRDIMFVAVIGT---------------------- 254
              +  N++               +G++         +                      
Sbjct: 241 KTVMQYNLSLDGKEVVADQDYDPEKGVQYTAADGSSVSITLDDVEVGDKLTLNPAQKINI 300

Query: 255 -EFLSKNLTDGARNVLTKKMLSTVQQGLSGI-------IEQRAVLGISEKNINEERVFLQ 306
            + L   + +  +   +    +T+Q+ +  I        ++R+ +G   + +  ++    
Sbjct: 301 FDSLQDAIDNAEKPTSSAAAEATLQRVIDDIDSSFLHVSQRRSEVGTIMQQVERQQEQHL 360

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    +++  S    ++   A  +++  +  ++ S    +K ++LS+ NYL
Sbjct: 361 DFELTLNSAQSGLEDLDYSKAIMEMNQQMMALQASQSAFSKTKQLSLFNYL 411


>gi|218700415|ref|YP_002408044.1| flagellar hook-associated protein FlgL [Escherichia coli IAI39]
 gi|218370401|emb|CAR18206.1| flagellar hook-filament junction protein [Escherichia coli IAI39]
          Length = 317

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 118/348 (33%), Gaps = 40/348 (11%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  + + Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVFSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
            AN TD  G+Y+F+G  +   P                     F E + K     + ++ 
Sbjct: 124 LANTTDGNGRYIFAGYKTESAP---------------------FSEADGKYEGGAESIKQ 162

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
               ++ M   I    DK  D        S  S+   +     +E        N+  + D
Sbjct: 163 QVDASRSMV--IGHTGDKIFD--------SITSNAVAEPDGSASET-------NLFAMLD 205

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
               A + T                 K    ++  L+ ++  RA LG     +       
Sbjct: 206 SAIAA-LKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLG 264

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 265 SDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|218694617|ref|YP_002402284.1| flagellar hook-associated protein FlgL [Escherichia coli 55989]
 gi|307310139|ref|ZP_07589789.1| flagellar hook-associated protein 3 [Escherichia coli W]
 gi|218351349|emb|CAU97055.1| flagellar hook-filament junction protein [Escherichia coli 55989]
 gi|306909857|gb|EFN40351.1| flagellar hook-associated protein 3 [Escherichia coli W]
 gi|315060361|gb|ADT74688.1| flagellar hook-filament junction protein [Escherichia coli W]
 gi|320200979|gb|EFW75563.1| Flagellar hook-associated protein FlgL [Escherichia coli EC4100B]
 gi|323379078|gb|ADX51346.1| flagellar hook-associated protein 3 [Escherichia coli KO11]
          Length = 317

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 113/352 (32%), Gaps = 48/352 (13%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNG----YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I                    S+   +     +E        N+ 
Sbjct: 175 -------TGDKIFDSIT-------------------SNAVAEPDGSASET-------NLF 201

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
            + D    A + T                 K    ++  L+ ++  RA LG     +   
Sbjct: 202 AMLDSAIAA-LKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            +   ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 261 DLLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|149194322|ref|ZP_01871419.1| flagellar hook-associated protein L [Caminibacter mediatlanticus
           TB-2]
 gi|149135497|gb|EDM23976.1| flagellar hook-associated protein L [Caminibacter mediatlanticus
           TB-2]
          Length = 846

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%)

Query: 24  KDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83
            +  K   E+ TG+             + L+ + E N   +   S +        S   L
Sbjct: 8   SELNKTQTELSTGKKIQNLYDNSTIYNNYLKLDTEINTFTQIKSSANFALNFARESDTTL 67

Query: 84  SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS 143
           + +   + +    L+       D          L+         AN +  G+Y+FSG   
Sbjct: 68  NDIVSTLTNFKTKLINAANDTNDITSREAIVSELKGELNHLKDLANSSINGKYIFSGSAF 127

Query: 144 SEKPLNGYF 152
           + KP++  F
Sbjct: 128 NIKPIDDDF 136



 Score = 40.8 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 55/139 (39%), Gaps = 1/139 (0%)

Query: 219 DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQ 278
           D NI ++  ++  ID         ++  +     G  F + N ++  R++  +  +  + 
Sbjct: 708 DSNIYFQANNSLTIDSPQVDFFETLQKAISSVENGENFANAN-SNNPRDIGIQGAIKAID 766

Query: 279 QGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI 338
             L  +    A +G      +     +      ++T  S++I  +   A  +L++L    
Sbjct: 767 HVLDRVRRSHAKIGAVSNEFDMTIQRVDMLKVNVETLQSENIDTDIGEASMKLNSLQLSY 826

Query: 339 EMSYMITTKLQKLSILNYL 357
           +       K+  L++LNYL
Sbjct: 827 QALLASIAKINNLTLLNYL 845


>gi|150019109|ref|YP_001311363.1| flagellar hook-associated protein 3 [Clostridium beijerinckii NCIMB
           8052]
 gi|149905574|gb|ABR36407.1| flagellar hook-associated protein 3 [Clostridium beijerinckii NCIMB
           8052]
          Length = 327

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 115/340 (33%), Gaps = 30/340 (8%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            K    +   L  ++ +G S        +  T I++   E     +   +   VT  L T
Sbjct: 17  MKRNLGNMSTLQNQLSSGNSITRASDNPSTATRIMQLNSEIAANKQYNSNIKDVTNWLDT 76

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +   LS    +   +   +V    G    ++       +           N + +G Y+F
Sbjct: 77  TDTALSEAGNVFSRIRELMVKAGNGAYGKDEISNIKDEIVQKVAQLGDILNSSFDGNYIF 136

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
            G  S+ KP+         +    D+    F   +  +     + ++++    +++  + 
Sbjct: 137 GGTKSTSKPV---VANSDGSISYLDKNGTAFTGTSGTAADPNAYTQINTKLTAEISTGVT 193

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN-MRGIRDIMFVAVIGTEFL 257
                               +      ++ T+  D   +VN    ++DI+          
Sbjct: 194 IEY-----------------NQTSTNILEFTDT-DSGTSVNASDVLKDIVNNL------- 228

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
             N T    + +T   L+ +   +  + + R+ +G  +  ++  +   +++N  + + +S
Sbjct: 229 -SNPTATNLSTVTGSDLTKMDYIIKNVQKCRSTVGAMQNRMDSAQATNEDQNYNMTSILS 287

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   V+      + S        S   + K+   ++L+YL
Sbjct: 288 EVGDVDYTQKTMEYSVAQTVYTASLQTSAKVLTKTLLDYL 327


>gi|322714171|gb|EFZ05742.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 317

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 113/349 (32%), Gaps = 40/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++E+          + +KL E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLSQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  ++ LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  +   P +         +KS  Q             +      
Sbjct: 123 NLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQ------------QVDSARTM 170

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V      Q+ + I        D      N     D  I                      
Sbjct: 171 VIGHTGAQIFNSITSHAVPEPDGSDSEKNLFVMLDTAI---------------------- 208

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                A + T     ++          K    ++  L+ ++  RA LG     ++     
Sbjct: 209 -----AALKTPVEGNDVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSL 263

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++       +S  + V+ ++  +        ++ SY   T +Q +S+
Sbjct: 264 GSDRALGQKLQMSNLVDVDWNSVISSYVMQQAALQASYKTFTDMQGMSL 312


>gi|116694226|ref|YP_728437.1| flagellar hook-associated protein FlgL [Ralstonia eutropha H16]
 gi|113528725|emb|CAJ95072.1| flagellar hook-associated protein 3 [Ralstonia eutropha H16]
          Length = 409

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/408 (13%), Positives = 112/408 (27%), Gaps = 57/408 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +++S+++++            + + +++ TG+S           T  L   Q +    + 
Sbjct: 3   VASSTLYQQGLASMNYQQGSLLHIQQQLGTGRSILTPSDDPVGATRALGVSQAQAVNGQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             S       L+  +  L S+  + Q++   LV    G   +      A  L   Y   V
Sbjct: 63  ATSRKQANIALAAEENALQSVTTVTQNIQTLLVQAGNGTMSDADRGSLATALEGLYNQLV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDS---------------------------- 156
             AN  D  GQYLF G  S   P        +                            
Sbjct: 123 GLANSDDGNGQYLFGGTRSGSAPFTQSKGPGAYIGDNGQQLLQVDVARQMPAGNTGREVF 182

Query: 157 -------------LAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN--AQQMTDFIKQLE 201
                         A  +           N      G  ++V+     + QM   I  L 
Sbjct: 183 MSVTGGAGYVVKGNANNTGSATFGTVSTTNPSDPDYGLSMQVTFAANASGQMEYTITDLS 242

Query: 202 DKFSDDE---YWANNWSNAS------DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI 252
              +            S A         N+    KD + +   A  +  G      +  +
Sbjct: 243 AGTTPAPVVKGPIAYTSPAHIDVAGVSFNVTGDPKDGDTM-TMAPASEAGTDMFANLQTV 301

Query: 253 GTEFLSKNLTDGARN---VLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
                        R     +           L  ++  RA +G     ++       N++
Sbjct: 302 IDTLRQPTPDSSDRAHLGNVISTATRQFSNSLDNVLTVRASVGSRMNELDALDDVGSNRD 361

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 +S    ++   A  +       ++ +     ++Q +++  YL
Sbjct: 362 LTYSQTLSGLQDLDYAKAITEYYQRQTALQGAQQSFMQIQGMNLFKYL 409


>gi|326792654|ref|YP_004310475.1| flagellar hook-associated protein 3 [Clostridium lentocellum DSM
           5427]
 gi|326543418|gb|ADZ85277.1| flagellar hook-associated protein 3 [Clostridium lentocellum DSM
           5427]
          Length = 393

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 108/348 (31%), Gaps = 39/348 (11%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
               ++ +       +   +       +  ++  + +M KI++ +    V    G  +  
Sbjct: 46  AGRAIKLKVNVLETQQYQKNAKEARSWMEVTETSMDNMNKILESIRTKCVQASTGTLEEK 105

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPL--------------NGYFTK 154
              +    +   +E     AN+T  G+Y++SG  +SE  +                Y   
Sbjct: 106 DKAVIKTDIMQLWEQLQEEANVTYGGRYVYSGYKTSEPLMLNKDLTLEEDLLVEKEYTVS 165

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI-----KQLEDKFSDDEY 209
                 +   + +G     +     G    +   + +   DF        L+ + +  E 
Sbjct: 166 SGTTIAAGSILAKGSTVSKADRATLGITDAMLDADGKLGADFTVPTGGTTLKGELTLSEN 225

Query: 210 WA--------------NNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMF------V 249
                             ++  S   ++Y +     I V+         +++        
Sbjct: 226 SKLASGSTVTAGNINPKVYNQISGQEMRYEVGTGNTITVNTLGMDDTFNNLLQMMEEIVT 285

Query: 250 AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
            V  +      +T    + L    +  + + L+ I  + A LG     ++     L + N
Sbjct: 286 TVDSSLEAGSTITSDDLHNLFNDKIGEIDEVLADISTKTADLGSRMARLDYVDSRLTDNN 345

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 +S +  ++    + + ++       +   T+K+   ++ +YL
Sbjct: 346 ADYKELLSNTEDIDVEEVYVEFNSRYATYTAALQATSKVIMNTLADYL 393


>gi|323967024|gb|EGB62450.1| flagellar hook protein 3 [Escherichia coli M863]
 gi|327253482|gb|EGE65120.1| flagellar hook-associated protein 3 [Escherichia coli STEC_7v]
          Length = 317

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 118/348 (33%), Gaps = 40/348 (11%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGIRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
            AN TD  G+Y+F+G  +   P                     F E + + +   + ++ 
Sbjct: 124 LANTTDGNGRYIFAGYKTETAP---------------------FSEADGEYVGGAESIKQ 162

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
               ++ M   I    DK  D        S  S+   +     +E        N+  + D
Sbjct: 163 QVDASRSMV--IGHTGDKIFD--------SITSNAVAEPDGSASET-------NLFAMLD 205

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
               A + T                 K    ++  L+ ++  RA LG     +       
Sbjct: 206 SAIAA-LKTPVAESEADKETTAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLG 264

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 265 SDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|197335705|ref|YP_002156693.1| flagellar hook-associated protein 3 [Vibrio fischeri MJ11]
 gi|197317195|gb|ACH66642.1| flagellar hook-associated protein 3 [Vibrio fischeri MJ11]
          Length = 397

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/403 (13%), Positives = 130/403 (32%), Gaps = 61/403 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSIL---EWEQEKNHI 62
           IS+   ++ +                ++ +G+     L  G    + L      Q+K  +
Sbjct: 5   ISSFHNYQAVQNDISRQEAKVHHTSAQLASGKKL---LTAGDDPVAALYAQNLTQKKEEL 61

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            +   + +L   RL   +  +++ ++   D    ++ ++ G         +A  L+    
Sbjct: 62  RQYTDTITLARNRLERHEVAIANAEQFADDAKRSVMEMINGSLAPEDRYAHAQDLKGIAS 121

Query: 123 SFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           +F+   NM D  G YLFSG     +P   +F  +           Q  L+ +    +A  
Sbjct: 122 NFLNLTNMLDESGNYLFSGTKPKTQP---FFKSNDGTVAYAGDEYQRKLKVSGSIEVAVN 178

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN-- 239
                     ++ +     + +++  E      S A++ N       T  +  SA+ N  
Sbjct: 179 DAGSKLFT--EIKNPFGDYDPQYALQEGSELLLSQATNTNYTD--PATYEVSFSASANGQ 234

Query: 240 -------------------MRGIRD--------------------------IMFVAVIGT 254
                                GI+                           I       +
Sbjct: 235 YNYQLSKDGSVVKNAQFDPSEGIKYEGVDIQIRGQLKSGDVITLEPKKTISIFDSFKKAS 294

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
           E    ++ D +     +++          + + RA +G  +  ++++    Q+ +  +  
Sbjct: 295 ELALNDVADASTTAELQQVTDEFHAAFIHLSQARAEVGTRQNTLDQQEQQHQDFDLTLSK 354

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +S    ++   A  + +     ++ S     K++ +++ NY+
Sbjct: 355 SLSSIEDLDYAQAVIEFNENTRALQASQQAFGKVKDITLFNYV 397


>gi|323976544|gb|EGB71632.1| flagellar hook protein 3 [Escherichia coli TW10509]
          Length = 317

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 118/348 (33%), Gaps = 40/348 (11%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGIRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
            AN TD  G+Y+F+G  +   P                     F E + + +   + ++ 
Sbjct: 124 LANTTDGNGRYIFAGYKTETAP---------------------FSEADGEYVGGAESIKQ 162

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
               ++ M   I    DK  D        S  S+   +     +E        N+  + D
Sbjct: 163 QVDASRSMV--IGHTGDKIFD--------SITSNAVAEPDGSASET-------NLFAMLD 205

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
               A + T                 K    ++  L+ ++  RA LG     +       
Sbjct: 206 SAIAA-LKTPVAESEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLG 264

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 265 SDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|56413829|ref|YP_150904.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179701|ref|YP_216118.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161614592|ref|YP_001588557.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553028|ref|ZP_02346778.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168234110|ref|ZP_02659168.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168244783|ref|ZP_02669715.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168264023|ref|ZP_02685996.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168467137|ref|ZP_02700979.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822628|ref|ZP_02834628.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445556|ref|YP_002040438.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194450508|ref|YP_002045183.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469278|ref|ZP_03075262.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197248976|ref|YP_002146859.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197362752|ref|YP_002142389.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242414|ref|YP_002215953.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389316|ref|ZP_03215927.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204930742|ref|ZP_03221615.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207857308|ref|YP_002243959.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584312|ref|YP_002638110.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238910996|ref|ZP_04654833.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56128086|gb|AAV77592.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62127334|gb|AAX65037.1| flagellar biosynthesis; hook-filament junction protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161363956|gb|ABX67724.1| hypothetical protein SPAB_02342 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404219|gb|ACF64441.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408812|gb|ACF69031.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455642|gb|EDX44481.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195630416|gb|EDX49042.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094229|emb|CAR59734.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197212679|gb|ACH50076.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197936930|gb|ACH74263.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199601761|gb|EDZ00307.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320201|gb|EDZ05405.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205322419|gb|EDZ10258.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331930|gb|EDZ18694.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336402|gb|EDZ23166.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205341000|gb|EDZ27764.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347330|gb|EDZ33961.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709111|emb|CAR33444.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224468839|gb|ACN46669.1| flagellar hook-associated protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320086376|emb|CBY96149.1| Flagellin A Flagellin core protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322616554|gb|EFY13463.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620505|gb|EFY17369.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622499|gb|EFY19344.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629650|gb|EFY26425.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632630|gb|EFY29376.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636875|gb|EFY33578.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641587|gb|EFY38225.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646486|gb|EFY42996.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650023|gb|EFY46441.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653948|gb|EFY50271.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658480|gb|EFY54742.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663338|gb|EFY59540.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670072|gb|EFY66212.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674864|gb|EFY70955.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676666|gb|EFY72733.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682588|gb|EFY78607.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686659|gb|EFY82638.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195773|gb|EFZ80949.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198335|gb|EFZ83439.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204843|gb|EFZ89837.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209184|gb|EFZ94121.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213432|gb|EFZ98228.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217856|gb|EGA02571.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222144|gb|EGA06528.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224916|gb|EGA09174.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229658|gb|EGA13781.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232883|gb|EGA16979.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240618|gb|EGA24660.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242932|gb|EGA26953.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323250250|gb|EGA34139.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252624|gb|EGA36462.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258848|gb|EGA42501.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261037|gb|EGA44630.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266946|gb|EGA50431.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269987|gb|EGA53436.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623701|gb|EGE30046.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 317

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 113/349 (32%), Gaps = 40/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++E+          + +KL E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLSQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  ++ LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  +   P +         +KS  Q             +      
Sbjct: 123 NLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQ------------QVDSARTM 170

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V      Q+ + I        D      N     D  I                      
Sbjct: 171 VIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAI---------------------- 208

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                A + T     ++          K    ++  L+ ++  RA LG     ++     
Sbjct: 209 -----AALKTPVEGNDVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSL 263

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++       +S  + V+ ++  +        ++ SY   T +Q +S+
Sbjct: 264 GSDRALGQKLQMSNLVDVDWNSVISSYVMQQAALQASYKTFTDMQGMSL 312


>gi|188534163|ref|YP_001907960.1| Flagellar hook-associated protein 3 [Erwinia tasmaniensis Et1/99]
 gi|188029205|emb|CAO97077.1| Flagellar hook-associated protein 3 [Erwinia tasmaniensis Et1/99]
          Length = 321

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 113/349 (32%), Gaps = 36/349 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST  I+++     +  N   +K   EM TG   +            +   Q +   ++ 
Sbjct: 3   LSTGMIYDQQMQGIQSANSSWLKAGNEMTTGNRVNKPSDDPVAAAQAVVVSQAQAETSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    T+  ST +  L  +  ++      +V    G   +      A  L       +
Sbjct: 63  DTARIFATQSQSTEETTLKQVADVIISAQTTIVAAANGTLSDADRSSYATQLEGVRAQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y F+G  S + P     + ++                     +      
Sbjct: 123 NLANSTDGNGRYTFAGYQSDKAPFTTDASGNTTYTGG---------TVPITQKVDSSRTL 173

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V++   +Q+ D +     K  D +   +N  +  D  IK   +   G D S         
Sbjct: 174 VTNHTGKQVFDNLTSSATKEPDGKDGESNIFSILDTAIKSLKEPLSGADQS--------- 224

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                 +    K    +   L+ +   R+ +G + + ++     
Sbjct: 225 -----------------KIDLESANIAKTNRGLSNALNNVSSVRSEIGTNLQELSNLDSK 267

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             +    + T ++  IGV+   A +  +     ++ SY +  ++ KLS+
Sbjct: 268 SGDTTLNLKTQMNSLIGVDTAEAISSYTMQQAALKASYTVFQQMSKLSL 316


>gi|242310433|ref|ZP_04809588.1| flagellar hook-protein FlgL [Helicobacter pullorum MIT 98-5489]
 gi|239522831|gb|EEQ62697.1| flagellar hook-protein FlgL [Helicobacter pullorum MIT 98-5489]
          Length = 874

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 8/151 (5%)

Query: 61  HIAERLHSNSLVTKRLSTSQ---AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
           +I     S  L    L+ ++     LS +   + +    LV               A  L
Sbjct: 54  NITTLTQSKELANNALTFTKHTDTALSELASSMDNFKSKLVQGANDIHSETSRLAIAQDL 113

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
           +   + F++ AN +  G+++F G  ++ KP N   + +       +  L   L  N+   
Sbjct: 114 KSIRDHFLSIANTSIGGEFIFGGTATTTKPFNSDGSYNGN-----NATLNALLSSNNSLA 168

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDE 208
                 E+   +       I     KF+   
Sbjct: 169 YNITGYELFFGSDNDTNRVISTNIPKFNQSA 199


>gi|34556921|ref|NP_906736.1| flagellar hook-associated protein FlgL [Wolinella succinogenes DSM
           1740]
 gi|34482636|emb|CAE09636.1| FLAGELLIN B HOMOLOG (FLA) [Wolinella succinogenes]
          Length = 846

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 6/199 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+    S+  +       + +L      L  +M +G+   +G Q     +  L  + E+ 
Sbjct: 1   MRIGY-SSQYLTLARYQQSSQLQ--LNDLLTQMSSGRKIQFGYQDSTIYSQTLRLDYEEA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + +    ++        + + LS + K + +    L                A  L+  
Sbjct: 58  TLTQSKTLSTSAKSFSDNTDSALSELSKSMTNFTTKLNQAANQIHSATSLEALANDLQAI 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLN---GYFTKDSLAKKSFDQMLQGFLEENSKSL 177
            E  ++ AN +  GQY+FSG   + KP +    Y+  DS  +                 L
Sbjct: 118 KEHMLSIANTSIGGQYIFSGTAVTTKPFDSNGNYYGNDSSLEALLGSNNLLGYNITGAEL 177

Query: 178 LAGQHLEVSSMNAQQMTDF 196
             G+  + S +    + ++
Sbjct: 178 FGGKDSDKSRIIVTNVKNY 196


>gi|218549189|ref|YP_002382980.1| flagellar hook-associated protein FlgL [Escherichia fergusonii ATCC
           35469]
 gi|218356730|emb|CAQ89358.1| flagellar hook-filament junction protein [Escherichia fergusonii
           ATCC 35469]
 gi|324113878|gb|EGC07852.1| flagellar hook protein 3 [Escherichia fergusonii B253]
 gi|325497609|gb|EGC95468.1| flagellar hook-associated protein FlgL [Escherichia fergusonii
           ECD227]
          Length = 317

 Score = 58.6 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 115/350 (32%), Gaps = 42/350 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++++          + +K  E+M TG+            +  +   Q +    + 
Sbjct: 3   ISTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVINPSDDPIAASQAVVLSQAQAQNNQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  +  LS +   +Q+    +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEENVLSQVTTALQNAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  +   P +    + +  K+S  Q +                  
Sbjct: 123 NLANSTDGNGRYIFAGYKTEAAPFDQASGEYNGGKESITQQVDA------------SRSM 170

Query: 185 VSSMNAQQMTD-FIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           V      ++ D F      + +      N +               + +D +        
Sbjct: 171 VIGHTGDKIFDHFTSNAIPEPAGSTQETNLF---------------KMLDSAIGA----- 210

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                   + T              +  K    ++  L+ ++  RA LG     ++    
Sbjct: 211 --------LKTPVAENETEKEKAAGIIDKTNRGLKNSLNNVLTVRAELGTQLSELDALDS 262

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
              ++       +S  I V+ + A +        ++ SY   T +Q +S+
Sbjct: 263 LGSDRALGQTQQMSDLINVDWNAAISSYVMQQAALQASYKAFTDMQGMSL 312


>gi|225851147|ref|YP_002731381.1| flagellar hook-associated protein 3 [Persephonella marina EX-H1]
 gi|225646101|gb|ACO04287.1| flagellar hook-associated protein 3 [Persephonella marina EX-H1]
          Length = 321

 Score = 58.6 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 117/360 (32%), Gaps = 50/360 (13%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
            +   T   ++R+        KD  +  +E+ +G+               L +++  N I
Sbjct: 6   ISFFDTFIKYDRIR------EKDIERYTKELASGKKLLSPSDNTIDTVRSLRFKRLNNDI 59

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSY 121
                +  LV   L  +++ L ++    Q++   ++ ++  G  D     I    L    
Sbjct: 60  ETYNRNIDLVKGTLDVAESTLGNIVNAGQEVRVEIIRLMNTGVLDYEDAQILRDYLSSLR 119

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           +  +  AN++     +F G+ S   P +                +   +E N+       
Sbjct: 120 DYIINQANVSIGDSRIFGGVKSQIDPFDPVTGVYQGETVETTVPVAKGVELNTTFNGQSY 179

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
               ++     M D I ++                AS       +++     ++  V+ +
Sbjct: 180 LGVNTNTGKMAMVDAIDEIISIIDG----------ASASPPTRSLEEINTATINVTVDGK 229

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
              ++                          +L     GL  +++QR+ +G  E+ +  +
Sbjct: 230 NYGNV-------------------------TILEAFDIGLDKVMQQRSKIG--EQMVIAD 262

Query: 302 RVFLQNKNNIIDTY----ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              L+ +N+ +       ISK    +     ++L       E       + + LS+L ++
Sbjct: 263 N--LKVQNDTMRVNFSELISKLEDADYAGVISELEKSKTAYEALLASIAQNKDLSLLKFI 320


>gi|238764399|ref|ZP_04625349.1| Flagellar hook-associated protein 3 [Yersinia kristensenii ATCC
           33638]
 gi|238697425|gb|EEP90192.1| Flagellar hook-associated protein 3 [Yersinia kristensenii ATCC
           33638]
          Length = 360

 Score = 58.6 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 116/349 (33%), Gaps = 31/349 (8%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++            ++  +++ TG+            +  +   Q ++   + 
Sbjct: 37  LSTSMLYQQNMQGITNAQSLWMQSGQQLSTGKRVVNPSDDPMSASQAVMVSQAQSENNQY 96

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S   +  S     L+     +Q +   ++        ++     A  L+   +  V
Sbjct: 97  ALARSFARQSSSLETTVLAQATSTIQSIQSVIISAKSDILSDDDRASYATQLQGLKDQLV 156

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F G  S + P     T   +     D  ++  ++ N    +      
Sbjct: 157 NQANTTDGNGRYIFGGFQSDKPPFAVSKT-GEVTYVGGDVAIEQKVDANRSMTVGHTG-- 213

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
                          +    + +     N  +    + +  I +   ID   N     ++
Sbjct: 214 -------------DSVFMALTSNAKPEPNDVDGKPVDAEKNIFN--TIDTVLNALKTPMQ 258

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                        + +      N    K +  +   L+ ++  +A +G   + ++     
Sbjct: 259 ------------GATDEVKEQVNAAMDKGIRGMANSLNNVLSVQAGIGTQLQELDNLDSL 306

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            +++  I    +S  + V+ ++A +        ++ SY   T +Q LS+
Sbjct: 307 GEDRTLINKQRMSDLVDVDWNSAISSYVMQQAALQASYTTFTNMQGLSL 355


>gi|311280010|ref|YP_003942241.1| flagellar hook-associated protein 3 [Enterobacter cloacae SCF1]
 gi|308749205|gb|ADO48957.1| flagellar hook-associated protein 3 [Enterobacter cloacae SCF1]
          Length = 316

 Score = 58.6 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 115/352 (32%), Gaps = 47/352 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST  ++++            ++  E+M TG+  +         +  +   Q +   A+ 
Sbjct: 3   VSTLMMYQQNMNGITNSQSTWLQYGEQMSTGKRVNRPSDDPIAASQAVVLSQAQAQNAQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S  T+R+S  +  L+ +   +Q     +V   +G   ++     A  L+   +  +
Sbjct: 63  ASARSFATQRVSQEENVLTQVTTAIQSAQEKIVYAGDGTLSDDDRASLATDLQGIRDQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN---GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
             AN  D  G+Y+F+G  +   P +    Y    +  ++  D      +           
Sbjct: 123 NLANSQDGNGRYMFAGYKTDSAPFDANGNYTGGTTNVEQQVDSSRTMVIGH--------- 173

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I     K  D         +AS+ N+   +        +   N  
Sbjct: 174 -------TGDKIFDAITSNAVKEPDG--------SASETNVFSMLDSAIAALKTPVANDD 218

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                                  A      K    ++  L+ ++  RA +G     +++ 
Sbjct: 219 T-------------------AKAAAAAAIDKTNRGLRNSLNNVLSVRAEVGTQLNELDKL 259

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                ++       +S  + V+ +   +  +     ++ SY   + +Q +S+
Sbjct: 260 DALGDDRKLSQTQQMSDLVDVDWNATISNYTMQQAALQASYKTFSDMQGMSL 311


>gi|24374751|ref|NP_718794.1| flagellar hook-associated protein FlgL [Shewanella oneidensis MR-1]
 gi|24349415|gb|AAN56238.1|AE015761_8 flagellar hook-associated protein FlgL [Shewanella oneidensis MR-1]
          Length = 403

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 80/191 (41%), Gaps = 11/191 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEWEQEKN 60
           +ST+ +F +      +    + K+ E++ +G+       D    LG          Q   
Sbjct: 3   LSTAQLFNQSITSVLQKQTATSKVLEQLSSGKKVNTSGDDPVAALGID-----NLNQRNA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + + +      RL+ +++ L S + +   +   L+  + G   +++  + A  ++DS
Sbjct: 58  LVDQFMKNIDYANNRLAVTESKLGSAEDLTGSIREQLMRAVNGTLSDSERQMIADEMKDS 117

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
            +  ++ AN  D  G YLFSG ++ ++P     +       S D  ++  L ++  ++  
Sbjct: 118 LKELLSLANSKDESGNYLFSGFSTDKQPFAFDNSTPPKIVYSGDSGVRDSLVQSGVAIGT 177

Query: 180 GQHLEVSSMNA 190
               + + M A
Sbjct: 178 NIPGDQAFMKA 188


>gi|119775443|ref|YP_928183.1| flagellar hook-associated protein FlgL [Shewanella amazonensis
           SB2B]
 gi|119767943|gb|ABM00514.1| flagellar hook-associated protein FlgL [Shewanella amazonensis
           SB2B]
          Length = 401

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/408 (14%), Positives = 137/408 (33%), Gaps = 65/408 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEWEQEKN 60
           ISTS +F +      +   ++ KL E++ +G+       D    LG          Q++ 
Sbjct: 3   ISTSQMFTQNTNNILQKQTETAKLLEQLSSGKKVNTSGDDPVAALGID-----NLNQQQA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + L +       L  +++ L S +++V  +   ++  + G    ++  + A  +R S
Sbjct: 58  LVDQFLKNIDYAKNHLGIAESKLGSAEELVTGLREQILRGVNGGLSPSERQMIADEMRGS 117

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
            +  +  AN  D  G ++FSG  +  +P    F        S D  ++  +     ++  
Sbjct: 118 LQELLNVANTRDESGNFMFSGFKTDTEPFA--FDGAGNMVYSGDAGVRDAMISRGIAMGT 175

Query: 180 GQHLEVSSMN-------------AQQMTDF------IKQLEDKFSDDE--YWANNWS--- 215
               +++ M              + Q  DF      I        D     + +N S   
Sbjct: 176 NVPGDMAFMTSPNALGDYTVNYLSSQAGDFKVQSAAITNPAAHVEDTYTFNFIDNGSGGV 235

Query: 216 --------------------------NASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFV 249
                                     N  D  ++      + I ++    +     I   
Sbjct: 236 NLEVRDSANGLVTTVNNFDATNPVSFNGIDVKLEGTPAAGDSISLAPQAEVSIFDTINKA 295

Query: 250 AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
             +  +     +   A      ++L+    GL+ +   R+V G + K++         + 
Sbjct: 296 IALIED--DSRMNSPAGIAELAQLLNDTDSGLNQLSTARSVAGNNLKSLESYAGRHAEEQ 353

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  + +S    ++  TA  +       +     + +++  +S+ +YL
Sbjct: 354 VVNTSALSLLEDLDYATAITEFEKQQLALNAVSNVFSRVGSVSLFDYL 401


>gi|74317645|ref|YP_315385.1| flagellar hook-associated protein FlgL [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057140|gb|AAZ97580.1| flagellin, flagellar hook-associated protein 3 FlgL [Thiobacillus
           denitrificans ATCC 25259]
          Length = 300

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 8/188 (4%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST ++FE       EL  D VK  +++ TG+               LE  Q ++  ++ 
Sbjct: 3   ISTQTLFEAGAARLSELQSDMVKTQQQISTGRRVLTPADDPVAAARALEVTQSQSMNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L+  +  L+ + +++QD+   +V    G   + +    A  LR  +E  +
Sbjct: 63  GVNRDYAKSSLAAVEGSLTGVTELLQDVKTTIVAAGNGTLGDMERGYMATELRGRFEQLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLN-------GYFTKDSLAKKSFDQMLQGFLEENSKSL 177
             AN  D  G YLFSG  ++  P +        Y           D   Q  +  + +++
Sbjct: 123 GMANSRDAQGNYLFSGFQTATPPFSKNAGNAVTYNGDAGQRLMQVDTTRQLAVSHSGQAI 182

Query: 178 LAGQHLEV 185
             G   +V
Sbjct: 183 FQGGGQDV 190


>gi|300938648|ref|ZP_07153377.1| flagellar hook-associated protein 3 [Escherichia coli MS 21-1]
 gi|300456433|gb|EFK19926.1| flagellar hook-associated protein 3 [Escherichia coli MS 21-1]
          Length = 317

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 108/348 (31%), Gaps = 40/348 (11%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNSSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
            AN TD  G+Y+F+G  +   P +    K     +S  Q +                  V
Sbjct: 124 LANTTDGNGRYIFAGYKTESAPFSEADGKYEGGAESIKQQVDA------------SRSMV 171

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                 ++ D I        D      N     D  I                       
Sbjct: 172 IGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAI----------------------- 208

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
               A + T                 K    ++  L+ ++  RA LG     +       
Sbjct: 209 ----AALKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLG 264

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 265 SDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312


>gi|297544026|ref|YP_003676328.1| flagellar hook-associated protein 3 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841801|gb|ADH60317.1| flagellar hook-associated protein 3 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 297

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 36/125 (28%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             K    + TG+           V + L    +         +   V   L  +   L  
Sbjct: 23  LQKNQNMLSTGKKISRPSDDPVAVATSLRIRTDIARNDAYTKNADEVQSWLDMTDTALGQ 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           +  ++Q      V    G          A  +       +   N    G+Y+F+G  ++ 
Sbjct: 83  LGDLLQRTRELAVEGANGTLTQADMQKIAEEIEQLKAQMIQVGNTQYNGRYIFAGFKTTT 142

Query: 146 KPLNG 150
           +P + 
Sbjct: 143 QPFSE 147


>gi|16760060|ref|NP_455677.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142169|ref|NP_805511.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213424686|ref|ZP_03357451.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213865496|ref|ZP_03387615.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25299199|pir||AI0640 flagellar hook-associated protein 3 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502354|emb|CAD08308.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137799|gb|AAO69360.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 317

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 113/349 (32%), Gaps = 40/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++E+          + +KL E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLFQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  ++ LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  +   P +         +KS  Q             +      
Sbjct: 123 NLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQ------------QVDSARTM 170

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V      Q+ + I        D      N     D  I                      
Sbjct: 171 VIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAI---------------------- 208

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                A + T     ++          K    ++  L+ ++  RA LG     ++     
Sbjct: 209 -----AALKTPVEGNDVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSL 263

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++       +S  + V+ ++  +        ++ SY   T +Q +S+
Sbjct: 264 GSDRALGQKLQMSNLVDVDWNSVISSYVMQQAALQASYKTFTDMQGMSL 312


>gi|226944499|ref|YP_002799572.1| flagellar hook-associated protein FlgL [Azotobacter vinelandii DJ]
 gi|226719426|gb|ACO78597.1| flagellar hook-associated protein [Azotobacter vinelandii DJ]
          Length = 401

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/399 (13%), Positives = 121/399 (30%), Gaps = 47/399 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST ++FE+          + +K+ +++ +G+            +  +   Q +    + 
Sbjct: 3   ISTVTMFEQGLSSLVRQQSEYLKVGQQIASGKRVVNPSDDPQAASRAISVSQSQAVNQQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       LS  ++ L+S+   +      LV    G   +      A  ++  YES +
Sbjct: 63  DDARVSTRNALSQEESVLNSIADAIASAKTRLVQAGNGTLSDADRSSLASEIKGIYESLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAK--------KSFDQMLQGFLEENSKS 176
             AN TD  G+YLF G   S  P     T  ++A         +  D   Q    +N K 
Sbjct: 123 GQANATDGSGRYLFGGYQDSSPPFVKDNTSGAVAYQGDEGLILQQVDASRQMPSSDNGKQ 182

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSD--------DEYWANNWSNASDHNIKYRIKD 228
           +    H     +      +                      +  +++ A+D ++ Y    
Sbjct: 183 IFQSVHGSAGYLAQADAGNAGTVTFTGPYVSDSTAAGFGSGFTLDFAVATDGSVTYSSDG 242

Query: 229 TEG------------------------------IDVSANVNMRGIRDIMFVAVIGTEFLS 258
                                            ++ + N +    R +  +       + 
Sbjct: 243 GTTQVPYADGQSIEINGLSLTLEGTPADGDSIVVEKAQNADPDLFRTLENMIAALDTPVE 302

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            +                +   L  ++  RA +G     ++       N+       +S 
Sbjct: 303 TDADLARLQNTLSTSSRELDNALDSVLTVRASVGARLNELDVLDAVGDNRALNYKQTLSD 362

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            I ++ + A ++ S     ++ +      +  LS+ + L
Sbjct: 363 LIDLDYNEAISEYSLRQVGLQAAQKAFVDISSLSLFDLL 401


>gi|237752753|ref|ZP_04583233.1| flagellar hook-associated protein FlgL [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376242|gb|EEO26333.1| flagellar hook-associated protein FlgL [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 876

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 8/150 (5%)

Query: 61  HIAERLHSNSLVTKRLSTSQ---AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
           +I     S  L    L+ ++     LS + K + +    LV       +       A  L
Sbjct: 54  NINTLTQSKELANNALTFTKHTDTALSELAKSMDNFKTKLVQGANDIHNETSRLAIAKDL 113

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
           R   + F++ AN +  G+Y+F G  +++ P N      S    S   +L   L  N+   
Sbjct: 114 RAIRDHFLSIANTSIGGEYIFGGTATTKSPFN---ADGSYNGNS--DVLSALLGSNNSLP 168

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDD 207
                 E+   + +     I     KF+  
Sbjct: 169 YNITGSELFFGSDRDTNRVISTNVPKFNQS 198



 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 20/215 (9%)

Query: 154 KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSM--NAQQMTDFIKQLEDKFSDDEYWA 211
            D   K +++ ML       + +L     L++  +     +M          FS  +  +
Sbjct: 671 NDPANKSAYEAMLGNAKHNVNITLDVNGALQIKDLHRTPTRME---------FSLYDSTS 721

Query: 212 NNWS-NASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF--------LSKNLT 262
           +N++ NA       R   T   + +   +   I     +  +             +    
Sbjct: 722 DNYTLNAQGRIDGSRPALTFQANSAVVADDPHINFFQQIDQMIEALEVGSYRPGGTNTYG 781

Query: 263 DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322
           D  RN   +  +         + +     G             +       T  S +I  
Sbjct: 782 DAMRNPGVQNAILAFDHLADHVNKVHTKNGSQGNAFEYSIERTEVLIVQAKTLRSDTIDT 841

Query: 323 EQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   A+ Q STL    +      +K+ +LS++NYL
Sbjct: 842 DFAEAYLQFSTLSMGYQAMLSSVSKITQLSLVNYL 876


>gi|21242720|ref|NP_642302.1| flagellar hook-associated protein FlgL [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108195|gb|AAM36838.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 401

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 118/398 (29%), Gaps = 44/398 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  ISTS ++ +             +L  ++ +GQ             + +  ++    
Sbjct: 1   MTDRISTSMMYSQSVASMGAKQSRLNQLESQLSSGQRLVTAKDDPVAAGTAVGLDRALAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I     + + V  RL   +  LS     +  +    V         +     A  L    
Sbjct: 61  ITRFGENANNVQNRLGLQENALSQAGDKMARVTELAVQASNSSLSPDDRKAIASELTALR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKS 176
           ES V+ AN TD  G+YLF G      P               +K  +     F+ +    
Sbjct: 121 ESMVSLANSTDGTGRYLFGGTADGSAPFIKSNGSVTYNGDQTQKQVEVAPDTFVSDTLPG 180

Query: 177 LL------AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSN----ASDH------ 220
                    G     +  NA      +     + +    W     +    A+D       
Sbjct: 181 SEIFMRIRTGDGTVDAHANAANTGTGLLLDFSRDASTGSWNGGSYSVQFTAADTYEVRDS 240

Query: 221 -------------------NIKYRIKDTEGIDVSANVNMRGIRDIMFVA-VIGTEFLSKN 260
                               ++ RI     +  S  +   G +D+      +     S  
Sbjct: 241 TNTVVGTGTYKEGEDINAAGVRMRISGAPAVGDSFQIGASGTKDVFSTIDDLVGALNSDT 300

Query: 261 LTDGARNVLTKK---MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
           LT   +  +       +  + Q  S +I+ RA  G     I+     L++    + T +S
Sbjct: 301 LTAPQKAAMINTLQSSMRDITQASSKMIDARASGGAQLSAIDNANSLLESNEVTLKTSLS 360

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
               ++  +A  Q       ++ +  I  ++Q  S+ N
Sbjct: 361 SIRDLDYASAIGQYQLEKASLQAAQTILQQMQSSSLFN 398


>gi|146341928|ref|YP_001206976.1| putative flagellin and related hook-associated protein
           [Bradyrhizobium sp. ORS278]
 gi|146194734|emb|CAL78759.1| Conserved hypothetical protein; putative Flagellin and related
           hook-associated protein [Bradyrhizobium sp. ORS278]
          Length = 623

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 87/270 (32%), Gaps = 12/270 (4%)

Query: 93  MVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYF 152
            V    +       +    IN      +  S +   + T +   +  G  +        F
Sbjct: 361 TVNGQTLSFVTSGASGNTQINITDSVQTLLSKIDALSGTSKASTVSGGAITLRTDNAASF 420

Query: 153 TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN 212
           +  S    +F     GF    +      +       +A  + +        ++ +     
Sbjct: 421 SISSSNAGAF--AALGFSGTVTAPTPPLRVSGTPLGSATTLVNGSTNTISWYTGNSGPGT 478

Query: 213 NWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARN---VL 269
             ++AS      RI   + I   A  N   IR+++    +     +      A      L
Sbjct: 479 ARASAS-----IRIDTAQSIQFGAQANEFAIRNLVQQTAVYAAVNTPPTGANAGQQIGAL 533

Query: 270 TKKMLSTVQQ--GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
           ++++   +    G   I + +     ++  + +           + + + ++ G+ Q   
Sbjct: 534 SERIAYNLTSQLGQQSISDIQTDFANAQTTMKDATARQTQAKAAMQSLVDQTEGISQQEV 593

Query: 328 HAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +Q+  L   ++ SY  T  L +LS++ YL
Sbjct: 594 ASQILQLQTNLQASYQTTAMLAQLSLVKYL 623



 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 55/180 (30%), Gaps = 3/180 (1%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
              + +  + ++     L  ++ +G  +     +G      +    + ++I+    + + 
Sbjct: 10  TSLLGLSVRNISNQLADLSTQLSSGNKASNYAGMGPDEGFAIAARAQLSNISAFTLTMTH 69

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
           V   +      L S+ KI   +        +  T   +          +  + V   N  
Sbjct: 70  VNTVIGAMNTSLQSLSKIGDQVQSGASATPQNLTSTGQ-TTGQQTASSNLSAIVGILNTQ 128

Query: 132 DEGQYLFSGINSSEKPL--NGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN 189
              +++FSG  +    +         +  +    Q++    + +      G+    +S  
Sbjct: 129 VGDRFIFSGSATDRPAIASADEILNGTATQAGLKQVIAERRQADLGLNGLGRLNLSASAT 188


>gi|82702460|ref|YP_412026.1| flagellar hook-associated protein FlgL [Nitrosospira multiformis
           ATCC 25196]
 gi|82410525|gb|ABB74634.1| Flagellin-like protein [Nitrosospira multiformis ATCC 25196]
          Length = 311

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 117/356 (32%), Gaps = 52/356 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE- 64
           +S+++ +E             +K  E++ TG+S        A     L+   E +     
Sbjct: 3   VSSNTSYEAGLAAIHRQQSAQMKTFEQISTGRSVLTPSANPAAYVRALDV-AEADSANSQ 61

Query: 65  --RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
                 N + +  LS  +  L  +  ++Q      V    G  +++     A  LR S  
Sbjct: 62  YALNRQNGMAS--LSMLEDTLGGITALLQRAQELTVAAGNGTLNDSGRETIATELRTSLG 119

Query: 123 SFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
             +  +N  D  GQYLFSG  SS KP        S  +   D+ L+     +S+ L    
Sbjct: 120 ELLGLSNRKDASGQYLFSGYQSSTKPFED---TGSGVQYVGDEGLRMIQASSSRQLAV-- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                                             N S   +  RI    G   S      
Sbjct: 175 ----------------------------------NESGREVFERIPAAGGSYHSM----- 195

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
             + +  +A +    ++      A           +   L  +++ +A +G   K I+  
Sbjct: 196 -FKTLSDLADLLETPVTDPAGKTALATGLGSAQVNLSNALDNVLKVQASVGTRMKEIDAL 254

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ N      +S+   V+   A + L+     +E +     K+Q LS+ +Y+
Sbjct: 255 NERGEDLNIQYKQQLSELRDVDYVEAISDLTQQRTYLEATQKAFLKVQSLSLFDYI 310


>gi|310659649|ref|YP_003937370.1| flagellin and related hook-associated proteins [Clostridium
           sticklandii DSM 519]
 gi|308826427|emb|CBH22465.1| Flagellin and related hook-associated proteins [Clostridium
           sticklandii]
          Length = 304

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 97/311 (31%), Gaps = 53/311 (17%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
           RV   L  E + N   E   +       L  ++  ++ +  + Q +    V    G    
Sbjct: 45  RVARTLRLESDINMSLEYKENIQAAKSWLEKTETAMNEITSVYQRIRELGVQGANGILKE 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ 167
                 A  +++     +   N T  G+ +F+G  +  K L+      S    + D ++ 
Sbjct: 105 EDTQKVAQEIKELKNHLIQVGNDTYMGRQIFTGFKTDIKLLDS-----SGNYNTADGLVL 159

Query: 168 GFLEENSKSLLAGQHLEVS-SMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI 226
             L         G   ++S ++   ++   +   + K  DD                   
Sbjct: 160 ATLPSELIEYKVGDSQQISVNITGDRIYGPLVGGKPKLFDDID----------------- 202

Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIE 286
                                    + T   + N  D          L+ +   L  +++
Sbjct: 203 ------------------------KLLTALGTANHEDA------SASLADMDNQLKTLLQ 232

Query: 287 QRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITT 346
            R  +G     I+     + + +  +   +SK+   +      QL T     + S  +T 
Sbjct: 233 VRGEVGAKVNMIDIMSERMTDVSINLKELLSKTKDTDVAETQIQLITAEAVYKASLSVTA 292

Query: 347 KLQKLSILNYL 357
           ++ + +++++L
Sbjct: 293 RIIQPTLVDFL 303


>gi|294665572|ref|ZP_06730853.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292604670|gb|EFF48040.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 401

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 118/398 (29%), Gaps = 44/398 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  ISTS ++ +             +L  ++ +GQ             + +  ++    
Sbjct: 1   MTDRISTSMMYSQSVASMGAKQSRLNQLESQLSSGQRLVTAKDDPVAAGTAVGLDRALAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I     + + V  RL   +  LS     +  +    V         +     A  L    
Sbjct: 61  ITRFGENANNVQNRLGLQENALSQAGDKMARVTELAVQASNSSLSPDDRKAIASELTALR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKS 176
           ES V+ AN TD  G+YLF G      P               +K  +     F+ +    
Sbjct: 121 ESMVSLANSTDGTGRYLFGGTADGSAPFIKSNGSVTYNGDQTQKQVEVAPDTFVSDTLPG 180

Query: 177 LL------AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSN----ASDH------ 220
                    G     +  NA      +     + +    W     +    A+D       
Sbjct: 181 SEIFMRIRTGDGTVDAHANAANTGTGLLLDFSRDASTGSWNGGSYSVQFTAADTYEVRDS 240

Query: 221 -------------------NIKYRIKDTEGIDVSANVNMRGIRDIMFVA-VIGTEFLSKN 260
                               ++ RI     +  S  +   G +D+      +     S  
Sbjct: 241 TNTVVGTGTYKEGEDINAAGVRMRISGAPAVGDSFQIGASGTKDVFSTIDDLVGALNSDT 300

Query: 261 LTDGARNVLTKK---MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
           LT   +  +       +  + Q  S +I+ RA  G     I+     L++    + T +S
Sbjct: 301 LTAPQKAAMINTLQSSMRDITQASSKMIDARASGGAQLSAIDNANSLLESNEVTLKTSLS 360

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
               ++  +A  Q       ++ +  I  ++Q  S+ N
Sbjct: 361 SIRDLDYASAIGQYQLEKASLQAAQTIFQQMQSSSLFN 398


>gi|78047579|ref|YP_363754.1| flagellar hook-associated protein FlgL [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927968|ref|ZP_08189189.1| flagellar hook-associated protein 3 [Xanthomonas perforans 91-118]
 gi|78036009|emb|CAJ23700.1| flagellin and related hook-associated proteins [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325541653|gb|EGD13174.1| flagellar hook-associated protein 3 [Xanthomonas perforans 91-118]
          Length = 401

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 118/398 (29%), Gaps = 44/398 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  ISTS ++ +             +L  ++ +GQ             + +  ++    
Sbjct: 1   MTDRISTSMMYSQSVASMGAKQSRLNQLESQLSSGQRLVTAKDDPVAAGTAVGLDRALAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I     + + V  RL   +  LS     +  +    V         +     A  L    
Sbjct: 61  ITRFGENANNVQNRLGLQENALSQAGDKMARVTELAVQASNSSLSPDDRKAIASELTALR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKS 176
           ES V+ AN TD  G+YLF G      P               +K  +     F+ +    
Sbjct: 121 ESMVSLANSTDGTGRYLFGGTADGSAPFIKSNGSVTYNGDQTQKQVEVAPDTFVSDALPG 180

Query: 177 LL------AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSN----ASDH------ 220
                    G     +  NA      +     + +    W     +    A+D       
Sbjct: 181 SEIFMRIRTGDGTVDAHANAANTGTGLLLDFSRDASTGSWNGGSYSVQFTAADTYEVRDS 240

Query: 221 -------------------NIKYRIKDTEGIDVSANVNMRGIRDIMFVA-VIGTEFLSKN 260
                               ++ RI     +  S  +   G +D+      +     S  
Sbjct: 241 TNTVVGTGTYKEGEDINAAGVRMRISGAPAVGDSFQIGASGTKDVFSTIGDLVGALNSDT 300

Query: 261 LTDGARNVLTKK---MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
           LT   +  +       +  + Q  S +I+ RA  G     I+     L++    + T +S
Sbjct: 301 LTAPQKTAMINTLQSSMRDITQASSKMIDARASGGAQLSAIDNANALLESNEVTLKTSLS 360

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
               ++  +A  Q       ++ +  I  ++Q  S+ N
Sbjct: 361 SIRDLDYASAIGQYQLEKASLQAAQTIFQQMQSSSLFN 398


>gi|168237267|ref|ZP_02662325.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736765|ref|YP_002114183.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712267|gb|ACF91488.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289761|gb|EDY29122.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 317

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 113/349 (32%), Gaps = 40/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++E+          + +KL E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLSQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  ++ LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  +   P +         +KS  Q             +      
Sbjct: 123 NLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQ------------QVDSARTM 170

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V      Q+ + I        D      N     D  I                      
Sbjct: 171 VIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAI---------------------- 208

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                A + T     ++          K    ++  L+ ++  RA LG     ++     
Sbjct: 209 -----AALKTPVEGNDVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSL 263

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++       +S  + V+ ++  +        ++ SY   T +Q +S+
Sbjct: 264 GSDRALEQKLQMSNLVDVDWNSVISSYVMQQAALQASYKTFTDMQGMSL 312


>gi|294624308|ref|ZP_06703011.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292601390|gb|EFF45424.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 401

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 118/398 (29%), Gaps = 44/398 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  ISTS ++ +             +L  ++ +GQ             + +  ++    
Sbjct: 1   MTDRISTSMMYSQSVASMGAKQSRLNQLESQLSSGQRLVTAKDDPVAAGTAVGLDRALAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I     + + V  RL   +  LS     +  +    V         +     A  L    
Sbjct: 61  ITRFGENANNVQNRLGLQENALSQAGDKMARVTELAVQASNSSLSPDDRKAIASELTALR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKS 176
           ES V+ AN TD  G+YLF G      P               +K  +     F+ +    
Sbjct: 121 ESMVSLANSTDGTGRYLFGGTADGNAPFIKSNGSVTYNGDQTQKQVEVAPDTFVSDTLPG 180

Query: 177 LL------AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSN----ASDH------ 220
                    G     +  NA      +     + +    W     +    A+D       
Sbjct: 181 SEIFMRIRTGDGTVDAHANAANTGTGLLLDFSRDASTGSWNGGSYSVQFTAADTYEVRDS 240

Query: 221 -------------------NIKYRIKDTEGIDVSANVNMRGIRDIMFVA-VIGTEFLSKN 260
                               ++ RI     +  S  +   G +D+      +     S  
Sbjct: 241 TNTVVGTGTYKEGEDINAAGVRMRISGAPAVGDSFQIGASGTKDVFSTIDDLVGALNSDT 300

Query: 261 LTDGARNVLTKK---MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
           LT   +  +       +  + Q  S +I+ RA  G     I+     L++    + T +S
Sbjct: 301 LTAPQKAAMINTLQSSMRDITQASSKMIDARASGGAQLSAIDNANSLLESNEVTLKTSLS 360

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
               ++  +A  Q       ++ +  I  ++Q  S+ N
Sbjct: 361 SIRDLDYASAIGQYQLEKASLQAAQTIFQQMQSSSLFN 398


>gi|166712055|ref|ZP_02243262.1| flagellar hook-associated protein FlgL [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 401

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/398 (14%), Positives = 118/398 (29%), Gaps = 44/398 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  ISTS ++ +             ++  ++ +GQ             + +  ++    
Sbjct: 1   MTDRISTSMMYSQSVASMGAKQARLNQIEAQLASGQRLVTAKDDPVAAGTAVGLDRALAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I     + + V  RL   +  LS     +  +    V         +     A  L    
Sbjct: 61  ITRFGENANNVQNRLGLQENALSQAGDKMARVTELAVQANNSSLSPDDRKAIAAELTALR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKS 176
           +S V+ AN TD  G+YLF G      P               +K  +     F+ +    
Sbjct: 121 DSMVSLANSTDGTGRYLFGGTADGSAPFIKSSGNVTYNGDQTQKQVEVAPDTFVSDTLPG 180

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWS-NASDHNIKYRIKDTEGIDVS 235
                 +           +          D     +  S N + +++++   +T  +  S
Sbjct: 181 SEIFMRIRTGDGTVDAHANAANTGTGLLLDFSRDTSTGSWNGASYSVQFTAANTYEVRDS 240

Query: 236 ANV-------------NMRGIRDIMFVAV----------------------IGTEFLSKN 260
            N              N  G+R  +  A                       +     S  
Sbjct: 241 TNAVVSTGTYKEGQDINAAGVRMRISGAPAVGDSFQIGASGSKDVFSTIDDMVGALNSDT 300

Query: 261 LTDGARNVLTKK---MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
           LT   +  +       +  + Q  S +I+ RA  G     I+     L++    + T +S
Sbjct: 301 LTAPQKASMINTLQSSMRDIAQASSKMIDARASGGAQLSAIDNANSLLESNEVTLKTTLS 360

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
               ++  +A  Q       ++ +  I  ++Q  S+ N
Sbjct: 361 SIRDLDYASAIGQYQLEKASLQAAQTIFQQMQSSSLFN 398


>gi|205353080|ref|YP_002226881.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272861|emb|CAR37788.1| flagellar hook-associated protein 3 [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326628159|gb|EGE34502.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 317

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 113/349 (32%), Gaps = 40/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++E+          + +KL E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLSQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  ++ LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  +   P +         +KS  Q             +      
Sbjct: 123 NLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQ------------QVDSARTM 170

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V      Q+ + I        D      N     D  I                      
Sbjct: 171 VIGHTGVQIFNSITSNAVPEPDGSDSEKNLFVMLDTAI---------------------- 208

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                A + T     ++          K    ++  L+ ++  RA LG     ++     
Sbjct: 209 -----AALKTPVEGNDVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSL 263

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++       +S  + V+ ++  +        ++ SY   T +Q +S+
Sbjct: 264 GSDRALGQKLQMSNLVDVDWNSVISSYVMQQAALQASYKTFTDMQGMSL 312


>gi|46906957|ref|YP_013346.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226223337|ref|YP_002757444.1| flagellar hook-associated protein 3 FlgL [Listeria monocytogenes
           Clip81459]
 gi|254932014|ref|ZP_05265373.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           HPB2262]
 gi|290894003|ref|ZP_06556978.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           J2-071]
 gi|46880223|gb|AAT03523.1| putative flagellar hook-associated protein FlgL [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|225875799|emb|CAS04502.1| Putative flagellar hook-associated protein 3 FlgL [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|290556449|gb|EFD89988.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           J2-071]
 gi|293583566|gb|EFF95598.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           HPB2262]
 gi|332311131|gb|EGJ24226.1| Flagellar hook-associated protein 3 [Listeria monocytogenes str.
           Scott A]
          Length = 291

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 64/150 (42%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+     +      ++ +  K   ++ +G+  +   +       IL +    + +   
Sbjct: 3   ISTNQQANSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPGATAQILSYNHVLSQLNRE 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+T++  LSSM   +  +   ++  + G +D +    +A  ++   +  +
Sbjct: 63  KTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTSDKDNMSQSAEEIKGLLDVLI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
           + AN  D+G+Y+FSG ++S KP     T  
Sbjct: 123 SVANSEDDGRYVFSGSSTSVKPFTTDKTTG 152



 Score = 36.2 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                 F+ D+       N +  N K+R+  T+ ++V    +   + D+        + +
Sbjct: 139 STSVKPFTTDKTTGEIIYNGTTENKKFRV--TDTLEVEVFHDGSAMTDVFNNIQKIVDAM 196

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
                  A + L      T  + +  I      +G  +  +      L +K        S
Sbjct: 197 KTG-DKDALSAL----QETNSKNIEIITNSMTNIGGQKNGVAAYDNVLSSKIVDFSERKS 251

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               V    A + L+      + +   +  +QKLSILNY+
Sbjct: 252 NVEEVNMPEAVSNLNKTSIAYQAALQSSVMVQKLSILNYM 291


>gi|313610101|gb|EFR85426.1| flagellar hook-associated protein 3 [Listeria monocytogenes FSL
           F2-208]
          Length = 291

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 64/150 (42%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+     +      ++ +  K   ++ +G+  +   +       IL +    + +   
Sbjct: 3   ISTNQQANSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPGATAQILSYNHVLSQLNRE 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+T++  LSSM   +  +   ++  + G +D +    +A  ++   +  +
Sbjct: 63  KTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTSDKDNMSQSAEEIKGLLDVLI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
           + AN  D+G+Y+FSG ++S KP     T  
Sbjct: 123 SVANSEDDGRYVFSGSSTSVKPFTTDKTTG 152


>gi|16799789|ref|NP_470057.1| flagellar hook-associated protein FlgL [Listeria innocua Clip11262]
 gi|16413166|emb|CAC95946.1| lin0714 [Listeria innocua Clip11262]
 gi|313620049|gb|EFR91564.1| flagellar hook-associated protein 3 [Listeria innocua FSL S4-378]
 gi|313624690|gb|EFR94647.1| flagellar hook-associated protein 3 [Listeria innocua FSL J1-023]
          Length = 291

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 64/150 (42%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+     +      ++ +  K   ++ +G+  +   +       IL +    + +   
Sbjct: 3   ISTNQQANSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPGATAQILSYNHVLSQLNRE 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+T++  LSSM   +  +   ++  + G +D +    +A  ++   +  +
Sbjct: 63  KTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTSDKDNMSQSAEEIKGLLDVLI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
           + AN  D+G+Y+FSG ++S KP     T  
Sbjct: 123 SVANSEDDGRYVFSGSSTSVKPFTTDKTTG 152



 Score = 37.4 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                 F+ D+       N +  N K+R+  T+ ++V    +   + D+        + +
Sbjct: 139 STSVKPFTTDKTTGEIIYNGTTENKKFRV--TDTLEVEVFHDGSAMTDVFNNIQKIVDAM 196

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
                  A + L      T  + +  I      +G  +  +      L +K        S
Sbjct: 197 KSG-DKDALSAL----QETNSKNIEIITNSMTNIGGQKNGVTAYDNVLSSKIVDFSERKS 251

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               V    A + L+      + +   +  +QKLSILNY+
Sbjct: 252 NVEEVNMPEAVSNLNKTSIAYQAALQSSVMVQKLSILNYM 291


>gi|47091668|ref|ZP_00229464.1| flagellar hook-associated protein FlgL, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|217965196|ref|YP_002350874.1| flagellar hook-associated protein 3 [Listeria monocytogenes HCC23]
 gi|254824014|ref|ZP_05229015.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           J1-194]
 gi|254853090|ref|ZP_05242438.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           R2-503]
 gi|255521216|ref|ZP_05388453.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           J1-175]
 gi|300764518|ref|ZP_07074511.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           N1-017]
 gi|47019987|gb|EAL10724.1| flagellar hook-associated protein FlgL, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|217334466|gb|ACK40260.1| flagellar hook-associated protein 3 [Listeria monocytogenes HCC23]
 gi|258606439|gb|EEW19047.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           R2-503]
 gi|293593242|gb|EFG01003.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           J1-194]
 gi|300514872|gb|EFK41926.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           N1-017]
 gi|307570245|emb|CAR83424.1| flagellar hook-associated protein 3 [Listeria monocytogenes L99]
 gi|328467271|gb|EGF38351.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           1816]
          Length = 291

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 64/150 (42%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+     +      ++ +  K   ++ +G+  +   +       IL +    + +   
Sbjct: 3   ISTNQQANSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPGATAQILSYNHVLSQLNRE 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+T++  LSSM   +  +   ++  + G +D +    +A  ++   +  +
Sbjct: 63  KTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTSDKDNMSQSAEEIKGLLDVLI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
           + AN  D+G+Y+FSG ++S KP     T  
Sbjct: 123 SVANSEDDGRYVFSGSSTSVKPFTTDKTTG 152



 Score = 37.0 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                 F+ D+       N +  N K+R+  T+ ++V    +   + D+        + +
Sbjct: 139 STSVKPFTTDKTTGEIIYNGTTENKKFRV--TDTLEVEVFHDGSAMTDVFNNIQKIVDAM 196

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
                  A + L      T  + +  I      +G  +  +      L +K        S
Sbjct: 197 KTG-DKDALSAL----QETNSKNIEIITNSMTNIGGQKNGVTAYDNVLSSKIVDFSERKS 251

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               V    A + L+      + +   +  +QKLSILNY+
Sbjct: 252 NVEEVNMPEAVSNLNKTSIAYQAALQSSVMVQKLSILNYM 291


>gi|284041492|ref|YP_003391832.1| flagellar hook-associated protein 3 [Conexibacter woesei DSM 14684]
 gi|283945713|gb|ADB48457.1| flagellar hook-associated protein 3 [Conexibacter woesei DSM 14684]
          Length = 301

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 104/355 (29%), Gaps = 67/355 (18%)

Query: 10  SIFERMNILTKELN---KDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           +         ++L        +L  +M +G+               L    E   + +  
Sbjct: 6   TAQMTARTTVRDLQGDLAQLSQLQRKMSSGKEITKPSDDPYGTGRALGLHGEVAGLQQYQ 65

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            +    T  L+ S   L  +   +  +   L+ +             A  +    E+   
Sbjct: 66  KNVDDGTAWLNASDTALGKIGDAINRVRELLIRVGTDSAGQAARDAAASEVDQLIETIKQ 125

Query: 127 FANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS 186
            AN+   G+Y+F+G  +  +P   Y                G  +   + +  G  L+V+
Sbjct: 126 EANIQYAGRYVFAGTATDRQP---YQLLGP-------DTFNGNTDRIQREIGPGVELDVN 175

Query: 187 SMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI 246
           +         I  L            N   A D+ +                    +RDI
Sbjct: 176 TD--------ISGLFG----------NGQAAGDNRLL-----------------DTLRDI 200

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
                        N+  G  + L    ++ +   +  +   RA +G     +      L 
Sbjct: 201 A-----------DNMRAGRGDDLRGTDIARLDANVDVLNGIRADVGARTNRMEIADGRL- 248

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTK----LQKLSILNYL 357
             +++ +  I     VE       L     + + +Y +  +    + + S++++L
Sbjct: 249 --SSLEENSIELLSKVEDADTVKTLIEYTTQ-QAAYNMALRAGSNVVQNSLMDFL 300


>gi|121535556|ref|ZP_01667364.1| flagellar hook-associated protein 3 [Thermosinus carboxydivorans
           Nor1]
 gi|121305884|gb|EAX46818.1| flagellar hook-associated protein 3 [Thermosinus carboxydivorans
           Nor1]
          Length = 323

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 108/355 (30%), Gaps = 36/355 (10%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
           T  I + +    +N   +    +     E++  G++         +    L +       
Sbjct: 4   TNNIISYNFLNSLNKALER-QNEI---QEQLADGKAIHRPSDDPIKTIRSLRFNTNLAMN 59

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            +   +       L T+   LS +  IV      L I   G      F   A  +    +
Sbjct: 60  EQFTQNVKDALSWLETTDGALSDLSSIVIRA-KELTIEAVGPNPTEAFAAIAQEINGLID 118

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
             V  AN     +Y+F+G      P          +    +     +             
Sbjct: 119 HAVQVANTKIGDRYIFAGQKDKTTPFERRMVDPDPSVTGDEFEAVVYSG----------- 167

Query: 183 LEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242
                +NA  M     ++     + +  + N + A    +    ++ + I ++     + 
Sbjct: 168 ----DINAISM-----RIYPGAINPQQDSVNVTGADVFGLTSVKENGQTIYIA-----KA 213

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
              ++    I  E    N        L+ + ++ + +  + I+  +  +G         +
Sbjct: 214 FDQLLK---IKAELEKPNPD---VQWLSNQGMAWIDEIHTRILNAQTKIGTRMSMYEMAQ 267

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             L+  N  I   IS +  ++   A     T  N    +  +  ++   S++++L
Sbjct: 268 NMLEQDNTTITGDISANEDLDMPKAIIDFKTSENVYRSALAVGARIMPASLVDFL 322


>gi|2443634|gb|AAC33159.1| hook associated protein [Vibrio cholerae]
          Length = 397

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 127/407 (31%), Gaps = 69/407 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +    +      ++ +G+     SD  L        I    Q++  
Sbjct: 5   ISSFHNYQAVQNDIRRQESEVFNNQAQLASGKKLLSASDNPLA----THYIQNVGQQEEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + L +  LV  RL   +  +S+ ++        ++ ++ G          A +L++  
Sbjct: 61  LRQYLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+  AN+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 NNFINLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGDDYQRKMKISNSLEIPFNNP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-----SMNAQQMTDFIKQLEDKFSDDEY 209
            S            +    +    +   LE +        A     F+   E K  +   
Sbjct: 181 GSKVFMEIPNPFGSYEPNYALQEGSELLLERAVNLNPDDTASYRVTFVDMPEGK--NGYQ 238

Query: 210 WANNWSNAS---------------DHNIKYRIKDTEGID----VSANVNMRGIRDIMFVA 250
              N S                  +  +K +I   + I+     + +V     RD +  A
Sbjct: 239 LERNGSVVQAGEFDAKTGIQFEELNIQVKGQISKGDAIELTPRTTFSVFDT-FRDAIRYA 297

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
                    +++D +      +++         + + R  +G     ++ +    ++   
Sbjct: 298 -------EGSVSDASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKI 350

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    S    ++   A  + +     +E S     K + L++ NY+
Sbjct: 351 SLAKSKSTFEDLDYAEAVIEFNENSRALEASQKAFGKTKDLTLFNYI 397


>gi|297580836|ref|ZP_06942761.1| flagellar hook-associated protein FlgL [Vibrio cholerae RC385]
 gi|297534662|gb|EFH73498.1| flagellar hook-associated protein FlgL [Vibrio cholerae RC385]
          Length = 397

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/407 (13%), Positives = 126/407 (30%), Gaps = 69/407 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q++  
Sbjct: 5   ISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLA----THYIQNVGQQEEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + L +  LV  RL   +  +S+ ++        ++ ++ G          A +L++  
Sbjct: 61  LRQYLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+  AN+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 NNFINLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGDDYQRKMKISNSLEIPFNNP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLE-----VSSMNAQQMTDFIKQLEDKFSDDEY 209
            S            +    +    +   LE      S   A     F+   E K  +   
Sbjct: 181 GSKVFMEIPNPFGSYEPNYALQEGSELLLERAVNLNSDDTASYRVTFVDMPEGK--NGYQ 238

Query: 210 WANNWSNAS---------------DHNIKYRIKDTEGID----VSANVNMRGIRDIMFVA 250
              N S                  +  +K +I   + I+     + +V     RD +  A
Sbjct: 239 LERNGSVVQAGEFDAKTGIQFEELNIQVKGQISKGDTIELTPRTTFSVFDT-FRDAIRYA 297

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
                    +++D +      +++         + + R  +G     ++ +    ++   
Sbjct: 298 -------EGSVSDASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKI 350

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    S    ++   A  + +     +E S     K + L++ NY+
Sbjct: 351 SLAKSKSTFEDLDYAEAVIEFNENSRALEASQKAFGKTKDLTLFNYI 397


>gi|323706356|ref|ZP_08117921.1| flagellar hook-associated protein 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534318|gb|EGB24104.1| flagellar hook-associated protein 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 296

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 93/337 (27%), Gaps = 59/337 (17%)

Query: 21  ELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQ 80
           +  +   K    + TG+           V SIL  + E         +       LS + 
Sbjct: 18  KNLERLQKDQNMLSTGEKVSKPSDDPVAVASILRIKTEIARNNAYTKNTDDAKSWLSLTD 77

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
             L  +  ++Q+     V    G    +     A  +    +  +   N    G+Y+F+G
Sbjct: 78  TALGQIGDMLQNARELAVQGSNGTLTQSDMQSIAAQVDQLKQQIIQVGNTQYNGRYIFAG 137

Query: 141 INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200
             +  KP +      +    + D     F       + AG +    ++   ++ D     
Sbjct: 138 YKTDTKPFSD-----TSNGYAGDDGAIKF------EIGAGGNTIQVNVTGDKVFDVSSGT 186

Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN 260
               +  +  +N   +  +  +   I D                                
Sbjct: 187 SQLLTVMDNLSNALKSGDNQAVSNIIGD-------------------------------- 214

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
                           +   L  I+  RA  G     I+     L + N    + +SK+ 
Sbjct: 215 ----------------IDNQLQNILSIRADAGAKANRIDLTANRLSDDNYNFTSLLSKNQ 258

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +       L    N    S      + + S++++L
Sbjct: 259 DADIAQVITNLKMDDNVYRASLASGAMIIQPSLVDFL 295


>gi|312109476|ref|YP_003987792.1| flagellar hook-associated protein 3 [Geobacillus sp. Y4.1MC1]
 gi|311214577|gb|ADP73181.1| flagellar hook-associated protein 3 [Geobacillus sp. Y4.1MC1]
          Length = 298

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/352 (10%), Positives = 103/352 (29%), Gaps = 57/352 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++   +   M        +   K  E++VTG+               + + ++   + + 
Sbjct: 3   VTQFMLANNMLRNLSNSYERLGKYQEQLVTGKKISRPSDDPVVAMKGIAYREDLARVKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   V   + ++   L  +   +Q +   +V               A  +    +  V
Sbjct: 63  QRNIGEVHNWIDSADDALDKVGLALQRVQELVVQASTDTATPEDRKKIADEIDQIQKHIV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             AN    G+Y+F+G ++      GY         + +        E    +    +++ 
Sbjct: 123 DVANTKVGGKYIFNGADTKNPLFIGYPDGMGGLGLNPNANTSDVEIEVFDGIKLDVNIDG 182

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
            ++    + + +  L+   +D         N++ + I   +   E               
Sbjct: 183 KTLFTG-IIEMLDNLKTVLNDP--------NSTGNTISSHLSQVE--------------- 218

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
                              A+                 ++  R+ LG  +  +      L
Sbjct: 219 -------------------AQQ--------------DALLAARSELGAKQNRVEMMENRL 245

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  I    +S +  +E       L T  +    +  +  ++ + +++++L
Sbjct: 246 STQEVIATKLMSNNEDIEYEKTITDLITQESVHRAALSVGARIIQPTLVDFL 297


>gi|289577713|ref|YP_003476340.1| flagellar hook-associated protein 3 [Thermoanaerobacter italicus
           Ab9]
 gi|289527426|gb|ADD01778.1| flagellar hook-associated protein 3 [Thermoanaerobacter italicus
           Ab9]
          Length = 297

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 37/125 (29%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             K    + TG+           V + L    +         +   V   L+ +   L  
Sbjct: 23  LQKNQNMLSTGKKISRPSDDPVAVATSLRIRTDMARNDAYTKNADEVQSWLNITDTALDQ 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           +  ++Q      V    G          A  +       +   N    G+Y+F+G  ++ 
Sbjct: 83  LGDLLQRTRELAVEGANGTLTQADMQKIAKEIEQLKAQMIQVGNTQYNGRYIFAGFKTTT 142

Query: 146 KPLNG 150
           +P + 
Sbjct: 143 QPFSE 147


>gi|315649833|ref|ZP_07902916.1| flagellar hook-associated protein 3 [Paenibacillus vortex V453]
 gi|315274807|gb|EFU38188.1| flagellar hook-associated protein 3 [Paenibacillus vortex V453]
          Length = 286

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 102/333 (30%), Gaps = 60/333 (18%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             K  E+M+T +  +        V + L++  +     +   +       L      ++ 
Sbjct: 12  LDKYQEQMMTQRRINRPSDDPVGVAAALQYRGQITATTQFEQNAEDADSWLKYGDTVMTE 71

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           + +I+Q +    V         +     A  +   Y+  V+  N   +G+Y+F+G  + E
Sbjct: 72  VTQIIQKLSELAVQGGTDTVPADARENIAAEVEQLYQQLVSLGNSQFKGKYIFNGERTDE 131

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
           KP     T+ + A  + +   Q            G  + VS     +       +   F 
Sbjct: 132 KPFPDDPTQTAYALDNGEVRYQ-----------VGAGITVSVNTPGEQ------VFGAFG 174

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGA 265
           D                                          + V+   F    L +  
Sbjct: 175 DASG---------------------------------------IFVVVDNFKKALLANDT 195

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL-QNKNNIIDTYISKSIGVEQ 324
                +  ++ +Q+ L   I  +A +G  +  +      L     N +D   SK    + 
Sbjct: 196 --TAIQNSITNLQKNLETTITAQAEMGGKQNRLEFTLSRLGDLNINYMDLQ-SKIEDADI 252

Query: 325 HTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 L T  +  + S     ++ + S+L++L
Sbjct: 253 SKVIIDLKTSESVYQASLDTMARIIRPSLLDFL 285


>gi|114046845|ref|YP_737395.1| flagellar hook-associated protein FlgL [Shewanella sp. MR-7]
 gi|113888287|gb|ABI42338.1| flagellar hook-associated protein 3 [Shewanella sp. MR-7]
          Length = 402

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/406 (15%), Positives = 137/406 (33%), Gaps = 60/406 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEWEQEKN 60
           +S++ +F +      +    + K+ +++ +G+       D    LG          Q   
Sbjct: 3   LSSAQLFNQSISSVLQKQTATSKILDQLSSGKKVNTSGDDPVAALGID-----NLNQRNA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + + +    T  L  +++ L     ++  M   ++    G   + +    A  LR S
Sbjct: 58  LVDQFMKNIDYATNHLQQTESQLGQADALISSMKDLMLQGSNGSQTSEERQTIADDLRKS 117

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKD----------SLAKKSFDQMLQGF 169
            +  +T AN  D  G YLF+G  +   P                  S    S  Q+    
Sbjct: 118 LDQLLTIANTKDESGNYLFAGNKTETLPFQFDANGKIVYQGDSGVHSAIIASGIQLNTNV 177

Query: 170 LEENSKSLLAGQHLEVS-SMNAQQMTDF-------------IKQLEDKFSDDEYWANNWS 215
             + +         + S + ++ Q  +F             +   +  F DD     N  
Sbjct: 178 AGDTAFIKSPNAMGDYSVNYSSSQQGEFSVTSAKLDGVTPSLSDYQINFLDDGAGGINVE 237

Query: 216 NASDHNIKYRIKDTEGIDVSANVNMRGIR------------------------DIMFVAV 251
                     I      D SA++N  G++                        D    A+
Sbjct: 238 VTDTATPANVISAAAPFDPSASINFDGVKLSIEGEPKIGDSFTLHQEAEVSIFDTFSKAI 297

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
              +   +  T   ++ L  ++L+ +Q G+  I +Q+ + G S K + +      ++  I
Sbjct: 298 ALFDNADQVQTPSGQSELA-QLLNNIQSGVKQISQQQGLAGNSLKVLEKYTDKHTDEKLI 356

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             + +SK   V+  TA  +       +     + +K+  +S+ +Y+
Sbjct: 357 NTSALSKLEDVDYATAITEFEKQQLALNAVSSVFSKVGSVSLFDYI 402


>gi|254438497|ref|ZP_05051991.1| flagellar hook-associated protein 3 [Octadecabacter antarcticus
           307]
 gi|198253943|gb|EDY78257.1| flagellar hook-associated protein 3 [Octadecabacter antarcticus
           307]
          Length = 420

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/419 (11%), Positives = 119/419 (28%), Gaps = 67/419 (15%)

Query: 5   GISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE 64
            IST  + ++M     +++++      ++ TG+      +       +   E+    +  
Sbjct: 2   SISTKLLSDQMVSRFSQISEEIQLRQIKISTGREITEAAEKPFEAIKLSALEEGLTQLEG 61

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
              +      RLS     L+S+  I+  +    V                  +    E+ 
Sbjct: 62  FGKNVGTAQSRLSMGDTVLTSVDDILAQLRERAVAANSDTFSTTDMEAFRVEVSQLREAL 121

Query: 125 VTFANM-TDEGQYLFSGINSSEKPLNGYFT----------------------KDSLAKKS 161
           V  AN  T  GQ LF G  +   P +                            S+   S
Sbjct: 122 VGLANTQTSNGQALFGGYATDIVPFSEDANGRMQYRGDGGEHTLAVSETMRLPTSVNGGS 181

Query: 162 -----------------FDQMLQGFLEENSKSLLAGQHLEV-------SSMNAQQMTDFI 197
                             D        ++S         +V            +  +  +
Sbjct: 182 TFMNVQTDDGIESVFNIVDSFEAALATDDSVHGTLSGSADVGLSLSFNGDRTPRDWSLTL 241

Query: 198 KQLEDKFSDDEYWANNWSN---------ASDHNIKYRIKDTEGIDVSANVNMRGIRDIMF 248
           +  +             SN          SD            ++++A+     + ++  
Sbjct: 242 EGPDGSVFITALEVVGGSNDRLLEAINERSDETGVAAASVDGRLELTASEGSITLSNLDI 301

Query: 249 VAVIGTEFLSK---NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE----KNINEE 301
             V     + +      D     +  + +  +   L  I +    + IS       +   
Sbjct: 302 GGVTLASRMPQFTITTNDDPNQTMVPR-VQLLSAQLEKITKAGQDVAISRTIVGARLQRA 360

Query: 302 RVF---LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 +Q ++  +++ +++   V+      +L TL+   + +    +++ + S+ ++L
Sbjct: 361 NDQEASIQTRSVALESDVNELGSVDLEKVITELQTLLVMRDAARQAYSRISQGSLFDFL 419


>gi|288554149|ref|YP_003426084.1| flagellar hook-associated protein 3 (HAP3) [Bacillus pseudofirmus
           OF4]
 gi|288545309|gb|ADC49192.1| flagellar hook-associated protein 3 (HAP3) [Bacillus pseudofirmus
           OF4]
          Length = 573

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 57/154 (37%), Gaps = 13/154 (8%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEW 55
           M+ T   +      +         +  ++ + + TG+       D  + +       + +
Sbjct: 1   MRVT--QSMLANNALRN-ISSGYANLAQIQDRLATGKKFTRASQDPVVAMNG-----MRY 52

Query: 56  EQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAG 115
             +   + +   + + +   + +S + L  + + +Q +    V       ++N       
Sbjct: 53  RTQVTEVTQFKRNLAEMYNFMESSDSALGEVNQALQRIRELTVQASNDTYNSNDRKNIIQ 112

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLN 149
            ++   E   +  N     +YLF+G N+S++P++
Sbjct: 113 EIQQLSEHLASIGNTKVNNKYLFNGTNTSKQPID 146



 Score = 36.6 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 215 SNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIG-----TEFLSKNLTDGARNVL 269
           S  S +N    I+  +G+ +++NVN + +      A+I       E L  ++   + + +
Sbjct: 426 SPVSGNNETIEIELLKGVTIASNVNTQNVISAELFAIIKEITDELELLMDDMEHSSGSKI 485

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
               L  + + +  ++  RA LG     +      +  +  I    +S++   +      
Sbjct: 486 NGY-LDRLDKCMDDVLSARANLGARINRVEMIENRVLEQEVIAKRIMSENEDADMEQVII 544

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
            L+T  +    +  +  ++ + S+L++L
Sbjct: 545 DLTTQESVHRAAMAVGARIIQPSLLDFL 572


>gi|229524185|ref|ZP_04413590.1| flagellar hook-associated protein FlgL [Vibrio cholerae bv.
           albensis VL426]
 gi|229337766|gb|EEO02783.1| flagellar hook-associated protein FlgL [Vibrio cholerae bv.
           albensis VL426]
          Length = 397

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 126/407 (30%), Gaps = 69/407 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q++  
Sbjct: 5   ISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLA----THYIQNVGQQEEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + L +  LV  RL   +  +S+ ++        ++ ++ G          A +L++  
Sbjct: 61  LRQYLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+  AN+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 NNFINLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGDDYQRKMKISNSLEIPFNNP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-----SMNAQQMTDFIKQLEDKFSDDEY 209
            S            +    +    +   LE +        A     F+   E K  +   
Sbjct: 181 GSKVFMEIPNPFGSYEPNYALQEGSELLLERAVNLNPDDTASYRVTFVDMPEGK--NGYQ 238

Query: 210 WANNWSNAS---------------DHNIKYRIKDTEGID----VSANVNMRGIRDIMFVA 250
              N S                  +  +K +I   + I+     + +V     RD +  A
Sbjct: 239 LERNGSVVQAGEFDAKTGIQFEELNIQVKGQISKGDAIELTPRTTFSVFDT-FRDAIRYA 297

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
                    +++D +      +++         + + R  +G     ++ +    ++   
Sbjct: 298 -------EGSVSDASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKI 350

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    S    ++   A  + +     +E S     K + L++ NY+
Sbjct: 351 SLAKSKSTFEDLDYAEAVIEFNENSRALEASQKAFGKTKDLNLFNYI 397


>gi|108809048|ref|YP_652964.1| flagellar hook-associated protein FlgL [Yersinia pestis Antiqua]
 gi|108810755|ref|YP_646522.1| flagellar hook-associated protein FlgL [Yersinia pestis Nepal516]
 gi|145597824|ref|YP_001161900.1| flagellar hook-associated protein FlgL [Yersinia pestis Pestoides
           F]
 gi|150260242|ref|ZP_01916970.1| lateral flagellar hook-associated protein 3 [Yersinia pestis
           CA88-4125]
 gi|165924845|ref|ZP_02220677.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939078|ref|ZP_02227630.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009056|ref|ZP_02229954.1| flagellar hook-associated protein 3 [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212174|ref|ZP_02238209.1| flagellar hook-associated protein 3 [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399532|ref|ZP_02305056.1| flagellar hook-associated protein 3 [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419093|ref|ZP_02310846.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425107|ref|ZP_02316860.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466330|ref|ZP_02331034.1| flagellar hook-associated protein FlgL [Yersinia pestis FV-1]
 gi|218927919|ref|YP_002345794.1| flagellar hook-associated protein FlgL [Yersinia pestis CO92]
 gi|229837415|ref|ZP_04457578.1| lateral flagellar hook-associated protein 3 [Yersinia pestis
           Pestoides A]
 gi|229840630|ref|ZP_04460789.1| lateral flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842819|ref|ZP_04462971.1| lateral flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900952|ref|ZP_04516076.1| lateral flagellar hook-associated protein 3 [Yersinia pestis
           Nepal516]
 gi|270487665|ref|ZP_06204739.1| flagellar hook-associated protein 3 [Yersinia pestis KIM D27]
 gi|294502795|ref|YP_003566857.1| flagellar hook-associated protein [Yersinia pestis Z176003]
 gi|108774403|gb|ABG16922.1| flagellar hook-associated protein [Yersinia pestis Nepal516]
 gi|108780961|gb|ABG15019.1| putative flagellar hook-associated protein [Yersinia pestis
           Antiqua]
 gi|115346530|emb|CAL19407.1| putative flagellar hook-associated protein [Yersinia pestis CO92]
 gi|145209520|gb|ABP38927.1| flagellar hook-associated protein [Yersinia pestis Pestoides F]
 gi|149289650|gb|EDM39727.1| lateral flagellar hook-associated protein 3 [Yersinia pestis
           CA88-4125]
 gi|165913034|gb|EDR31659.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923045|gb|EDR40196.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992395|gb|EDR44696.1| flagellar hook-associated protein 3 [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206920|gb|EDR51400.1| flagellar hook-associated protein 3 [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963087|gb|EDR59108.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052036|gb|EDR63444.1| flagellar hook-associated protein 3 [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055870|gb|EDR65651.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682291|gb|EEO78383.1| lateral flagellar hook-associated protein 3 [Yersinia pestis
           Nepal516]
 gi|229690086|gb|EEO82143.1| lateral flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696996|gb|EEO87043.1| lateral flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705538|gb|EEO91548.1| lateral flagellar hook-associated protein 3 [Yersinia pestis
           Pestoides A]
 gi|262360827|gb|ACY57548.1| flagellar hook-associated protein [Yersinia pestis D106004]
 gi|262364772|gb|ACY61329.1| flagellar hook-associated protein [Yersinia pestis D182038]
 gi|270336169|gb|EFA46946.1| flagellar hook-associated protein 3 [Yersinia pestis KIM D27]
 gi|294353254|gb|ADE63595.1| flagellar hook-associated protein [Yersinia pestis Z176003]
 gi|320016704|gb|ADW00276.1| lateral flagellar hook-associated protein 3 [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 307

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST ++   MN    + N+   K++++M+T Q      +     T +L+  +E+ +I + 
Sbjct: 3   VSTPTMSSTMNRFITQHNEKLEKINKQMMTQQRITLPSEDPIASTRLLQINREQANIKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S ++  L+    H+S++ K +  +   LV +      N      A  L    ES V
Sbjct: 63  SSNISGLSNSLTNQTGHVSAINKQLVSIKSSLVSINGNIKSNKDIAGVADELNYMLESVV 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKD 155
              N    EG+YLF+G  S+++P+     K+
Sbjct: 123 AGLNAKNSEGRYLFAGTASNKQPITFDSAKN 153


>gi|313682312|ref|YP_004060050.1| flagellar hook-associated protein flgl [Sulfuricurvum kujiense DSM
           16994]
 gi|313155172|gb|ADR33850.1| flagellar hook-associated protein FlgL [Sulfuricurvum kujiense DSM
           16994]
          Length = 703

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 89/247 (36%), Gaps = 5/247 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I++ S +  +     ++NK    +++++ +GQ   Y  +  +   + +  + E   + + 
Sbjct: 3   ITSGSYYNNIYGENNKINKQLFDVNKQISSGQKIQYAHEDPSIFINTIRLDDELTTLGQV 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
            +S     K  + +   +  + K ++ M   L+        +      A  LR      +
Sbjct: 63  KNSAQNAYKFSTQTDTTIGDIVKTLESMKVKLLNAASDTQSDASRNAIAQDLRGLQNHLL 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLN---GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           T AN +  GQ++FSG   S KP++    Y   D   +      L+     +   L  G  
Sbjct: 123 TLANTSIGGQFIFSGTALSVKPIDENGNYKGNDKTLEAFLGAGLKQPYNISGAQLFFGDE 182

Query: 183 LEVS-SMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
             ++  +        +  L           +++S  +       I+D    D +++    
Sbjct: 183 SIINRKITTNVPQTSLTDLYPNIMQGSQIPDSFSKETYITSSSTIRD-LMGDTNSDATDD 241

Query: 242 GIRDIMF 248
            +R   F
Sbjct: 242 PLRKAYF 248



 Score = 35.8 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 32/94 (34%)

Query: 264 GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
             RN+  +  +  +      +   + + G   + +               T  S  I  +
Sbjct: 610 DPRNIGIQNSIQKMDDLTDHVSRLQTLAGSYSQVLQASSDRSDLLIISTKTLQSDVIDTD 669

Query: 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              +  +L  L    +      +K+ +LS++NYL
Sbjct: 670 IAESQLKLQQLTLNYQALLSNISKVSQLSLVNYL 703


>gi|319790355|ref|YP_004151988.1| flagellar hook-associated protein 3 [Thermovibrio ammonificans
           HB-1]
 gi|317114857|gb|ADU97347.1| flagellar hook-associated protein 3 [Thermovibrio ammonificans
           HB-1]
          Length = 312

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 120/356 (33%), Gaps = 51/356 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  +F+      +  + +  +  EE+ +G+S             +L  ++   ++   
Sbjct: 3   ISTGELFDLFIRYDRLKSAEIKRKAEELSSGKSILRPSDSPVDYARLLRLDRFVENLDRF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESF 124
             +  LV   + T+++ L+S  + ++     ++ IL  G  +       A       +  
Sbjct: 63  NRNIDLVKANMDTAESALASTVQTLEAARVKIIQILNTGALNGEDAKTLADYFESVKDYV 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           +   N      YLF G+ +   P +             D   QG   E +  +  G  + 
Sbjct: 123 IQMGNEKVGDAYLFGGVKTQSPPFDS------------DGTYQGETRETTVPVANGVEVS 170

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +                 ++ + Y+  N        +  +I   E +D    +   G  
Sbjct: 171 TN-----------------YNGENYFGVN-------RVSGKITVVEVLDRIVQIIQSGDL 206

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE---E 301
             +  A +  +              T K+L     GLS I+E R++LG     +++   +
Sbjct: 207 SQLDSATVTVDLGDGPQ--------TMKLLDAFDAGLSKIMEYRSILGTQVALVDDLKTQ 258

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              +      + + I      +  +  +         +      T L++LS+LN+L
Sbjct: 259 NEAVALHAKELRSKIGD---ADFASVISDYDKAKTAYQALLSTYTDLKQLSLLNFL 311


>gi|22127320|ref|NP_670743.1| flagellar hook-associated protein FlgL [Yersinia pestis KIM 10]
 gi|21960401|gb|AAM86994.1|AE013948_2 hypothetical [Yersinia pestis KIM 10]
          Length = 308

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST ++   MN    + N+   K++++M+T Q      +     T +L+  +E+ +I + 
Sbjct: 4   VSTPTMSSTMNRFITQHNEKLEKINKQMMTQQRITLPSEDPIASTRLLQINREQANIKQY 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S ++  L+    H+S++ K +  +   LV +      N      A  L    ES V
Sbjct: 64  SSNISGLSNSLTNQTGHVSAINKQLVSIKSSLVSINGNIKSNKDIAGVADELNYMLESVV 123

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKD 155
              N    EG+YLF+G  S+++P+     K+
Sbjct: 124 AGLNAKNSEGRYLFAGTASNKQPITFDSAKN 154


>gi|163789662|ref|ZP_02184100.1| Flagellin-like protein [Carnobacterium sp. AT7]
 gi|159875194|gb|EDP69260.1| Flagellin-like protein [Carnobacterium sp. AT7]
          Length = 305

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 110/357 (30%), Gaps = 59/357 (16%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  + +   S          +       L +E+   + SD  L    +V+ IL+      
Sbjct: 8   MSKSFLRNLSANTS---NVMKYQNQLSTL-KEVS--KPSDDPL----KVSKILDLNNSII 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
              +   + +   +  +   + LSS  + +Q +   +     G   +     N   +   
Sbjct: 58  QNDQYKTTINDAIQWTNVQDSALSSATESMQRIKTLIQYSANGTLSHEDRQANKAEIESE 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +  +   N    G+Y+F+G+N++EKP                               + 
Sbjct: 118 IQGTIDALNTNFGGRYVFAGMNTTEKP------------------------------FSI 147

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +   +      +         S +     +   ++D         +E +        
Sbjct: 148 DKDDAGEITGITYNNDKDTGHGNLSREIAPGVSVELSTDGRNFMNTNGSEDLGT------ 201

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                         E  ++ L++         +LS   Q +  ++  R+  G     +  
Sbjct: 202 ----FFSKALKALDEDDTEGLSN---------LLSRADQEIENVVSNRSKTGSIFNRLTA 248

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 ++   + T +S++  ++    + Q +   +  + +  + TK+   SIL+YL
Sbjct: 249 TLERNDSEKLNLKTMLSENQDIDLAEKYMQFTMEKSAYQAALSMGTKILDTSILDYL 305


>gi|289666056|ref|ZP_06487637.1| flagellar hook-associated protein FlgL [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670518|ref|ZP_06491593.1| flagellar hook-associated protein FlgL [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 401

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 121/398 (30%), Gaps = 44/398 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  ISTS ++ +             ++  ++ +GQ             + +  ++    
Sbjct: 1   MTDRISTSMMYSQSVASMGAKQARLNQIESQLSSGQRLVTAKDDPVAAGTAVGLDRALAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I     + + V  RL   +  LS     +  +    V         +     A  L    
Sbjct: 61  ITRFGENANNVQNRLGLQENALSQAGDKMARVTELAVQANNSSLSPDDRKAIASELTALR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKS 176
           +S ++ AN TD  G+YLF G      P               +K  +     F+ +    
Sbjct: 121 DSMLSLANSTDGTGRYLFGGTADGSAPFIKSSGNVTYNGDQTQKQVEVAPDTFVSDTLPG 180

Query: 177 LL------AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSN----ASDH------ 220
                    G     +  NA      +     + +    W  +  +    A+D       
Sbjct: 181 SEIFMRIRTGDGTVDAHANAANTGTGLLLDFSRDASTGTWNGSSYSVQFTAADTYEVRDS 240

Query: 221 -------------------NIKYRIKDTEGIDVSANVNMRGIRDIMFVA-VIGTEFLSKN 260
                               ++ RI     +  S  +   G +D+      + +   S  
Sbjct: 241 TNAVVSTGTYKEGQDIKAAGVRMRISGAPAVGDSFQIGASGTKDVFSTIDDMVSALNSDT 300

Query: 261 LTDGARNVLTKK---MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
           LT   +  +T      +  + Q  S +I+ RA  G     I+     L++    + T +S
Sbjct: 301 LTAPQKASMTNTLQSSMRDIAQASSKMIDARASGGAQLSAIDNANSLLESNEVTLKTTLS 360

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
               ++  +A  Q       ++ +  I  ++Q  S+ N
Sbjct: 361 SIRDLDYASAIGQYQLEKASLQAAQTIFQQMQSSSLFN 398


>gi|118588733|ref|ZP_01546141.1| hypothetical protein SIAM614_18544 [Stappia aggregata IAM 12614]
 gi|118438719|gb|EAV45352.1| hypothetical protein SIAM614_18544 [Stappia aggregata IAM 12614]
          Length = 511

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 73/206 (35%), Gaps = 21/206 (10%)

Query: 161 SFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDH 220
           + ++  + F  E  + +        +++                S    W    +  +D 
Sbjct: 318 AAEEFFKTFGGEEPQRVDGPPFDSATALTGGG------------STTVAWYTGRNTPTDD 365

Query: 221 NIKYR---IKDTEGIDVSANVNMRGIRDIM--FVAVIGTEF-LSKNLTDGARNVLTKKML 274
               +   I     +      N + +++++    A I  +F       +   N L+  + 
Sbjct: 366 PRTDKNAVIDSNLTVQYGIRANEKPLQELVQSLAAFIAADFSGGTTTDEEYYNTLSTNLR 425

Query: 275 STV---QQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQL 331
           +T+       SGI +    + I+ + ++          +     I+   G++Q    A++
Sbjct: 426 TTLQPPGVDQSGITDIATDIAITHRTVSLTDERHVQMKSSYQGTIADIEGIDQDQVAAEI 485

Query: 332 STLINKIEMSYMITTKLQKLSILNYL 357
             L   IE+SY  ++ +  L++ +YL
Sbjct: 486 LQLQTNIEVSYRASSIVFNLTLSDYL 511



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 5/191 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  + I+TS     +     ELN        ++  G+      ++G R    ++  Q+ +
Sbjct: 1   MAVSNITTS--RTYLTRQLGELNDMLASKTTQLARGKVGTTYGEVGDRRLLDIQLTQKVS 58

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I     + ++    L TS   L  ++ I QD    L        D+ +        +  
Sbjct: 59  MIESYQDTITIANLHLQTSTMSLERLEDIRQDAKSALDTNDFVLQDDGQ-TQTQSRAKLL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLN--GYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
               +   N    G Y+F G ++ + P+         +  +     ++  + E N     
Sbjct: 118 LNEALNILNTEVAGFYVFGGTDAVQDPVARIDAILDGANGRDGLRTVMSEYSEANLGVGN 177

Query: 179 AGQHLEVSSMN 189
            G+    +   
Sbjct: 178 NGRTTTSALTT 188


>gi|255523747|ref|ZP_05390713.1| flagellar hook-associated protein 3 [Clostridium carboxidivorans
           P7]
 gi|296186749|ref|ZP_06855151.1| flagellar hook-associated protein 3 [Clostridium carboxidivorans
           P7]
 gi|255512616|gb|EET88890.1| flagellar hook-associated protein 3 [Clostridium carboxidivorans
           P7]
 gi|296048786|gb|EFG88218.1| flagellar hook-associated protein 3 [Clostridium carboxidivorans
           P7]
          Length = 450

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 45/138 (32%)

Query: 24  KDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83
            +  ++  +M TG++          V   ++     +   +   + +     L T+   L
Sbjct: 21  NNLQRIQRQMSTGKNFTKPSDDPFNVARSMQMHTAIDANTQYNKNITNTINWLDTTDTAL 80

Query: 84  SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS 143
           + +  + Q +   LV        +++       +           N T  G+Y+F G   
Sbjct: 81  NQLGNVFQSIREKLVASGNAAYGSDERTKIKDEINQRIGQIAQILNTTFAGEYVFGGTKG 140

Query: 144 SEKPLNGYFTKDSLAKKS 161
           + KP++           S
Sbjct: 141 ASKPVDASMDSSIGPVDS 158


>gi|299131802|ref|ZP_07024997.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gi|298591939|gb|EFI52139.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 515

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 53/149 (35%), Gaps = 11/149 (7%)

Query: 220 HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF---------LSKNLTDGARNVLT 270
           +    ++  +  +   A  N    R+++    +               +NL +   + L 
Sbjct: 364 NTAVAQVDGSVSVSYGATANESAFRNLLQNMAVYAAVTTTVDPNDPNGQNLANAQISALN 423

Query: 271 KK--MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
           ++      VQ G + + +  A    ++              ++  T + +  GV      
Sbjct: 424 ERVNANLAVQPGTTSVEDIEAQFAGAQSATKSASTRQTQTTSMAQTMLDQIQGVNDDEVA 483

Query: 329 AQLSTLINKIEMSYMITTKLQKLSILNYL 357
           A++  L   ++ SY  T  L +LS++ YL
Sbjct: 484 AKILALQTSLQASYQTTASLYQLSLVKYL 512



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 63/206 (30%), Gaps = 5/206 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M   G+S       +      +      L +++ +G+ S     LG           + +
Sbjct: 1   MTIEGVS--GRTSYLGSSLLNIKTQLDTLTQQLASGKKSTTYSGLGLDSAFATGLRSQIS 58

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++   ++ + VT R++ +   L  +  +   +        +    N +      +   S
Sbjct: 59  MLSGYQNTQTNVTTRINVANLSLQGLVDMRTQVQSAATGASQVLNANGQTS-GQQIGYAS 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEK--PLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
           +   ++  N     +YLFSG  +              +  K     ++   L  +  +  
Sbjct: 118 FTQAISLLNTQSGDRYLFSGRATDTPSTAAADDILNGADGKDGLKAVIADRLIADQGTGN 177

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKF 204
            G+    ++     +T         F
Sbjct: 178 MGRLTTDATTTPGVVTVGEDANPSPF 203


>gi|170725962|ref|YP_001759988.1| flagellar hook-associated protein FlgL [Shewanella woodyi ATCC
           51908]
 gi|169811309|gb|ACA85893.1| flagellar hook-associated protein 3 [Shewanella woodyi ATCC 51908]
          Length = 396

 Score = 56.3 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 56/394 (14%), Positives = 135/394 (34%), Gaps = 42/394 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS +F +      +    + K+ +++ +G+  +           I    Q+   + + 
Sbjct: 3   ISTSQMFNQSINSVLDKQTATSKILDQLSSGKKVNTAGDDPVASVGIDNLNQQNALVDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +      RL  S++ L + + +V      ++  + G    ++  + A  L+ + E  V
Sbjct: 63  MKNIDYAKNRLGLSESKLGTAETLVASTREQVIRAINGGLSESERQMIADELKGTLEELV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKD----------SLAKKSFDQMLQGFLEENS 174
             AN  D  G Y+F+G  + ++P       +               S   +      +N+
Sbjct: 123 AVANTKDESGNYIFAGFETGKQPFAFDSAGNMIYSGDNGAREAVIASGVTIATNIPGDNA 182

Query: 175 -KSLLAGQHLEVSSMNAQQMTDF------IKQLEDKFSDDEYWANNWSN-----ASDHNI 222
             +  +G     ++  A Q+ +F      I        D   +    +N     +S   +
Sbjct: 183 FMNAPSGLGDYSANYLASQVGEFSVDSAKITNPGTYVEDTYTFTMVGANLEVRDSSATLV 242

Query: 223 KYRIKDTEGIDVSANVNM---RGIRDIMFVAVI-----GTEFLSKN-----------LTD 263
              +       +S N       G+        I      + F + N           +  
Sbjct: 243 TTEVGFDPTNPISFNGMEVKLDGMPTAGDSFSITPQSEVSIFDTINQAISLLEDPNKVNT 302

Query: 264 GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
                   ++L+ +  G++ I   R+  G S K+I        ++  +  + +S    ++
Sbjct: 303 PQGVSELAQILNNIDSGVNQISIARSETGNSLKSIESYSTHHVDEKLVNSSTLSMLEDLD 362

Query: 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +A  +       +     + +K+  +S+ +Y+
Sbjct: 363 YASAITEFEKQQLALNAVSSVFSKVGSVSLFDYI 396


>gi|295096218|emb|CBK85308.1| flagellar hook-associated protein 3 [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 311

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 99/328 (30%), Gaps = 48/328 (14%)

Query: 31  EEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIV 90
           E+M TG+  +         +  +   Q +   ++   + S  T ++S  +  LS +   +
Sbjct: 22  EQMSTGKRINRPSDDPIAASQAVVLSQAQTQNSQYALARSFATTKVSLEENVLSQVTTAI 81

Query: 91  QDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLN 149
           Q     +V    G   ++     A  L+   +  +  AN TD  G+Y+FSG  +     +
Sbjct: 82  QAAQEKIVNAGNGTLSDDDRASLATNLQGIRDQLMNLANSTDGNGRYIFSGYKTEAAAFD 141

Query: 150 ----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
                Y    +   +  D      +                     ++ D          
Sbjct: 142 QTTGDYKGGGTPISQQVDSARTMQISH----------------TGTEVFDSFTSNAKPEP 185

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGA 265
           D      N     D  I+                            + T          A
Sbjct: 186 DGSAPETNLFKILDSAIE---------------------------ALNTPIGEDETKAEA 218

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
                 K    +   L+ ++  RA LGI    + +     +++       +S  + V+ +
Sbjct: 219 FTAAIDKANRGLSNSLNNVLTVRADLGIKLDELGKLDALGEDRALGQTQQMSNLVDVDWN 278

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +  +  +     ++ SY   + +Q +S+
Sbjct: 279 SVISSYTMQQAALQASYKAFSDMQGMSL 306


>gi|300854138|ref|YP_003779122.1| putative flagellar hook-associated protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434253|gb|ADK14020.1| putative flagellar hook-associated protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 468

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 66/187 (35%), Gaps = 4/187 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+  ++ +      +   ++  K+ +++ + ++          V   ++ +   N+  + 
Sbjct: 3   ITNKTLSDNFLADMQRNLENLSKVQQQVSSTKNFSKPSDDPINVERAMQLQSSVNYTTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       + T+   L  +  ++ ++   L       T + K  IN  + ++  +   
Sbjct: 63  GSNIKTANTWMETTDTTLGQIGTVLSNIRNNLEQAGGVYTQDEKDKINDAVSQE-VQQVA 121

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF---DQMLQGFLEENSKSLLAGQH 182
           T  N   +G+Y+F G     KP+      + +    +   D     FL     S     +
Sbjct: 122 TLLNTNFQGEYIFGGTAGLSKPITTTTDANGIVSLQYADKDGNAVQFLPSVESSGFDKGN 181

Query: 183 LEVSSMN 189
            E  S+ 
Sbjct: 182 WEGKSIT 188


>gi|52841458|ref|YP_095257.1| flagellar hook-associated protein FlgL [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628569|gb|AAU27310.1| flagellar hook associated protein type 3 FlgL [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 411

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/409 (11%), Positives = 116/409 (28%), Gaps = 57/409 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ I++R         +   +L ++  +G               I   +Q  N+I   
Sbjct: 3   ISTNQIYQRGLDNLLTQQERLARLQDQQASGIRVRTPSDDPVASAQIELIKQRINNIELF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
            ++       L   +  LS+    +  +    +               A   +      +
Sbjct: 63  QNNRQAADSALRLEEGILSNAVNSLHRLREIQIQAGNPSLSEEDRKTLAVEAQALLNQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN----------------GYFTKDSLAKKSFDQMLQG 168
            +AN  D  G Y+FSG  S  +P++                      SL     D     
Sbjct: 123 DYANTKDSNGSYMFSGSKSLTQPVSLNLSGQYVYNGDSTQRFQAVTTSLLVAVNDTGDNV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIK- 227
           F+   S +        ++               +     + +   ++  S  N+   +  
Sbjct: 183 FMRIPSGNGRFAIRETLTPNTGTASVSSGSVTNEAAFVPDNYTMTFALNSQGNLVVMVSG 242

Query: 228 ---------------------------------------DTEGIDVSANVNMRGIRDIMF 248
                                                    +   +S   N      +  
Sbjct: 243 TLSGNVIPPSGLPDDAPLYQEGSAIGFNGMEMVVSGLPKAGDSFSISPAKNESIFSTVQR 302

Query: 249 VAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNK 308
           +     +  + ++   A      ++L+ +   L  I+  ++ LG     +        + 
Sbjct: 303 MINNLNKPYTSSVEKAATQTENNQLLAQIDSALGHILSVQSDLGARLNQLETAEKANNDY 362

Query: 309 NNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +I    + K   ++      +L+  +  ++ + +  T++Q LS+ N+L
Sbjct: 363 LDISAATLKKLREIDPVAVATELNLQLVNLQAAQLSFTRIQGLSLFNFL 411


>gi|42527854|ref|NP_972952.1| flagellar hook-associated protein FlgL [Treponema denticola ATCC
           35405]
 gi|41818682|gb|AAS12871.1| flagellar hook-associated protein 3 [Treponema denticola ATCC
           35405]
          Length = 415

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/403 (11%), Positives = 116/403 (28%), Gaps = 64/403 (15%)

Query: 14  RMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVT 73
            M      L+  + ++  +    Q  D  +  G      + ++     +     +   + 
Sbjct: 17  SMRNQESRLHNLNNQIQSQRRINQLRDDPVSAGH----SVRYKSYLARLERFEKNTKTLR 72

Query: 74  KRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN-MTD 132
            +  +++ ++++  ++VQ +    V    G    +     A    +  +  V   N +  
Sbjct: 73  DQYMSAETYMNNSLQVVQRLRELSVQGANGTYTPDDLKDMAAEADELLKELVQNGNAVNS 132

Query: 133 EGQYLFSGINSSEKP----LNGYFTKDSLAKKSF-----------DQMLQGFLEENSKSL 177
           +G  +FSG  S  +P    +       S                 +     F+  +    
Sbjct: 133 DGVRVFSGTKSFTEPFETVMGDVDGAGSALITQVRYNGTVDSKEVETDELSFMRADQAGN 192

Query: 178 LAGQHLEVSSMNAQQMTDFI---------KQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
                     ++     +F+           +E      +      S  +D     +   
Sbjct: 193 RVFWAERQILISETDARNFVIKEDTSIEVDGVEIPLIAGDNVYAIMSKINDSGAAVKASL 252

Query: 229 TEGIDVSANVNMRGIRDI----MFVAVIGTEFL-------------------SKNLTDGA 265
            + I    N+     R +       + + +E                       +L D A
Sbjct: 253 -DPITSGLNLTTTDARQLWLRDAEGSTVLSELGLIKAEQRPPYNLANSVRVSGGSLFDAA 311

Query: 266 -----------RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
                      +  L  K+L ++ +G+  +  + A  G            +  +   +  
Sbjct: 312 IAVRDAFLSGDQEALGGKVLGSLDEGIHNLTTRMAETGSKYSRAEVILARIDTQTLNVTA 371

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             S+   ++   A   L    +  + S  +  +L + S+LNYL
Sbjct: 372 AESREADLDITKAITDLKMFEHTHQASLSVLGRLYRDSLLNYL 414


>gi|237731014|ref|ZP_04561495.1| flagellar hook-associated protein FlgL [Citrobacter sp. 30_2]
 gi|226906553|gb|EEH92471.1| flagellar hook-associated protein FlgL [Citrobacter sp. 30_2]
          Length = 317

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 112/349 (32%), Gaps = 40/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++++          + +K  E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYQQNMRGITNSQAEWMKFGEQMSTGKRVINPSDDPIAASQAVVLSQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S  T+++S  +  LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  TLARSFATQKVSLEENVLSQVTTAIQAAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F G  +   P        S    +  Q +       +  +       
Sbjct: 123 NLANSTDGNGRYIFGGYKTESAPFAQADGAYSGGTTNVTQQVDA---SRTMVIGHTGDKV 179

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +++ +            +        N +               + +D + +       
Sbjct: 180 FANLTS--------NAVPEPGGGTQEKNLF---------------KMLDTAIDA------ 210

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                  + T     ++          K    ++  L+ ++  RA LG     ++     
Sbjct: 211 -------LKTPIEGNDVAKATAAAAIDKTNRGLKNSLNNVLSVRAELGTQLSELSSLDSL 263

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++       +S  + V+ + A +        ++ SY   T +Q +S+
Sbjct: 264 GADRALGQTQQMSNLVDVDWNAAISSYVMQQAALQASYKAFTDMQGMSL 312


>gi|116872095|ref|YP_848876.1| flagellar hook-associated protein FlgL [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116740973|emb|CAK20093.1| flagellar hook-associated protein FlgL, putative [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 291

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 64/150 (42%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+     +      ++ +  K   ++ +G+  +   +       IL +    + +   
Sbjct: 3   ISTNQQANSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPGATAQILSYNHVLSQLNRE 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+T++  LSSM   +  +   ++  + G +D N    +A  ++   +  V
Sbjct: 63  KTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTSDKNNMSQSAEEIKGLLDVLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
           + AN  D+G+Y+FSG ++S KP     T  
Sbjct: 123 SVANAEDDGRYVFSGSSTSVKPFTTDKTTG 152



 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 7/160 (4%)

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                 F+ D+       N +  N K+R+  T+ ++V    +   + D+        + +
Sbjct: 139 STSVKPFTTDKTTGEIIYNGTTENKKFRV--TDTLEVEVFHDGSAMTDVFNNIQKIVDAM 196

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
                  A + L      T  Q +  I      +G  +  ++     L +K        S
Sbjct: 197 KSG-DKDALSAL----QETNSQNIEIITNSMTNIGGQKNGVSAYDNVLSSKITDFTERKS 251

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               V    A + L+      + +   +  +QKLSILNY+
Sbjct: 252 NVEEVNMPEAVSNLNKTSIAYQAALQSSVMVQKLSILNYM 291


>gi|254459847|ref|ZP_05073263.1| flagellar hook-associated protein 3 [Rhodobacterales bacterium
           HTCC2083]
 gi|206676436|gb|EDZ40923.1| flagellar hook-associated protein 3 [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 420

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 5   GISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE 64
            IST    +RM     +LN +      ++ TGQ+     +       +   E+  + +  
Sbjct: 2   SISTKLFSDRMLTRFADLNDEIQVRQTKISTGQAIIEASESPLAAVELSALEERVSQLDG 61

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
              +  L   RL  S   LS +  I+  +    +       + +        +   +++ 
Sbjct: 62  FKRNVGLAQDRLVLSDTTLSDVDTILSRLREQAITASSSTANVSDLNAIEIEVAQMFDAM 121

Query: 125 VTFANM-TDEGQYLFSGINSSEKPLNG 150
           V  AN  T  GQ LF G  +   P   
Sbjct: 122 VDLANTRTSNGQALFGGYATDGLPFQE 148


>gi|315281369|ref|ZP_07870007.1| flagellar hook-associated protein 3 [Listeria marthii FSL S4-120]
 gi|313614986|gb|EFR88492.1| flagellar hook-associated protein 3 [Listeria marthii FSL S4-120]
          Length = 291

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 64/150 (42%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+     +      ++ +  K   ++ +G+  +   +       IL +    + +   
Sbjct: 3   ISTNQQANSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPGATAQILSYNHVLSQLNRE 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+T++  LSSM   +  +   ++  + G +D N    +A  ++   +  V
Sbjct: 63  KTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTSDKNNMSQSAEEIKGLLDVLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
           + AN  D+G+Y+FSG ++S KP     T  
Sbjct: 123 SVANAEDDGRYVFSGSSTSVKPFTTDKTTG 152



 Score = 36.6 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                 F+ D+       N +  N  +R+  T+ ++V    +   + D+        + +
Sbjct: 139 STSVKPFTTDKTTGEIIYNGTTENKNFRV--TDTLEVEVFHDGSALTDVFNNIQKIVDAM 196

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
                  A + L      T  Q +  I      +G  +  ++     L +K        S
Sbjct: 197 KSG-DKDALSAL----QETNSQNIEIITNSMTNIGGQKNGVSAYDNVLSSKITDFAERKS 251

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               V    A + L+      + +   +  +QKLSILNY+
Sbjct: 252 NVEEVNMPEAVSNLNKTSIAYQAALQSSVMVQKLSILNYM 291


>gi|162418771|ref|YP_001604840.1| flagellar hook-associated protein FlgL [Yersinia pestis Angola]
 gi|162351586|gb|ABX85534.1| flagellar hook-associated protein 3 [Yersinia pestis Angola]
          Length = 307

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST ++   MN    + N+   K++++M+T Q      +     T +L+  +E+ +I + 
Sbjct: 3   VSTPTMSSTMNRFITQHNEKLEKINKQMMTQQRITLPSEDPIASTRLLQINREQANIKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S ++  L+    H+S++ K +  +   LV +      N      A  L    ES V
Sbjct: 63  SSNISGLSNSLTNQTGHVSAINKQLVSIKSSLVSINGNIKSNKDIAGVADELNYMLESVV 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKD 155
              N    EG+YLF+G  S+++P+     K+
Sbjct: 123 AGLNAKNSEGRYLFAGTASNKQPITFDSAKN 153


>gi|58582203|ref|YP_201219.1| flagellar hook-associated protein FlgL [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84624095|ref|YP_451467.1| flagellar hook-associated protein FlgL [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188576763|ref|YP_001913692.1| flagellar hook-associated protein FlgL [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188576955|ref|YP_001913884.1| flagellar hook-associated protein FlgL [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58426797|gb|AAW75834.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368035|dbj|BAE69193.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521215|gb|ACD59160.1| flagellar hook-associated protein 3 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521407|gb|ACD59352.1| flagellar hook-associated protein 3 [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 401

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 59/399 (14%), Positives = 119/399 (29%), Gaps = 46/399 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  ISTS ++ +             ++  ++ +GQ             + +  ++    
Sbjct: 1   MTDRISTSMMYSQSVASMGAKQARLNQIEAQLGSGQRLVTAKDDPVAAGTAVGLDRALAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I     + + V  RL   +  LS     +  +    V         +     A  L    
Sbjct: 61  ITRFGENANNVQNRLGLQENALSQAGDKMARVTELAVQANNSSLSPDDRKAIAAELTALR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKS 176
           +S V+ AN TD  G+YLF G      P               +K  +     F+ +    
Sbjct: 121 DSMVSLANSTDGTGRYLFGGTADGSAPFIKSSGNVTYNGDQTQKQVEVAPDTFVSDTLPG 180

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKF--SDDEYWANNWSNASDHNIKYRIKDTEGIDV 234
                 +           +              +    +W+ AS +++++   +T  +  
Sbjct: 181 SEIFMRIRTGDGTVDAHANAANTGTGLLLDFSRDISTGSWNGAS-YSVQFTAANTYEVRD 239

Query: 235 SANV-------------NMRGIRDIMFVAV----------------------IGTEFLSK 259
           S N              N  G+R  +  A                       +     S 
Sbjct: 240 STNAVVSTGTYKEGQDINAAGVRMRISGAPAVGDSFQIGASGSKDVFSTIDDMVGALNSD 299

Query: 260 NLTDGARNVLTKK---MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
            LT   +  +       +  + Q  S +I+ RA  G     I+     L++    + T +
Sbjct: 300 TLTAPQKASMINTLQSSMRDIAQASSKMIDARASGGAQLSAIDNANSLLESNEVTLKTTL 359

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           S    ++  +A  Q       ++ +  I  ++Q  S+ N
Sbjct: 360 SSIRDLDYASAIGQYQLEKASLQAAQTIFQQMQSSSLFN 398


>gi|16802748|ref|NP_464233.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           EGD-e]
 gi|47095272|ref|ZP_00232883.1| flagellar hook-associated protein FlgL, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224498788|ref|ZP_03667137.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           Finland 1988]
 gi|224501989|ref|ZP_03670296.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           R2-561]
 gi|254829363|ref|ZP_05234050.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           N3-165]
 gi|254830303|ref|ZP_05234958.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           10403S]
 gi|254900058|ref|ZP_05259982.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           J0161]
 gi|254911389|ref|ZP_05261401.1| flagellar hook-protein FlgL [Listeria monocytogenes J2818]
 gi|254935716|ref|ZP_05267413.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           F6900]
 gi|16410095|emb|CAC98784.1| lmo0706 [Listeria monocytogenes EGD-e]
 gi|47016343|gb|EAL07265.1| flagellar hook-associated protein FlgL, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258601776|gb|EEW15101.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           N3-165]
 gi|258608299|gb|EEW20907.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           F6900]
 gi|293589326|gb|EFF97660.1| flagellar hook-protein FlgL [Listeria monocytogenes J2818]
          Length = 291

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 64/150 (42%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+     +      ++ +  K   ++ +G+  +   +       IL +    + +   
Sbjct: 3   ISTNQQASSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPGATAQILSYNHVLSQLNRE 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+T++  LSSM   +  +   ++  + G +D +    +A  ++   +  +
Sbjct: 63  KTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTSDKDNMSQSAEEIKGLLDVLI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
           + AN  D+G+Y+FSG ++S KP     T  
Sbjct: 123 SVANSEDDGRYVFSGSSTSVKPFTTDKTTG 152



 Score = 36.6 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                 F+ D+       N +  N K+R+  T+ ++V    +   + D+        + +
Sbjct: 139 STSVKPFTTDKTTGEIIYNGTTENKKFRV--TDTLEVEVFHDGSAMTDVFNNIQKIVDAM 196

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
                  A + L      T  + +  I      +G  +  +      L +K        S
Sbjct: 197 KTG-DKDALSAL----QETNSKNIEIITNSMTNIGGQKNGVTAYDNVLSSKIVDFSERKS 251

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               V    A + L+      + +   +  +QKLSILNY+
Sbjct: 252 NVEEVNMPEAVSNLNKTSIAYQAALQSSVMVQKLSILNYM 291


>gi|148358813|ref|YP_001250020.1| flagellar hook associated protein type 3 FlgL [Legionella
           pneumophila str. Corby]
 gi|296106858|ref|YP_003618558.1| flagellar hook-associated protein 3 FlgL [Legionella pneumophila
           2300/99 Alcoy]
 gi|148280586|gb|ABQ54674.1| flagellar hook associated protein type 3 FlgL [Legionella
           pneumophila str. Corby]
 gi|295648759|gb|ADG24606.1| flagellar hook-associated protein 3 FlgL [Legionella pneumophila
           2300/99 Alcoy]
          Length = 411

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/409 (12%), Positives = 116/409 (28%), Gaps = 57/409 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ I++R         +   +L ++  +G               I   +Q  ++I   
Sbjct: 3   ISTNQIYQRGLDNLLTQQERLSRLQDQQASGIRVRTPSDDPVASAQIELIKQRISNIELL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
            ++       L   +  LS+    +  +    +               A   +      +
Sbjct: 63  QNNRQAADSALRLEEGILSNTVNSLHRLREIQIQSGNPSLSEEDRKTLAVEAQALLNQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN----------------GYFTKDSLAKKSFDQMLQG 168
            +AN  D  G Y+FSG  S  +P++                      SL     D     
Sbjct: 123 DYANTKDSNGSYMFSGSKSLTQPVSLNLSGQYVYNGDNTQRFQAVTTSLLVAVNDTGDNV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK----- 223
           F+   S +        V+             + +     + +   ++  S  N+      
Sbjct: 183 FMRIPSGNGRFAIRETVTPNTGTASVSSGSVINEAAFVPDNYTMTFALNSQGNLVVMVSG 242

Query: 224 ----------------------YRIK-------------DTEGIDVSANVNMRGIRDIMF 248
                                   I                +   +S   N      +  
Sbjct: 243 TLSGNVIPPSGLPDDAPLYQEGSAISFNGMEMVVSGLPKAGDSFSISPAKNESIFSTVQR 302

Query: 249 VAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNK 308
           +     +    ++   A      ++L+ +   L  I+  ++ LG     +        + 
Sbjct: 303 MINNLNKPYVSSVEKAATQTENNQLLAQIDSALGHILSVQSDLGARLNQLETAEKANNDY 362

Query: 309 NNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +I    + K   ++      +L+  +  ++ + +  T++Q LS+ N+L
Sbjct: 363 LDISAATLKKLREIDPVAVATELNLQLVNLQAAQLSFTRIQGLSLFNFL 411


>gi|294635620|ref|ZP_06714096.1| flagellar hook-associated protein 3 [Edwardsiella tarda ATCC 23685]
 gi|291091003|gb|EFE23564.1| flagellar hook-associated protein 3 [Edwardsiella tarda ATCC 23685]
          Length = 315

 Score = 56.3 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 113/337 (33%), Gaps = 38/337 (11%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
             +   +  ++  +M +G+            + ++   Q K+   +   +     +  S 
Sbjct: 10  VLDAQSEWQRIGAQMDSGKRVIVPSDDPLAASQLVGLNQAKSMNEQYGMARGYARQSTSM 69

Query: 79  SQAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQY 136
            ++ L  +  ++Q+    LV  +  G   ++     A  L    +  +  AN TD  G+Y
Sbjct: 70  EESVLQQVTNVMQNATPVLVDGMSSGTKSDDDRAAIATQLESMRDQLINLANSTDGNGRY 129

Query: 137 LFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDF 196
           +F+G  S   P         +A    D+ L   ++      ++    +V           
Sbjct: 130 IFAGYKSDTAPFA-KNATGGVAYSGGDKALTQQVDAARTMTVSHTGKQV----------- 177

Query: 197 IKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF 256
                            + +AS + IK   +    +      +++   D +   + G + 
Sbjct: 178 -----------------FLSASSNPIK---EPDGSVQNDIFASLQKAIDALKTPLAGADD 217

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
            +K   D   N         ++  L+ + + RA LG     ++              T I
Sbjct: 218 ATKQKVDDDLNS----ANRGLRNSLNNVSQVRAELGTQLNELDSLDAIGDENAITYKTRI 273

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           S    V+   A  + +     ++ SY + + +Q +S+
Sbjct: 274 SNVQDVDWTQAATEYALRQVSLQASYKVFSDMQGMSL 310


>gi|284801036|ref|YP_003412901.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           08-5578]
 gi|284994178|ref|YP_003415946.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           08-5923]
 gi|284056598|gb|ADB67539.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           08-5578]
 gi|284059645|gb|ADB70584.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           08-5923]
          Length = 291

 Score = 56.3 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 64/150 (42%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+     +      ++ +  K   ++ +G+  +   +       IL +    + +   
Sbjct: 3   ISTNQQASSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPGATAQILSYNHVLSQLNRE 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+T++  LSSM   +  +   ++  + G +D +    +A  ++   +  +
Sbjct: 63  KTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTSDKDNMSQSAEEIKGLLDVLI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
           + AN  D+G+Y+FSG ++S KP     T  
Sbjct: 123 SVANSEDDGRYVFSGSSTSVKPFTTDKTTG 152



 Score = 37.8 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 15/196 (7%)

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFS--DDEYWANNWSNASDHNIKYRIKDTEGID 233
           ++      +  S +A+++   +  L    +  DD  +  + S+ S           E I 
Sbjct: 97  AINGTSDKDNMSQSAEEIKGLLDVLISVANSEDDGRYVFSGSSTSVKPFTTDKTTGEIIY 156

Query: 234 VSANVNMRGIRD--------IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTV----QQGL 281
                N +  R             + +   F +      A     K  LS +     + +
Sbjct: 157 SGTTENKK-FRVTDTLEVEVFHDGSAMTDVFNNIQKIVDAMKTGDKDALSALQETNSKNI 215

Query: 282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
             I      +G  +  +      L +K        S    V    A + L+      + +
Sbjct: 216 EIITNSMTNIGGQKNGVTAYDNVLSSKIVDFSERKSNVEEVNMPEAVSNLNKTSIAYQAA 275

Query: 342 YMITTKLQKLSILNYL 357
              +  +QKLSILNY+
Sbjct: 276 LQSSVMVQKLSILNYM 291


>gi|54297189|ref|YP_123558.1| flagellar hook-associated protein FlgL [Legionella pneumophila str.
           Paris]
 gi|53750974|emb|CAH12385.1| flagellar hook-associated protein FlgL [Legionella pneumophila str.
           Paris]
          Length = 411

 Score = 56.3 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 50/409 (12%), Positives = 116/409 (28%), Gaps = 57/409 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ I++R         +   +L ++  +G               I   +Q  ++I   
Sbjct: 3   ISTNQIYQRGLDNLLTQQERLARLQDQQASGIRVRTPSDDPVASAQIELIKQRISNIELL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
            ++       L   +  LS+    +  +    +               A   +      +
Sbjct: 63  QNNRQAADSALRLEEGILSNTVNSLHRLREIQIQSGNPSLSEEDRKTLAVEAQALLNQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN----------------GYFTKDSLAKKSFDQMLQG 168
            +AN  D  G Y+FSG  S  +P++                      SL     D     
Sbjct: 123 DYANTKDSNGSYMFSGSKSLTQPVSLNLSGQYVYNGDNTQRFQAVTTSLLVAVNDTGDNV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK----- 223
           F+   S +        V+             + +     + +   ++  S  N+      
Sbjct: 183 FMRIPSGNGRFAIRETVTPNTGTASVSSGSVINEAAFVPDNYTMTFALNSQGNLVVMVSG 242

Query: 224 ----------------------YRIK-------------DTEGIDVSANVNMRGIRDIMF 248
                                   I                +   +S   N      +  
Sbjct: 243 TLSGNVIPPSGLPDDAPLYQEGSAISFNGMEMVVSGLPKAGDSFSISPAKNESIFSTVQR 302

Query: 249 VAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNK 308
           +     +    ++   A      ++L+ +   L  I+  ++ LG     +        + 
Sbjct: 303 MINNLNKPYVSSVEKAATQTENNQLLAQIDSALGRILSVQSDLGARLNQLETAEKANNDY 362

Query: 309 NNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +I    + K   ++      +L+  +  ++ + +  T++Q LS+ N+L
Sbjct: 363 LDISAATLKKLREIDPVAVATELNLQLVNLQAAQLSFTRIQGLSLFNFL 411


>gi|291276907|ref|YP_003516679.1| flagellar hook-associated protein 3 [Helicobacter mustelae 12198]
 gi|290964101|emb|CBG39945.1| flagellar hook-associated protein 3 [Helicobacter mustelae 12198]
          Length = 829

 Score = 56.3 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 3/149 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  +      +MN     L     + + ++ +G    +G Q  +     L+     N
Sbjct: 1   MRITFGTKY---NQMNYHQNTLQDKLNETNNKIASGLKIKHGYQDSSVYNQDLKLGYLSN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +++ +        +   +   LS M K +      ++               A  L+  
Sbjct: 58  TLSQGIDVAKSAHTKTLNADKTLSEMSKALVQFKTKMIQAANNVHSETSREAIALDLKAI 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLN 149
               +  AN +  G+Y+F G      P +
Sbjct: 118 KNHIINMANTSIGGEYIFGGSKVDRPPFD 146



 Score = 43.5 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
           +  +   RN+  +  ++ +   LS  IE+  VL  S   I      +  +N I+ T I  
Sbjct: 731 EGYSPDMRNIGIQNGITVLDH-LSDHIEKMIVLNGSHSRI---LDDIVQRNEILKTQIES 786

Query: 319 S----IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                IGV+    + + S L          T+K+ ++S++NYL
Sbjct: 787 QKAENIGVDIAETYNKFSNLNTNYNAVLSSTSKINQMSLVNYL 829


>gi|328958294|ref|YP_004375680.1| flagellar hook-associated protein FlgL [Carnobacterium sp. 17-4]
 gi|328674618|gb|AEB30664.1| flagellar hook-associated protein FlgL [Carnobacterium sp. 17-4]
          Length = 299

 Score = 56.3 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 97/317 (30%), Gaps = 62/317 (19%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
           +V+ IL+         +   + +   +  +   + LSS  K +Q +   +     G   +
Sbjct: 38  KVSKILDLNNSIIQNDQYKKTINDAIQWTNVQDSALSSATKSLQRIKTLIQYSANGTLSS 97

Query: 108 NKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ 167
                N   +    +  V   N    G+Y+F+G N++EKP             S D  + 
Sbjct: 98  EDRQANKAEIESEIQGVVDAFNTNFGGRYVFAGKNTTEKPFE---------VTSVDGEIT 148

Query: 168 GFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIK 227
           G                                            + +   + N+   I 
Sbjct: 149 GI-----------------------------------------TYSGTAEGNGNLSREIA 167

Query: 228 DTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVL-------TKKMLSTVQQG 280
                 VS  +N  G R+ M                     L          +L    Q 
Sbjct: 168 PG----VSVELNTDG-RNFMNAQNADGSDDLGTFFSEVLTALDEDDTGKLSSLLDRADQE 222

Query: 281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEM 340
           +  ++  R+  G     +N       ++   + T +S++  ++    + Q +   +  + 
Sbjct: 223 IENVVSNRSKTGSIFNRLNATLERNDSEKLNLKTMLSENQDIDLAEKYMQFTMEKSAYQA 282

Query: 341 SYMITTKLQKLSILNYL 357
           S  + T++ + SIL+YL
Sbjct: 283 SLSMGTQILQTSILDYL 299


>gi|161503728|ref|YP_001570840.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865075|gb|ABX21698.1| hypothetical protein SARI_01813 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 317

 Score = 55.9 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 112/349 (32%), Gaps = 40/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++E+          + +KL E+M +G+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYEQNMSGITNSQAEWMKLGEQMSSGKRVTNPSDDPIAASQAVVLSQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  ++ LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  +   P +         +K+  Q             +      
Sbjct: 123 NLANSTDGNGRYIFAGYKTEAAPFDQATGNYHGGEKNVTQ------------QVDSARTM 170

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V      Q+ + +        D      N     D  I         ++     N     
Sbjct: 171 VIGHTGAQIFNSLTSNAVPEPDGTDSEKNLFVMLDTAIAA-------LNTPVEGND---- 219

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                           +          K    ++  L+ ++  RA LG     ++     
Sbjct: 220 ----------------VEKEKAAAAIDKTSRGLKNSLNNVLTVRAELGTQLGELSTLDAL 263

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++       +S  + V+ ++  +        ++ SY   T +Q +S+
Sbjct: 264 GSDRALGQKLQMSNLVDVDWNSVISSYVMQQAALQASYKTFTDMQGMSL 312


>gi|283780144|ref|YP_003370899.1| flagellin domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283438597|gb|ADB17039.1| flagellin domain protein [Pirellula staleyi DSM 6068]
          Length = 1003

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 52/147 (35%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
           TT  S+     R+    +      ++L  ++ TG+      +        +  +Q     
Sbjct: 9   TTRTSSILAQTRLTAQLQADQLSILRLQSQISTGRRIALPSEDAPASQRAIHLQQLLELK 68

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
           A+ L +       L  + + ++++   +  +    + +    +        A  +  + E
Sbjct: 69  AQALVNLDTSQSYLDATDSAIANVSSTLNQIRSTALGVANTTSSETTRAAAAAEVSRAIE 128

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLN 149
             V  AN    G+YLF+G  ++  P  
Sbjct: 129 QLVDVANQNFRGRYLFAGSKTTTVPFT 155



 Score = 44.7 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 109/325 (33%), Gaps = 15/325 (4%)

Query: 42   GLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILL 101
            G+ L   +   +      + I     +    + R++ +   + +  ++          L 
Sbjct: 685  GVALDIDIDGAVTVGDVIDRINNHALNTG--SGRVTAALNRVGNGIELTASQSSSPGTLS 742

Query: 102  EGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL-FSGINSSEKPLNGYFTKDSLAKK 160
              K   ++   + G++    +S  T    T     L F+G NS    +       SL+  
Sbjct: 743  ITKAFQSEAAWDLGLIPTGEQSITTSTAATVASARLDFAGANSDLL-VTAGIAGSSLSGV 801

Query: 161  SFDQMLQGFLEENSKSLLAGQ-----HLEVSSMNAQQMTDFIK---QLEDKFSDDEYWAN 212
            +   +     +  + +  AG       L+ S+ +A  + D I                 N
Sbjct: 802  AIRFVDSAVGDVATATYDAGTRELTIALDASATSATTIRDAINLEGTFSAALDATSDPTN 861

Query: 213  NWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKK 272
            + S          I      +V    N            +     + N  D A      +
Sbjct: 862  DGSGVIGTTGVVGITSGGTAEVLTGANTYHQEVQGVFNTLIQLRDAINNFDLAS---IDR 918

Query: 273  MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLS 332
             L ++   L  I   RA +G   + ++  R  L+++   +   +SK I V+   A ++L+
Sbjct: 919  SLESLDVDLDRINFGRAEIGARGQALDLLRTRLEDEEVTLKDSLSKEIEVDITQAISELA 978

Query: 333  TLINKIEMSYMITTKLQKLSILNYL 357
                 +E S  +   L + ++LNYL
Sbjct: 979  ARQASLEASMQLMATLFQTTLLNYL 1003


>gi|153825353|ref|ZP_01978020.1| flagellar hook-associated protein FlgL [Vibrio cholerae MZO-2]
 gi|149741037|gb|EDM55106.1| flagellar hook-associated protein FlgL [Vibrio cholerae MZO-2]
          Length = 397

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 126/407 (30%), Gaps = 69/407 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q++  
Sbjct: 5   ISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLA----THYIQNVGQQEEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + L +  LV  RL   +  +S+ ++        ++ ++ G          A +L++  
Sbjct: 61  LRQYLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+  AN+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 NNFINLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGDDYQRKMKISNSLEIPFNNP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-----SMNAQQMTDFIKQLEDKFSDDEY 209
            S            +    +    +   LE +        A     F+   E K  +   
Sbjct: 181 GSKVFMEIPNPFGSYEPNYALQEGSELLLERAVNLNPDDTASYRVTFVDMPEGK--NGYQ 238

Query: 210 WANNWSNAS---------------DHNIKYRIKDTEGID----VSANVNMRGIRDIMFVA 250
              N S                  +  +K +I   + I+     + +V     RD +  A
Sbjct: 239 LERNGSVVQAGEFDAKTGIQFEELNIQVKGQISKGDAIELRPRTTFSVFDT-FRDAIRYA 297

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
                    +++D +      +++         + + R  +G     ++ +    ++   
Sbjct: 298 -------EGSVSDASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKI 350

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    S    ++   A  + +     +E S     K + L++ NY+
Sbjct: 351 SLAKSKSTFEDLDYAEAVIEFNENSRALEASQKAFGKTKDLTLFNYI 397


>gi|15606765|ref|NP_214145.1| flagellar hook associated protein FlgL [Aquifex aeolicus VF5]
 gi|2983978|gb|AAC07524.1| flagellar hook associated protein FlgL [Aquifex aeolicus VF5]
          Length = 422

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/408 (12%), Positives = 137/408 (33%), Gaps = 74/408 (18%)

Query: 21  ELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQ 80
           ++ K+    + E+V+G+         A    IL  + E + +++   +       LS + 
Sbjct: 18  KIRKNVEDKYLEIVSGKKIQNPSDDPASTNQILNLKTELSKLSQFSRNRLFADTVLSYAD 77

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
             L+ ++  ++ +   ++ L       ++    A    ++ +  +  AN      Y+FSG
Sbjct: 78  TLLAGIEDRLKSLYSKVIQLSNQVHTPDQLKAAAKEFEEALKLLLNTANEKVGNNYIFSG 137

Query: 141 INSSEKPLN-------------------GYFTKDSLAKKSFDQMLQGF------------ 169
              + KP +                   GY +   L   +    + G             
Sbjct: 138 NALTTKPFDENTLTYNGGNAEFEILIDEGYKSPVILNGGNIFDGIGGIGETYTVYEIEIT 197

Query: 170 -LEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
             ++   +   G  ++   +    + + I++L++ F D           SD     R++ 
Sbjct: 198 GFDDTPDNDDTGFRVDSIEIRGDNLDEIIQKLKENFGDSMN--IYLYEKSDGTPIIRLEA 255

Query: 229 TEGIDVSANVNMRGIRDIMFVAVIGTE------------------------FLSKNLTDG 264
                V  N+N    R+I   +++                           F    +++ 
Sbjct: 256 NRDFTV-TNINNTNPREIDTNSLLINRWNATRNIFETIKFIADELSEGRLLFSGPLISED 314

Query: 265 ARNVLT---------------KKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
           + +  +                  +  ++Q +  II  RA +G   K +  E+ + +++ 
Sbjct: 315 SNDYFSNNRPDYQVISKPFNKSTEVKLMEQSVERIINFRAKIGSILKELRNEQNYQEDRK 374

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +++   S++   +   + ++        +    +    + +SIL+Y+
Sbjct: 375 LVLEKQKSEAEDADLAKSISEYERYRLAYDAIMKLFVNHKNMSILDYI 422


>gi|148256816|ref|YP_001241401.1| hypothetical protein BBta_5535 [Bradyrhizobium sp. BTAi1]
 gi|146408989|gb|ABQ37495.1| hypothetical protein BBta_5535 [Bradyrhizobium sp. BTAi1]
          Length = 623

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 85/270 (31%), Gaps = 12/270 (4%)

Query: 93  MVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYF 152
            V    +       N    IN      +  S +   + T +   +  G+ +        F
Sbjct: 361 TVNGQTLTFVASGANGNNQINVTDSVQTLLSKIDALSGTSKPSTVSGGVITLRTDDAASF 420

Query: 153 TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN 212
           +  S    +F     GF    + +    +       +A  + +      + ++ +     
Sbjct: 421 SVSSSNAGAF--AALGFSGTVTAATPPLRVSGSPLGSATSLVNGSATTVNWYTGNSGPGT 478

Query: 213 NWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKK 272
             S++       RI   + I   A  N   IR+++    +     +      A   +   
Sbjct: 479 ARSSS-----TIRIDTAQSIQFGAQANELAIRNLVQQTAVYAAVNTPPAATNAGPQIAAL 533

Query: 273 MLSTVQQ-----GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
                       G   I + +     ++  + +           + + + ++ G+ Q+  
Sbjct: 534 SQRIAANLTPQLGQQSISDIQTDFANAQTTMKDATARQTQAKAAMQSLVDQTEGISQNEV 593

Query: 328 HAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +Q+  L   ++ SY  T  L +LS++ +L
Sbjct: 594 ASQILQLQTNLQASYQTTAMLAQLSLVKFL 623



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 60/188 (31%), Gaps = 4/188 (2%)

Query: 5   GISTSSIFERMNILTKE-LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
            IS+ +    +  L+   +      L  ++ +G  ++    +G      +    + ++I+
Sbjct: 2   SISSINYGSSLLGLSVRNITSQLADLSTQLSSGTKANNYAGMGPDEGFAIAARAQLSNIS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               + + V   +      L S+ KI   +        +  T + +          +  +
Sbjct: 62  AFSLTMTHVNTVIGAVNTSLQSLSKIGGQVQSGASATPQNLTSSGQ-TTGQQTASSNLSA 120

Query: 124 FVTFANMTDEGQYLFSGINSSEKPL--NGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            V   N     +++FSG  +    L         +  +    Q++    + +      G+
Sbjct: 121 IVGILNTQVGDRFIFSGSATDRPALASADDILNGTNTQAGLKQVIAERRQADLGLNGLGR 180

Query: 182 HLEVSSMN 189
               +S  
Sbjct: 181 LNLSASAT 188


>gi|296102901|ref|YP_003613047.1| flagellar hook-associated protein FlgL [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057360|gb|ADF62098.1| flagellar hook-associated protein FlgL [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 317

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 107/353 (30%), Gaps = 48/353 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++++      +     +   E+M TG+  +         +  +   Q ++  ++ 
Sbjct: 3   ISTQMMYDQNMRGITDSQSKWLSYGEQMSTGKRVNRPSDDPIAASQAVVLSQSQSQNSQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S     LS +   +      LV    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEDNVLSQVNAAITSAKEKLVNAGNGTLSDDDRLSLASDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
             AN  D  G+Y+F+G  +   P +     Y        +  D      +          
Sbjct: 123 NLANSADGNGRYIFAGYKTEAPPFDSVTGDYNGGTQAISQQVDTARNMVISH-------- 174

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                     QQ+ + I     +     Y   N     D  I                  
Sbjct: 175 --------TGQQIFESITSNAKELPGGGYGETNMFKILDSAI------------------ 208

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                    + +     + +     +N         +    + ++   A +G     + +
Sbjct: 209 ---------SALKVPVDNDSAAAEVQNKAISDAQIGITNTQNNVLTVVADVGTKMNELEK 259

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                 ++       +S  + V+ ++A +        ++ SY   + +Q +S+
Sbjct: 260 LDNLGDDRALGQTQQMSDLVDVDWNSAISSYIMQQAALQASYKAFSDMQGMSL 312


>gi|332533168|ref|ZP_08409037.1| flagellar hook-associated protein FlgL [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037450|gb|EGI73904.1| flagellar hook-associated protein FlgL [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 406

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/398 (13%), Positives = 114/398 (28%), Gaps = 66/398 (16%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSN-SLVTKRLS 77
             E  +   +  E++ T +             S      +K    E+   N ++++ RL+
Sbjct: 16  ILENQQGVSRAQEQVNTQKRI-LSTSDDPSAMSQASLYSDKIQANEQYEKNITMLSSRLT 74

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQY 136
             +  L +++  ++      +    G   +      A  L+    + +   N  T++G+Y
Sbjct: 75  NEETVLDNIKSSLERAHTLTIQAGNGAYSDIDREGIAEELKSIQSTVLDLMNAKTEDGKY 134

Query: 137 LFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF--------------------------- 169
           LFSG      P   Y + +   + + DQ L                              
Sbjct: 135 LFSGYQ-DNTPAYSYNSANQKYEYAGDQGLHKIKIAEGIDIKSSDNGFDVFEKVQARLNV 193

Query: 170 LEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDT 229
              +          +V      Q   F     D          N    +     Y ++  
Sbjct: 194 SSNDGVVSGGVLDSKVYVKEQGQFDSFHSAEYDP--SGANNTYNVITTAGSPGTYTVEQG 251

Query: 230 EGI----------------DVSANVNMRGIRDIMFV-----------AVIGTEFLSKNLT 262
             +                ++S +    G  D               + + T     +L 
Sbjct: 252 GNVLASGDLSDGLVKFNGLEISISPVATGQVDFTLGVPQKENVLNTMSNLITGLKDISLD 311

Query: 263 DGARNVLTKKMLSTVQQGLSGIIEQRAVLG---ISEKNINEERVFLQNKNNIIDTYISKS 319
             A   +    L  +  G + +   +A LG    +   I++    L   N          
Sbjct: 312 QDAFEQVIADGLLQLDNGRNKVSLTQAGLGGRINAADKISQSNAELDINNKAARA---DL 368

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + ++   A  +L+     ++ S     +L  LS+ +YL
Sbjct: 369 VELDMAEAITELTKQETALQASQATFGRLANLSLFDYL 406


>gi|307609984|emb|CBW99513.1| flagellar hook-associated protein FlgL [Legionella pneumophila
           130b]
          Length = 411

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/409 (12%), Positives = 116/409 (28%), Gaps = 57/409 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ I++R         +   +L ++  +G               I   +Q  ++I   
Sbjct: 3   ISTNQIYQRGLDNLLTQQERLSRLQDQQASGIRVRTPSDDPVASAQIELIKQRISNIELL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
            ++       L   +  LS+    +  +    +               A   +      +
Sbjct: 63  QNNRQAADSALRLEEGILSNTVNSLHRLREIQIQSGNPSLSEEDRKTLAVEAQALLNQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN----------------GYFTKDSLAKKSFDQMLQG 168
            +AN  D  G Y+FSG  S  +P++                      SL     D     
Sbjct: 123 DYANTKDSNGSYMFSGSKSLTQPVSLNLSGQYVYNGDNTQRFQAVTTSLLVAVNDTGDNV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK----- 223
           F+   S +        V+             + +     + +   ++  S  N+      
Sbjct: 183 FMRIPSGNGRFAIRETVTPNTGTASVSSGSVINEAAFVPDNYTMTFALNSQGNLVVMVSG 242

Query: 224 ----------------------YRIK-------------DTEGIDVSANVNMRGIRDIMF 248
                                   I                +   +S   N      +  
Sbjct: 243 TLSGNVIPPSGLPDDAPLYQEGSAISFNGMEMVVSGLPKAGDSFSISPAKNESIFSTVQR 302

Query: 249 VAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNK 308
           +     +    ++   A      ++L+ +   L  I+  ++ LG     +        + 
Sbjct: 303 MINNLNKPYVSSVEKAATQTENNQLLAQIDSALGCILSVQSDLGARLNQLETAEKANNDY 362

Query: 309 NNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +I    + K   ++      +L+  +  ++ + +  T++Q LS+ N+L
Sbjct: 363 LDISAATLKKLREIDPVAVATELNLQLVNLQAAQLSFTRIQGLSLFNFL 411


>gi|146293683|ref|YP_001184107.1| flagellar hook-associated protein FlgL [Shewanella putrefaciens
           CN-32]
 gi|145565373|gb|ABP76308.1| flagellar hook-associated protein 3 [Shewanella putrefaciens CN-32]
          Length = 403

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/408 (12%), Positives = 137/408 (33%), Gaps = 63/408 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEWEQEKN 60
           +S++ IF +      +    + K+ E++ +G+       D    LG          Q   
Sbjct: 3   LSSAQIFNQSITSVLQKQTATSKILEQLSSGKKVNTAGDDPVAALGID-----NLNQRNA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + + +    T RL+ +++ L S + +   +   ++  + G   +++  + A  ++ S
Sbjct: 58  LVDQFMKNIDYATNRLAVTESKLGSAENLASSIREQVMRAVNGTLADSERQMIADEMKGS 117

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
            E  ++ AN  D  G Y+FSG ++ ++P     +       S D  +Q  L ++  +L  
Sbjct: 118 LEELLSIANSKDESGNYMFSGYSTDKEPFAFDNSTPPKIVYSGDSGIQNSLVQSGVALGT 177

Query: 180 GQHLEVSSM--------------------------------------------------N 189
               + + M                                                   
Sbjct: 178 NVPGDSAFMKAPNGLGDYSVNYLASQQGEFSVKTAKIADASTYLADTYTFNFIDNGLGGT 237

Query: 190 AQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFV 249
             Q+ D         ++ +       N  +  +  +    +   +     +     I   
Sbjct: 238 NLQVLDSANNPVANIANFDATTPVSFNGIEVKVSGKPSAGDSFTMEPQAEVSIFDTISSA 297

Query: 250 AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
             +  +  S N   G       ++L+ +  G++ I   R+V G + K +   +     + 
Sbjct: 298 IALIEDPNSANTPQG--RAQLAQILNNIDSGVNQISSARSVAGNNLKAVESYKETHTEEK 355

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  + +S+   ++  +A  +       +     + +K+  +S+ +Y+
Sbjct: 356 VVNTSALSRLEDLDYASAITEFEKQQLALNAVSSVFSKVGSVSLFDYI 403


>gi|153947262|ref|YP_001399641.1| flagellar hook-associated protein FlgL [Yersinia pseudotuberculosis
           IP 31758]
 gi|152958757|gb|ABS46218.1| flagellar hook-associated protein 3 [Yersinia pseudotuberculosis IP
           31758]
          Length = 305

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 116/354 (32%), Gaps = 57/354 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST ++   MN    + ++   K++++M+T Q      +     T +L+  +E+ +I + 
Sbjct: 3   ISTPTMSSAMNKFITQRHESLDKINKQMMTQQRITLPSEDPIASTRLLQINREQANIKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   ++  L+    H+S++   +  +   L+ +      N      A  +    E+ V
Sbjct: 63  TGNIDGLSNSLTHQVGHVSAINTQLVAIKDRLLSISNDVKSNKDISGVADEMNYMLEAVV 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N    EG+YLF+G  S+ KP+      ++                NSK+   G    
Sbjct: 123 AELNAKNSEGRYLFAGTASNTKPITFDRNNNTYT-----------FVGNSKNRQTGVGEG 171

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V       +      +    +                                       
Sbjct: 172 VKITENVHLQSGFTDVNGDLAT-------------------------------------- 193

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN---INEE 301
            +  +  +  +     L   +      +M+  +      +      LGI + +   + + 
Sbjct: 194 -LNKLKKLCDDIKQNTLPSTSHTTAINEMMGLIDSASDHMGVTLTELGIRQTHGKLLQKN 252

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
              ++  N  I       +G++   ++ +L  L+     +Y    ++  LS+ N
Sbjct: 253 HEEMELSNITIK---ENLVGLDLAESYMELMNLMAVTNANYTTFKQINSLSLFN 303


>gi|317130314|ref|YP_004096596.1| flagellar hook-associated protein 3 [Bacillus cellulosilyticus DSM
           2522]
 gi|315475262|gb|ADU31865.1| flagellar hook-associated protein 3 [Bacillus cellulosilyticus DSM
           2522]
          Length = 394

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/395 (10%), Positives = 123/395 (31%), Gaps = 47/395 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ S +         +  +    +  ++ TG+      Q      + + +  +     + 
Sbjct: 3   VTQSMLTNSSLRHLSQSYQTLHDIQNQLATGKKISRASQDPVIAMNGMRYRTQVVETEQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + V   +  + A L  +   +  +    V       ++ +    +  +    E   
Sbjct: 63  NRNLTEVYNWMENADATLDQVTSTMHRIRELAVQASNDTYESTQRANISKEIEQLREHLQ 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
           + AN     +Y+F+G N++  PL+    + ++   + ++ L      N  +  A     V
Sbjct: 123 SLANTKANNKYIFNGTNTTNAPLD--ADQMNVGFNAIEEALADLP--NFNADEAVPFTHV 178

Query: 186 SSMNAQQMTDFIKQLEDKFSDD-EYWANNWSNASDHNIKYRI---------KDTEGID-- 233
            + N+ +     K  +     D      + + A D                   E +   
Sbjct: 179 LTHNSGRYELVEKNDDGYIFQDVNNPNKSITVAVDGEGNPESFTHAHTYVNNAGETVTDT 238

Query: 234 -------------VSANVNMRGIR-DIMFVAVIGTEFLSKNL-----------------T 262
                         S + N + +  +++    + T     N+                  
Sbjct: 239 KDLKERQFVVSRLDSVSTNTQKVEIELLKGVNVATNINPSNVFSTDFFGDIYQLEKALND 298

Query: 263 DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322
             A     +++++   + +  ++ +RA LG     +      ++ +  I    +S +   
Sbjct: 299 PAATGKELEELIANFDRQIDKVVNERAELGARYNRVEMIDDRMKEQEVIARRILSNNEDA 358

Query: 323 EQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +       L +  N    +     ++ + +++++L
Sbjct: 359 DIEKVITNLLSSENVHRAALSSMGRIMQPTLMDFL 393


>gi|169826734|ref|YP_001696892.1| flagellar hook-associated protein 3 [Lysinibacillus sphaericus
           C3-41]
 gi|168991222|gb|ACA38762.1| Flagellar hook-associated protein 3 (HAP3) [Lysinibacillus
           sphaericus C3-41]
          Length = 300

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/355 (9%), Positives = 110/355 (30%), Gaps = 59/355 (16%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
           T  + +S++   +NI   +      KL +++ +G                + + ++   +
Sbjct: 4   TQSMLSSNMLRNLNISYGK----MSKLQDQINSGSKITRPSDDPVIAVKGMGYRRDLAKV 59

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            +   +    +  L ++   L+ + + ++ +   ++        +         +    +
Sbjct: 60  EQYTRNTITASSWLDSTDESLNQVGEQMKRVRELVIQAATDSNTSEDRDKIKKEIDQIRQ 119

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
                 N    G Y+FSG  ++E    G     +  ++S    +   ++ +  +      
Sbjct: 120 QLQDVGNTNIGGSYIFSGTRTNEPLFIGGAINPNTNQESVKVEIYDGIQLSVNTPGKDLF 179

Query: 183 LEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242
             +  M  + ++D +                             K  E I          
Sbjct: 180 NNIDDMMGK-ISDLLGDP-------------------------TKTGEEI---------- 203

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
                  A +     S    D             +    + ++E +A +G  +  +    
Sbjct: 204 -------ASMLGGVSSSTTNDD------------ITAMHNKVLEAQADIGARQNRVEMME 244

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             L  +   +   +  +  V+   A  ++ T  +  + +  + +K+ + ++++++
Sbjct: 245 NRLGVREVNVTKQLRDNESVDYAKAITEMVTHESIHQAALSVGSKIIQQTLVDFI 299


>gi|325474916|gb|EGC78102.1| flagellar hook-associated protein 3 [Treponema denticola F0402]
          Length = 415

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/403 (11%), Positives = 115/403 (28%), Gaps = 64/403 (15%)

Query: 14  RMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVT 73
            M      L+  + ++  +    Q  D  +  G      + ++     +     +   + 
Sbjct: 17  SMRNQESRLHNLNNQIQSQRRINQLRDDPVSAGH----SVRYKSYLARLERFEKNTKTLR 72

Query: 74  KRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN-MTD 132
            +  +++ ++++  ++VQ +    V    G    +     A    +  +  V   N +  
Sbjct: 73  DQYMSAETYMNNSLQVVQRLRELSVQGANGTYTPDDLKDMAAEADELLKELVQNGNAVNS 132

Query: 133 EGQYLFSGINSSEKP----LNGYFTKDSLAKKSF-----------DQMLQGFLEENSKSL 177
           +G  +FSG  S  +P    +       S                 +     F+  +    
Sbjct: 133 DGVRVFSGTKSFTEPFETVMGDVDGAGSALITQVRYNGTVDSKEVETDELSFMRADQAGN 192

Query: 178 LAGQHLEVSSMNAQQMTDFI---------KQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
                     ++     +F+           +E      +      S  +D     +   
Sbjct: 193 RVFWAERQILISETDARNFVIKEDTSIEVDGVEIPLIAGDNVYAIMSKINDSGAAVKASL 252

Query: 229 TEGIDVSANVNMRGIRDI----MFVAVIGTEFL-------------------SKNLTDGA 265
            + I    N+     R +       + + +E                       +L D A
Sbjct: 253 -DPITSGLNLTTTDARQLWLRDAEGSTVLSELGLIKAEQRPPYNLANSVRVSGGSLFDAA 311

Query: 266 -----------RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
                      +  L  K+L  + +G+  +  + A  G            +  +   +  
Sbjct: 312 IAVRDAFLSGDQEALGGKVLGGLDEGIHNLTTRMAETGSKYSRAEVILARIDTQTLNVTA 371

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             S+   ++   A   L    +  + S  +  +L + S+LNYL
Sbjct: 372 AESREADLDITKAITDLKMFEHTHQASLSVLGRLYRDSLLNYL 414


>gi|307945686|ref|ZP_07661022.1| putative flagellin and related hook-associated protein [Roseibium
           sp. TrichSKD4]
 gi|307771559|gb|EFO30784.1| putative flagellin and related hook-associated protein [Roseibium
           sp. TrichSKD4]
          Length = 524

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 7/239 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M    I TS     +      L  +  +   ++ +G+ S     LG      LE  Q+ N
Sbjct: 1   MAIESIGTS--RSYLTKQLVSLKGNLTEKTSQLASGKVSQTYGGLGDNRLLDLELNQKVN 58

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I+    + + V   + +    L  ++ +  D    L +      ++ +           
Sbjct: 59  RISSYQETITQVNLHIKSLNVTLERLEDLRLDTKSALDLNDYELQNDGQTRT-QATAEVL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFT--KDSLAKKSFDQMLQGFLEENSKSLL 178
               ++  N    G YL+ G ++ E P+    +  + S  +    Q++  ++  N  S  
Sbjct: 118 LHEAISLLNTEVAGYYLYGGTDAYENPVADVDSIMEGSGDRAGLKQVMNEYIAANLGSDK 177

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSD--DEYWANNWSNASDHNIKYRIKDTEGIDVS 235
            G+    + +     T  I +              ++ +NAS       I D+  I+ +
Sbjct: 178 LGRLEVPALVAPTASTITITEDGAHDFGLKLSSVTSDLANASITQPTGAIPDSLSIEFT 236



 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 90/284 (31%), Gaps = 34/284 (11%)

Query: 99  ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLA 158
            L  G T    F + A    +  ++FV  A+  +    L + I    +       K + +
Sbjct: 250 TLPPGHTKPVSFELAADTTGEGVDTFVIGADTDETAANLRAKILEKIEEQANTSLKAAAS 309

Query: 159 KKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNAS 218
           + + DQ    F       +        +++             + +  +     +    +
Sbjct: 310 EWAGDQFFDTFGGATPMRVDGPPFESATAL-----ISGASTTVEWYVGENTSTTD----A 360

Query: 219 DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTE--------FLSKNLTDGARNVLT 270
             +   R+ D   +   A  N +G+ D+M                F      +  + +L 
Sbjct: 361 RRDKNARVDDNLNVSYGARANEKGLSDVMKSLATFVAADFSTDVAFTGSETPEEKKEMLA 420

Query: 271 KK-----------------MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
            +                 ++       SGI++    + I+ + + +         +   
Sbjct: 421 AQERIDKLHYGEFVQRFRSVVQPDVADQSGIVDISTEISIAFRTVQDTDSRHTQMKSTYS 480

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             I +  GV++     ++  L   +E SY  ++ +  L++ +Y+
Sbjct: 481 ATIDEIEGVDKELLAVEILQLQTNLEASYRASSIVFNLNLADYI 524


>gi|222823826|ref|YP_002575400.1| flagellin family protein [Campylobacter lari RM2100]
 gi|222539048|gb|ACM64149.1| flagellin family protein [Campylobacter lari RM2100]
          Length = 744

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 39/97 (40%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
            E E  +I + +       +    +   + ++ ++++     L                A
Sbjct: 52  LEYELANIGQVIQGTQSAMEMAKNTDTAIKNITELLEKFKTLLTKAASDGNSQTSREAIA 111

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGY 151
             L+   +S V  AN +  GQYLF+G N++ KP + +
Sbjct: 112 KELKLIKDSIVNIANTSINGQYLFAGSNTATKPFDKF 148


>gi|15642189|ref|NP_231821.1| flagellar hook-associated protein FlgL [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121726564|ref|ZP_01679813.1| flagellar hook-associated protein FlgL [Vibrio cholerae V52]
 gi|147674282|ref|YP_001217707.1| flagellar hook-associated protein FlgL [Vibrio cholerae O395]
 gi|153213628|ref|ZP_01948901.1| flagellar hook-associated protein FlgL [Vibrio cholerae 1587]
 gi|153817065|ref|ZP_01969732.1| flagellar hook-associated protein FlgL [Vibrio cholerae NCTC 8457]
 gi|153820859|ref|ZP_01973526.1| flagellar hook-associated protein FlgL [Vibrio cholerae B33]
 gi|153829327|ref|ZP_01981994.1| flagellar hook-associated protein FlgL [Vibrio cholerae 623-39]
 gi|227082314|ref|YP_002810865.1| flagellar hook-associated protein FlgL [Vibrio cholerae M66-2]
 gi|229507733|ref|ZP_04397238.1| flagellar hook-associated protein FlgL [Vibrio cholerae BX 330286]
 gi|229512072|ref|ZP_04401551.1| flagellar hook-associated protein FlgL [Vibrio cholerae B33]
 gi|229513834|ref|ZP_04403296.1| flagellar hook-associated protein FlgL [Vibrio cholerae TMA 21]
 gi|229519208|ref|ZP_04408651.1| flagellar hook-associated protein FlgL [Vibrio cholerae RC9]
 gi|229522139|ref|ZP_04411556.1| flagellar hook-associated protein FlgL [Vibrio cholerae TM
           11079-80]
 gi|229528805|ref|ZP_04418195.1| flagellar hook-associated protein FlgL [Vibrio cholerae 12129(1)]
 gi|229607237|ref|YP_002877885.1| flagellar hook-associated protein FlgL [Vibrio cholerae MJ-1236]
 gi|254286495|ref|ZP_04961452.1| flagellar hook-associated protein FlgL [Vibrio cholerae AM-19226]
 gi|254849319|ref|ZP_05238669.1| flagellar hook-associated protein FlgL [Vibrio cholerae MO10]
 gi|255747111|ref|ZP_05421056.1| flagellar hook-associated protein FlgL [Vibrio cholera CIRS 101]
 gi|262161345|ref|ZP_06030455.1| flagellar hook-associated protein FlgL [Vibrio cholerae INDRE 91/1]
 gi|262167784|ref|ZP_06035486.1| flagellar hook-associated protein FlgL [Vibrio cholerae RC27]
 gi|262191682|ref|ZP_06049858.1| flagellar hook-associated protein FlgL [Vibrio cholerae CT 5369-93]
 gi|298500432|ref|ZP_07010237.1| flagellar hook-associated protein 3 [Vibrio cholerae MAK 757]
 gi|9656745|gb|AAF95335.1| flagellar hook-associated protein FlgL [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121631017|gb|EAX63396.1| flagellar hook-associated protein FlgL [Vibrio cholerae V52]
 gi|124115827|gb|EAY34647.1| flagellar hook-associated protein FlgL [Vibrio cholerae 1587]
 gi|126512333|gb|EAZ74927.1| flagellar hook-associated protein FlgL [Vibrio cholerae NCTC 8457]
 gi|126521651|gb|EAZ78874.1| flagellar hook-associated protein FlgL [Vibrio cholerae B33]
 gi|146316165|gb|ABQ20704.1| flagellar hook-associated protein FlgL [Vibrio cholerae O395]
 gi|148875168|gb|EDL73303.1| flagellar hook-associated protein FlgL [Vibrio cholerae 623-39]
 gi|150423444|gb|EDN15388.1| flagellar hook-associated protein FlgL [Vibrio cholerae AM-19226]
 gi|227010202|gb|ACP06414.1| flagellar hook-associated protein FlgL [Vibrio cholerae M66-2]
 gi|227014086|gb|ACP10296.1| flagellar hook-associated protein FlgL [Vibrio cholerae O395]
 gi|229332579|gb|EEN98065.1| flagellar hook-associated protein FlgL [Vibrio cholerae 12129(1)]
 gi|229341064|gb|EEO06069.1| flagellar hook-associated protein FlgL [Vibrio cholerae TM
           11079-80]
 gi|229343897|gb|EEO08872.1| flagellar hook-associated protein FlgL [Vibrio cholerae RC9]
 gi|229349015|gb|EEO13972.1| flagellar hook-associated protein FlgL [Vibrio cholerae TMA 21]
 gi|229352037|gb|EEO16978.1| flagellar hook-associated protein FlgL [Vibrio cholerae B33]
 gi|229355238|gb|EEO20159.1| flagellar hook-associated protein FlgL [Vibrio cholerae BX 330286]
 gi|229369892|gb|ACQ60315.1| flagellar hook-associated protein FlgL [Vibrio cholerae MJ-1236]
 gi|254845024|gb|EET23438.1| flagellar hook-associated protein FlgL [Vibrio cholerae MO10]
 gi|255735513|gb|EET90913.1| flagellar hook-associated protein FlgL [Vibrio cholera CIRS 101]
 gi|262023849|gb|EEY42548.1| flagellar hook-associated protein FlgL [Vibrio cholerae RC27]
 gi|262028656|gb|EEY47310.1| flagellar hook-associated protein FlgL [Vibrio cholerae INDRE 91/1]
 gi|262032421|gb|EEY50983.1| flagellar hook-associated protein FlgL [Vibrio cholerae CT 5369-93]
 gi|297541125|gb|EFH77179.1| flagellar hook-associated protein 3 [Vibrio cholerae MAK 757]
          Length = 397

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 126/407 (30%), Gaps = 69/407 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q++  
Sbjct: 5   ISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLA----THYIQNVGQQEEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + L +  LV  RL   +  +S+ ++        ++ ++ G          A +L++  
Sbjct: 61  LRQYLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+  AN+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 NNFINLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGDDYQRKMKISNSLEIPFNNP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-----SMNAQQMTDFIKQLEDKFSDDEY 209
            S            +    +    +   LE +        A     F+   E K  +   
Sbjct: 181 GSKVFMEIPNPFGSYEPNYALQEGSELLLERAVNLNPDDTASYRVTFVDMPEGK--NGYQ 238

Query: 210 WANNWSNAS---------------DHNIKYRIKDTEGID----VSANVNMRGIRDIMFVA 250
              N S                  +  +K +I   + I+     + +V     RD +  A
Sbjct: 239 LERNGSVVQAGEFDAKTGIQFEELNIQVKGQISKGDAIELTPRTTFSVFDT-FRDAIRYA 297

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
                    +++D +      +++         + + R  +G     ++ +    ++   
Sbjct: 298 -------EGSVSDASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKI 350

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    S    ++   A  + +     +E S     K + L++ NY+
Sbjct: 351 SLAKSKSTFEDLDYAEAVIEFNENSRALEASQKAFGKTKDLTLFNYI 397


>gi|54294170|ref|YP_126585.1| flagellar hook-associated protein FlgL [Legionella pneumophila str.
           Lens]
 gi|53754002|emb|CAH15473.1| flagellar hook-associated protein FlgL [Legionella pneumophila str.
           Lens]
          Length = 411

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/409 (12%), Positives = 116/409 (28%), Gaps = 57/409 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ I++R         +   +L ++  +G               I   +Q  ++I   
Sbjct: 3   ISTNQIYQRGLDNLLTQQERLSRLQDQQASGIRVRTPSDDPVASAQIELIKQRISNIELL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
            ++       L   +  LS+    +  +    +               A   +      +
Sbjct: 63  QNNRQAADSALRLEEGILSNTVNSLHRLREIQIQSGNPSLSEEDRKTLAVEAQVLLNQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN----------------GYFTKDSLAKKSFDQMLQG 168
            +AN  D  G Y+FSG  S  +P++                      SL     D     
Sbjct: 123 DYANTKDSNGSYMFSGSKSLTQPVSLNLSGQYVYNGDNTQRFQAVTTSLLVAVNDTGDNV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK----- 223
           F+   S +        V+             + +     + +   ++  S  N+      
Sbjct: 183 FMRIPSGNGRFAIRETVTPNTGTASVSSGSVINEAAFVPDNYTMTFALNSQGNLVVMVIG 242

Query: 224 ----------------------YRIK-------------DTEGIDVSANVNMRGIRDIMF 248
                                   I                +   +S   N      +  
Sbjct: 243 TLSGNVIPPSGLPDDAPLYQEGSAISFNGMEMVVSGLPKAGDSFSISPAKNESIFSTVQR 302

Query: 249 VAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNK 308
           +     +    ++   A      ++L+ +   L  I+  ++ LG     +        + 
Sbjct: 303 MINNLNKPYVSSVEKAATQTENNQLLAQIDSALGHILSVQSDLGARLNQLETAEKANNDY 362

Query: 309 NNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +I    + K   ++      +L+  +  ++ + +  T++Q LS+ N+L
Sbjct: 363 LDISAATLKKLREIDPVAVATELNLQLVNLQAAQLSFTRIQGLSLFNFL 411


>gi|255018231|ref|ZP_05290357.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           F2-515]
          Length = 226

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 64/150 (42%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+     +      ++ +  K   ++ +G+  +   +       IL +    + +   
Sbjct: 4   ISTNQQASSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPGATAQILSYNHVLSQLNRE 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+T++  LSSM   +  +   ++  + G +D +    +A  ++   +  +
Sbjct: 64  KTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTSDKDNMSQSAEEIKGLLDVLI 123

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
           + AN  D+G+Y+FSG ++S KP     T  
Sbjct: 124 SVANSEDDGRYVFSGSSTSVKPFTTDKTTG 153


>gi|126668565|ref|ZP_01739519.1| Flagellin and related hook-associated protein [Marinobacter sp.
           ELB17]
 gi|126626970|gb|EAZ97613.1| Flagellin and related hook-associated protein [Marinobacter sp.
           ELB17]
          Length = 402

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 1/136 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS+  IF       ++L+    K  E++ TG+  +           IL+ +QE   I   
Sbjct: 4   ISSQQIFSGGINRLQDLSAQLNKTDEQIATGKRVNRPSDDPVAAARILKLDQEVKRIETY 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +  L   RL   ++ +SS   I+Q +    V    G    +     +  + +  +   
Sbjct: 64  ERNAQLANNRLGQEESAISSSLDILQRVRELTVQAGNGSLSASDRLSISSEMNERLQQLA 123

Query: 126 TFANMTD-EGQYLFSG 140
             AN  D  G+Y+FSG
Sbjct: 124 QTANTQDASGEYIFSG 139


>gi|15895479|ref|NP_348828.1| flagellin [Clostridium acetobutylicum ATCC 824]
 gi|15025208|gb|AAK80168.1|AE007721_8 Flagellin [Clostridium acetobutylicum ATCC 824]
 gi|325509626|gb|ADZ21262.1| Flagellin [Clostridium acetobutylicum EA 2018]
          Length = 425

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/422 (12%), Positives = 122/422 (28%), Gaps = 70/422 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   + +          ++   +  ++ +G+            T  ++   + +  ++ 
Sbjct: 3   ITNRMLTDTFLTDMNTNLQNMRDIQSQLTSGKKIRKPSDNPYVATKSMQLNTDISINSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     L+ +   L+    IVQ +   L+    G    ++       L      F 
Sbjct: 63  NTNINNTIYWLNQTDTALNQAGNIVQRIKELLISAGNGGYTQDQRDSIKAELNQRISEFS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPL---------------NGYFTKDSLAKKSFDQMLQGFL 170
              N +  GQYLF G   +EKPL               N        +  S    L    
Sbjct: 123 NVINSSFSGQYLFGGTRGNEKPLDIINSASGNKYLMYSNQSIDLPVASGASNVASLASGC 182

Query: 171 EENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNAS------------ 218
            +    L +G  +++   N   + + +  +  K +         S  S            
Sbjct: 183 GDLDIRLGSGSTVQLQINNGDSIQNILDGINSKIASSSSLKGKISAISYVKGNQTYIRVT 242

Query: 219 ----------------------------------DHNIKYRIKDTEGIDVSANVNM---- 240
                                               ++   I        S N       
Sbjct: 243 ALSDKDITITSGTNITALSSFKNQYIGVDKINQISKDLSVEISQGVLTQYSVNATEIMNY 302

Query: 241 -----RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE 295
                 GI     +  + ++ ++   ++   + L  K    V   L  I+  R+ +G S+
Sbjct: 303 KGVSASGIEKSYDLRQVFSDIVTDLSSNSGVSNLNTKDAEAVDALLENILAIRSTVGASQ 362

Query: 296 KNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
             ++  +   Q  N  +   +S +   +   +    + L      S   + K+ + ++++
Sbjct: 363 NRMDSAQKNNQENNYNMTLILSNTEDTDITESTMNYAALQTVYLASLQTSAKIIQPTLMD 422

Query: 356 YL 357
           Y+
Sbjct: 423 YM 424


>gi|284007168|emb|CBA72452.1| flagellar hook-associated protein FlgL [Arsenophonus nasoniae]
          Length = 313

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 102/359 (28%), Gaps = 49/359 (13%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M TT +S+  +  +               ++ + TG+         A     L+  Q + 
Sbjct: 1   MMTTRLSSQFMHYQKTNSMMYSQSQLADKYQRITTGKRLLQSADDPAAAAENLQINQTQT 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +A+   + +    ++ +    +  M+ + + +    V +      +           +S
Sbjct: 61  RLAQYKTARNFSQHQMQSQLQVVEKMEDLSRRIKQTFVAVSNQSIMSEDARQAYATELES 120

Query: 121 YES-FVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
            +S  V  AN  D  G YLF+G  +   PL          + S D + Q    +   ++ 
Sbjct: 121 LKSELVGLANSKDSSGSYLFAGYKTDTVPLVVGTNGVVNYQGSQDAIKQHIDADREVTVN 180

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
                 + +     +   +                   A +                   
Sbjct: 181 FTAQQVLQTATGGDIFQSLDL-----------------AINTLKTPYQSANPQAQSILAA 223

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           N                                   S +Q  +  +    + LG   K +
Sbjct: 224 N------------------------------IDSAHSDLQNTMKSLSTISSQLGSQLKEV 253

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +     ++ + ++    S+    +     A+       ++ SY +  +++ LS+ N L
Sbjct: 254 EQLNSRSEDVSLLLKERQSQLTNTDMAAEIAEYYQEEAILQASYSLFAQMKDLSLFNLL 312


>gi|308050017|ref|YP_003913583.1| flagellar hook-associated protein 3 [Ferrimonas balearica DSM 9799]
 gi|307632207|gb|ADN76509.1| flagellar hook-associated protein 3 [Ferrimonas balearica DSM 9799]
          Length = 304

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 120/346 (34%), Gaps = 53/346 (15%)

Query: 14  RMNILTKEL-NKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV 72
           R+N+ + ++   +  K+ ++M +G+  +            L  ++E+  + + + + S +
Sbjct: 10  RLNLNSMQMNQANYGKVLQQMSSGKKLNVPSDDPLGAVQSLSLQREQASLNQYMTNISSL 69

Query: 73  TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
              LS S++ L +M  ++  +    +    G   +      A  LR   +S V   N  D
Sbjct: 70  RMSLSRSESTLDNMNNVLYRVRDLSLQGGNGALTHEDRKGIAAELRVLQDSLVEHVNAKD 129

Query: 133 E-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
           E G+Y++SG      P+            S + + QG L +    +  G  +  +     
Sbjct: 130 EKGKYIYSGNEVDTPPV--------AQDASGNWVYQGDLSQRDVPVGEGNWIPGNDTAGA 181

Query: 192 QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAV 251
               F    ED F+    W +                                       
Sbjct: 182 ---IFFAGGEDIFNGLSEWID--------------------------------------- 199

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
              E  +    D A +    K + T+   ++ I +    LG  ++ ++      Q+    
Sbjct: 200 -VLEDPTLVPGDPAFDAAMDKAMRTIDNTMASIGQTMTELGGRQQGMDLLETAHQDIGMF 258

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               I +   ++   A   L+T +  ++ +     K+ +LS+ N+L
Sbjct: 259 NQELIGEIENLDYGEASLSLATYLMALQATQQSYVKINQLSLFNHL 304


>gi|27380963|ref|NP_772492.1| hypothetical protein bll5852 [Bradyrhizobium japonicum USDA 110]
 gi|27354129|dbj|BAC51117.1| bll5852 [Bradyrhizobium japonicum USDA 110]
          Length = 627

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 91/277 (32%), Gaps = 17/277 (6%)

Query: 89  IVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG---INSSE 145
               +      L    +      +N G    +  S +     T +   +  G   IN+ +
Sbjct: 360 AGDTITVNGTTLTFVSSGATGNQLNVGDSIQTLMSKIDQITGTSKPSTIHGGSITINTDD 419

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
                  + ++ A  S                +          +A  + +        + 
Sbjct: 420 AATLNITSSNTGALGSLGFSTTPVTATQPPLRVGSSPAS----SATTLVNGSATTVKWYL 475

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN---LT 262
            ++   +  S A       R+ D+  +   A  +   IR  +    +   F +      +
Sbjct: 476 GNDGPGSPRSTA-----MARVDDSVTVQYGAQADEDAIRRQLQAIAVFGTFSTSPTGQYS 530

Query: 263 DGARNVLTKKMLSTVQQ--GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
            G  + L+ ++   + Q  G   I + +  + +++  + +           + T I ++ 
Sbjct: 531 GGQVSALSLRVTQALTQQPGQQRIEDIQTDIAMAQNTMKDASTRQTQAKAQLQTIIDQAE 590

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                   +++  L N ++ SY +T+KL +LS++ +L
Sbjct: 591 SAPPDQVASEILALQNALQASYQVTSKLAQLSLVKFL 627



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 59/170 (34%), Gaps = 3/170 (1%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
             + +N+    L  ++ TG+ S     +G      +    + ++IA    + + V   ++
Sbjct: 16  QIRNINQQLTDLSTQLSTGKLSQNYSGMGTNEGFAIAGRAQLSNIAAYTDTITNVNVSIN 75

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
            +   L S+ KI   +        +    N +  +        + S V   N     +YL
Sbjct: 76  LANTALQSLTKIRNTVQTGSANTAQDLNVNGQ-TVAQNTAAAQFGSMVGVLNTQTGNRYL 134

Query: 138 FSGINSSEKPLNGYFT--KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
           FSG   + + +         +  +  F  ++      +  +   G+ ++ 
Sbjct: 135 FSGTAVNTQSVADAGDIINGTTTQAGFKAVMAERQAADLGATGMGRLVQT 184


>gi|289523317|ref|ZP_06440171.1| flagellar hook-associated protein 3 [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503009|gb|EFD24173.1| flagellar hook-associated protein 3 [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 882

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 26  SVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
            +KL  +M TG+     SD  L +G  ++      + + ++             LS + A
Sbjct: 17  MLKLQRQMSTGKLHQKPSDDPLAVGRELSISTTIFENEQYLKNLDD----AMMWLSNTDA 72

Query: 82  HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141
            L+ +  ++  +    +    G  +  ++   A  +    E  +  AN + EG+YLFSG+
Sbjct: 73  ALNQITDVMHRIRELAIYAGNGTFEEAEYNAIADEIYQLQEELINTANFSVEGRYLFSGL 132

Query: 142 NSSEKPL 148
           N+++KP 
Sbjct: 133 NATQKPF 139



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIE 286
             T  +  SAN+N      ++       + L + L  G    ++  +L  +   +  ++ 
Sbjct: 758 NQTITVRTSANINSTDFFGLL-------DDLVQALRQGDVEGISGNILPKIDDAIDDVLR 810

Query: 287 QRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITT 346
            R   G  +K        L+  N   +   SK    +   A  + +   +  + S     
Sbjct: 811 VRTQSGALQKRYETSSSRLKQMNLNYNELYSKVSDTDLAEAATKFAMAQSVYQASLATIA 870

Query: 347 KLQKLSILNYL 357
           ++ + +++++L
Sbjct: 871 RIIQPTLVDFL 881


>gi|323495370|ref|ZP_08100447.1| flagellar hook-associated protein FlgL [Vibrio brasiliensis LMG
           20546]
 gi|323310293|gb|EGA63480.1| flagellar hook-associated protein FlgL [Vibrio brasiliensis LMG
           20546]
          Length = 397

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 121/397 (30%), Gaps = 49/397 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q+K  
Sbjct: 5   ISSFHNYQSVQNDLRRSEAKVHHNQAQLASGKKLMKASDDPLA----THYIQNIGQQKEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + +   + +L   RL   +  +S+ ++   +    ++ ++ G             + +  
Sbjct: 61  LRQFTDAITLTRNRLEHHEVIISNAEEFADEAKRTVMEMINGALSPEDRLAKRREIEEIS 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+   N+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 NNFLNLVNVQDESGNYIFAGTKPKNQPFFRDRNGDVVYAGDDYQRKMKISNSLEMPINDP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-SMNAQQMT----DFIKQLEDKFS---- 205
            S      D     F  + +    +   LE + +++    +     F+   E K+     
Sbjct: 181 GSKLFMEIDNPFGDFEPKYNLKDASELLLERAINIDPDDQSSYKVTFVDMPEGKYGYQLE 240

Query: 206 --DDEYWANNWSNASDHNIKY-RIKDTEGIDVSANVNMRGIRDIMFVAVI--GTEFLSKN 260
                  A+ +  A     +  RI+    I     + +   R            E    +
Sbjct: 241 RDGSVVKADTFDPAEGIQYEGVRIQVKGQITKGDEIELEPRRTFSVFETFQDAMELSRGS 300

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
           ++D +      ++          + + R  +G     ++ +     +    +    S   
Sbjct: 301 VSDSSNTAQLHQITQEFHAAFIHLNKARTDVGARLNTLDIQEEQHDDFKMTLAKSKSNFE 360

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++   A  + +     ++ S     K + L++ NY+
Sbjct: 361 DLDYAEAIIEFNENSRALQASQQAFGKTKDLTLFNYI 397


>gi|183179572|ref|ZP_02957783.1| flagellar hook-associated protein FlgL [Vibrio cholerae MZO-3]
 gi|183012983|gb|EDT88283.1| flagellar hook-associated protein FlgL [Vibrio cholerae MZO-3]
          Length = 397

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/407 (13%), Positives = 126/407 (30%), Gaps = 69/407 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q++  
Sbjct: 5   ISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLA----THYIQNVGQQEEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + L +  LV  RL   +  +++ ++        ++ ++ G          A +L++  
Sbjct: 61  LRQYLDAIVLVRNRLEHQEVIIANTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+  AN+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 NNFINLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGDDYQRKMKISNSLEIPFNNP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-----SMNAQQMTDFIKQLEDKFSDDEY 209
            S            +    +    +   LE +        A     F+   E K  +   
Sbjct: 181 GSKVFMEIPNPFGSYEPNYALQEGSELLLERAVNLNPDDTASYRVTFVDMPEGK--NGYQ 238

Query: 210 WANNWSNAS---------------DHNIKYRIKDTEGID----VSANVNMRGIRDIMFVA 250
              N S                  +  +K +I   + I+     + +V     RD +  A
Sbjct: 239 LERNGSVVQAGEFDAKTGIQFEELNIQVKGQISKGDAIELTPRTTFSVFDT-FRDAIRYA 297

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
                    +++D +      +++         + + R  +G     ++ +    ++   
Sbjct: 298 -------EGSVSDASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKI 350

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +    S    ++   A  + +     +E S     K + L++ NY+
Sbjct: 351 SLAKSKSTFEDLDYAEAVIEFNENSRALEASQKAFGKTKDLTLFNYI 397


>gi|320353946|ref|YP_004195285.1| flagellar hook-associated protein 3 [Desulfobulbus propionicus DSM
           2032]
 gi|320122448|gb|ADW17994.1| flagellar hook-associated protein 3 [Desulfobulbus propionicus DSM
           2032]
          Length = 292

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 100/311 (32%), Gaps = 63/311 (20%)

Query: 47  ARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTD 106
           + V SIL    +       + +   V   L+ ++  + S++ ++       V        
Sbjct: 45  SSVGSILGCRSDIVKGERYVENCKHVQDSLANAEISIDSIEGLMTRAKEIAVAGANDSLS 104

Query: 107 NNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQML 166
                  A  +   Y+  +  AN    G+Y+F+G N             S +  +++   
Sbjct: 105 TADKATLADEISQLYQELLDLANTQISGKYIFAGYN-------DQTVPFSGSPVTYNG-- 155

Query: 167 QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI 226
                +     ++       ++    +  F+  +                    N+   +
Sbjct: 156 ---TGDQQMIEISPGTTVAKNITGDDL--FMSPI--------------------NLFTTL 190

Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIE 286
           +D +    S +                                   ML+ ++     +  
Sbjct: 191 EDLQTALTSGSSAD-----------------------------VSAMLTPLEAAAEQVRA 221

Query: 287 QRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITT 346
           Q++ LG +   +++     +N   ++ T +S+    +     A+++ +   +E +  +T 
Sbjct: 222 QQSALGNTSARMDDMISMHENALLLLKTTLSRHQDADLTEVLAEIAKMETSLEATMQVTA 281

Query: 347 KLQKLSILNYL 357
           ++  LS+++YL
Sbjct: 282 RVSSLSLMDYL 292


>gi|239628959|ref|ZP_04671990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519105|gb|EEQ58971.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 327

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/352 (10%), Positives = 109/352 (30%), Gaps = 28/352 (7%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ S +    N   +    +    + ++ + +  ++  +  A  +       +     E 
Sbjct: 3   ITESMMTTSYNKNLQRNISNLASSNLKLASQRQYNHVSEDPATASKAFAIRDQIARTEEH 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           ++     T  L T+ +++ ++  I++++         G +  +     A  L    E  +
Sbjct: 63  INVVKNATGELETADSNILTLNSILENIYEKATKA-GGASSQDSMDAIAEELSGQMEELL 121

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N     ++LFSG  +   P                         ++   L      V
Sbjct: 122 QTMNARYGDKFLFSGSANGTAPFT----------------------LDADGNLLFNGKSV 159

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
            + +      +  + +  + D   +    +  +      +I  +    +    +  G+ +
Sbjct: 160 DAYDKNDPDTYFSENKPVYLD-IGFGTYATGTNTAKTGIKISTSGVDVLGCGKDENGMPN 218

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
              +  +  +   +         +    LS +++  S I    + +G  EK +   +  L
Sbjct: 219 --NLYSLIGQVRDQLKAGDKEGAM--DSLSQLKKKQSNISIATSEIGTREKMLERTQDRL 274

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +     +         V+  T      +      ++  + + +   SI +++
Sbjct: 275 ETSLVNLQKSQKDLEAVKVETEAVNNKSAETAWMITLQLGSSIIPPSIFDFM 326


>gi|226939367|ref|YP_002794440.1| FlgL [Laribacter hongkongensis HLHK9]
 gi|226714293|gb|ACO73431.1| FlgL [Laribacter hongkongensis HLHK9]
          Length = 311

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 113/353 (32%), Gaps = 45/353 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+S F + +           +L+ ++ T +  +           IL+  Q     ++ 
Sbjct: 3   ISTNSTFLQGSYGVSIQQSLMSQLNVQLSTLKRVNTPSDDPVAAARILDISQSDARNSQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           +++       L  S+  L  +  I+  M    V    G   +      + + + S E  V
Sbjct: 63  INNTKAAESALEFSETSLDRISNIIIQMKEMSVQAGNGAASDENLKQMSKVFKASLEEMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+FSG +S       Y    +    +                  G   +
Sbjct: 123 AVANSTDASGKYVFSGTSSDTPA---YTMTGNWPVVTI--------------TYGGNDGQ 165

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            S   +   +  I +       +        +A   ++                      
Sbjct: 166 KSLAISDTRSIAISEPGSSIFGEG-------SADAGSL--------------------FE 198

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
            +  +A +     +     G+       +   ++ GL  ++  +A +G            
Sbjct: 199 TMSRMAALLENGRTGTYPAGSYEQELTAIQGGLESGLQSVLTGQASVGSRRLEAQNAGNL 258

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++ + +     S    ++   A + L+     ++ S +  +K+Q +S+ NY+
Sbjct: 259 GEDLSLVYAKTRSNLEDLDVPKAASDLAMAQMALQASQLSFSKVQGMSLFNYI 311


>gi|134300274|ref|YP_001113770.1| flagellar hook-associated protein 3 [Desulfotomaculum reducens
           MI-1]
 gi|134052974|gb|ABO50945.1| flagellar hook-associated protein 3 [Desulfotomaculum reducens
           MI-1]
          Length = 438

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 2/152 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS +   +    +   + + K  E+  TG++ +      ++++ ++          + 
Sbjct: 4   VSTSLLGNNLRNYIQNNLQRAAKYQEQSSTGKTINRPSDSPSQISYLMSVNATLISNEQY 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L+ S + L +M K++QD          G          A  +    ++ V
Sbjct: 64  SRNIKDGLAYLNQSDSALDTMGKLLQDAKVEANKGANGTLTPEDRNAIAEQIDRQIDAMV 123

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSL 157
             AN    G+YLF+G  + + P   Y   DS 
Sbjct: 124 DMANSALGGKYLFAGRKNGQPPF--YRDPDSG 153


>gi|302391043|ref|YP_003826863.1| flagellar hook-associated protein 3 [Acetohalobium arabaticum DSM
           5501]
 gi|302203120|gb|ADL11798.1| flagellar hook-associated protein 3 [Acetohalobium arabaticum DSM
           5501]
          Length = 288

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/352 (11%), Positives = 108/352 (30%), Gaps = 67/352 (19%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++   +   +     +  +   + + ++ TG+  D   Q        ++ E   +   + 
Sbjct: 3   VTNGMMVNNLLGNLSDSKERLDEYNRQLSTGKKFDMPSQNPTGTVRSMDLESTISSNKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     + +++  LS    I+       V    G  +       A  +++   +  
Sbjct: 63  TRNINQSLTWIKSTEGTLSHANDILHRTRELAVKGANGSLNETDRQSIADEVKELKANMK 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             AN +  G+Y+F+G   + KP +      + +K   D              +  +  + 
Sbjct: 123 GVANTSYNGKYIFAGHKVNIKPYSD-----NSSKYQGDD-----------GKIIREISQG 166

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           + +   Q  DF + + D+                  ++  I + E  ++    N      
Sbjct: 167 TEVKINQSGDFFEPILDR------------------MEKLIDNLETGNIDGISNN----- 203

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
                         +L +    V+ K+                  +G  +  +   +  L
Sbjct: 204 ------------ISDLDESLDEVIKKRS----------------EVGAKQNRLELTKNRL 235

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++        +S++  V+       L    N    +     ++ + S+ ++L
Sbjct: 236 EDDKIKFKELLSQNEDVDIAKTIMNLKMSENVHRAALSSGARIIQPSLTDFL 287


>gi|326796590|ref|YP_004314410.1| flagellar hook-associated protein 3 [Marinomonas mediterranea
           MMB-1]
 gi|326547354|gb|ADZ92574.1| flagellar hook-associated protein 3 [Marinomonas mediterranea
           MMB-1]
          Length = 404

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 100/360 (27%), Gaps = 50/360 (13%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
               +L ++ E     +   + +L    L   +  L S+   +      L+       D+
Sbjct: 45  GAGQVLNYQAENARNDQYEKTMTLAKNALDYEEVSLDSLNTSMDRANRLLIQAQNSANDD 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPL---------------NGY 151
                 A  L    +S     N  D  G Y+FSG +S+   +                 Y
Sbjct: 105 VDLESIAEELSLIVDSMADLMNSKDANGNYIFSGSDSASPTMSKNGAGEYVYGGNETQNY 164

Query: 152 FTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTD-------FIKQLEDKF 204
                      +   +   ++          +         + D       F+    D  
Sbjct: 165 AQIADGVSIPVNDTGKKVFQDVWTRNTFTATVTAGGATLTSLVDDQDAYDKFVDDNYDAI 224

Query: 205 SDDEYWANNWSNASDHNIKYRIK-DTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTD 263
           +         + A   N       +   +D     +   I  +     + +   + ++T 
Sbjct: 225 TPANNTYTLSTTAGAPNSYSFTDVNGNVVDSGTYEDGNAINVMGMSFTMDSAGSTVSVTL 284

Query: 264 GA-------------------RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                 N  + +  + ++   + I   +  +G +   +      
Sbjct: 285 DTPTRDNVLNELNNTISVLKDSNATSAERTAALRDATTSIKNTQETVGTALSEVGSRINT 344

Query: 305 LQNKNNIIDTY-------ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  +   I +        +++  G++   A  +L +    +  +  + T+L  LS+ N L
Sbjct: 345 ISAREGYISSKETSNTLAMNEIAGIDLSEAATELQSANTAVSATQSLFTRLASLSLFNSL 404


>gi|126652478|ref|ZP_01724650.1| flagellar hook-associated protein L [Bacillus sp. B14905]
 gi|126590749|gb|EAZ84864.1| flagellar hook-associated protein L [Bacillus sp. B14905]
          Length = 315

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/309 (8%), Positives = 92/309 (29%), Gaps = 55/309 (17%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
               + + ++   + +   +       L ++   L+ + + ++ +   ++        + 
Sbjct: 61  AVKGMGYRRDLAKVEQYTRNMITAGSWLDSTDESLNQVGEQMKRVRELVIQAATDSNTSE 120

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQG 168
                   +    +      N    G Y+FSG  ++E    G     +  ++S    +  
Sbjct: 121 DRDKIKKEIDQIRQQLQDVGNTNIGGSYIFSGTRTNEPLFIGGAINPNTNQESVKVEIYD 180

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
            ++ +  +        +  M  + ++D +                             K 
Sbjct: 181 GIQLSVNTPGKDLFNNIDDMMGK-ISDLLGDP-------------------------TKT 214

Query: 229 TEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
            E I                 A +     S    D             +    + ++E +
Sbjct: 215 GEEI-----------------ASMLGGVSSSTTNDD------------ITAMHNKVLEAQ 245

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           A +G  +  +      L  +   +   +  +  V+   A  ++ T  +  + +  + +K+
Sbjct: 246 ADIGARQNRVEMMENRLGVREVNVTKQLRDNESVDYAKAITEMVTHESIHQAALSVGSKI 305

Query: 349 QKLSILNYL 357
            + ++++++
Sbjct: 306 IQQTLVDFI 314


>gi|22126382|ref|NP_669805.1| flagellar hook-associated protein FlgL [Yersinia pestis KIM 10]
 gi|45441402|ref|NP_992941.1| flagellar hook-associated protein FlgL [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807180|ref|YP_651096.1| flagellar hook-associated protein FlgL [Yersinia pestis Antiqua]
 gi|108812476|ref|YP_648243.1| flagellar hook-associated protein FlgL [Yersinia pestis Nepal516]
 gi|145598603|ref|YP_001162679.1| flagellar hook-associated protein FlgL [Yersinia pestis Pestoides
           F]
 gi|161760582|ref|YP_070209.2| flagellar hook-associated protein FlgL [Yersinia pseudotuberculosis
           IP 32953]
 gi|218928929|ref|YP_002346804.1| flagellar hook-associated protein FlgL [Yersinia pestis CO92]
 gi|21959368|gb|AAM86056.1|AE013853_4 flagellar biosynthesis protein, hook-filament junction protein
           [Yersinia pestis KIM 10]
 gi|45436262|gb|AAS61818.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776124|gb|ABG18643.1| flagellar hook-associated protein 3 [Yersinia pestis Nepal516]
 gi|108779093|gb|ABG13151.1| flagellar hook-associated protein 3 [Yersinia pestis Antiqua]
 gi|145210299|gb|ABP39706.1| flagellar hook-associated protein 3 [Yersinia pestis Pestoides F]
          Length = 337

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 109/351 (31%), Gaps = 35/351 (9%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++            ++  +++ TG+            +  +   Q ++  ++ 
Sbjct: 14  LSTSMLYQQNMQGITNAQSLWMQTGQQLSTGKRVVNPSDDPMAASQAVMVSQAESENSQY 73

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S   +  S     L+     +Q +   ++        ++     A  L+   +  +
Sbjct: 74  TLARSFARQSSSLETTVLAQTTSTIQSIQSLVISAKNDTLSDDDRASYATQLQGLKDQLL 133

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSK--SLLAGQH 182
             AN TD  G+Y+F+G  S + P               D     ++  +      +    
Sbjct: 134 NQANTTDGNGRYIFAGFKSDKPPF-----------AVSDTGEVTYVGGDVAIEQKVDTNR 182

Query: 183 LEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242
              +      +   +        DD              +       + ID   N     
Sbjct: 183 SMTAGHTGASVFMALTGNAKPEPDDVN---------GAPVAAEKNIFDTIDTVLNSLKTP 233

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
           ++             + +           K L  +   L+ ++  +A +G+  + ++   
Sbjct: 234 LQ------------GASDEVKAQAQADLDKGLRGLSNSLNNVLSVQAEIGVQLQELDNLD 281

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
               ++  I    +S    V+  +A +        ++ SY   T +Q LS+
Sbjct: 282 SLGGDRTLINKQQLSDLQDVDWTSAISSYVMQQAALQASYTTFTNMQGLSL 332


>gi|51597630|ref|YP_071821.1| flagellar hook-associated protein FlgL [Yersinia pseudotuberculosis
           IP 32953]
 gi|186896764|ref|YP_001873876.1| flagellar hook-associated protein FlgL [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590912|emb|CAH22568.1| putative flagellar hook-associated protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699790|gb|ACC90419.1| flagellar hook-associated protein 3 [Yersinia pseudotuberculosis
           PB1/+]
          Length = 307

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST ++   MN    + N    K++++M+T Q      +     T +L+  +E+ +I + 
Sbjct: 3   ISTPTMSSTMNRFITQHNGKLEKINKQMMTQQRITLPSEDPIASTRLLQINREQVNIKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S ++  L+    H+S++ K +  +   L+ + +    N      A  L    ES V
Sbjct: 63  SSNISGLSNSLANQTGHVSAINKQLVSIKSSLLSINDSVKSNKDISGVADELNYMLESVV 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKD 155
              N    EG+YLF+G  S+++P+    T D
Sbjct: 123 AGLNAKNSEGRYLFAGTASNKQPITFDKTAD 153


>gi|172058467|ref|YP_001814927.1| flagellar hook-associated protein 3 [Exiguobacterium sibiricum
           255-15]
 gi|171990988|gb|ACB61910.1| flagellar hook-associated protein 3 [Exiguobacterium sibiricum
           255-15]
          Length = 320

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/361 (11%), Positives = 108/361 (29%), Gaps = 56/361 (15%)

Query: 8   TSSIFERMNILTKELN-KDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           T ++  + NI     + +    + E++++G+      +        + +  E   + +  
Sbjct: 4   TQTMLTKTNIGYLSASYQKLSSMQEQLISGKKIQRPSEDPVVAMQGIRYRTEVREVEQFK 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T  +  + + L+ +   +  +            D  +       +    E   T
Sbjct: 64  KNVNEATGWMDLTDSALNEVTSAMSRVRELTTQAATDTYDATQRKAIQSEVGQLIEHIGT 123

Query: 127 FANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS 186
            AN     + +F+G  + +                                         
Sbjct: 124 MANTKYNEKGIFNGTATDKP---------------------------------------- 143

Query: 187 SMNAQQMTDFIKQ---LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM--- 240
            ++ + + D++       D    D   A   S      I+Y I     + V+ +      
Sbjct: 144 FVSIEGLRDYLTSSGKPVDSVFTDGDPATKGS----EIIQYEISSGIQVQVNVSPTDVFS 199

Query: 241 ----RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEK 296
                 ++ +       +E                 ML  +   ++  +E RA LG    
Sbjct: 200 PETFTTLKKLYDALGGVSETGGTA-DSSNNGAQLSAMLKDLDVMVNQTVETRADLGARVN 258

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
            +      L+++  I+ T +S +  +E      +L +       +     ++ + ++L++
Sbjct: 259 RLELNASRLEDQEIIVKTVMSDNEDIEAEKVIMELKSYETLHRAALSAGARIIQPTLLDF 318

Query: 357 L 357
           L
Sbjct: 319 L 319


>gi|117923398|ref|YP_864015.1| flagellin-like protein [Magnetococcus sp. MC-1]
 gi|117607154|gb|ABK42609.1| Flagellin and related hook-associated proteins-like protein
           [Magnetococcus sp. MC-1]
          Length = 401

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/403 (13%), Positives = 125/403 (31%), Gaps = 57/403 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ S+++       ++  +   ++ E+  +GQ  +            + +  + + +   
Sbjct: 4   VTQSTLYSTTVTQLQDQYRTMSQIQEKSTSGQEVNRPSDDPTIAYRDMLFSTQLSEVDAL 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQK---IVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
           + +  L ++R+  ++ +LS+M+      Q +V  L   ++     + F   A   +  YE
Sbjct: 64  VRTTDLASERMRMAETNLSTMEGKMLDAQQLVLTLGTAVQ-SGQPSVFNAAAREAQAIYE 122

Query: 123 SFVTFANMTDEGQYLFSGINSS----------------------EKPLNGYFTKDSLAKK 160
             ++  N   +G  LFSG  ++                       K   GY    +    
Sbjct: 123 DLLSSVNAELDGVPLFSGGKTTLPYSESNLTTSAVKIREGGQGQVKATTGYSAALTGTPT 182

Query: 161 -----------SFDQMLQGFLEENSKSLLAGQHLEVSSMNA-----------QQMTDFIK 198
                      S D           +  + G                     Q   D   
Sbjct: 183 DIPASVRVIYRSTDDAGTALATPQYQVNVNGVEGSTIDSTGFPQTLDLGDGMQLQVDSAP 242

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM----RGIRDIMFVAVIGT 254
             +D    +   A     A       RI   + ++ +          G      V     
Sbjct: 243 GDKDALFFEVVPAYQGGAADREV---RIATGQRLEGNVTGEEVMQGTGNGRGADVFAAVA 299

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
                 L +          L+ VQ G + I +  AV G+    +      L+  ++ + T
Sbjct: 300 GLRGALLRNDYEE--INAWLTPVQDGRAQIQDLEAVTGVRTVLMESVNDSLELDSDALKT 357

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             + +I V+    ++QL      ++M      ++   S+L+++
Sbjct: 358 VKAVNISVDAFDIYSQLQQTSQAMQMMTASERQILDNSLLDFI 400


>gi|315638380|ref|ZP_07893558.1| flagellin B family protein [Campylobacter upsaliensis JV21]
 gi|315481508|gb|EFU72134.1| flagellin B family protein [Campylobacter upsaliensis JV21]
          Length = 750

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+SI   M+  +        KL  ++ +G       +  +        E E   + +   
Sbjct: 10  TNSIQNTMSGASA-----LNKLSMQLSSGMKIQDSYEDASIYIDNTRLEYELKTLEQIKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           + S   +  S S   L  M K++++    +                A  L    E  V  
Sbjct: 65  ATSSAKEMTSNSMKALQDMVKLLENFKVKVTQAASDSNSQTSREAIAKELEKIKEQIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSINGQYLFAGAQLNHKPFDS 147



 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 10/118 (8%)

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D+M  AV+     +    D  RN   +  L  +      I +    +G    NI+     
Sbjct: 638 DLMIEAVLSGNMRANADADNPRNTGMQGALERLDHLSDHINKLNTTMGAYHNNIDNVNTR 697

Query: 305 ---LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI--EMSYMITTKLQKLSILNYL 357
              L      + T ++     +       ++ +  ++  + S   TT + +LS+LNY+
Sbjct: 698 VTFLGVNVQTLKTKVND---ADYGE--TLMNLMQTQLAYQASMKATTTISQLSLLNYM 750


>gi|238794004|ref|ZP_04637622.1| Flagellar hook-associated protein 3 [Yersinia intermedia ATCC
           29909]
 gi|238726636|gb|EEQ18172.1| Flagellar hook-associated protein 3 [Yersinia intermedia ATCC
           29909]
          Length = 344

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 112/349 (32%), Gaps = 31/349 (8%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++            ++  +++ +G+            +  +   Q ++  ++ 
Sbjct: 21  LSTSMLYQQNMQGVTNAQSLWMQSGQQLSSGKRVVNPSDDPMAASQAVMVSQAQSENSQY 80

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S   +  S     L+     +Q +   ++        ++     A  L+   +  V
Sbjct: 81  TLARSFARQSSSLETTVLAQATSTIQSIQTLVISAKSDILSDDDRASYATQLQGLKDQLV 140

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F+G  S + P             + D   QG      + + A + + 
Sbjct: 141 NQANTTDGNGRYIFAGFKSDKPPF--------AVSATGDVTYQGGNVAIEQKVDANRSIT 192

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V    +          + +  D          A    +         ID           
Sbjct: 193 VGHTGSSVFMALTSNAKPEPDD----------AGGKPVASESNIFNTIDT---------- 232

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
             +  ++      + +           K +  +   L+ ++  +A +G   + ++     
Sbjct: 233 --VLKSLKVPLQGATDAVKDQATADMDKGIRGLSNSLNNVLSVQAEIGTQLQELDNLDSL 290

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             +++ I    +S    V+   A +        ++ SY   T +Q LS+
Sbjct: 291 GSDRSLINKQRLSDLQDVDWTAAISSYVMQQAALQASYTTFTDMQGLSL 339


>gi|332162894|ref|YP_004299471.1| hypothetical protein YE105_C3274 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667124|gb|ADZ43768.1| hypothetical protein YE105_C3274 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 305

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/354 (11%), Positives = 120/354 (33%), Gaps = 53/354 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ +S+   M         +  KL+E++ +G+  +           +++ E  K+ + + 
Sbjct: 3   VTNTSMSRIMMDSMANRTVEYAKLNEQLTSGKRVNKISDDPVASMQLVQLENSKSDVNQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   ++   S  +A L S++  +  +   L+    G     +       +    +  +
Sbjct: 63  KTNVVRLSGNYSVQEASLKSLEGQLLVVRDKLLAAKNGNHSATESATFGREINLLLDGMM 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           +  N    EG YLF+G  ++ +P+          K +     +G       +      + 
Sbjct: 123 SDLNTKNSEGNYLFAGTKTNIEPVE-------YNKTTQTYTFKG-------NNERRDAVV 168

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            + +  Q+ TD                                    +  S + +   + 
Sbjct: 169 GNGITLQENTD------------------------------------LSSSLSASGNNLE 192

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
            +  +  +  + +  ++   A N      L+ ++ G   I      LG  +  +      
Sbjct: 193 ILTNLKKLANKMIDSSIKPAAYNQEISDNLAAIEIGAKKIGGMLTDLGAKQNRLEH-LSN 251

Query: 305 LQNKNNIIDTYIS-KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           L +   I++  +      ++    ++ + +     ++++ +  K+ +LS+ NY+
Sbjct: 252 LHDDVEIVNANLEKDLAEIDILQVNSAMQSNFLSTKIAHSMQAKISQLSLFNYI 305


>gi|266621928|ref|ZP_06114863.1| putative FgL, flagellar protein [Clostridium hathewayi DSM 13479]
 gi|288866401|gb|EFC98699.1| putative FgL, flagellar protein [Clostridium hathewayi DSM 13479]
          Length = 327

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/354 (11%), Positives = 116/354 (32%), Gaps = 32/354 (9%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +    N   +    +    + ++ + +  ++  +  A          +     E 
Sbjct: 3   ITENMMTAMYNRNLQRNVANLASSNLKLTSQRQYNHVSEDPAAAAKAFTVRDQIARSEEH 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           +++       L T+ ++++++  I++ +         G +  +     A  L    E  +
Sbjct: 63  INTVKNAVGELDTADSNIATINSILETVFEKATRA-GGASSQDNLDAIAEELGGLKEEIL 121

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N     ++LFSG  + E P                         +++  L      V
Sbjct: 122 QTMNARYGDKFLFSGSANGEAPFT----------------------LDAEGNLLFNGKAV 159

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
            +           + +  + D   +    S  +      RI  +    +    + +GI +
Sbjct: 160 DAYKPDDPATHFNENKPVYLD-IGFGTYASGTNTEGTGIRISTSGVDVLGYGTDDQGIPN 218

Query: 246 IMFVAV--IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            ++  +  I ++    +   GA + L++     +++  S I    + +G  EK ++  + 
Sbjct: 219 NIYSLIGKIESQLKDGD-KSGAMDTLSQ-----LKKKQSNISIATSEIGTREKLLDRTKD 272

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            L++    +         V   T      +      ++  + + +   SI +++
Sbjct: 273 RLESGLVNLKETQKNLEAVSVETEAVNNKSYETAWMVTLQLGSSIIPPSIFDFM 326


>gi|182412214|ref|YP_001817280.1| flagellar hook-associated protein 3 [Opitutus terrae PB90-1]
 gi|177839428|gb|ACB73680.1| flagellar hook-associated protein 3 [Opitutus terrae PB90-1]
          Length = 294

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 117/354 (33%), Gaps = 65/354 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I++++  E M    ++L+ +  KL +++ +G+         A V  +L  + E+  +A+ 
Sbjct: 3   IASNTASEVMLRQIQQLSANQSKLQQQVGSGRRITNPEDDPAAVGRVLTLQSEQRRLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQ--DMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             +     + L+ SQ   S ++ + Q  D    L  L  G   +++    A  +    E 
Sbjct: 63  EAN---ANRALTLSQTAYSGLKGLKQISDRANELATLGTGAMSSDQMNAYAIEVSQMVEQ 119

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
            +  AN                   N Y    +       ++              G  +
Sbjct: 120 ALQHANSQSG---------------NDYVFAGTDVSNKPFEINTTTGLVEYGGNSDGAPI 164

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           ++S                                          T     S + N   I
Sbjct: 165 QLSEAT---------------------------------------TVVATTSGSTNED-I 184

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            D++   +   + L+    D  R          +Q G + +I   A +G  +  I   + 
Sbjct: 185 ADMLNALISLRDALASGDPDQVRAT-----QPALQVGENTVIGAMADVGGIQTRIEAAKS 239

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              +    +++ +S    ++  TA  +L+ L    E +   TTK+  LS+L+Y+
Sbjct: 240 QQADGATNLESRVSDESSLDLPTAIVKLTQLQTAYEAALASTTKVMNLSLLDYI 293


>gi|297583334|ref|YP_003699114.1| flagellar hook-associated protein 3 [Bacillus selenitireducens
           MLS10]
 gi|297141791|gb|ADH98548.1| flagellar hook-associated protein 3 [Bacillus selenitireducens
           MLS10]
          Length = 436

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 58/174 (33%), Gaps = 7/174 (4%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T   +      +  L +        L +++ TG+      Q      + + +  +  
Sbjct: 1   MRVT--QSMMASSSLRHLHQSYQS-LTNLQDQLATGKKITRASQDPVIAMNGMRYRTQVA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
              +   + S V   + TS A L    + +  +    V       D+ +    A  +   
Sbjct: 58  ETDQFKRNLSEVYNWMDTSDATLDQGTQALHRVRELTVQASNDSYDSGQRANIAKEVDQL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFL 170
            E  ++ +N  +  +Y+F+G N++  P++     Y           D      +
Sbjct: 118 LEQLLSISNTKNNNKYIFNGTNTTNAPVDQSRMDYGVTQIAEGADIDAADVDLI 171


>gi|304310892|ref|YP_003810490.1| Flagellin [gamma proteobacterium HdN1]
 gi|301796625|emb|CBL44837.1| Flagellin [gamma proteobacterium HdN1]
          Length = 412

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
             +  L   Q+ N   +   ++      L + +A L+S+  I+  +   LV    G  + 
Sbjct: 45  GTSIALNLRQQVNAAEQYAKNSGSAASMLKSEEASLTSVNDILGRIRDLLVTAGNGILNY 104

Query: 108 NKFPINAGMLRDSYESFVTFANM-TDEGQYLFSGINSSEKPLN 149
                 A  ++   +  V+ AN  + +G+Y+FSG  ++  P+ 
Sbjct: 105 EDRKTIATEMQGRLDELVSVANTQSADGKYIFSGARTNTMPIT 147


>gi|255021362|ref|ZP_05293410.1| Flagellar hook-associated protein flgL [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969225|gb|EET26739.1| Flagellar hook-associated protein flgL [Acidithiobacillus caldus
           ATCC 51756]
          Length = 433

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 1/145 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST   ++               L +++ TG                L       ++ + 
Sbjct: 3   VSTPEFYQSSLSGLLNQQSTLNNLSQQLSTGNVLIDPSSNPVAYAQTLNLSARIANLNQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             SN+   + L  S + L S+  ++  +    V +  G  + N        ++ + +  V
Sbjct: 63  QQSNNYAQQNLQLSSSTLQSVSTLINQVQQLAVQMNNGTVNGNDLQNAVTAMQGNLQQLV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN 149
             AN  D  G Y+F G  S+  P  
Sbjct: 123 QLANTQDANGSYIFGGSESNRPPFQ 147


>gi|169831933|ref|YP_001717915.1| flagellar hook-associated protein 3 [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638777|gb|ACA60283.1| flagellar hook-associated protein 3 [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 310

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 121/355 (34%), Gaps = 51/355 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST   ++ +       +  + ++ E++ +G+  +   +  A ++ +L      + I + 
Sbjct: 3   ISTHLFYKNLLSSIHREHLGAARVQEQIASGRRINRLSEDPAALSQVLSLRTATSEIRDY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + S  L   RL+ ++  L+   +++QD     V    G    +     A  +        
Sbjct: 63  VLSIDLQRSRLNRAEEALAQATQVMQDARVMAVQGATGTYSPSDLKNLAFEVDRMI---- 118

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
                                                   L GF   +   +      E 
Sbjct: 119 --------------------------------------TALVGFANASRGGVKPEGLFER 140

Query: 186 SSMNAQQMTDFIK-QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           + ++ Q+M  +   ++  +    E W       + + +   I   +   V A  +  G  
Sbjct: 141 TVVDGQEMVVYTPPEVWLEQVTGEGWGRV---LTLNKLVETIDPGQVFQVEAMKDEGG-- 195

Query: 245 DIMFVAVIGTEFLS--KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
           + +  A +          L  G ++ +   ++  ++  +  +++ R  LG     + + +
Sbjct: 196 NPVLRATMFDALFDLRDRLMAGEQSGVAG-LIGVLEGHIDTLLQGRGDLGSRGYQLEKLQ 254

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +Q +N  +   +SK    +   A  +++     ++ +     +L  +S+LNYL
Sbjct: 255 AQIQIQNEQLTEVLSKIGDTDVAEAVIRINRHELVLQATLSTAARLMHVSLLNYL 309


>gi|120598239|ref|YP_962813.1| flagellar hook-associated protein FlgL [Shewanella sp. W3-18-1]
 gi|120558332|gb|ABM24259.1| flagellar hook-associated protein 3 [Shewanella sp. W3-18-1]
          Length = 403

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 57/408 (13%), Positives = 140/408 (34%), Gaps = 63/408 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEWEQEKN 60
           +S++ IF +      +    + K+ E++ +G+       D    LG          Q   
Sbjct: 3   LSSAQIFNQSITSVLQKQTATSKILEQLSSGKKVNTAGDDPVAALGID-----NLNQRNA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + + +    T RL+ +++ L S + +   +   ++  + G   +++  + A  ++ S
Sbjct: 58  LVDQFMKNIDYATNRLAVTESKLGSAENLASSIREQVMRAVNGTLADSERQMIADEMKGS 117

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ-----------MLQG 168
            E  ++ AN  D  G Y+FSG ++ ++P     +       S D             L  
Sbjct: 118 LEELLSIANSKDESGNYMFSGYSTDKEPFAFDNSTPPQIVYSGDSGVRNSLVQTGVALGT 177

Query: 169 FLEENSKSLLAGQHLEVSSMN--AQQMTDF------IKQLEDKFSDDE--YWANNWSNAS 218
            +  ++  + A   L   S+N  A Q  +F      I       +D     + +N    +
Sbjct: 178 NVPGDTAFMKAPNGLGDYSVNYLASQQGEFSVKAAKIADTSTYLADTYTFNFTDNGVGGT 237

Query: 219 D-----------------------------HNIKYRIKDTEGIDVSANVNMRGIRDIMFV 249
           +                               +  +    +   +     +     I   
Sbjct: 238 NLQVLDSANNPVANVTNFDATTPVSFNGIEVKVSGKPSAGDSFTMEPQAEVSIFDTISSA 297

Query: 250 AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
             +  +  S N   G       ++L+ +  G++ I   R+V G + K +   +     + 
Sbjct: 298 IALIEDPNSANTPQG--RAQLAQILNDIDSGVNQISSARSVAGNNLKAVESYKDTHIEEQ 355

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  + +S    ++  +A  +       +     + +K+  +S+ +Y+
Sbjct: 356 VLNTSALSLLEDLDYASAITEFEKQQLALNAVSSVFSKVGSVSLFDYI 403


>gi|188991634|ref|YP_001903644.1| flagellar hook-associated protein FlgL [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733394|emb|CAP51595.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 401

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 59/398 (14%), Positives = 119/398 (29%), Gaps = 44/398 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  ISTS ++ +             +L  ++ +GQ             + +  ++    
Sbjct: 1   MTNRISTSMMYSQSVSAMTAKQSRLNQLEAQLSSGQRLVTAKDDPVAAGTAVGLDRALAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I     + + V  RL   +  L+     +  +    V         +     A  L    
Sbjct: 61  ITRFGENANNVQNRLGLQENALAQAGDKMARVTELAVQSNNSSLSPDDRKAIASELTALR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKS 176
           +S V+ AN TD  G+YLF+G +    P               +K  +     F+ +    
Sbjct: 121 DSMVSLANSTDGTGRYLFAGTSDGNAPFIKSNGNVLYNGDQTQKQVEVAPDTFVSDTLPG 180

Query: 177 LL------AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSN----ASDH------ 220
                    G     +  NA      +     + +    W     +    A+D       
Sbjct: 181 SEIFMRIRTGDGSVDAHANATNTGTGLLLDFSRDASSGSWNGGSYSVQFTAADTYEVRDS 240

Query: 221 -------------------NIKYRIKDTEGIDVSANVNMRGIRDIMFVA-VIGTEFLSKN 260
                               ++ RI     +  S  +   G +D+      +     S  
Sbjct: 241 TNALVSTGTYKDGEDINAAGVRMRISGAPAVGDSFQIGASGTKDVFSTIDDMVAALNSDT 300

Query: 261 LTDGARNVLTKK---MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
            T   +  +       +  + Q  S +I+ RA  G     I+     L++    + T +S
Sbjct: 301 QTPTQKAAMINTLQSSMRDIAQASSKMIDARASGGAQLSAIDNANSLLESNEVTLKTTLS 360

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
               ++  +A  Q       ++ +  I  ++Q  S+ N
Sbjct: 361 SIRDLDYASAIGQYELERASLQAAQTIFQQMQSSSLFN 398


>gi|237653576|ref|YP_002889890.1| flagellar hook-associated protein FlgL [Thauera sp. MZ1T]
 gi|237624823|gb|ACR01513.1| flagellar hook-associated protein 3 [Thauera sp. MZ1T]
          Length = 302

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 110/353 (31%), Gaps = 55/353 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ I+++  I  ++ +   +   +++ TG+               L+  Q K+   + 
Sbjct: 3   VSTNMIYDQGVIALQKQSAALLHTGQQIATGRKILTPSDDPVASARALDVSQSKSVNQQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +       L      L    +I+Q     ++         +     A  LR  +++ +
Sbjct: 63  ITNQGYADDALKLVDGQLDGAGEIIQYARERVLAAGNPALSPSDRQSIASDLRSQFDAML 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G YLF+G  S+  P     T  +L            ++ +S   +      
Sbjct: 123 AIANTRDANGDYLFAGYRSNTPPFEKTVTAGTLGSDYKGDQGSRTMQVSSSRFMPISFGG 182

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            S   ++   D + ++  +F        + S A    +                      
Sbjct: 183 ESVFGSE--GDGVFKVLGEFISALEGGGDVSGAVSTAL---------------------- 218

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                           L D     LT                 RA +G  +  + +    
Sbjct: 219 --------------GGLDDSLDRTLT----------------VRAQIGSQQVEVEQLGFI 248

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             + +    T +S    ++ + A ++L+     +E +     K   LS+ NYL
Sbjct: 249 GSDLDLQYQTTLSNLQDLDYNEAISRLTQQRTFLEAAQQSFLKTTGLSLFNYL 301


>gi|212640401|ref|YP_002316921.1| flagellar hook-associated protein FlgL [Anoxybacillus flavithermus
           WK1]
 gi|212561881|gb|ACJ34936.1| Flagellar hook-associated protein [Anoxybacillus flavithermus WK1]
          Length = 290

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/328 (11%), Positives = 98/328 (29%), Gaps = 65/328 (19%)

Query: 30  HEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKI 89
            +++ TG+      +        + +      I +   + S     +  S++ L+    +
Sbjct: 27  QQQLATGKKIHRPSEDPVVAMKGMHYRTSLTEIEQFQRNLSEAYTWMENSESALNHTTNV 86

Query: 90  VQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLN 149
           +Q     +V    G          A  +    +  V  AN    G+Y+F+G N  + P+ 
Sbjct: 87  LQRARELVVQGKNGTLGQEDRRAIAREIEQLKKDLVQVANTKVAGKYIFNGTNIEQAPVT 146

Query: 150 GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY 209
                              F+ E +K +    ++  +++  Q + D ++Q+E++ +    
Sbjct: 147 DGTPPTVTNNN------DDFMVEVAKGVKLKINVTPNNVFNQGLFDTLQQIENELASPTN 200

Query: 210 WANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVL 269
             +N                                           L   L     +VL
Sbjct: 201 SLDN-------------------------------------------LLSQLDGHINDVL 217

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            ++                  LG     +      L  +  I    IS +   +      
Sbjct: 218 AERA----------------ELGARVNRLELVEQRLSEQQLIAKRMISDNEDADIEKIIT 261

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           +L +  +    +  +  ++ + +++++L
Sbjct: 262 ELKSQESVHRAALSVGARIIQPTLVDFL 289


>gi|256750926|ref|ZP_05491810.1| flagellar hook-associated protein 3 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750261|gb|EEU63281.1| flagellar hook-associated protein 3 [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 297

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 37/125 (29%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             K    + TG+           V + L    +         +       L  + + L+ 
Sbjct: 23  LQKNQNMLSTGKKISRPSDDPVAVATSLRIRTDMARNDAYTKNADYAKSWLDITDSALNQ 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           +  ++Q      V    G          A  +       +   N    G+Y+F+G  ++ 
Sbjct: 83  LGDLLQRTRELAVQGANGTLTQADMQKMANEIEQLKAQMIQVGNTQYNGRYIFAGFKTTT 142

Query: 146 KPLNG 150
           +P + 
Sbjct: 143 QPFSE 147



 Score = 39.3 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 250 AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
            ++  + L   L  G    ++  ++  V + +  ++  RA +G     I+  +  LQ+ N
Sbjct: 190 LLVMMDNLKSALDSGDHQAVSNLIVD-VDKQMENVLAVRAEVGAKSNRIDLIQNRLQDDN 248

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 +SK+  V+       L    N    S     ++ + S++++L
Sbjct: 249 YNFTALLSKNEDVDLAQVITNLQMDENVYRASLAAGARIIQPSLIDFL 296


>gi|89092143|ref|ZP_01165098.1| Flagellin-like [Oceanospirillum sp. MED92]
 gi|89083878|gb|EAR63095.1| Flagellin-like [Oceanospirillum sp. MED92]
          Length = 415

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/416 (13%), Positives = 131/416 (31%), Gaps = 68/416 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IST  +F        + + D  K  +++ TG+     SD  L        I ++++E   
Sbjct: 3   ISTQQVFLNNIDNISKTSADVFKTQQQLSTGKKVLQPSDDPLA----SAQIQKFKKEIAR 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   +  +  +RL   +  +  +      +    +    G  ++      A  +    
Sbjct: 59  TEQYNSNIEVSERRLQLEENTIEQINNQSIRLRELTIQGKTGTLNDTDRAAIASEVDQII 118

Query: 122 ESFVTFANMT-DEGQYLFSGINSSEKPLN----------------GYFTKDSLAKKSFDQ 164
           +S     N    +G++LFSG     +P                   +       K +   
Sbjct: 119 KSLDGLMNTKDVQGEFLFSGNKGFTEPYTIDPRTGRYVFNGDDGQRFLQVGPETKVASTD 178

Query: 165 MLQGFLEENSK------SLLAGQHLEVSSMNAQQMTDFIKQLEDK------FSDDEY-WA 211
                 E   K      + +     +++S   +    F     ++      F+D    ++
Sbjct: 179 SGFDIFETVPKVSGYVIADINQTSQQIASNEIKDADAFDAFTVERGALQITFNDGAGTFS 238

Query: 212 NNWSNASDHNIKY-------------------RIKDTE------GIDVSANVNMRGIRDI 246
              S      +                     ++  TE        D +  V+     +I
Sbjct: 239 VTDSQTPPQPVSSDDTPPVVLTNVAFNDGDVIKVAGTELTVGNITADSTITVDAISQHNI 298

Query: 247 MFVAV-IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGI----IEQRAVLGISEKNINEE 301
           +  A+ +  E  + + T         + +  + + LSGI    +  RA +G     + ++
Sbjct: 299 LNTALDLKAELENADFTTQEGKDKFNERMDHILENLSGIEELNVGTRANIGGRLNTLEQQ 358

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                +        +S    ++ + A +Q       ++ +Y    ++Q L++ N+L
Sbjct: 359 MSVNTDYELFTTESLSAFEDLDYNEAISQFQLQQTVLQAAYSSFARVQDLNLFNFL 414


>gi|254225808|ref|ZP_04919413.1| flagellar hook-associated protein FlgL [Vibrio cholerae V51]
 gi|125621714|gb|EAZ50043.1| flagellar hook-associated protein FlgL [Vibrio cholerae V51]
          Length = 397

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/405 (12%), Positives = 126/405 (31%), Gaps = 65/405 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q++  
Sbjct: 5   ISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLA----THYIQNVGQQEEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + L +  LV  RL   +  +S+ ++        ++ ++ G          A +L++  
Sbjct: 61  LRQYLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+  AN+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 NNFINLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGDDYQRKMKISNSLEIPFNNP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-SMNAQQMTDFIKQLEDKFSDDEYWA-- 211
            S            +    +    +   LE + ++N    + +     D       +   
Sbjct: 181 GSKVFMEIPNPFGSYEPNYALQEGSELLLERAVNLNPDDTSSYRVTFVDMPEGKNGYQLE 240

Query: 212 NNWSNAS---------------DHNIKYRIKDTEGID----VSANVNMRGIRDIMFVAVI 252
            N S                  +  +K +I   + I+     + +V     RD +  A  
Sbjct: 241 RNGSVVQAGEFDAKTGIQFEELNIQLKGQISKGDAIELTPRTTFSVFDT-FRDAIRYA-- 297

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
                  +++D +      +++         + + R  +G     ++ +    ++    +
Sbjct: 298 -----EGSVSDASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKISL 352

Query: 313 DTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               S    ++   A    +     +E S     K + L++ NY+
Sbjct: 353 AKSKSTFEDLDYAEAVIDFNENSRALEASQKAFGKTKDLTLFNYI 397


>gi|167038178|ref|YP_001665756.1| flagellar hook-associated protein FlgL [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039113|ref|YP_001662098.1| flagellar hook-associated protein FlgL [Thermoanaerobacter sp.
           X514]
 gi|300913297|ref|ZP_07130614.1| flagellar hook-associated protein 3 [Thermoanaerobacter sp. X561]
 gi|307723689|ref|YP_003903440.1| flagellar hook-associated protein 3 [Thermoanaerobacter sp. X513]
 gi|320116587|ref|YP_004186746.1| flagellar hook-associated protein 3 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166853353|gb|ABY91762.1| flagellar hook-associated protein 3 [Thermoanaerobacter sp. X514]
 gi|166857012|gb|ABY95420.1| flagellar hook-associated protein 3 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300889982|gb|EFK85127.1| flagellar hook-associated protein 3 [Thermoanaerobacter sp. X561]
 gi|307580750|gb|ADN54149.1| flagellar hook-associated protein 3 [Thermoanaerobacter sp. X513]
 gi|319929678|gb|ADV80363.1| flagellar hook-associated protein 3 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 297

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 37/125 (29%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             K    + TG+           V + L    +         +       L  + + L+ 
Sbjct: 23  LQKNQNMLSTGKKISRPSDDPVAVATSLRIRTDMARNDAYTKNADYAKSWLDITDSALNQ 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           +  ++Q      V    G          A  +       +   N    G+Y+F+G  ++ 
Sbjct: 83  LGDLLQRTRELAVQGANGTLTQADMQKMANEIEQLKAQMIQVGNTQYNGRYIFAGFKTTT 142

Query: 146 KPLNG 150
           +P + 
Sbjct: 143 QPFSE 147



 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 1/108 (0%)

Query: 250 AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
            ++  + L   L  G    ++  ++  V + +  ++  RA +G     I+  +  LQ+ N
Sbjct: 190 LLVMMDNLKSALDSGDHQAVSNLIVD-VDKQMENVLAVRAEVGAKSNRIDLIQNRLQDDN 248

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 +SKS   +       L    N    S     ++ + S++++L
Sbjct: 249 YNFTALLSKSEDADLAQVITNLKMDENVYRASLAAGARIMQPSLIDFL 296


>gi|253688965|ref|YP_003018155.1| flagellar hook-associated protein 3 [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755543|gb|ACT13619.1| flagellar hook-associated protein 3 [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 317

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 112/355 (31%), Gaps = 51/355 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++             K  E++ TG+             S +   Q ++  ++ 
Sbjct: 3   LSTSMMYQQNMQGIINGQATWQKTGEQLSTGKRVVNPSDDPIAAASAIMLGQAQSENSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +   + +S  ++ L+     +   +   VI   G  +++     A  LR      +
Sbjct: 63  TLARTFAKQSMSLEESILNKSSTTITSALTE-VIKGGGVLNDDDRKSVATSLRGMKAELL 121

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNG------YFTKDSLAKKSFDQMLQGFLEENSKSLL 178
             AN TD  G Y+FSG  +   P         Y   +    +  D      +     ++ 
Sbjct: 122 NMANSTDGNGNYIFSGYETDNPPFVDGATGIQYVGGNQAISQRVDSARNMTVGHTGSAVF 181

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
            G       +      +    ++                            E +D++   
Sbjct: 182 NG-------VTGDAKKEPDGSIQSDLF------------------------ETLDIAIKA 210

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
               + D            + ++T        +     +   L+ I   RA LGI    I
Sbjct: 211 LETPLAD------------ADDVTKANVAAALETANRGLNNSLNNISSVRAELGIQLNEI 258

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +      ++++    T +S+    + + A +      + ++ SY     +Q +S+
Sbjct: 259 DNLDAVGKDRDVANKTTLSQLQDTDWYEAISSYIMQQSSLQASYTAFQNMQGMSL 313


>gi|187926947|ref|YP_001893292.1| flagellar hook-associated protein 3 [Ralstonia pickettii 12J]
 gi|241665276|ref|YP_002983635.1| flagellar hook-associated protein 3 [Ralstonia pickettii 12D]
 gi|187728701|gb|ACD29865.1| flagellar hook-associated protein 3 [Ralstonia pickettii 12J]
 gi|240867303|gb|ACS64963.1| flagellar hook-associated protein 3 [Ralstonia pickettii 12D]
          Length = 319

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 116/354 (32%), Gaps = 41/354 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+  F   +   +    + + L +++ +G + +      +    + + +Q ++   + 
Sbjct: 3   VSTAQFFALSSASMQNTQSNLLTLQQQLASGIALNSAGDNPSAFGQMAQLQQTQDANDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      RL+   + L+++   +Q     +V        +++       ++  Y+  +
Sbjct: 63  QVNRDATDARLTNVSSALTNLVTTLQQGKQSMVGANTSLMTDSQRIGVLAQVKQQYQQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  G  LF G N +  P                  +Q     +  + +AG  + 
Sbjct: 123 SIANQRDPSGVALFGGANGTTDPFVSSGGSVQYVGTGQPPTVQVSQNISMPNSVAGDSVF 182

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM-RGI 243
           V                                       RI +T+  + SAN ++ +  
Sbjct: 183 V---------------------------------------RIPNTDPANPSANQSIFKTY 203

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            +++          ++     +     +     +       ++ +  +G  +  I     
Sbjct: 204 ENLITALSTPINAATQATDVASLQKAVQTAQGNLDNAYQVALQAQVTVGTQQAQITTLNS 263

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              N    +   ISK   V+  +A +Q S     ++ +    T +Q +S+  Y+
Sbjct: 264 SGSNYGEQLKEQISKLQSVDYTSAISQFSQQQVSLQAAQKTFTAMQGMSLFQYI 317


>gi|223039734|ref|ZP_03610019.1| bacterial flagellin N-terminus domain protein [Campylobacter rectus
           RM3267]
 gi|222878926|gb|EEF14022.1| bacterial flagellin N-terminus domain protein [Campylobacter rectus
           RM3267]
          Length = 775

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 5/175 (2%)

Query: 24  KDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83
           K   KL+ ++ +G       +  +     +  + E   + +   + S        +   L
Sbjct: 45  KALYKLNTQISSGLKIQNSFEDSSVYNDGMRLDYEVATLEQVQTATSKAQHFSKNTDKAL 104

Query: 84  SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS 143
           S  ++ ++     LV               A  L+      V  AN +  GQ+LF+G   
Sbjct: 105 SEFKQQLERFKTKLVQGANEIHSQTSREAIANDLQGIKNHLVNIANTSINGQFLFAGSAI 164

Query: 144 SEKPLNG----YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-SMNAQQM 193
           + KP+NG    Y+      K      +     +N   L  G+  + +  + +  M
Sbjct: 165 NTKPINGETNEYYGNAQSMKAVGGAQVNLTYNQNGHELFLGKDGDYAKKITSNTM 219


>gi|50120646|ref|YP_049813.1| flagellar hook-associated protein FlgL [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611172|emb|CAG74618.1| flagellar hook-associated protein 3 [Pectobacterium atrosepticum
           SCRI1043]
          Length = 317

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 108/349 (30%), Gaps = 39/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++             K  E++ TG+              ++   Q ++  ++ 
Sbjct: 3   LSTSMMYQQNMQGIINGQATWQKTGEQLSTGKRVVNPSDDPIAAAGVVMLGQAQSENSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +   + ++  ++ L      V   +   VI   G  +++     A  LR      +
Sbjct: 63  TLARTFAKQSMTLEESILGKSTTTVSSALTE-VIKGGGVLNDDDRKSVATSLRGMKAELL 121

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G Y+FSG  + + P           K  F  + Q        ++       
Sbjct: 122 NMANSTDGNGNYIFSGYETDKAPFVE-GAAGIEYKGGFQAISQRVDAARDMTVSHVGSAV 180

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            + +      +    ++                            E +D++       + 
Sbjct: 181 FNGITGDAKKEPDGSIQSDLF------------------------ETLDIAIKALETPL- 215

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                        + + T        +     +    + I   RA LGI    ++     
Sbjct: 216 -----------DGADDATKAGVAAALETANRGLNNSFNNISAVRAELGIQLNEVDNLDAV 264

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++++    T +S+    + + A +      + ++ SY     +Q +S+
Sbjct: 265 GKDRDVANKTTLSQLQDTDWYEAISSYIMQQSSLQASYTSFQNMQGMSL 313


>gi|255030456|ref|ZP_05302407.1| flagellar hook-associated protein FlgL [Listeria monocytogenes
           LO28]
          Length = 274

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 58/133 (43%)

Query: 23  NKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH 82
           + +  K   ++ +G+  +   +       IL +    + +       +     L+T++  
Sbjct: 3   SGNLAKYQLQVSSGKKYESMSENPGATAQILSYNHVLSQLNREKTDVTEAKSLLNTAETS 62

Query: 83  LSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGIN 142
           LSSM   +  +   ++  + G +D +    +A  ++   +  ++ AN  D+G+Y+FSG +
Sbjct: 63  LSSMSTSMNRVNALVLQAINGTSDKDNMSQSAEEIKGLLDVLISVANSEDDGRYVFSGSS 122

Query: 143 SSEKPLNGYFTKD 155
           +S KP     T  
Sbjct: 123 TSVKPFTTDKTTG 135



 Score = 37.4 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 15/196 (7%)

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFS--DDEYWANNWSNASDHNIKYRIKDTEGID 233
           ++      +  S +A+++   +  L    +  DD  +  + S+ S           E I 
Sbjct: 80  AINGTSDKDNMSQSAEEIKGLLDVLISVANSEDDGRYVFSGSSTSVKPFTTDKTTGEIIY 139

Query: 234 VSANVNMRGIRD--------IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTV----QQGL 281
                N +  R             + +   F +      A     K  LS +     + +
Sbjct: 140 NGTTENKK-FRVTDTLEVEVFHDGSAMTDVFNNIQKIVDAMKTGDKDALSALQETNSKNI 198

Query: 282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
             I      +G  +  +      L +K        S    V    A + L+      + +
Sbjct: 199 EIITNSMTNIGGQKNGVTAYDNVLSSKIVDFSERKSNVEEVNMPEAVSNLNKTSIAYQAA 258

Query: 342 YMITTKLQKLSILNYL 357
              +  +QKLSILNY+
Sbjct: 259 LQSSVMVQKLSILNYM 274


>gi|149366244|ref|ZP_01888279.1| flagellar hook-associated protein 3 [Yersinia pestis CA88-4125]
 gi|153949096|ref|YP_001401282.1| flagellar hook-associated protein FlgL [Yersinia pseudotuberculosis
           IP 31758]
 gi|165926015|ref|ZP_02221847.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938694|ref|ZP_02227249.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010848|ref|ZP_02231746.1| flagellar hook-associated protein 3 [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211142|ref|ZP_02237177.1| flagellar hook-associated protein 3 [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401154|ref|ZP_02306657.1| flagellar hook-associated protein 3 [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420376|ref|ZP_02312129.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425889|ref|ZP_02317642.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467498|ref|ZP_02332202.1| flagellar hook-associated protein FlgL [Yersinia pestis FV-1]
 gi|170024640|ref|YP_001721145.1| flagellar hook-associated protein FlgL [Yersinia pseudotuberculosis
           YPIII]
 gi|186895121|ref|YP_001872233.1| flagellar hook-associated protein FlgL [Yersinia pseudotuberculosis
           PB1/+]
 gi|229896252|ref|ZP_04511422.1| flagellar hook-associated protein 3 [Yersinia pestis Pestoides A]
 gi|229897189|ref|ZP_04512345.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897916|ref|ZP_04513067.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902853|ref|ZP_04517970.1| flagellar hook-associated protein 3 [Yersinia pestis Nepal516]
 gi|270486638|ref|ZP_06203712.1| flagellar hook-associated protein 3 [Yersinia pestis KIM D27]
 gi|294504023|ref|YP_003568085.1| flagellar hook-associated protein [Yersinia pestis Z176003]
 gi|51589300|emb|CAH20921.1| flagellar hook-associated protein 3 [Yersinia pseudotuberculosis IP
           32953]
 gi|115347540|emb|CAL20449.1| flagellar hook-associated protein 3 [Yersinia pestis CO92]
 gi|149292657|gb|EDM42731.1| flagellar hook-associated protein 3 [Yersinia pestis CA88-4125]
 gi|152960591|gb|ABS48052.1| flagellar hook-associated protein 3 [Yersinia pseudotuberculosis IP
           31758]
 gi|165913308|gb|EDR31930.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922219|gb|EDR39396.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990192|gb|EDR42493.1| flagellar hook-associated protein 3 [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166208322|gb|EDR52802.1| flagellar hook-associated protein 3 [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962071|gb|EDR58092.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049543|gb|EDR60951.1| flagellar hook-associated protein 3 [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055288|gb|EDR65085.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169751174|gb|ACA68692.1| flagellar hook-associated protein 3 [Yersinia pseudotuberculosis
           YPIII]
 gi|186698147|gb|ACC88776.1| flagellar hook-associated protein 3 [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680300|gb|EEO76399.1| flagellar hook-associated protein 3 [Yersinia pestis Nepal516]
 gi|229688957|gb|EEO81022.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693526|gb|EEO83575.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701175|gb|EEO89204.1| flagellar hook-associated protein 3 [Yersinia pestis Pestoides A]
 gi|262361791|gb|ACY58512.1| flagellar hook-associated protein [Yersinia pestis D106004]
 gi|262366073|gb|ACY62630.1| flagellar hook-associated protein [Yersinia pestis D182038]
 gi|270335142|gb|EFA45919.1| flagellar hook-associated protein 3 [Yersinia pestis KIM D27]
 gi|294354482|gb|ADE64823.1| flagellar hook-associated protein [Yersinia pestis Z176003]
 gi|320015456|gb|ADV99027.1| flagellar hook-associated protein 3 [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 326

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 109/351 (31%), Gaps = 35/351 (9%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++            ++  +++ TG+            +  +   Q ++  ++ 
Sbjct: 3   LSTSMLYQQNMQGITNAQSLWMQTGQQLSTGKRVVNPSDDPMAASQAVMVSQAESENSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S   +  S     L+     +Q +   ++        ++     A  L+   +  +
Sbjct: 63  TLARSFARQSSSLETTVLAQTTSTIQSIQSLVISAKNDTLSDDDRASYATQLQGLKDQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSK--SLLAGQH 182
             AN TD  G+Y+F+G  S + P               D     ++  +      +    
Sbjct: 123 NQANTTDGNGRYIFAGFKSDKPPF-----------AVSDTGEVTYVGGDVAIEQKVDTNR 171

Query: 183 LEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242
              +      +   +        DD              +       + ID   N     
Sbjct: 172 SMTAGHTGASVFMALTGNAKPEPDDVN---------GAPVAAEKNIFDTIDTVLNSLKTP 222

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
           ++             + +           K L  +   L+ ++  +A +G+  + ++   
Sbjct: 223 LQ------------GASDEVKAQAQADLDKGLRGLSNSLNNVLSVQAEIGVQLQELDNLD 270

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
               ++  I    +S    V+  +A +        ++ SY   T +Q LS+
Sbjct: 271 SLGGDRTLINKQQLSDLQDVDWTSAISSYVMQQAALQASYTTFTNMQGLSL 321


>gi|319427082|gb|ADV55156.1| flagellar hook-associated protein 3 [Shewanella putrefaciens 200]
          Length = 403

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/408 (13%), Positives = 138/408 (33%), Gaps = 63/408 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEWEQEKN 60
           +S++ IF +      +    + K+ E++ +G+       D    LG          Q   
Sbjct: 3   LSSAQIFNQSITSVLQKQTATSKILEQLSSGKKVNTAGDDPVAALGID-----NLNQRNA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + + +    T RL+ +++ L S + +   +   +V  + G   +++  + A  ++ S
Sbjct: 58  LVDQFMKNIDYATNRLAVTESKLGSAENLTSSIREQVVRAVNGTLADSERQMIADEMKGS 117

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ-----------MLQG 168
            E  ++ AN  D  G Y+FSG ++ ++P     +       S D             L  
Sbjct: 118 LEELLSIANSKDESGNYMFSGYSTDKEPFAFDNSIPPKIVYSGDSGIRNSLVQSGVALGT 177

Query: 169 FLEENSKSLLAGQHLEVSSMN--AQQMTDF------------------------------ 196
            +  +S  + A   L   S+N  A Q  +F                              
Sbjct: 178 NVPGDSAFMKAPNGLGDYSVNYLASQQGEFSVKTAKIADASTYLADTYTFNFIDNGLGGT 237

Query: 197 -------IKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFV 249
                          ++ +       N  +  +  +    +   +     +     I   
Sbjct: 238 NLQVLDSANNPVANVTNFDATTPVSFNGIEVKVSGKPSAGDSFTMEPQAEVSIFDTISSA 297

Query: 250 AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
             +  +  S N   G       ++L+ +  G++ I   R+V G + K +   +     + 
Sbjct: 298 IALIEDPNSANTPQG--RAQLAQILNNIDSGVNQISSARSVAGNNLKAVESYKETHTEEK 355

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  + +S+   ++  +A  +       +     + +K+  +S+ +++
Sbjct: 356 VVNTSALSRLEDLDYASAITEFEKQQLALNAVSSVFSKVGSVSLFDFI 403


>gi|288940416|ref|YP_003442656.1| flagellar hook-associated protein 3 [Allochromatium vinosum DSM
           180]
 gi|288895788|gb|ADC61624.1| flagellar hook-associated protein 3 [Allochromatium vinosum DSM
           180]
          Length = 425

 Score = 53.6 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS IF+      +       K   ++ TGQ            T  ++++       + 
Sbjct: 3   ISTSQIFQSGLSAMQGAQSKFNKTGLQLATGQRILTPADDPGGATQSVQFKAAIKATEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      +L   +A L ++  ++Q     +V       +     I A  +R   E  +
Sbjct: 63  QRNADYAQPKLEYEEAQLIALGNVLQRARELVVAGNNDTYNPENRKIIASEIRQLREDIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
             AN  D  G+YLF+G  S  +P 
Sbjct: 123 GLANSEDANGEYLFAGTRSQHQPF 146



 Score = 43.9 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 252 IGTEFLSKNLTDGARNVL---TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNK 308
           I T F +    +  R  L   T   LS +  GL  + E R  +G+    ++ +      +
Sbjct: 317 IATAFETPATDETTRESLSQATSMALSNLDSGLDRVNEVRTSVGLRLDALDTQAGLNDER 376

Query: 309 NNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              +++ +S    ++   A ++       ++ +    T++ +LS+ ++L
Sbjct: 377 LVDLNSTLSDIQDLDYAEAISRFMLQRTVLQAAQQTYTQVSRLSLFDFL 425


>gi|325923281|ref|ZP_08184954.1| flagellar hook-associated protein 3 [Xanthomonas gardneri ATCC
           19865]
 gi|325546208|gb|EGD17389.1| flagellar hook-associated protein 3 [Xanthomonas gardneri ATCC
           19865]
          Length = 401

 Score = 53.6 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/400 (14%), Positives = 119/400 (29%), Gaps = 44/400 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  ISTS ++ +             +L  ++ +GQ             + +  ++    
Sbjct: 1   MTDRISTSMMYSQSVSSMTAKQSRLNQLEAQLASGQRLVTAKDDPVAAGTAVGLDRALAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I     + + V  RL   +  L+     +  +    +         +     A  L    
Sbjct: 61  ITRFGENANNVKNRLGLQENVLAQAGDAMARVNELTIQANSSALGPDDRKAIASELTALR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKS 176
           +S V+ AN TD  G+YLF G      P      G        ++  +     F+ +    
Sbjct: 121 DSMVSLANSTDGTGRYLFGGTADGSAPFIKSNGGVVYNGDQTQRQVEVAPDTFVSDTLPG 180

Query: 177 LL------AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA------------------- 211
                    G     +  N+      +     + +    W                    
Sbjct: 181 SEIFMRIRTGDGNVDAHANSANTGTGLLLDFSRDASTGSWNGGSYSVQFTAANTYEVRDS 240

Query: 212 ----------NNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVA-VIGTEFLSKN 260
                      +  + +   ++ RI     +  S  +     +D+      +     S  
Sbjct: 241 TNAVVSTGTYKDGEDITAAGVRMRISGAPAVGDSFQIGASTTKDVFSTIDDLVGALNSDT 300

Query: 261 LTDGARNVLTK---KMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
           LT   +  +       +  + Q  S +I+ RA  G     I+     L++    + T +S
Sbjct: 301 LTPPQKAAMINTLQTSMRDISQASSKMIDARASGGAQLSAIDNANALLESNEVTLKTTLS 360

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++  +A  Q       ++ +  I+ ++Q  S+ N L
Sbjct: 361 SIRDLDYASAIGQYQLEKASLQAAQTISQQMQSSSLFNLL 400


>gi|21231390|ref|NP_637307.1| flagellar hook-associated protein FlgL [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768557|ref|YP_243319.1| flagellar hook-associated protein FlgL [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113055|gb|AAM41231.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573889|gb|AAY49299.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 401

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 57/398 (14%), Positives = 118/398 (29%), Gaps = 44/398 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  ISTS ++ +             +L  ++ +GQ             + +  ++    
Sbjct: 1   MTNRISTSMMYSQSVSAMTAKQSRLNQLEAQLSSGQRLVTAKDDPVAAGTAVGLDRALAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I     + + V  RL   +  L+     +  +    V         +     A  L    
Sbjct: 61  ITRFGENANNVQNRLGLQENALAQAGDKMARVTELAVQSNNSSLSPDDRKAIASELTALR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKS 176
           +S V+ AN TD  G+YLF+G      P               ++  +     F+ +    
Sbjct: 121 DSMVSLANSTDGTGRYLFAGTADGNAPFIKSNGNVLYNGDQTQRQVEVAPDTFVSDTLPG 180

Query: 177 LL------AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSN----ASDH------ 220
                    G     +  NA      +     + +    W     +    A+D       
Sbjct: 181 SEIFMRIRTGDGSVDAHANATNTGTGLLLDFSRDASSGSWNGGSYSVQFTAADTYEVRDS 240

Query: 221 -------------------NIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
                               ++ RI     +  S  +   G +D+          L+ + 
Sbjct: 241 TNALVSTGTYKDGGDINAAGVRMRISGAPAVGDSFQIGASGTKDVFSTIDDMVAALNSDT 300

Query: 262 TDGARNVLT----KKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
               +        +  +  + Q  S +I+ RA  G     I+     L++    + T +S
Sbjct: 301 QTPTQKAAMINTLQSSMRDIAQASSKMIDARASGGAQLSAIDNANSLLESNEVTLKTTLS 360

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
               ++  +A  Q       ++ +  I  ++Q  S+ N
Sbjct: 361 SIRDLDYASAIGQYELERASLQAAQTIFQQMQSSSLFN 398


>gi|328543141|ref|YP_004303250.1| hypothetical protein SL003B_1522 [polymorphum gilvum SL003B-26A1]
 gi|326412887|gb|ADZ69950.1| hypothetical protein SL003B_1522 [Polymorphum gilvum SL003B-26A1]
          Length = 511

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 62/177 (35%), Gaps = 4/177 (2%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           +     +L+    +   ++ +G+ +     +G +    LE  Q+   I     + ++   
Sbjct: 13  LTQQLSKLSNSMTEKTAQLASGKKATTYGGIGNQRLLDLELTQKVTRIESYEQTITMAKL 72

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
            + T    L  M+K+  +    + +       + +               ++  N    G
Sbjct: 73  HIETLNLTLDRMEKLRIEAKDTMDLNNFELQSDGQTST-QATAEILLHEVISLLNAEIGG 131

Query: 135 QYLFSGINSSEKPL--NGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN 189
            YLF G +++  P+            K     +L  F + N  +   G+ L+VS++ 
Sbjct: 132 HYLFGGSDANTNPVLEVDQILHGRDGKAGLLTVLDEFAQANLGAGGMGR-LDVSALT 187



 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 61/203 (30%), Gaps = 15/203 (7%)

Query: 161 SFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDH 220
           + D     F       +        + + A             +  +     N    +  
Sbjct: 318 AADSFFDTFGGAEPMRVAGPPFDTATGLIAGG-----SATVAWYRGENTPTAN----ART 368

Query: 221 NIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLST---- 276
           +    + D   I      N +G+ D++            + T  A N  +          
Sbjct: 369 DKTAVVDDNLRIGYGVRANEQGLADVVKTLATFVAADFSSGTATAENYYSALAGDLKSTL 428

Query: 277 --VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTL 334
             +    SGI+     + ++ K I           +     I K  G+++ T   +L  +
Sbjct: 429 QPLGTDRSGIVGITTEIAVAYKTIGYTSDRHTLMKSSYLGTIDKIEGIDKETVAIELLQM 488

Query: 335 INKIEMSYMITTKLQKLSILNYL 357
              IE SY  T+ +  LS+ NY+
Sbjct: 489 QTNIEASYRATSIVLNLSLTNYI 511


>gi|146305257|ref|YP_001185722.1| flagellar hook-associated protein FlgL [Pseudomonas mendocina ymp]
 gi|145573458|gb|ABP82990.1| flagellar hook-associated protein 3 [Pseudomonas mendocina ymp]
          Length = 305

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ S I   M+      + +  KL ++M +G+              +L  ++E+  + + 
Sbjct: 4   ITNSQITSMMHNSMNASSAELGKLMQQMASGKRILLPSDDPIASVRVLRVQREEASLEQF 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + V+  LST +A+L S    + ++   L+    G   +      AG L    ++  
Sbjct: 64  RKNIANVSGSLSTQEANLKSTSDSMLNVRDLLLWAANGSNTSEDLAAMAGELSIIEDTIF 123

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           +FAN+ DE G+YLFSG  S    L+      + +    D+  Q  +              
Sbjct: 124 SFANVRDEEGRYLFSGTLSDTPALSFDAATQTYSLTGNDKHRQAAVANGVLVDENVTAAS 183

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDT 229
           V       M + ++ L +   D         +ASD  ++ +I DT
Sbjct: 184 VFGA-GVDMLNQLRGLINTLRDPAL------DASDPAVRQQIVDT 221


>gi|138896698|ref|YP_001127151.1| flagellar hook-associated protein FlgL [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268211|gb|ABO68406.1| Flagellar-hook associated protein 3 [Geobacillus
           thermodenitrificans NG80-2]
          Length = 301

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ S +   M         +  K  E++ TG+  +            + +      + + 
Sbjct: 3   VTQSMLANNMLKHLSASYANLGKYQEQLSTGKKINRPSDDPVVAMKGMAYRTNLTEVEQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S     +  S A L    + +Q +   +V       +  +    +  ++   E  V
Sbjct: 63  KRNFSEAYNWIENSDAALDKATQALQRIRELIVQASNDTYEETQRQAISQEIKQLTEHLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLN 149
           T AN     +Y+F+G N+ + P+ 
Sbjct: 123 TIANTKVGDKYIFNGTNTLQPPVQ 146



 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 34/88 (38%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
             + L  + Q ++ ++  RA LG     +      +  +  I    +S +  V+      
Sbjct: 213 INEYLGYIDQHITNLLGVRAELGARMNRVELMEDRINQQEVIAKKVLSDNEDVDMERVIT 272

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
            L    +    +  +  ++ + +++++L
Sbjct: 273 DLKVQESVHRAALAVGARIIQPTLVDFL 300


>gi|261211315|ref|ZP_05925603.1| flagellar hook-associated protein FlgL [Vibrio sp. RC341]
 gi|260839270|gb|EEX65896.1| flagellar hook-associated protein FlgL [Vibrio sp. RC341]
          Length = 397

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/406 (13%), Positives = 126/406 (31%), Gaps = 67/406 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q++  
Sbjct: 5   ISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLA----THYIQNVGQQEEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + L +  LV  RL   +  +S+ ++        ++ ++ G          A +L++  
Sbjct: 61  LRQYLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+  AN+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 SNFLNLANVQDESGNYIFAGTKPKNQPFFRDNQGNVSYAGDDYQRKMKISNSLEIPFNNP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-----SMNAQQMTDFIKQLEDKFSDDEY 209
            S            +    +    +   LE +        A     F+   +   ++   
Sbjct: 181 GSKVFMEIPNPFGSYEPNYALQEGSELLLERAVNLNPDDTAAYRVTFVDMPDG--NNGYQ 238

Query: 210 WANNWS---------------NASDHNIKYRIKDTEGIDVS---ANVNMRGIRDIMFVAV 251
              N S               N  +  +K +I   + ID++           RD +  A 
Sbjct: 239 LERNGSVVQAGEFDPKTGIQFNELNIQVKGQITKGDAIDLTPRDTYSVFDTFRDAIRYA- 297

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
                   +++D +      +++         + + R  +G     ++ +    ++    
Sbjct: 298 ------EGSVSDASNTAKLHQIVEEFHTAFIHLNKTRTDIGARLNTLDIQEEQHEDFKIS 351

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    S    ++   A  + +     +E S     K + L++ NY+
Sbjct: 352 LAKSKSTFEDLDYADAVIEFNENSRALEASQKAFGKTKDLTLFNYI 397


>gi|254458028|ref|ZP_05071455.1| flagellar hook-associated protein [Campylobacterales bacterium GD
           1]
 gi|207085421|gb|EDZ62706.1| flagellar hook-associated protein [Campylobacterales bacterium GD
           1]
          Length = 690

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 77/223 (34%), Gaps = 6/223 (2%)

Query: 20  KELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTS 79
            +L+++   +++++ +G    Y           +  + E   + +   S     K  + +
Sbjct: 12  SKLSQNLFDVNKQIASGLQIQYAKDNVRTFAETMRLDNELATLGQVKMSTQSGYKVSNQT 71

Query: 80  QAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFS 139
              L+  +  +  M   L+    G  D       A  LR     F   AN +  GQYLFS
Sbjct: 72  DVILNEFETTMNRMRTLLLQAANGTNDATSLDSVAKELRGIESHFKGLANSSINGQYLFS 131

Query: 140 GINSSEKPLNGYFT----KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTD 195
           G     KP+    T      S+   +  +  Q +        L  + L    + +    +
Sbjct: 132 GTAVDIKPIADDGTYMGNDKSMNSFTGSKTQQQYNISGGDLFLGEEVLVRREITSNVPQE 191

Query: 196 FIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
            + +             + +   D++I+  + DT+ +  + N 
Sbjct: 192 NLIRKYPALGLPTANTTHMNP--DNSIRDLMGDTDNVIDTVNA 232


>gi|229916659|ref|YP_002885305.1| flagellar hook-associated protein 3 [Exiguobacterium sp. AT1b]
 gi|229468088|gb|ACQ69860.1| flagellar hook-associated protein 3 [Exiguobacterium sp. AT1b]
          Length = 310

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 108/334 (32%), Gaps = 45/334 (13%)

Query: 24  KDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83
               ++ E++++G+      +        + +  E   + +   + S  T  +  + + L
Sbjct: 21  NTLARVQEQLISGKRIQKASEDPVVAMQGIRYRTEVREVDQFRRNVSEATSWMDLTDSTL 80

Query: 84  SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS 143
           + + + V+ +            ++++  I    +    E   + AN     +Y+++G  +
Sbjct: 81  NEVTEAVKRIRELTTQAANDTYESSQREIIKSEVDQLIEHIGSLANSKAGEKYIYNGTKT 140

Query: 144 SEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDK 203
            +                                          +N   +  ++      
Sbjct: 141 DQP----------------------------------------LINVDNLKAYLANPAG- 159

Query: 204 FSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTD 263
            S D  + +  +  +   I++ +     + V+        +++       +  L +  T 
Sbjct: 160 -SVDSIYESGTAPTASGKIEFEVSKGITVQVNMQPETVFGKELFEGLHKLSTLLKETTTT 218

Query: 264 GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
           GA        L T+ Q    +I +RA LG     +      LQ+   I  T +S +  ++
Sbjct: 219 GADLSAELDTLDTLGQ---NLITERAELGARANRLELVDNRLQDHEIIAKTIMSDNEDID 275

Query: 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 +L +       +     ++ + ++L++L
Sbjct: 276 VEKVIMELKSHETVHRAALSAGARIIQPTLLDFL 309


>gi|317492421|ref|ZP_07950850.1| flagellar hook-associated protein 3 [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919760|gb|EFV41090.1| flagellar hook-associated protein 3 [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 326

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 117/354 (33%), Gaps = 41/354 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           +STS ++++      +   +  ++ +++ +G+     SD  L      + ++  +Q +  
Sbjct: 3   LSTSMMYQQNMGSITDAQSEWQRIGQQLTSGKRVINPSDDPLA----ASQLVGLKQAQAQ 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDS 120
             +   +     + +S  ++ L  +   +QD+   LV     G   ++     A  L   
Sbjct: 59  NDQYTMARGYARQGVSMEESVLQQVTSTLQDITPVLVDGASSGSKSDDDRASIAKQLEGM 118

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
            +  +  AN +D  G+Y+F+G  +   P                      +         
Sbjct: 119 RDQLLNLANSSDGNGRYVFAGFKNDTAPFEKVTDP---------------VTGKVTVNYK 163

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
           G    V+          I                   AS + IK   +    +       
Sbjct: 164 GGDTAVTQKVDAARDMTISHTGSDVFQ---------KASSNPIK---EPDGSVSSDIFST 211

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
           ++   D +   + G     K     A           ++  L+ + + RA LG + K ++
Sbjct: 212 LQKAIDALKTPIAGATDAEKKGVSDA----IDSANRGLRNTLNNVSQVRAELGTNLKELD 267

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                   +     + IS +  V+ + + +  S     ++ SY   T +Q +S+
Sbjct: 268 SLDAVGSERAMTYTSRISSTQDVDWYQSISDYSLRQVALQASYKAFTDMQGMSL 321


>gi|262404533|ref|ZP_06081088.1| flagellar hook-associated protein FlgL [Vibrio sp. RC586]
 gi|262349565|gb|EEY98703.1| flagellar hook-associated protein FlgL [Vibrio sp. RC586]
          Length = 397

 Score = 53.6 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/404 (12%), Positives = 124/404 (30%), Gaps = 63/404 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q++  
Sbjct: 5   ISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLA----THYIQNVGQQEEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + L +  LV  RL   +  +S+ ++        ++ ++ G          A +L++  
Sbjct: 61  LRQYLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+  AN+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 SNFLNLANVQDESGNYIFAGTKPKNQPFFRDNQGNVSYAGDDYQRKMKISNSLEIPFNNP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-----SMNAQQMTDFIKQLED------- 202
            S            +    +    +   LE +        +     F+   +        
Sbjct: 181 GSKVFMEIPNPFGSYEPNYTLQEGSELLLERAVNLNPDDTSAYRVTFVDMPDGKNGYQLE 240

Query: 203 -----KFSDDEYWANNWSNAS-DHNIKYRIKDTEGIDVS---ANVNMRGIRDIMFVAVIG 253
                  S +         A  +  +K +I   + ID++           RD +  A   
Sbjct: 241 RNGSVVQSGEFDPKTGIQFAELNIQVKGQITKGDAIDLTPRDTYSVFDTFRDAIRYA--- 297

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
                 +++D +      +++         + + R  +G     ++ +    ++    + 
Sbjct: 298 ----EGSVSDASNTAKLHQIVEEFHTAFIHLNKTRTDIGARLNTLDIQEEQHEDFKISLA 353

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              S    ++   A  + +     +E S     K + L++ NY+
Sbjct: 354 KSKSTFEDLDYADAVIEFNENSRALEASQKAFGKTKDLTLFNYI 397


>gi|295697520|ref|YP_003590758.1| flagellar hook-associated protein 3 [Bacillus tusciae DSM 2912]
 gi|295413122|gb|ADG07614.1| flagellar hook-associated protein 3 [Bacillus tusciae DSM 2912]
          Length = 296

 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/332 (11%), Positives = 99/332 (29%), Gaps = 59/332 (17%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
              L ++  +G+  +        V   + ++ +  +  +   +  +    L  +   ++ 
Sbjct: 23  LSSLQDQAASGKRINRPADDPVGVGFAMRYKAQVAYYGQYQQNADMAKGWLDYTDTVMNQ 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
              +++      V         +     A  +    +  VT  N    G+Y+F+G  ++ 
Sbjct: 83  AGDVIKRARELAVEGASDTVPPDARQALASEVDQLLQQMVTIGNSQYNGKYIFNGQATTT 142

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
           KP                     +   N +S +      +  +    +   +     +F 
Sbjct: 143 KP---------------------YDTANPESSVTNGGQVLYDI-GDGVHLDVNVPGSRFF 180

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGA 265
                A+N                                    AV+       N  D A
Sbjct: 181 GSPTEADN----------------------------------VFAVLKQLRDGLNGNDTA 206

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
           +    +  L  +    S ++E RA +G     ++  +  L +    + + +SK+   +  
Sbjct: 207 K---IEDALGKIDSRYSKMLEVRADVGARSNRVDLAQNRLGDMVQNLTSLLSKTEDADMG 263

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                L +  N    S  +  ++   S++++L
Sbjct: 264 KLAIDLKSAENVHMASLAVGARVLMPSLVDFL 295


>gi|88858136|ref|ZP_01132778.1| flagellar hook-associated protein 3 [Pseudoalteromonas tunicata D2]
 gi|88819753|gb|EAR29566.1| flagellar hook-associated protein 3 [Pseudoalteromonas tunicata D2]
          Length = 519

 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 84/252 (33%), Gaps = 23/252 (9%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           I T++ ++R     +       +  EE+ +G+     SD  +       SI++ ++E + 
Sbjct: 3   IGTANFYQRSLASLQSRQVSLDRAQEELSSGKKVIRPSDDPVA----SNSIIKLKKELDV 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
            +  L + S   +    ++  L+SM  I+  +   L   + G  DN+        +   Y
Sbjct: 59  SSRYLDAQSTANRYNREAETSLTSMNNILLRLQESLSGAINGALDNDGLIAYREQIASRY 118

Query: 122 ESFVTFANM-TDEGQYLFSGINSSEKPLN-------GYFTKD-------SLAKKSFDQML 166
           E +    N     G Y+FSG  +  KP          Y           + +        
Sbjct: 119 EEYEGIVNQKNANGDYMFSGFQTRTKPYQSDSFGYFDYQGDSGQRQVLIAPSFDVAVTEP 178

Query: 167 QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI 226
                 N  S  +      ++ +  Q++        ++      AN +       +  + 
Sbjct: 179 GNSFASNVASKFSHYRPASAAASGAQVSLGFVTDGAEYRAPTAPANTYQIQFSGAVPPQA 238

Query: 227 KDTEGIDVSANV 238
              + +DVS   
Sbjct: 239 DTWQVVDVSLPA 250



 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 34/92 (36%)

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
           R  +   +L  V    + I   R+ +G    +I+ E              ++    ++ +
Sbjct: 428 RADVLGALLEEVTNAQTNIDNTRSQIGARMNSISNEGDAQLLFKEATKITLADLEEIDVY 487

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            A   L      ++ +     ++Q LS+ +Y+
Sbjct: 488 EAVTNLENSRVGLQAAQQAFARVQNLSLFDYI 519


>gi|149927805|ref|ZP_01916056.1| flagellar hook-associated protein 3 [Limnobacter sp. MED105]
 gi|149823427|gb|EDM82658.1| flagellar hook-associated protein 3 [Limnobacter sp. MED105]
          Length = 325

 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 62/214 (28%), Gaps = 17/214 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DY---GLQLGARVTSI 52
           M    IST+  F+       +   + VKL  ++ TGQ       D     + LGA+    
Sbjct: 1   MAIGRISTNQYFKLSTDRMSKQQTELVKLQGQLATGQRVLKPSDDPLAMSVALGAKAG-- 58

Query: 53  LEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPI 112
                    I     + + V  +L      L S   I+  +    +             I
Sbjct: 59  ------VKTIDSYQSNITYVNNQLGQMDVALQSASDIMVSIKEAFLQAGNAALSPADREI 112

Query: 113 NAGMLRDSYESFVTFAN-MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLE 171
            A  +    E     AN     G Y+FSG    ++P        +           G   
Sbjct: 113 IAQDIEGRMEELRGIANRTDANGYYMFSGTFQDQEPFQTPGGAITGTFLETSTAAAGEAV 172

Query: 172 ENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
              +  +A       S+  Q         ED F+
Sbjct: 173 VGREIQVASGRFVNLSITGQDAFVDPNTNEDAFA 206


>gi|295110885|emb|CBL27635.1| Flagellin and related hook-associated proteins [Synergistetes
           bacterium SGP1]
          Length = 1319

 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 53/148 (35%), Gaps = 5/148 (3%)

Query: 2   KTTGISTS-SIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           + T + +  ++   +    + +      L +++ T +      +  + ++  LE +    
Sbjct: 4   RATSVGSYKTLLSSLQGNYRNIQN----LQKQLATLKKYSNLSENPSAISRALELQSAIG 59

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
              +   +       L  ++  L  +    + +   ++   +     +   I A  +  +
Sbjct: 60  ANEDYKENGENAVALLKHAEGVLDQVLNAAKAIRTLVIQAGDAALSKSDREIIAKQIEAN 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPL 148
            ++ +   N    GQYLF G ++ E P 
Sbjct: 120 RQTILDALNTKVAGQYLFGGTSTGEAPF 147



 Score = 40.5 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 47/139 (33%), Gaps = 2/139 (1%)

Query: 219  DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQ 278
            D     R      +  + N +    R       +  +  +  +  G R  L++ ML  + 
Sbjct: 1182 DDPANTRKPQGIFVQNTTNRSGANERK-QNGYEMFGDV-TAAVRAGNRTGLSEVMLPRID 1239

Query: 279  QGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI 338
              +  ++   +  G  +         L  +N ++     +   V+      QL       
Sbjct: 1240 AFIDNVLSVLSSNGAMQNRYKANMDRLTTENTLLTETHDELATVDPAEIATQLMMANYVY 1299

Query: 339  EMSYMITTKLQKLSILNYL 357
            + +  +  +L + S+L+++
Sbjct: 1300 QSNLAVIAQLIQPSLLDFI 1318


>gi|207109301|ref|ZP_03243463.1| flagellar hook-associated protein FlgL [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 141

 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 3/141 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGI 141
            E  +  AN +  G++LF G+
Sbjct: 118 REHMMNVANTSIGGEFLFGGV 138


>gi|332140553|ref|YP_004426291.1| flagellar hook-associated protein FlgL [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550575|gb|AEA97293.1| flagellar hook-associated protein FlgL [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 404

 Score = 53.2 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 1/154 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ I+++          D     E++ +G+               L   +E + + + 
Sbjct: 3   ISTNQIYDQNIRSILNNQSDLANTQEQLASGKKLLKPSDDPVGAAKALRLTEELDSLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +N LVT  L   +  L+++   +       +    G   +      +  L+      +
Sbjct: 63  QRNNDLVTGSLELQETVLTNVTNSINRARTLAIQAGNGAYSSADRAAISSELKQIKLEIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLA 158
              N  D  G YL+SG  S ++      + +  A
Sbjct: 123 DLMNTKDANGNYLYSGYQSGKQAFEFEPSSNGNA 156


>gi|330445356|ref|ZP_08309008.1| flagellar hook-associated protein 3 [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489547|dbj|GAA03505.1| flagellar hook-associated protein 3 [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 411

 Score = 53.2 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 57/147 (38%), Gaps = 7/147 (4%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEW---EQEKNHI 62
           IST+S ++ +         +  + + ++ TG+  +     G    S +      Q+   I
Sbjct: 5   ISTASQYQSLTSNLMRKQGEVSESNNKLSTGKRVE---TAGDDPVSSVTIQNYRQQLTQI 61

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            +   S ++   RL   ++ ++ ++  +      ++ ++ G   +N        L    +
Sbjct: 62  DQYKSSITMANNRLGVMESSIAGVEDNLDATKQKVLRMINGAMASNDRTAFKDELISLRD 121

Query: 123 SFVTFANMTD-EGQYLFSGINSSEKPL 148
             +  AN  D  G Y+F+G     KP 
Sbjct: 122 GLLELANSRDESGSYVFAGDQMDTKPF 148



 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 43/99 (43%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
           K  +  A     + ++  +      + ++R+ +G   + +  ++    +    ++T  S 
Sbjct: 313 KPTSSAAAEATLQGVIDDIDSSFVHVSQRRSEVGTIMQQVERQQDQHLDFELTLNTAQSG 372

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A  +++  +  ++ S    +K ++LS+ NYL
Sbjct: 373 LEDLDYSKAIMEMNQQMMALQASQSAFSKTKQLSLFNYL 411


>gi|262273521|ref|ZP_06051335.1| flagellar hook-associated protein FlgL [Grimontia hollisae CIP
           101886]
 gi|262222499|gb|EEY73810.1| flagellar hook-associated protein FlgL [Grimontia hollisae CIP
           101886]
          Length = 307

 Score = 53.2 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 112/353 (31%), Gaps = 53/353 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S++ + E M    +       ++  EM + +              ++   +E+++IA+ 
Sbjct: 3   LSSAQLNEMMFTSIQTSTAGVNRVLTEMGSQKKMLAASDDPLGAVQVMMLNREQSNIAQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRDSYESF 124
             + + + K+L+ +++H+ +    +      +  +L     +       A  L    +  
Sbjct: 63  QKNITNLEKQLTLTESHIDASNNALLRAEELVASVLNASNSDKTGREAIASELEGILDQL 122

Query: 125 VTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           ++ AN  +  G Y+FSG  +    +     +D                            
Sbjct: 123 LSEANSQNPNGDYIFSGTKTDTPAV----ARDPDTGLYV--------------------- 157

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGI-DVSANVNMRG 242
                                          S A       +I   +   D+  N    G
Sbjct: 158 ---------------------FQGNQEQRMVSVAEST----QIPANQTAHDLYFNGADDG 192

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
                 +A +  +     +T  A      +  + +     G+ +    +G    +++   
Sbjct: 193 SDIFNTLASVIDDLRDPAVTGDALTASVSRAQTHISAVREGMGQVLTDVGAQRASMDRIA 252

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
              ++   + +  IS    ++   A  +L+T +  ++ + M  TK+Q LS+  
Sbjct: 253 GAHEDNALMNENLISDVEDLDYSEAILRLNTHMAALQATQMSYTKIQNLSLFK 305


>gi|309779454|ref|ZP_07674215.1| flagellar hook-associated protein 3 [Ralstonia sp. 5_7_47FAA]
 gi|308921695|gb|EFP67331.1| flagellar hook-associated protein 3 [Ralstonia sp. 5_7_47FAA]
          Length = 319

 Score = 53.2 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/353 (11%), Positives = 109/353 (30%), Gaps = 39/353 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S++  F   +   +    + + L +++ +G +        +    + + +Q ++   + 
Sbjct: 3   VSSAQFFAASSASMQNTQSNLLTLQQQIASGIALTSAGDNPSAFGQMAQLQQTQDANDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      RL++  + L+++   +Q     LV         ++       ++  Y+  +
Sbjct: 63  QSNRDTTDARLTSVSSALTNLVTTLQQGKQTLVGANTSLMTESQRVGVLAQVKQQYQQLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  G  LF G N +  P                        +     ++     
Sbjct: 123 STANQRDAAGVALFGGANGTTDPFTNTGGSVQYVGS----------GQPPVVQVSQNISM 172

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +S++   +   I                 S+AS+ N    +  T               
Sbjct: 173 PNSVSGDSVFVRIPN---------------SDASNPNANQSVFKT-------------YE 204

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
            ++          ++           +     +       ++ +  +G  +  +      
Sbjct: 205 KLITALSTPINAATQATDVANLQKAVQTAQGNLDNAYQVALQAQVTVGTQQAQLTTLNSS 264

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             N    +   ISK   V+  +A +Q S     ++ +    T +Q +S+  Y+
Sbjct: 265 GSNYGEQLKEQISKLQSVDYTSAISQFSQQQVSLQAAQKTFTAMQGMSLFQYI 317


>gi|256376484|ref|YP_003100144.1| flagellar hook-associated protein 3 [Actinosynnema mirum DSM 43827]
 gi|255920787|gb|ACU36298.1| flagellar hook-associated protein 3 [Actinosynnema mirum DSM 43827]
          Length = 292

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 103/302 (34%), Gaps = 16/302 (5%)

Query: 59  KNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLR 118
            + + ER  S  +++  L  +Q  +  +++ +          L   +D     ++A  LR
Sbjct: 3   ISRVTERSMSTGILSS-LQRNQNKMDQLREAISSGKQ-----LTKPSDGPTDTVSAMQLR 56

Query: 119 DSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
                   ++    +GQ       +    L+        A+    Q      +++ +++ 
Sbjct: 57  TEIAERGAYSRSAVDGQARLGAAET---ALSSTSDLLLRARDLVLQGKSAQSQDSREAIA 113

Query: 179 AGQHLEVSSMNAQQMTDFIKQLE--DKFSDDEYWANNWSN-ASDHNIKYRIKDTEGIDVS 235
           A      +SM     T ++ +       +  + +A++ S    D  +  RI +   + V 
Sbjct: 114 AEIDAIRTSMIGLANTTYLDRPVFGGTTAGGQAFASDGSYLGDDGQVMRRIANGTQVRVD 173

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE 295
              +  G        V+ +   +        +    +    +  G+  +      +G   
Sbjct: 174 VPADTFGTGSNQVFKVLESIAGNMRSNPAGLSADLDR----LDSGIKTVNTAVTGIGTRY 229

Query: 296 KNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
             ++      Q +   +   +S+   V+   A  +L T     E S   T ++ + S+L+
Sbjct: 230 GQLSAADDAGQAQVVTLSARLSQIEDVDVAAAVVELQTQTVAYEASLAATARIVQPSLLD 289

Query: 356 YL 357
           +L
Sbjct: 290 FL 291



 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 1/150 (0%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  + ++  S+   +    +       +L E + +G+             S ++   E  
Sbjct: 1   MNISRVTERSMSTGILSSLQRNQNKMDQLREAISSGKQLTKPSDGPTDTVSAMQLRTEIA 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                  S      RL  ++  LSS   ++      LV+  +     +     A  +   
Sbjct: 61  ERGAYSRSAVDGQARLGAAETALSSTSDLLLRAR-DLVLQGKSAQSQDSREAIAAEIDAI 119

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
             S +  AN T   + +F G  +  +    
Sbjct: 120 RTSMIGLANTTYLDRPVFGGTTAGGQAFAS 149


>gi|157961178|ref|YP_001501212.1| flagellar hook-associated protein FlgL [Shewanella pealeana ATCC
           700345]
 gi|157846178|gb|ABV86677.1| flagellar hook-associated protein 3 [Shewanella pealeana ATCC
           700345]
          Length = 400

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 55/398 (13%), Positives = 131/398 (32%), Gaps = 46/398 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ +F + +    +    + ++ E++ +G+  +           I    Q+     + 
Sbjct: 3   ISTAQMFHQTSSNVLKGQSATSQILEQLASGKKVNTAGDDPIAAAGIDNLNQQSALTNQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           L +    + RL+ S++ + S + ++Q M   ++  + G  ++      A  +R S E  +
Sbjct: 63  LKNIDYASNRLAVSESKIGSAETLIQSMHEGMLRSVNGTLNDADRQAIADEMRSSLEELM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKD---SLAKKSFDQMLQGFLEENSKSLLAGQ 181
           + AN  D  G  LF+G  +   P     + +   S      D ++   +   S       
Sbjct: 123 SIANSKDESGNSLFAGFATDTTPFAFDNSGNVVYSGDSGVRDSIVASGITVGSNIAGDSI 182

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEY----------------WANNWSNASDHNIKYR 225
            +  ++       ++       F+ +                  + +N +   D N+   
Sbjct: 183 FMNAANAIGDYSVNYSASQTGSFTVESAKVTDASLPVVGDYTFDFVDNGAGGLDLNVTDS 242

Query: 226 IKDTEGI---DVSANVNMRGIRDIMFVAVIGTEF-----------------------LSK 259
               + I   D S  V + GI        +  +                           
Sbjct: 243 SGGVDTIPNFDPSQPVTVDGIELQFKGTPVAGDTFSMSPETQSNIFDTLNSAISLLEDGA 302

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
            L          ++L+ V  G   +   R+V G S K++       + +  +  + +S  
Sbjct: 303 KLNSPQGQSEMAQLLNNVTSGQEQMAMSRSVAGNSLKSLESYTDTHKEEQLVNQSALSLL 362

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   A  +       +     + +K+   S+ +Y+
Sbjct: 363 EDLDYAEAITEFEKQQLALNAVSSVFSKVGSTSLFDYI 400


>gi|254785379|ref|YP_003072808.1| flagellar hook-associated protein 3 [Teredinibacter turnerae T7901]
 gi|237687446|gb|ACR14710.1| flagellar hook-associated protein 3 [Teredinibacter turnerae T7901]
          Length = 533

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 10/156 (6%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+  IF   N    + +++ V   E++ TG      +D  +      T I++   +  +
Sbjct: 3   ISSLQIFNIANKSMSDASREMVHTQEQLSTGARVLTPADDPVA----STKIMQLTTDLAN 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT-DNNKFPINAGMLRDS 120
           I +   +  L    L   ++ ++S+  ++Q +    V      T   +++   A  +   
Sbjct: 59  IDQYRKNIDLAENNLVAEESAMTSVGNLLQRIQELAVQAGNTATLSESEYDALAAEVDTR 118

Query: 121 YESFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKD 155
            +  +   N     G Y+F G  S ++P +G     
Sbjct: 119 LDELLNLLNSQNANGDYIFGGYKSGQEPFSGTAASG 154



 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 68/214 (31%), Gaps = 4/214 (1%)

Query: 140 GINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQ 199
           G  +    L+G  T  +      +    G  +  ++  +          +   +T  +  
Sbjct: 320 GGRTETLTLDGLVTNAADFVALMNSTGNGNAQILAELGVTVDATGFKVASGAPIT--LGG 377

Query: 200 LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSK 259
                +       + S+ S   +  +  D   ID S       +  +   +     F   
Sbjct: 378 GSGNLNAVTGLTVDGSSTSADGVPGKPGDRVFIDSSNK--QDVLTTLARFSEAMKHFDGS 435

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
           + +  + + +    L  ++   + I++  A LG     +   R    +   +    + + 
Sbjct: 436 DESRESLDKMVGVTLDNLKNAQTSILDVTAKLGARYNTLESTRDLHLDTELVTRDVLGEL 495

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++   A  +LS     ++ +     ++ +L++
Sbjct: 496 RDLDYAEATTRLSAQSMILQAAQSTFIRVSQLNL 529


>gi|304317610|ref|YP_003852755.1| flagellar hook-associated protein 3 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779112|gb|ADL69671.1| flagellar hook-associated protein 3 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 295

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 85/309 (27%), Gaps = 60/309 (19%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
           V + L+ + E         +       LS +   L  +  ++Q      V    G    +
Sbjct: 46  VANTLKIKTEIARNDAYTKNTDDAKSWLSLTDTALGQIGDLLQSARDLAVQGSNGTLTQS 105

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQG 168
                A  +    +  +   N    G+Y+F+G  ++ KP +         + + D     
Sbjct: 106 DMQNLAAQVDQLKQQIIQVGNTQYNGRYIFAGYKTNRKPFSD------TNRYAGDDGAIQ 159

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
           F       + AG +    ++   ++ D         +  +  +N   +  +  +   I D
Sbjct: 160 F------EIGAGGNTIQVNVTGDKVFDVTSGTSQLLNVMDNLSNALKSGDNQTVSNIIGD 213

Query: 229 TEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
                                                           +   L  ++  R
Sbjct: 214 ------------------------------------------------IDNQLQNVLAIR 225

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           A  G     I+     L + N      +SK+   +       L    N    S      +
Sbjct: 226 ADAGAKANRIDLTANRLSDDNYNFTALLSKNQDADIAQVITNLKMDENVYRASLASGAMI 285

Query: 349 QKLSILNYL 357
            + S++++L
Sbjct: 286 IQPSLVDFL 294


>gi|82777305|ref|YP_403654.1| flagellar hook-associated protein FlgL [Shigella dysenteriae Sd197]
 gi|309788153|ref|ZP_07682759.1| flagellar hook-associated protein 3 [Shigella dysenteriae 1617]
 gi|81241453|gb|ABB62163.1| hook-filament junction protein [Shigella dysenteriae Sd197]
 gi|308924005|gb|EFP69506.1| flagellar hook-associated protein 3 [Shigella dysenteriae 1617]
          Length = 298

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 95/322 (29%), Gaps = 48/322 (14%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            AN TD  G+Y+F+G  +   P +     Y       K+  D      +           
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEANGDYVGGTESIKQQVDASRSMVIGH--------- 174

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     ++ D I        D      N     D  I                   
Sbjct: 175 -------TGDKIFDSITSNAVAEPDGSASETNLFAMLDSAI------------------- 208

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                   A + T                 K    ++  L+ ++  RA LG     +   
Sbjct: 209 --------AALKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESL 260

Query: 302 RVFLQNKNNIIDTYISKSIGVE 323
                ++       +S  + V+
Sbjct: 261 DSLASDRALGQTQQMSDLVDVD 282


>gi|297531375|ref|YP_003672650.1| flagellar hook-associated protein 3 [Geobacillus sp. C56-T3]
 gi|297254627|gb|ADI28073.1| flagellar hook-associated protein 3 [Geobacillus sp. C56-T3]
          Length = 297

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 95/352 (26%), Gaps = 58/352 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ S +             +  K   ++ TG+               + +      + + 
Sbjct: 3   ITQSMLANNTLKQITRSYANLDKYQTQLSTGKKITRPSDDPVVAMKGIAYRSNLAEVEQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S     +  S + L    + +Q +    V       +  +    A  +R   E  V
Sbjct: 63  KRNFSEAYNWVENSDSALDKATQALQRIRELTVQASNDTYEETQRQAIAKEVRQLTEHLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
           T AN     +Y+                              G    +    +       
Sbjct: 123 TIANTKVGDKYI----------------------------FNGAKTTDPPVTVNPDGTIS 154

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
            S N+QQ+                   N   A    I   I  +     +         D
Sbjct: 155 VSTNSQQV-------------------NIELAKGIYIPVNIPPS----TAFGAGSGLFSD 191

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
           +     +     + + T         K    +   L+ ++  RA LG     I      +
Sbjct: 192 LQN---LAASLENPSTTGDDVTGYLDK----LDSHLTNLLGVRAELGARMNRIELMEDRI 244

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++  I +  +S +  V+       L T  +    +  +  ++ + +++++L
Sbjct: 245 DSQQVIAEKMLSDNEDVDLEKVITDLKTQESVHRAALAVGARVIQPTLVDFL 296


>gi|157363534|ref|YP_001470301.1| flagellar hook-associated protein 3 [Thermotoga lettingae TMO]
 gi|157314138|gb|ABV33237.1| flagellar hook-associated protein 3 [Thermotoga lettingae TMO]
          Length = 296

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 107/352 (30%), Gaps = 59/352 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   I ER+    ++      K H+++ +G    Y        T     +     + + 
Sbjct: 3   ITNKMIGERVLTNIQKNINSIAKFHDQLSSGLKVRYPSDDAVTATRTSNLKSRLRELEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L++    L  +  I Q +   +     G   + +    +  ++   E  +
Sbjct: 63  ERNIDHAENILNSYDTSLQEISSIYQRLRELITQGANGILTDEQRKAISQEVKQIKEQLI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             AN      Y+F+G  S++ P+     +D     + D     F+      +  G   + 
Sbjct: 123 QIANTQIGTDYIFAGYASNKPPV----DQDGNIVLNPDSAKSRFVNALGYRVEYGLSAKD 178

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                  M+ F                                 + ID++ N        
Sbjct: 179 VFQTDSGMSVF---------------------------------QLIDITINA------- 198

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
                        ++        ++   +  ++  +S  +   A +G  ++ +      +
Sbjct: 199 ------------LESNDQETLGGISLMSMDYLEDTVSKGL---AKIGADQRMVEMISTRI 243

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++ N  +  YISK    +      +LST    +  +      +   ++++++
Sbjct: 244 EDLNTFMTEYISKETDADITEVLTKLSTHQAALTAALKSAANVLTSTLVDFI 295


>gi|170751913|ref|YP_001758173.1| hypothetical protein Mrad2831_5545 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170658435|gb|ACB27490.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 532

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 49/139 (35%), Gaps = 7/139 (5%)

Query: 225 RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDG----ARNVLTKKMLSTVQQG 280
           ++  T  +   A  N   ++++    +    F      D         +  K  + +   
Sbjct: 394 QVSATGSVGTGARANDPTVQNV-LAGLATMAFGLPTTNDANTYNTYQTVATKAGNLLSSA 452

Query: 281 --LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI 338
                + +    L I+   ++      +   N +   +     +       +L  + N++
Sbjct: 453 NQTPSVQDTVTQLTIASTRLSNAGTTNKALQNTVQNTLDGIEQISPEEVITKLLDVQNRL 512

Query: 339 EMSYMITTKLQKLSILNYL 357
           + SY +T  L KLS++NY+
Sbjct: 513 QASYQVTATLSKLSLVNYI 531



 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 2/148 (1%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
           T   + S +  R     + L      L  ++ +GQ S     LG+  ++ L  +   + +
Sbjct: 5   TPFAAGSYLTTRNASQLQALKGQLNDLTNQLSSGQVSQTYGGLGSGRSTALSAQATLSAL 64

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
                  +    R + +   L+ +  +       L   L+    N+           + +
Sbjct: 65  TGYAAGITAAQTRTNLAVTSLTQVATLGTSTGTMLQNGLQSVAANSVSG--RSTALANLQ 122

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLNG 150
           + +   N +  G YLF G N++ +P+  
Sbjct: 123 TALDTLNESAAGNYLFGGSNTTTQPVVD 150


>gi|57241926|ref|ZP_00369866.1| flagellin B homolog (fla), putative [Campylobacter upsaliensis
           RM3195]
 gi|57017118|gb|EAL53899.1| flagellin B homolog (fla), putative [Campylobacter upsaliensis
           RM3195]
          Length = 751

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+SI   M+  +        KL  ++  G       +  +        E E   + +   
Sbjct: 10  TNSIQNTMSGASA-----LNKLSVQLSLGMKIQDSYEDASIYIDNTRLEYELETLKQIKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           + S   +  S S   L  M K++++    +                A  L    E  V  
Sbjct: 65  ATSSAKEMTSNSMKALQDMVKLLENFKVKVTQAASDSNSQTSREAIAKELEKIKEQIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSINGQYLFAGAQLNHKPFDS 147



 Score = 42.8 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D+M  AV+     +    D  RN   +  L  +      I +    +G    NI+     
Sbjct: 639 DLMIEAVLSGNMRANADGDNPRNTGMQGALERLDHLSDHINKLNTTMGAYHNNIDNVNTR 698

Query: 305 ---LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI--EMSYMITTKLQKLSILNYL 357
              L      + T ++     +   A   ++ +  ++  + S   TT + +LS+LNY+
Sbjct: 699 VTFLGVNVQTLKTKVN-----DADYAETLMNLMQTQLAYQASMKATTTISQLSLLNYM 751


>gi|239828339|ref|YP_002950963.1| flagellar hook-associated protein FlgL [Geobacillus sp. WCH70]
 gi|239808632|gb|ACS25697.1| flagellar hook-associated protein 3 [Geobacillus sp. WCH70]
          Length = 301

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/356 (10%), Positives = 106/356 (29%), Gaps = 62/356 (17%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ S +   M         +  K  E++ TG+  +            + +      + + 
Sbjct: 3   VTQSMLANNMLKHLSTSYANLGKYQEQLSTGKKINRPSDDPVVAMKGMAYRTNLTEVEQL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S     +  S A L    + +Q +   +V       +  +    +  ++   E  V
Sbjct: 63  KRNFSEAYNWIENSDAALDKATQALQRIRELVVQAGNDTYEATQRQAISQEIKQLTEHLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
           T AN     +Y+F+G N+ + P+                             + G  +  
Sbjct: 123 TIANSKVGDKYIFNGTNTLQPPVQ----------------------------MNGTSITT 154

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           S+   +   +  K +    +                    +  TE      + + +G   
Sbjct: 155 SNNTEEVKIELAKGIYIAVN--------------------VNPTEV--FHYDASQKGKGL 192

Query: 246 IMFVAVIGTEFLSKN-LTDGARNVL--TKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
              +  +  +    N         L    + +S +    + +  +   + + E+ I    
Sbjct: 193 FSDLQSLANDLDDPNKTGKDINEYLGYIDQHISKLLSARAELGARMNRVELMEERI---- 248

Query: 303 VFLQNKNNIIDTY-ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                +  II    +S +  V+       L    +    +  +  ++ + +++++L
Sbjct: 249 ----GQQEIIAQKMLSDNEDVDMERVITDLKVQESVHRAALAVGARIIQPTLVDFL 300


>gi|88799030|ref|ZP_01114611.1| Flagellin and related hook-associated protein [Reinekea sp. MED297]
 gi|88778257|gb|EAR09451.1| Flagellin and related hook-associated protein [Reinekea sp. MED297]
          Length = 418

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 2/137 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST   F+R       L  +  K  E++ +G+              +L+ +QE   + + 
Sbjct: 5   VSTYWTFQRPVNDMLRLQSNLNKTSEQIASGKKMLSPADDPVGAARVLQLDQEIALLNQY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVG-PLVILLEGKTDNNKFPINAGMLRDSYESF 124
             + +L+  RL   +  L  +  ++Q +    +          ++    A  L +  +  
Sbjct: 65  ERNITLLDSRLEQEEGVLDGVTSVLQRVRELTVQAGNAAVYSESERQAIALELDERLKEL 124

Query: 125 VTFANMTDE-GQYLFSG 140
              AN  D  G+YLFSG
Sbjct: 125 FDLANSRDGSGEYLFSG 141


>gi|257457498|ref|ZP_05622666.1| flagellar hook-associated protein 3 [Treponema vincentii ATCC
           35580]
 gi|257445121|gb|EEV20196.1| flagellar hook-associated protein 3 [Treponema vincentii ATCC
           35580]
          Length = 414

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/410 (13%), Positives = 116/410 (28%), Gaps = 58/410 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++      +   +       K++ ++ T +               + ++     +   
Sbjct: 4   ISSNMQHSDSSYSVRRQESRLHKVNSQLSTQRRIQQLRDDPIAAGHSVRYKSLLTRLDRF 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +  +   ++A + S   I+Q +    V    G   ++     A  + +     V
Sbjct: 64  EKNAKTLNDQYKVAEAPMQSALSIMQRLRELSVAGATGTYTDSDLKKMAPEVDELLYELV 123

Query: 126 TFANM-TDEGQYLFSGINSSEKP---------------LNGYFTKDSLAKKSFDQMLQGF 169
             AN  + +G  LF+G  S  +P               +       S+  K  +     F
Sbjct: 124 QTANSFSADGTRLFAGTKSFTEPFEVVMGDIDGAGSAVITNVRYNGSIDTKQVESDELSF 183

Query: 170 LEENSKSLLAGQHLEVSSMNAQQMTDFI---------KQLEDKFSDDEYWANNWSNASDH 220
           ++ N            +  +A    +FI           +       +      S  +  
Sbjct: 184 MDANQAGNRVFWAERQTLFSATDARNFIVQQDSAIEVDGVTIPLIAGDNVYAIMSKINSS 243

Query: 221 NIKYRIKDTEGIDV----SANVNMRGIRDIMFVAVIGTEFLSK-------NLTDGAR--- 266
               +       +     + +     +RD     V+ +  L K       NL D  R   
Sbjct: 244 GAAVKASLDPVTNGMNIETTDARQLWLRDAGEGTVLSSLGLVKPQQRPPYNLADSVRVSG 303

Query: 267 -------------------NVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN 307
                                L  K+L +V   +  +  + A  G   +        L  
Sbjct: 304 GSLFDAVIAMRNAMYAGDHESLGGKVLGSVDGAIENLTARLAENGSRYERAEAALARLNM 363

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   +    S+   ++   A + L       + S      L K ++LNYL
Sbjct: 364 QIPNVTGAESREADLDLTQAISDLKMYEYTHQASLSTVGNLYKNTLLNYL 413


>gi|119477946|ref|ZP_01618046.1| Flagellin and related hook-associated protein [marine gamma
           proteobacterium HTCC2143]
 gi|119448859|gb|EAW30101.1| Flagellin and related hook-associated protein [marine gamma
           proteobacterium HTCC2143]
          Length = 424

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 1/131 (0%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            + L + + +   ++ +G+              I++  QE + + + + +   V  RL+ 
Sbjct: 18  MQRLQQQTFETQAQIASGRRILAPSDDPVASAKIIQVNQELSRLDQYIDNADSVENRLNV 77

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYL 137
           ++  +  +  ++  +    +         +   + A  L    E  ++ AN     G+Y+
Sbjct: 78  AETQIEQVTTLLVRVRELTIQADALSVTQSDRQLIAKELDVRLEELLSIANTRDVNGEYI 137

Query: 138 FSGINSSEKPL 148
           F+G   +EKP 
Sbjct: 138 FAGYQGAEKPF 148



 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
           I  ++          +   A + L  + L  +      + E ++ +G  +  + +    L
Sbjct: 312 IAKISEGMKSLGDSAVDQSAFDDLVAETLENLSAAEINMSEVKSEIGARQNTV-DSVRSL 370

Query: 306 QNKNNIIDTY-ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  +I+   +S+   ++   A ++LS     +E S     ++  LS+ N+L
Sbjct: 371 HQQIELINNKVLSEIRDLDYAEALSRLSIETFTLEASQQSFVRISSLSLFNFL 423


>gi|255322352|ref|ZP_05363498.1| bacterial flagellin domain protein [Campylobacter showae RM3277]
 gi|255300725|gb|EET79996.1| bacterial flagellin domain protein [Campylobacter showae RM3277]
          Length = 748

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 4/165 (2%)

Query: 24  KDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83
           K   KL+ ++ +G       +  +     +  + E   + +   + S        +   L
Sbjct: 21  KALYKLNTQISSGLKIQNSFEDSSVYNDGMRLDYEVATLEQVQTATSKAQHFSKNTDKAL 80

Query: 84  SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS 143
              ++ ++     LV               A  L+      V  AN +  GQ+LF+G   
Sbjct: 81  GEFKQQLETFKTKLVQGANEIHSQTSREAIANDLQGIKNHLVNIANTSINGQFLFAGSAI 140

Query: 144 SEKPLNG----YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + KP+NG    YF      K      +     +N   L  G+  +
Sbjct: 141 NTKPINGDTNEYFGNAQTMKAVGGAQVNLTYNQNGYELFLGKDGD 185


>gi|253990120|ref|YP_003041476.1| flagellar hook-associated protein FlgL [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781570|emb|CAQ84733.1| flagellar hook-associated protein 3 (hap3) (hook-filament junctio
           protein) [Photorhabdus asymbiotica]
          Length = 321

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/349 (14%), Positives = 124/349 (35%), Gaps = 36/349 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ ++++  +         ++   ++ +GQ            +  +   Q ++   + 
Sbjct: 3   VSTNVLYDQKMVSITTAQSKWMQQGAQLSSGQKVINPSDDPMAASQGVMVAQAESQNQQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + + S     +S   + +S +  +VQ++   LV  + G   +      A  L    E  V
Sbjct: 63  MTARSFAKNSMSMQLSVVSKVVGVVQNVHESLVATVNGVLSDEDRNSLAIQLEGFKEQLV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N TD  G+Y+F+G  +  KP        +++ +   Q L   ++ N   ++     +
Sbjct: 123 NLGNTTDGNGRYIFAGYKTDVKPF-DESKSGAVSYQGGYQELTQKVDSNRAMIIGHTGEQ 181

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V          F+    +   + +       N S+ ++   I                  
Sbjct: 182 V----------FLSSTSNPVKEPDG------NPSESDVFKVIDMA--------------- 210

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
             +       E   +   D A   L  K     +  L+ +    +VLG+  + I++    
Sbjct: 211 --IKSLKTPLEGADQKTRDDAVE-LLNKANRGARNALNNVSSVESVLGLQLREIDDLNSL 267

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
              ++    + +S+ + VE ++A +        ++ SY     ++ +S+
Sbjct: 268 GAERSLANKSRLSQLVDVEWNSAISNYYQQQAVLQASYKTFVDMKGMSM 316


>gi|153951331|ref|YP_001398131.1| flagellar hook-associated protein FlgL [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938777|gb|ABS43518.1| flagellin family protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 750

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 38.5 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%)

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D M  AV+     +   +   RN   +  L  +      + +    +G     I+     
Sbjct: 638 DSMIDAVLKGNMRADGNSADPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIDGVNTR 697

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   +  + +  S  I V+   A   L  +    + S   +T + +LS+LNY+
Sbjct: 698 VNFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQLSLLNYM 750


>gi|261856353|ref|YP_003263636.1| flagellar hook-associated protein 3 [Halothiobacillus neapolitanus
           c2]
 gi|261836822|gb|ACX96589.1| flagellar hook-associated protein 3 [Halothiobacillus neapolitanus
           c2]
          Length = 313

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 114/353 (32%), Gaps = 44/353 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS +F +     ++     ++  +E+ TG       Q     ++  +     +   + 
Sbjct: 3   VSTSMVFAQGLSNLQQQQSAMLQSQQEIATGVKLTNPAQDPVAFSTASDLSVLNSKQNQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    T ++   ++ L S+  ++Q +    +       +          L    ++  
Sbjct: 63  STNIDNATGKIQVQESTLGSITTMLQSVRDVAIQANNAAQNGMSLSALTDQLDQLQKALA 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N TDE G+YLFSG  + EKP              +D   Q     +S S        
Sbjct: 123 GQMNATDERGEYLFSGTVAREKP--------------YDASGQLNPALDSTSPSFQNVTS 168

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V    + Q +  I Q   +       A    NAS   I   I   +    +   N     
Sbjct: 169 VKLAISDQQSVAINQPAGQIFQLSSSATTGGNAS---ILQVIDQLKTAITTQPAN----- 220

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                   + +     +   ++ + + R  +G +   ++  +  
Sbjct: 221 ---------------------LQTIYQNAQKDIDAVMNQVTDARGSMGNALNTLSTAKND 259

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              +N +    +S     +  +A  +L+     ++ +     K+Q LS+ NY+
Sbjct: 260 NAAQNVLTQQTLSGLRDTDVASAITKLNQSYLNLQATQQSMVKIQSLSLFNYI 312


>gi|315932630|gb|EFV11561.1| flagellar hook-associated protein FlgL [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 749

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 42.8 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 62/171 (36%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        ++   S  +  N  +   ++  ID     N+  I+D+  
Sbjct: 582 SGTNIEISLSDSQSGHFPQPPFSTTSSVTNGPNFSFSANNSLVID---EPNVDIIKDLDS 638

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      I +    +G     I +      
Sbjct: 639 MIDAVLKGNMRADSESEDPRNTGMQGALERLDHLADHISKLNTTMGAYHNTIEDVNTRST 698

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  + +  S  I V+   A   L  +    + S   +T + +LS+LNY+
Sbjct: 699 FLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQLSLLNYM 749


>gi|157415144|ref|YP_001482400.1| flagellar hook-associated protein FlgL [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386108|gb|ABV52423.1| putative flagellin [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747787|gb|ADN91057.1| Flagellin family protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 749

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 42.8 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 62/171 (36%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        ++   S  +  N  +   ++  ID     N+  I+D+  
Sbjct: 582 SGTNIEISLSDSQSGHFPQPPFSTTSSVTNGPNFSFSANNSLVID---EPNVDIIKDLDS 638

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      I +    +G     I +      
Sbjct: 639 MIDAVLKGNMRADSESEDPRNTGMQGALERLDHLADHISKLNTTMGAYHNTIEDVNTRST 698

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  + +  S  I V+   A   L  +    + S   +T + +LS+LNY+
Sbjct: 699 FLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQLSLLNYM 749


>gi|90418259|ref|ZP_01226171.1| putative flagellin protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90337931|gb|EAS51582.1| putative flagellin protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 343

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 121/352 (34%), Gaps = 21/352 (5%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T++           +N +  +    + TG          A  +       +   + 
Sbjct: 2   TSINTNTSAMTALQSLSMINSNLDQTQNRISTGYRVGAASDNAAYWSIATTMRSDNKALG 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+   +++   +V ++   LV   E   D NK       L++   S
Sbjct: 62  AVEDALGLGQAKVDTAYTGMNAAIDVVDEIKVKLVAAKEPGVDRNKIQSEIAELQNQLSS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             T A+ + E    F+ +  + K +   F + S    S   +          + L     
Sbjct: 122 IATSASFSGENWLSFNDVEGTSKSVVASFNRSSAGAVSVGTIDID------TAGLKLFGD 175

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             S++ A    + I  +    +       + S   D      I +  G+D+S     +  
Sbjct: 176 NSSAVPATLYKNGILDIRTLGTTILDNDGDVSTLGDQL----ILNVSGLDISTTALNQAK 231

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            +      +  +    ++ D     +  KM++ V+  L  +    + LG ++  ++ +  
Sbjct: 232 VNAATGEAVAGQPNYLSVDD-----VLSKMITNVETALGKMTTAASNLGAAKSRMDIQSE 286

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+ N  + I+  +   +  +      +L  L  + ++       +Q LSI N
Sbjct: 287 FVSNLRDSIEKGVGTLVDADMTEESTRLKALQTQQQLG------VQALSIAN 332


>gi|315927562|gb|EFV06895.1| bacterial flagellin family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 659

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147


>gi|313903611|ref|ZP_07837001.1| flagellar hook-associated protein 3 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466164|gb|EFR61688.1| flagellar hook-associated protein 3 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 295

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 37/140 (26%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            +   +       ++ +G+               L        +     +       L  
Sbjct: 16  LRRAQQRLSTFQNQLASGKRVQRPSDDPVATVDSLRLRARLAEVERLRANAQDARDWLEM 75

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           + + L    +I+Q      V    G   ++        ++   +  +  AN T    YLF
Sbjct: 76  TDSALDRATQILQRARELAVRAASGTLPDSSLQAIQAEVQQLQDHLLEVANSTLGDSYLF 135

Query: 139 SGINSSEKPLNGYFTKDSLA 158
            G  + + P        S  
Sbjct: 136 GGFGTQQPPFVADPASPSGV 155



 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/206 (10%), Positives = 66/206 (32%), Gaps = 6/206 (2%)

Query: 153 TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN 212
              + +    D  LQ    E  +       +  S++    +       +  F  D    +
Sbjct: 94  AVRAASGTLPDSSLQAIQAEVQQLQDHLLEVANSTLGDSYLFGGFGTQQPPFVADPASPS 153

Query: 213 NWS-NASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTK 271
             +    +  I+  +     + ++   +         ++ +     +++L       ++ 
Sbjct: 154 GVTYQGINGPIQREVAPGTTLTINVPGDAAFDPAFAALSGLQVALQNRDL-----QAVSA 208

Query: 272 KMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQL 331
             ++ + Q L G++  RA +G     I      +       +  +S     +      +L
Sbjct: 209 TGIAALDQALDGLLRFRAEVGAKVNRIELGLYRMDEIRVDTEQLLSGVEDADIAETAMRL 268

Query: 332 STLINKIEMSYMITTKLQKLSILNYL 357
           S        + M   ++ + +++++L
Sbjct: 269 SVSQAAYRAALMAGARIVQPTLMDFL 294


>gi|160939639|ref|ZP_02086987.1| hypothetical protein CLOBOL_04531 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437430|gb|EDP15194.1| hypothetical protein CLOBOL_04531 [Clostridium bolteae ATCC
           BAA-613]
          Length = 327

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 113/353 (32%), Gaps = 30/353 (8%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +    N   +    D    + ++ + +  ++  +  A  +       +     E 
Sbjct: 3   ITENMMTSTYNRNLQRNISDLASSNLKLSSKRQYNHVSEDPATASKAFAIRDQIARSEEH 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           +         L T+ +++ ++  I++ +         G +  +     A  L    E  +
Sbjct: 63  ISVVKNARGELDTADSNIVTLNSILETVYEKATKA-GGASSQDSMDAIAEELGGLKEEIL 121

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N     ++LFSG ++SE P                         +    L      V
Sbjct: 122 QTMNAKYGDKFLFSGSSNSEAPFT----------------------VDGDGNLLFNGKPV 159

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI-R 244
            + +      +  + +  + D   +    S  +      +I  +    +    +  G+  
Sbjct: 160 DAYDKNDPDTYFDENKPVYLD-IGFGTYASGTNTAKTGIKISTSGVDVLGYGKDENGLPN 218

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           ++  +     E L     +GA + L++     +++  S I    + LG  EK ++     
Sbjct: 219 NLYSLIGKVEEQLRGGDKEGAMDTLSQ-----LKKKQSNISIATSELGTREKLLDRTEDR 273

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           L+     +    +    V+  T      +      ++  + + +   SI +++
Sbjct: 274 LETGLINLQKSQTDLESVKIETEAINNKSCETAWMITLQLGSSIIPPSIFDFM 326


>gi|90021848|ref|YP_527675.1| flagellin-like protein [Saccharophagus degradans 2-40]
 gi|89951448|gb|ABD81463.1| flagellin-like protein [Saccharophagus degradans 2-40]
          Length = 532

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 2/189 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS+  IF   N    + N+  VK  E++ TG+            T I++  +E  +I + 
Sbjct: 3   ISSLQIFNIANSGMADANQAMVKTQEQLSTGKRVSTPSDDPVASTKIIQLTEELANINQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT-DNNKFPINAGMLRDSYESF 124
             ++ L    +   ++ L ++  ++  M    V      T    ++   A  +    E  
Sbjct: 63  GINSDLAENSIVLQESALEAINNLIVRMQELAVQAGNNATLGPTEYKALAAEVDSRLEEL 122

Query: 125 VTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
            +  N     G Y+F G  S+ +P +G  +          Q           +       
Sbjct: 123 QSLLNTKGPGGDYIFGGYRSTTEPFSGTASTGFSYNGDEGQKFVKIANNTHIAASDSGKK 182

Query: 184 EVSSMNAQQ 192
               + + +
Sbjct: 183 IFVDIPSAE 191



 Score = 39.3 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 54/171 (31%), Gaps = 2/171 (1%)

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD--TEGIDVSANVNMRG 242
                   M   ++      S +   A   ++A+       +     + I + A      
Sbjct: 358 AVDATGFNMPAGLQITLSNGSANTNAALGVTSATQSVSSGGVTAVAGDRIFIEATNKQDV 417

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
           +  +  ++     +        +   +    L  +    + I    + LG     I+  R
Sbjct: 418 LTTLAQMSESMKTYEGGTEDRRSIEKVIASTLKNLSNAQTSISNVTSELGARYNTIDSTR 477

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
               +   +I+ +++    V+   A  +LS     ++ +     ++ +L++
Sbjct: 478 SLHLDSEVVINKFLADLRDVDYAEAATRLSVETLVLQAAQSSFVRVSQLTL 528


>gi|71278519|ref|YP_268229.1| flagellar hook-associated protein FlgL [Colwellia psychrerythraea
           34H]
 gi|71144259|gb|AAZ24732.1| flagellar hook-associated protein FlgL [Colwellia psychrerythraea
           34H]
          Length = 406

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/405 (13%), Positives = 124/405 (30%), Gaps = 54/405 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS  + +  +L  + + D     E + +G+             ++  +  +   I + 
Sbjct: 3   VSTSQFYLQSALLMNQKSADVNNQMEHLSSGKRVLTAKDDAVSYGTLSGFNDDLASIEKY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++     S  +   +  + ++      +++   G+  N      A  +R   +  +
Sbjct: 63  KRNITMAENHNSMQEVIFADAETLLDKFKQDMLLANNGRMSNEDLQSIADQMRHGLDQLI 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLN-------GYFTK-------------------DSLA 158
              N  DE G Y+FSG  + +KP +        Y                         A
Sbjct: 123 DLGNSQDEKGDYIFSGFQTQQKPFSQQVDGSVDYNGDKGVNELQVAKNIQIPTNQTGDAA 182

Query: 159 KKSFDQMLQGFLEENSKSLLAGQHLEVSSMNA-----------------QQMTDFIKQ-- 199
             + D  +  F        +    + V S N                    +T+++    
Sbjct: 183 FLNIDNAIGDFTATYPTVPVNTSGVAVESANVVDRNTYNVSTGPHTFSFDPITNYLTVTD 242

Query: 200 ---LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR---GIRDIMFVAVIG 253
                                S   I   +        S  +N +    I + +  A+  
Sbjct: 243 STLPIPAVVFPPAPYVAGQTISFDGIDVTLSGNPLPGDSFVINEKQNISIFETLNNAISW 302

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF-LQNKNNII 312
            E    +       V    +L  +   ++ I  +RA  GI  + +  ++   L  + NI 
Sbjct: 303 AEQGVVSTNQEQHQVDYNTVLDQLSSAMNHIYSRRADAGIRLQALENQQSKHLDVELNIS 362

Query: 313 DTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               S    ++   A ++       +  S    +K+Q L++ NY+
Sbjct: 363 KGK-SSIEDLDFAKAISEFEQSKIALTASQQTFSKVQGLTLFNYI 406


>gi|330861097|emb|CBX71364.1| flagellar hook-associated protein 3 [Yersinia enterocolitica
           W22703]
          Length = 373

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 115/350 (32%), Gaps = 32/350 (9%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++            ++  +++ TG+            +  +   Q ++   + 
Sbjct: 49  LSTSMLYQQNMQGVTNAQSLWMQSGQQLSTGKRVVNPSDDPMAASQAVMVSQSQSENNQY 108

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S   +  S     LS     +Q +   ++   +    ++     A  L+   +  +
Sbjct: 109 TLARSFARQSSSLETTVLSQATSTIQSIQSLIIGAAKDSLSDDDRASMATQLQGLKDQLL 168

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F G  S + P     T   +     D  +Q  ++ N    +      
Sbjct: 169 NQANSTDGNGRYMFGGFQSDKAPFAVSNT-GEVTYVGGDVAIQQRVDSNRTMTVGHTGSS 227

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDT-EGIDVSANVNMRGI 243
           V                   + +     N  N      +  I +T + +  S    ++G 
Sbjct: 228 V---------------FMALTSNATPEPNDVNGDPVAAESNIFNTIDTVLKSLKTPLQGT 272

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
           R          E                K +  +   L+ ++  +A +G   + ++    
Sbjct: 273 RGXRVKQQASDEM--------------DKGIRGMANSLNNVLSVQAEIGTQLQELDSLDS 318

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
              ++  I    +S    V+ ++A +        ++ SY   T +Q LS+
Sbjct: 319 LGSDRTLINKQRLSDLQDVDWNSAISSYVMQQAALQASYTTFTNMQGLSL 368


>gi|260772281|ref|ZP_05881197.1| flagellar hook-associated protein FlgL [Vibrio metschnikovii CIP
           69.14]
 gi|260611420|gb|EEX36623.1| flagellar hook-associated protein FlgL [Vibrio metschnikovii CIP
           69.14]
          Length = 397

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/396 (13%), Positives = 131/396 (33%), Gaps = 47/396 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGAR---VTSILEWEQEKNHI 62
           IS+   ++ +    +           ++ +G+     L  G        I    Q++  +
Sbjct: 5   ISSFHNYQSVQNDLRRQENKVHHNQAQLASGKKL---LSAGDNPLATHYIQNVTQQEEQL 61

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            + L +  LV  RL   +  +S+ ++        ++ ++ G          A  +++   
Sbjct: 62  RQYLDAIVLVRNRLEHQEVIISNAEEFTDKAKRMVMEMINGSLSPEDRETQARQIQEIAN 121

Query: 123 SFVTFANMTDE-GQYLFSGINSSEKPL------------NGYF--------------TKD 155
           +F+  AN+ DE G ++F+G     +P             + Y               T  
Sbjct: 122 NFLNLANVQDETGNFIFAGTRPKNQPFFRDNQGNVTYYGDDYQRKMRISNNLEMPFNTPG 181

Query: 156 SLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-----SMNAQQMTDFIKQLEDKFS----- 205
           +      +     F  E +    +   LE +       NA     F+  L   F+     
Sbjct: 182 NQMFMDINNPFGDFEPEYALQEGSELLLERATNSDDGDNASYTVTFVDMLNGGFAYQLER 241

Query: 206 -DDEYWANNW---SNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
             +    N++   +      +   IK +     S  +N R    +        E+   ++
Sbjct: 242 DGEVVEVNDFDPRTGVQYQGLTINIKGSITAGDSITLNPRKTFTVFDSFKKAIEYSKGSV 301

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
           +D +      ++   +      + + R+ +G     ++ +    ++    +    S+   
Sbjct: 302 SDASTTGKLHQITEELHTAFIHLNQVRSDVGARLSTLDLQEDQHEDFKISLARSKSQFED 361

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++   A  + +     ++ S +   K + L++ NYL
Sbjct: 362 LDYSQAVIEFNENSRALQASQLAFGKAKDLTLFNYL 397


>gi|309798077|ref|ZP_07692452.1| flagellar hook-associated protein 3 [Escherichia coli MS 145-7]
 gi|308118360|gb|EFO55622.1| flagellar hook-associated protein 3 [Escherichia coli MS 145-7]
          Length = 249

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQ 164
            AN TD  G+Y+F+G  +   P +     Y       K+  D 
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEANGDYVGGTESIKQQVDA 166


>gi|325916940|ref|ZP_08179184.1| flagellar hook-associated protein 3 [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536843|gb|EGD08595.1| flagellar hook-associated protein 3 [Xanthomonas vesicatoria ATCC
           35937]
          Length = 401

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 119/398 (29%), Gaps = 44/398 (11%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  ISTS ++ +             +L  ++ +GQ             + +  ++    
Sbjct: 1   MTDRISTSMMYSQSIASMGAKQTRLNQLESQLSSGQRLVTAKDDPVAAGTAVGLDRALAA 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I     + + V  RL   +  L+     +  +    +         +     A  L    
Sbjct: 61  ITRFGENANNVQNRLGLQENVLARAGDAMARVNELTIQANSSALAPDDRKAIASELSSLR 120

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKS 176
           +S V+ AN TD  G+YLF G      P      G        +K  +     F+ +    
Sbjct: 121 DSMVSLANSTDGTGRYLFGGTADGSAPFIKSNGGVTYNGDQTQKQVEVAPDTFVSDTLPG 180

Query: 177 LLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWS-NASDHNIKYRIKDTEGIDVS 235
                 +           +          D    A+  S N S +++++   +T  +  S
Sbjct: 181 SEIFMRIRTGDGTVDAHANTANTGTGLLLDFSRDASTGSWNGSSYSVQFTAANTYEVRDS 240

Query: 236 ANV-------------NMRGIRDIMFVAV----------------------IGTEFLSKN 260
            N                 G+R  +  A                       +     S  
Sbjct: 241 TNAVVSTGTYKDGADITAAGLRMRISGAPAVGDSFQIGASTTKDVFSTIDDLVGALNSDA 300

Query: 261 LTDGARNVLTK---KMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
           LT   +  +       +  + Q  S +I+ RA  G     I+     L++    + T +S
Sbjct: 301 LTQPQKATMINTLQTSMRDIAQASSKMIDARASGGAQLSAIDNANSLLESNEVTLKTTLS 360

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
               ++  +A  Q       ++ +  I  ++Q  S+ N
Sbjct: 361 SIRDLDYASAIGQYQLEKASLQAAQTIFQQMQSSSLFN 398


>gi|57237716|ref|YP_178964.1| flagellar hook-associated protein [Campylobacter jejuni RM1221]
 gi|57166520|gb|AAW35299.1| flagellin family protein [Campylobacter jejuni RM1221]
 gi|315058327|gb|ADT72656.1| Flagellar hook-associated protein flgL [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 750

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 37.4 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 9/146 (6%)

Query: 221 NIKYRIKDTEGIDVSAN-------VNMRGIRDI--MFVAVIGTEFLSKNLTDGARNVLTK 271
            I   +++      SAN        N+  I+D+  M  AV+     + + ++  RN   +
Sbjct: 605 TITSTVQNGPNFSFSANNSLTIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQ 664

Query: 272 KMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQL 331
             L  +      + +    +G     I          +  + +  S  I V+   A   L
Sbjct: 665 GALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNL 724

Query: 332 STLINKIEMSYMITTKLQKLSILNYL 357
             +    + S   +T + +LS+LNY+
Sbjct: 725 MQVQLAYQASLKASTTISQLSLLNYM 750


>gi|222084878|ref|YP_002543407.1| flagellin C protein [Agrobacterium radiobacter K84]
 gi|221722326|gb|ACM25482.1| flagellin C protein [Agrobacterium radiobacter K84]
          Length = 325

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 117/353 (33%), Gaps = 43/353 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           + ++T+        + + +NKD   + +++ +G             +       +++ ++
Sbjct: 2   SNVTTNRATSAALTVLRGVNKDLGVVQQQVTSGFRVGSASDDPTYWSMATTMRSDQSSLS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+   + ++  IV  +   LV   E  TD +    +   L+D  +S
Sbjct: 62  TITDALGLGASKVDTASTAMDTVVSIVSQIRAKLVSAQEAGTDKSAVNTDIQQLKDQLQS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A         FSG N        +    S    +   ++  F   +S        +
Sbjct: 122 VTQSAA--------FSGEN--------WLYNTSTQADTQKSVISNFTRGSS------GQI 159

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            + S+N       +    D              AS   +   I              R  
Sbjct: 160 SLVSINYDSSQTLMIDTAD--------------ASRGLLTKNIDANTLGTSDGTSTARNY 205

Query: 244 RDIMFVAVIGTEFLSK-NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
             +   +       ++ +++D   +     M++     L+ +    + LG+ +  I+++ 
Sbjct: 206 YLLAADSGTAPTDGTEISISDSTTDAELTDMINVTNSILTSVTSADSTLGVMKSRIDDQS 265

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
            ++   ++ I T +   +      A A+ S L    +M       +Q LSI N
Sbjct: 266 DYISKLSDGIKTSVGDLVDTNMEEASARQSALQTAQQMG------IQSLSIAN 312


>gi|170722884|ref|YP_001750572.1| flagellar hook-associated protein FlgL [Pseudomonas putida W619]
 gi|169760887|gb|ACA74203.1| flagellar hook-associated protein 3 [Pseudomonas putida W619]
          Length = 524

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 58/144 (40%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  ++      +    + +K +EE  +    +           +L+   + + +A+ 
Sbjct: 3   ISTAQFYQTSAANYQRNYSNLIKTNEEASSFVRVNTAADDPVGAARLLQLGNQADMLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + +T  L+ ++  L+S+  I+  +    +        + +    A  L    +  +
Sbjct: 63  KTNATNITNSLNQTETTLNSINTILTRVNELAIESGNAGYTDTERKAKAAELGQLEDQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
           +  N  D  GQYLF+G ++   P 
Sbjct: 123 SLMNSRDENGQYLFAGSSTDTAPF 146



 Score = 36.6 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNIN---EERVFLQNKNNIIDTYISKSIGVEQHT 326
               ++ +Q G   +      +G   K +         L   N+   + I  S   +  T
Sbjct: 436 LDSAIANIQSGQDALNTAVTDIGARGKALEIQQNTNESLSIANSTTQSSIRDS---DPAT 492

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILN 355
              +L+     ++ S     ++ +LS+ N
Sbjct: 493 VLVRLTQQQTLLQASQAAFARVSQLSLFN 521


>gi|188592124|ref|YP_001796722.1| flagellar hook-associated protein flgl [Cupriavidus taiwanensis LMG
           19424]
 gi|170938498|emb|CAP63485.1| Flagellin, N-terminal. bacterial flagellin family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 409

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 1/187 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +++S+++++            + + +++ TG+S           T  L   Q +    + 
Sbjct: 3   VASSTLYQQGLASMNYQQGALMHIQQQLGTGRSILTPSDDPVGATRALGVSQAQAVNGQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             S +     L+  +  L S+  I Q++   LV    G   +      A  L   Y   +
Sbjct: 63  ATSRNQANIALAAEENALDSVTTITQNIHTLLVQAGNGTMSDADRGSLATALEGLYNQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  GQ+LF G  S   P        +    +  Q+LQ  +     +   G+ + 
Sbjct: 123 SLANSDDGNGQFLFGGTRSGSAPFTQSAGASTYIGDNGQQLLQVDVARQMPAGNTGREVF 182

Query: 185 VSSMNAQ 191
           +S     
Sbjct: 183 MSVTGGA 189


>gi|68164539|gb|AAY87268.1| predicted flagellar-hook associated protein 3 [uncultured bacterium
           BAC17H8]
          Length = 288

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 106/347 (30%), Gaps = 69/347 (19%)

Query: 18  LTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEWEQEKNHIAERLHSN-SL 71
               +  D   + + + TG++      D          + + + ++K  + ER ++N   
Sbjct: 3   TLNRITGDIQGIQQRIATGRNILKTSDDPA------AGAKISFTKDKKIMLERYNANIDR 56

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
              RLS +++ +     ++Q +    V       +       A  +R+  +  ++ AN  
Sbjct: 57  AQNRLSQAESAVGIGVNLLQRIYELAVQARNDTNNAGDRATIAMEVRNLKDQMLSLANSR 116

Query: 132 D-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNA 190
           D  GQY+FSG     KP                     F+ + +  ++      + ++  
Sbjct: 117 DTNGQYIFSGYKVDTKP---------------------FVADENGDIIHAGDRGIHTLQI 155

Query: 191 QQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVA 250
                    L+                   ++  R+   E ++               + 
Sbjct: 156 SDNQRIATSLDGA-----------------DVFLRVPQEETVET----------VFATID 188

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
            +     S  + D          +  V   L     Q+  LG      + +R     +  
Sbjct: 189 AMIASLESGKMEDEH--------IGKVNIALEHFSLQQTKLGSQMNRADLQRGVNDKRLL 240

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +++  IS     +      +L   +     +     K+ + ++ NY+
Sbjct: 241 LMNEDISNLEDADIAKLVTELQAKLVSRNAAQQSFIKIAQDNLFNYI 287


>gi|330501144|ref|YP_004378013.1| flagellar hook-associated protein FlgL [Pseudomonas mendocina
           NK-01]
 gi|328915430|gb|AEB56261.1| flagellar hook-associated protein FlgL [Pseudomonas mendocina
           NK-01]
          Length = 305

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 1/167 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ S I   M+      + +  KL ++M T +              +L  ++E++ + + 
Sbjct: 4   ITNSQITSMMHNSMNASSAELGKLMQQMATNKRLLLPSDDPIASVRVLRVQREESSLEQF 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + V+  LST +A+L S    + ++   L+    G   +      AG L    ++  
Sbjct: 64  RKNIANVSGSLSTQEANLKSTSDAMLNVRDLLLWAANGSNTSEDLSAMAGELSIIEDTIF 123

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLE 171
           +FAN+ DE G+YLFSG  S    L       + +    D+  Q  + 
Sbjct: 124 SFANVRDEEGRYLFSGTLSDTPALAFDTATQTYSVTGNDKHRQAAVA 170


>gi|330892702|gb|EGH25363.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 211

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  +E  N   +    + +K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFYESTNTNYQRTYSNVLKTSEEVSSGIKLNTASDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   +  S+  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ASNIGTINTNIVNSETALTSIVDTMQTAREVIVSAGNGAYTDSDRLAKAAELKQYQSQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+F+G  SS  P
Sbjct: 123 GLMNSQDSNGQYIFAGSKSSAPP 145


>gi|88597597|ref|ZP_01100831.1| flagellin family protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190189|gb|EAQ94164.1| flagellin family protein [Campylobacter jejuni subsp. jejuni 84-25]
          Length = 750

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 39.3 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        +    +  +  N  +   ++  ID     N+  I+D+  
Sbjct: 583 SGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTID---EPNVDIIKDLDS 639

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      + +    +G     I        
Sbjct: 640 MIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTS 699

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  I +  S  I V+   A   L  +    + S   +T + +LS+LNY+
Sbjct: 700 FLSVNIQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQLSLLNYM 750


>gi|86150218|ref|ZP_01068445.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|218562507|ref|YP_002344286.1| lagellar hook-associated protein FlgL [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839334|gb|EAQ56596.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112360213|emb|CAL35008.1| putative flagellin [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|315929505|gb|EFV08699.1| putative flagellin [Campylobacter jejuni subsp. jejuni 305]
          Length = 750

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 38.1 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        +    +  +  N  +   ++  ID     N+  I+D+  
Sbjct: 583 SGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTID---EPNVDIIKDLDS 639

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      + +    +G     I        
Sbjct: 640 MIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTS 699

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  + +  S  I V+   A   L  +    + S   +T + +LS+LNY+
Sbjct: 700 FLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQLSLLNYM 750


>gi|284926121|gb|ADC28473.1| flagellar hook-associated protein FlgL [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 750

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 37.8 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        +    +  +  N  +   ++  ID     N+  I+D+  
Sbjct: 583 SGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTID---EPNVDIIKDLDS 639

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      + +    +G     I        
Sbjct: 640 MIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTS 699

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  + +  S  I V+   A   L  +    + S   +T + +LS+LNY+
Sbjct: 700 FLSVNVQSIKSNVIDVDYGEAMINLMQVQLAYQASLKASTIISQLSLLNYM 750


>gi|311031939|ref|ZP_07710029.1| flagellar hook-associated protein FlgL [Bacillus sp. m3-13]
          Length = 292

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 101/357 (28%), Gaps = 66/357 (18%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T   +      +  L+   +K   KL E++ TG+               + +     
Sbjct: 1   MRVT--QSMLTQNSLRQLSTSYSK-MGKLMEQLSTGKKISRPSDDPVVAMKGMYYRTNLT 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + +   + S     +  S+A L  +Q ++      +V               A  +   
Sbjct: 58  ELEQYKRNLSESYAWMENSEAALDHVQSVMHRARELVVQGSNDTYSPEDRQAMAKEIEQL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
              FV  AN    G+Y+F+G    +  +       S            F  E S+ +   
Sbjct: 118 KHDFVQVANTQVAGKYIFNGTAIDKPRITDANDPTS-----VSTENSPFEVEVSRGIKLQ 172

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
            ++   ++  + M +    L+                            E  D       
Sbjct: 173 SNINSENVFNKDMMEIWNGLQSAL-------------------------ETSDT------ 201

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
             ++D+M                               +    I  +R+ LG     +  
Sbjct: 202 DALKDLM---------------------------GRFDKSADTISAERSELGARYNRLEM 234

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +  +  +    +S +   +       L++  +    S  +  ++ + S+L++L
Sbjct: 235 VDNRIGYQEVVATRILSDNEDADIEKVITDLTSQESVHRASLGVGARVIQPSLLDFL 291


>gi|293414376|ref|ZP_06657025.1| flagellar hook-associated protein 3 [Escherichia coli B185]
 gi|291434434|gb|EFF07407.1| flagellar hook-associated protein 3 [Escherichia coli B185]
          Length = 272

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQ 164
            AN TD  G+Y+F+G  +   P +     Y       K+  D 
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEANGDYVGGTESIKQQVDA 166


>gi|205356372|ref|ZP_03223137.1| putative flagellin [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345757|gb|EDZ32395.1| putative flagellin [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 750

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        +    +  +  N  +   ++  ID     N+  I+D+  
Sbjct: 583 SGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTID---EPNVDIIKDLDS 639

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      + +    +G     I        
Sbjct: 640 MIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTS 699

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  + +  S  I V+   A   L  +    + S   +T + +LS+LNY+
Sbjct: 700 FLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQLSLLNYM 750


>gi|261409643|ref|YP_003245884.1| flagellar hook-associated protein 3 [Paenibacillus sp. Y412MC10]
 gi|261286106|gb|ACX68077.1| flagellar hook-associated protein 3 [Paenibacillus sp. Y412MC10]
          Length = 298

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 85/306 (27%), Gaps = 59/306 (19%)

Query: 52  ILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFP 111
            L +  E +   +   +       L  +   +  + +I Q     +V  + G        
Sbjct: 51  SLRYRSELSFNDQYQKNADTALSWLEYTDTVIGQVNEISQRANELIVNAVNGTNPQEGLD 110

Query: 112 INAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLE 171
                L+  YE  ++  N     +Y+F+G  + + P +                 QG   
Sbjct: 111 AINIELKQIYEQLISLGNSKFNDKYIFNGQLTDQAPYDKVLAPT-----------QGTDL 159

Query: 172 ENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEG 231
                          ++  Q +       ++ FS                I  R++    
Sbjct: 160 HGITYKFTEGATLNINVTGQDVFGEPSDPDNLFS----------------ILNRVQAALT 203

Query: 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVL 291
           ID  A                       NL+   R     +  S +    + +      L
Sbjct: 204 IDDKAAARTE----------------LDNLSS--RLSKINEARSEIGAKTNRVDLIFNRL 245

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351
           G  E N+      +Q K              +      +L    +  + S   + K+ ++
Sbjct: 246 GDLEINLT----AMQAKV----------EDADYAETIMKLKQDESVYQASLATSAKIMQI 291

Query: 352 SILNYL 357
           S+L+YL
Sbjct: 292 SLLDYL 297


>gi|148926573|ref|ZP_01810255.1| putative flagellin [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845267|gb|EDK22361.1| putative flagellin [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 750

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        +    +  +  N  +   ++  ID     N+  I+D+  
Sbjct: 583 SGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTID---EPNVDIIKDLDS 639

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      + +    +G     I        
Sbjct: 640 MIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTS 699

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  + +  S  I V+   A   L  +    + S   +T + +LS+LNY+
Sbjct: 700 FLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQLSLLNYM 750


>gi|73539457|ref|YP_299824.1| flagellar hook-associated protein FlgL [Ralstonia eutropha JMP134]
 gi|72122794|gb|AAZ64980.1| Flagellin, N-terminal [Ralstonia eutropha JMP134]
          Length = 404

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/402 (13%), Positives = 114/402 (28%), Gaps = 50/402 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++TS+++++            + + +++ TG+            T  L   Q      + 
Sbjct: 3   VATSTLYQQGLASMNMQQSSLLHIQQQLGTGRKVLTPSDDPVAATRALGVTQASAINDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             S +     L   +  LS++  + Q++   LV    G   +      A  L+  YE  +
Sbjct: 63  TTSRNQANISLGMEENTLSTVTTVTQNIQTLLVQAGNGTLSDVDRASLATALKGQYEQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL------------------------------------ 148
             AN  D  GQYLF G  S   P                                     
Sbjct: 123 GLANADDGNGQYLFGGTLSGSPPFVQGGGSVQYIGNTEQQQYQVDVARQMPAGSNGREVF 182

Query: 149 ------NGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLED 202
                  GY  K + A        Q    + +  L           ++  M   I     
Sbjct: 183 QSVQGSAGYVLKGNSANTGSATYGQVSTTDPTNPLYGTPLTLTFDDSSGSMQYTITDPSG 242

Query: 203 KFSDDE--YWANNWSNASDHNI-----KYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTE 255
                    + +    A            +  DT  I  ++        ++  V      
Sbjct: 243 NPVGGTPLAYTDPGQIAVAGVTFTVKGAPKTGDTISIQPASQAGTDMFANLKSVIDALDA 302

Query: 256 FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
            +  +      N +    +      L  ++  RA +G   + ++       N+       
Sbjct: 303 PVHSDADSANLNNVIATGIRQFSNSLDNVLTVRASVGSRMQELDALDTIGTNRGLNYTET 362

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +S    ++  +A  +       ++ +     ++Q +++  YL
Sbjct: 363 LSGLQDLDYASAITEYYQRQTALQGAQQSFMQIQGMNLFKYL 404


>gi|121612548|ref|YP_001000562.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005495|ref|ZP_02271253.1| flagellar hook-associated protein FlgL [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249343|gb|EAQ72303.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 750

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        +    +  +  N  +   ++  ID     N+  I+D+  
Sbjct: 583 SGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTID---EPNVDIIKDLDS 639

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      + +    +G     I        
Sbjct: 640 MIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTS 699

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  + +  S  I V+   A   L  +    + S   +T + +LS+LNY+
Sbjct: 700 FLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQLSLLNYM 750


>gi|309390122|gb|ADO78002.1| flagellar hook-associated protein 3 [Halanaerobium praevalens DSM
           2228]
          Length = 297

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 59/143 (41%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ S + + M    K    D   L+E++ +G+          +V+  + ++ + N  ++ 
Sbjct: 3   VTNSMMVQNMLDHLKNNMGDLNDLNEQLSSGKLFQTPSDAPIKVSESMNYKSQLNRNSQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     L+T+++ L S  K++Q      +        +    + A  +++  +  +
Sbjct: 63  QRNLNQAENWLNTTESALKSGTKVIQRARELTIKTANDSLTSGDRKMVAKEMKELRDELI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPL 148
             +N      Y+FSG  +  KP 
Sbjct: 123 DISNAKLGDSYIFSGQKTDAKPF 145


>gi|332798815|ref|YP_004460314.1| flagellar hook-associated protein 3 [Tepidanaerobacter sp. Re1]
 gi|332696550|gb|AEE91007.1| flagellar hook-associated protein 3 [Tepidanaerobacter sp. Re1]
          Length = 296

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 96/310 (30%), Gaps = 59/310 (19%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
            V   ++  ++   I +   +       +  ++  L++   ++Q +    V +  G    
Sbjct: 45  GVAMAIKLRRQIAAIQQYNSNAQDALTWMKDTETALTNTGDVLQRLDELTVQVANGTLTP 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ 167
           +        +++  +     AN T   +YLF G          Y T      K       
Sbjct: 105 DDREKILYEVKELKDQLFQEANSTSLDRYLFGG----------YSTNKPPFIK------- 147

Query: 168 GFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIK 227
                             + +  +     I++  D F              +  I+Y + 
Sbjct: 148 ------------------NDITGE-----IEKNPDTF--------------NGAIEYDLG 170

Query: 228 DTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQ 287
            +E I ++         DI        E L   +       L+ ++L+ ++   S +++ 
Sbjct: 171 QSERISINLTGYD-VFSDIFKA----VENLETAIEADDTEALSGQVLADIKNATSTVLKY 225

Query: 288 RAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTK 347
           RA +G     +    + L          +S    ++       L    +    S  +  +
Sbjct: 226 RAQIGARSNRLEATVLRLDANEVDYKAQLSNIEDIDLAQMITDLKMEESVYRASLSVGAR 285

Query: 348 LQKLSILNYL 357
           + + S++++L
Sbjct: 286 IIQPSLVDFL 295


>gi|301168513|emb|CBW28103.1| putative flagellar hook-associated protein 3 [Bacteriovorax marinus
           SJ]
          Length = 332

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/359 (10%), Positives = 118/359 (32%), Gaps = 34/359 (9%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVT----GQSSDYGLQLGARVTSILEWEQEK 59
           + +S +S    +N    +       L  +  T     + SD  +         L      
Sbjct: 2   SRVSENSSSAALNFSLGKAKSKLEDLQMKGATLKDISRPSDNPIS----NVEALSITSNM 57

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
           +   +   +       L+ ++  L  +  ++       +       + +     A  +  
Sbjct: 58  SDNKQYQRNADYALLHLNVTEKSLEQLTDLLVKAKEIAISQSSDFYNADVRKNIANEVNQ 117

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
                ++ AN     +Y+FSG ++  +P +     +     +  ++ + F      +L  
Sbjct: 118 LRNLALSIANKRVGQKYIFSGYSTLTQPFDVAGKYNGDKGHTTVEVAKDFFL--PLNLNG 175

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
            +    S   + +    +K++++                  +    +++   +  +   N
Sbjct: 176 HEIFYSSDDTSDKNIHPLKEIKEP-----------------DTSKPVENKRELASTEGEN 218

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVL-TKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
                       I  +  S ++     + +  + +L      +S +I  R  +G    ++
Sbjct: 219 ------FHKRDNIFAQLESLSVALETNDAVLIQNLLEEFDDSISRLITLRTRVGSITSSV 272

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              +  L+++N    T  SK +  +     + ++   + ++ +Y  +  L   +++++L
Sbjct: 273 MNSKSRLESENIEGATRKSKLVDADIAEVFSDITKHQSVLKTTYQSSQGLMNQNLMDFL 331


>gi|91224192|ref|ZP_01259455.1| flagellar hook-associated protein L [Vibrio alginolyticus 12G01]
 gi|269968151|ref|ZP_06182184.1| flagellar hook-associated protein 3 [Vibrio alginolyticus 40B]
 gi|91191103|gb|EAS77369.1| flagellar hook-associated protein L [Vibrio alginolyticus 12G01]
 gi|269827219|gb|EEZ81520.1| flagellar hook-associated protein 3 [Vibrio alginolyticus 40B]
          Length = 299

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 118/353 (33%), Gaps = 57/353 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS +   + M    +  +    +  ++M TG+              +L  ++E + IA+ 
Sbjct: 3   ISDNQFSQMMLHSLQSNSAGLGEALQQMSTGKRLTKLSDDPMASIKLLNLDRETSAIAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
            ++   V   LS+ + HL S+++ ++ M    +    G   +         L+   +S  
Sbjct: 63  KNNIENVKTTLSSQETHLDSIKESLKSMRDIALWGANGSLTDESRGGMITELKSYRDSIE 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           +  N  DE G YLFSG  +    +         +K S   +++G  ++   ++  G  ++
Sbjct: 123 SSFNAQDEEGHYLFSGTKTDTAAV---------SKASGSYVIEGNSDKRVVTIAKGVTMD 173

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            S+M A+++ D                        HN+  +I        S   N     
Sbjct: 174 -SNMTAKEILDLGGG--------------------HNVLNQIDALIKEFESPTAN----- 207

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                     +  +S +    S ++     +G    N++     
Sbjct: 208 ---------------------FRAEVEASISAIDDTFSNVLGTMTEIGGRHNNLDLVGGA 246

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                  +D        ++   A  +LS  +  ++ +     K+  LS+ + L
Sbjct: 247 HSENKLFVDKVSGDLSALDYGEASVRLSNYMAALQATQASYVKIDGLSLFDRL 299


>gi|289803847|ref|ZP_06534476.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 274

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 68/179 (37%), Gaps = 5/179 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++E+          + +KL E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLFQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  ++ LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
             AN TD  G+Y+F+G  +   P +    GY   +    +  D      +      +  
Sbjct: 123 NLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQQVDSARTMVIGHTGAQIFN 181


>gi|296535169|ref|ZP_06897391.1| flagellin domain protein [Roseomonas cervicalis ATCC 49957]
 gi|296264497|gb|EFH10900.1| flagellin domain protein [Roseomonas cervicalis ATCC 49957]
          Length = 361

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/345 (11%), Positives = 107/345 (31%), Gaps = 7/345 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  + I+ S     +  L  ++N+      +++ TG         GA      +   +  
Sbjct: 1   MANSVITNSGAKVALQSL-NKINQQLDTTQKKVSTGYKVSDAKDDGAAYAVAQKVRADVT 59

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKI-VQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
            +         V   L+++   + ++      D+   L  L +   D           + 
Sbjct: 60  GLNSANDQLGGVNGLLTSTLKAVDTVSNTLATDVSNVLTKLSDSNLDAETRKQYTEQFKS 119

Query: 120 SYESFVTFA-NMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
             +   T   + +  G  L S   +   PL G          + ++  Q +    S +  
Sbjct: 120 LAKQMNTTLQDASYNGTRLLSSTATD--PLTGNAYSGGSMAVTRNEKGQSYTVNESGATA 177

Query: 179 AGQHLEVSSMNAQQMTDFIKQLED-KFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237
                  +             L   ++ D +   +N   A+D         +  +D   +
Sbjct: 178 DQMSFTANISGGAVAAGATSGLVGVRYYDADADTDNLIEATDVVTGDAASTSGSLDDIVS 237

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL-SGIIEQRAVLGISEK 296
           ++    + ++  +V   +      T     V+   ++      +       +  LG   K
Sbjct: 238 ISAGAAKALLQGSVQVDDGAGAKTTTAVDAVMVDGVVLKTFTAVKESSNAAQNQLGNDSK 297

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
            ++ +  +   + + ++  +   +  +     A+L+ L  + +++
Sbjct: 298 FVSNQMTYNSARIDAMEEGLGSLVDADLAKESARLTALQTQQQLA 342


>gi|157376209|ref|YP_001474809.1| flagellar hook-associated protein FlgL [Shewanella sediminis
           HAW-EB3]
 gi|157318583|gb|ABV37681.1| flagellar hook-associated protein 3 [Shewanella sediminis HAW-EB3]
          Length = 396

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 134/396 (33%), Gaps = 46/396 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ +F +      +    + K+ +++ +G+  +           I    Q+   + + 
Sbjct: 3   ISTAQMFNQGITSVLDRQSATSKILDQLSSGKKVNTAGDDPVAAVGIDNLNQQNALVDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +    T  L+ +++ L + +K+V      ++  + G   +++  + A  LR + +  +
Sbjct: 63  VKNIEYATNHLAITESKLGTAEKLVGSSRELVIRAVNGGLADSERQMIADELRGTLDELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKD----------SLAKKSFDQMLQGFLEENS 174
           + AN  D  G Y+FSG  +  +      T +               S   +      +++
Sbjct: 123 SVANTKDESGNYMFSGNETGTQAFAFDATGNIVYSGDNGVRQSVVASGVTIGTNIPGDSA 182

Query: 175 -KSLLAGQHLEVSSMNAQQMTDF------IKQLEDKFSDDEYWANNWSNASDHNIKYRIK 227
             +  +G     ++  A Q  DF      I            +    ++    +    + 
Sbjct: 183 FMNAPSGMGDYSANYLATQAGDFKVESAKITNPAVHVEQTYTFTMVGADLEIRDATNTLV 242

Query: 228 DTEG--------------------------IDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
            TE                             +S   N+     I     +       N 
Sbjct: 243 QTEVNFDSSNPIVYNGLEVKLDGMPAAGDSFSISPAANVSIFDTINEAITLLESPNKINT 302

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
             G       ++L+ +  G++ I  +R V G + K++    +    +  +  + +S    
Sbjct: 303 PQGMAE--LAQVLNNIDSGVNQISIERGVAGNNLKSLESHNMTHVEEKVVNSSALSMLED 360

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++  +A  +       +     + +K+  +S+ +Y+
Sbjct: 361 LDYASAITEYEKQQLALNAVSNVFSKVGSVSLFDYI 396


>gi|86153224|ref|ZP_01071428.1| flagellar hook-associated protein FlgL, putative [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85842950|gb|EAQ60161.1| flagellar hook-associated protein FlgL, putative [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 750

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        +    +  +  N  +   ++  ID     N+  I+D+  
Sbjct: 583 SGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTID---EPNVDIIKDLDS 639

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      + +    +G     I        
Sbjct: 640 MIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVNKLNTTMGAYHNTIEGVNTRTS 699

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  + +  S  I V+   A   L  +    + S   +T + +LS+LNY+
Sbjct: 700 FLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQLSLLNYM 750


>gi|297521523|ref|ZP_06939909.1| flagellar hook-associated protein FlgL [Escherichia coli OP50]
          Length = 230

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           ST  ++++          + +K  E+M TG+            +  +   Q +   ++  
Sbjct: 4   STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYT 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            + +  T+++S  ++ LS +   +Q+    +V    G   ++     A  ++   +  + 
Sbjct: 64  LARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQLLN 123

Query: 127 FANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQ 164
            AN TD  G+Y+F+G  +   P +     Y       K+  D 
Sbjct: 124 LANTTDGNGRYIFAGYKTETAPFSEANGDYVGGTESIKQQVDA 166


>gi|86152073|ref|ZP_01070285.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124382|ref|YP_004066386.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840858|gb|EAQ58108.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018104|gb|ADT66197.1| flagellin family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 750

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 38.1 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        +    +  +  N  +   ++  ID     N+  I+D+  
Sbjct: 583 SGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTID---EPNVDIIKDLDS 639

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      + +    +G     I        
Sbjct: 640 MIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTS 699

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  + +  S  I V+   A   L  +    + S   +T + +LS+LNY+
Sbjct: 700 FLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQLSLLNYM 750


>gi|253996312|ref|YP_003048376.1| flagellar hook-associated protein FlgL [Methylotenera mobilis JLW8]
 gi|253982991|gb|ACT47849.1| flagellar hook-associated protein 3 [Methylotenera mobilis JLW8]
          Length = 303

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 8/221 (3%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST++I++        L  +  KL +++ TGQ                E  Q K+  ++ 
Sbjct: 3   ISTNTIYQSGISKITNLQSEQTKLMQQIATGQRIASPSDDPVGAARAAELAQAKSANSKF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      +L+T +++L+S+  ++  +   LV        + +    A  L+ + E  +
Sbjct: 63  ADTRQTAQLKLNTLESNLTSVTNLMTSIQSSLVSAGNATYSDLERGFVAADLKTALEGLI 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL------NGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
             AN  D  G YL+SG  +   P         Y    +      D   Q  +      + 
Sbjct: 123 GLANTKDASGNYLYSGFQTDTAPFVANATGAAYVGDTNNQSLQVDTSRQMVVNATGDDVF 182

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASD 219
                +V     Q +   +       +   + A   S  S 
Sbjct: 183 QAGGNDV-FATIQNLVTLLNTPLTPANQAAFTAGVASGLSS 222


>gi|34498333|ref|NP_902548.1| flagellar hook-associated protein 3 [Chromobacterium violaceum ATCC
           12472]
 gi|34104187|gb|AAQ60546.1| flagellar hook-associated protein 3 [Chromobacterium violaceum ATCC
           12472]
          Length = 309

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/353 (11%), Positives = 102/353 (28%), Gaps = 49/353 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++++++        L  D ++L+ ++ TG+              I           + 
Sbjct: 3   ISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   V+  LS S + L ++  ++  M    +          +       + +      
Sbjct: 63  GKNTQAVSSWLSLSDSTLQNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELT 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
            +AN TD  G +LFSG   +  P +                          +   G + +
Sbjct: 123 GYANATDGNGNFLFSGNAVTTAPFS-----------------VNMNASPPVTTYNGDNGQ 165

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            S   +   T  I    +                          +      A  N     
Sbjct: 166 RSVQVSASRTMTISDPGNVVFGIPG------------------GSPTATFDALAN----- 202

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                     + L +N            +++ +      +   +A +G  E+     +  
Sbjct: 203 --------LYDLLGQNPKPANFPSQISTIINQISNATQQLSIAQASVGSREQENETLQGM 254

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             + +   ++ I     V+   A +  +     ++ +     ++ +LS+ +Y+
Sbjct: 255 SGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQLSLFSYI 307


>gi|213585979|ref|ZP_03367805.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 276

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 68/179 (37%), Gaps = 5/179 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++E+          + +KL E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLFQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  ++ LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
             AN TD  G+Y+F+G  +   P +    GY   +    +  D      +      +  
Sbjct: 123 NLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQQVDSARTMVIGHTGAQIFN 181


>gi|269836593|ref|YP_003318821.1| flagellar hook-associated protein 3 [Sphaerobacter thermophilus DSM
           20745]
 gi|269785856|gb|ACZ37999.1| flagellar hook-associated protein 3 [Sphaerobacter thermophilus DSM
           20745]
          Length = 291

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 51/145 (35%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ + E +            ++ +++ +G+             ++L+ +  +  I + 
Sbjct: 3   VSTAMMSETILWNITRNAARLDRVADQIGSGRQIRRPSDDPVGTANVLQLDSTRARIQQH 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           L +       +  +   LSS+   +Q      +    G             L+   E  +
Sbjct: 63  LRNIDDARSWIDATDQALSSINAGIQRAREITLAAANGTLAPENRDAIETELQRILELAI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNG 150
             AN    G+Y+FSG  +     +G
Sbjct: 123 GTANTRLNGRYIFSGQKTDTPAFSG 147



 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 52/176 (29%), Gaps = 8/176 (4%)

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
               + +N + +    K     FS                I   I     + ++      
Sbjct: 123 GTANTRLNGRYIFSGQKTDTPAFSGPPN--APVYQGDSGPIVRVIDVGVTVTINVTG--- 177

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
              D   +  +     ++           +  +  +    + ++  +A  G     + E+
Sbjct: 178 ---DTAILPTLNALAQAQAAVAANDPDAMRAAIDALDDAHTALLTAQARAGAIGSQLEEQ 234

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              L+  +  +    S+   V+   A +  STL    + S    ++    S+ +YL
Sbjct: 235 ASRLEALDVSVARLRSQIQDVDLAKAVSDYSTLQTIYQASLAAGSRGILPSLFDYL 290


>gi|37525848|ref|NP_929192.1| flagellar hook-associated protein FlgL [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785277|emb|CAE14218.1| Flagellar hook-associated protein 3 (HAP3) (Hook-filament junction
           protein) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 321

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 125/350 (35%), Gaps = 38/350 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ ++++            ++   ++ +GQ            +  +   Q +    + 
Sbjct: 3   VSTNILYDQKMTSITTAQSKWMQQGAQLSSGQRVINPSDDPMAASQGVMVAQAEAQNQQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + + S     +S   + +S    +VQD+   LV  + G   +      A  L    E  V
Sbjct: 63  ITARSFAKNAISMQLSVVSKAVGVVQDIHESLVATVNGVLSDEDRNSLAIQLTGFKEQLV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N TD  G+Y+F+G  +  KP     T  +++     + +   ++ N   ++     +
Sbjct: 123 NLGNTTDGNGRYIFAGYKTDMKPF-DESTTGTVSYLGGSEEITQKVDSNRSMIIGHTGKQ 181

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V          F+    +   + +       N S+ +I         ID++         
Sbjct: 182 V----------FLSSTSNPIKEPDG------NQSESDIFK------TIDMAIQSLKTPFV 219

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           +             +   D A   L  K     +  L+ I    +VLG+ +    E+   
Sbjct: 220 E-----------ADQKSRDDALE-LLNKANRGARNALNNISSVESVLGL-QLREMEDLDN 266

Query: 305 LQNKNNIID-TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           L  + ++ + + +S+ + VE ++A +        ++ SY     ++ +S+
Sbjct: 267 LGAERSLANKSRLSQLVDVEWNSAISNYYQQQAVLQASYKTFADMKGMSL 316


>gi|283954448|ref|ZP_06371968.1| putative flagellin [Campylobacter jejuni subsp. jejuni 414]
 gi|283794065|gb|EFC32814.1| putative flagellin [Campylobacter jejuni subsp. jejuni 414]
          Length = 750

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLSSGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKE 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           S S   +    S   L  M K+ ++    +                A  L    ES V  
Sbjct: 65  STSRAQEMTQNSMKALQDMVKLFENFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSINGQYLFAGSQVANKPFDS 147



 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        +      A+  N  +   ++  ID     N+  I+D+  
Sbjct: 583 SGTNIEISLSDSQSGRFPQPPFTTTSLVANGPNFSFSANNSLVID---EPNVDIIKDLDS 639

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      I +    +G     I +      
Sbjct: 640 MIDAVLKGNMRADSESEDPRNTGMQGALKRLDHLADHISKLNTTMGAYHNTIKDVNTRST 699

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  + +  S  I ++   A   L  +    + S   +T + +LS+LNY+
Sbjct: 700 FLSVNVQSIKSNVIDMDYGEAMINLMQVQLAYQASLKASTTISQLSLLNYM 750


>gi|241203117|ref|YP_002974213.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857007|gb|ACS54674.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 320

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 100/334 (29%), Gaps = 38/334 (11%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           TS+       + + +NK++ +  +++ +G   +      +  +       +  ++     
Sbjct: 6   TSAAAVNALAVLRSINKEASQTQQQVSSGYRIETAADDASYWSVATVMRSDSTNLGTIGD 65

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           +  L   ++  +   + S   ++ ++   LV   E   D +K        ++  ++ V  
Sbjct: 66  ALGLGAAKVDATYTAMDSAIDLIGEIRAKLVSAREPGADKDKINAEISEYKEQLQTVVES 125

Query: 128 ANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSS 187
              +  G+               +      A     Q++ GF+   +    A      SS
Sbjct: 126 --TSFAGE--------------NWLLNGDAAAPPTWQVISGFVRAPTGEYQAQTIDFPSS 169

Query: 188 MNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM 247
                             D          AS   +   +      +       R    + 
Sbjct: 170 QT-------------ILIDKNN-------ASGGLLTKSVDANAINNSG--ATSRNYYLLN 207

Query: 248 FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN 307
             +          +     +     ML      LS +    A +G+ +  I+++  +  N
Sbjct: 208 ANSTTPATGTEIAIGKNTTDAQLTDMLDVTDSLLSSLTTTAASIGVMKTRIDDQIDYTAN 267

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
            ++ ID  +   +  +   A  +   +  + +M+
Sbjct: 268 LSDSIDKSVGALVDTDMDEASIRQKAIETQKQMA 301


>gi|95928659|ref|ZP_01311406.1| flagellin-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135449|gb|EAT17101.1| flagellin-like [Desulfuromonas acetoxidans DSM 684]
          Length = 294

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 5/149 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+TT   T+S++  M +       +  +L+  M T +  +      + V +I     +  
Sbjct: 2   MRTT---TTSVYRSMQLNIARAEDELNRLY--MHTEKRVNVASDDPSAVRAIENARSQMT 56

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                + +   V   +     +L +++ I+Q +       +     +      A  +   
Sbjct: 57  MSDRYIENIETVQDGMDIVDGYLDTVENIMQRIQEITTAAINSSLSDADAVTYADEVATL 116

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLN 149
            E  V  AN    G+YLF+G     +P +
Sbjct: 117 KEQLVDVANTQVNGKYLFAGFTDDTQPFS 145


>gi|325111106|ref|YP_004272174.1| flagellin domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324971374|gb|ADY62152.1| flagellin domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 743

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 57/145 (39%), Gaps = 2/145 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG-QSSDYGLQLGARVTSILEWEQEKNHIAE 64
           I  S +F R       ++ + ++L +++ TG +  + G +  +     +  +Q      +
Sbjct: 11  IPNSLLFTRSLQNLDRVSSEYLRLQDQISTGLKFQNIG-ENPSAAIQTIVLQQSLERNEQ 69

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
              +       L+ ++  L  +  +   M   ++  L   +  ++    A  +    +  
Sbjct: 70  LQSNVETNRSLLTATEQALGDIGDVFNQMQTFILAGLGDGSSPSEKAQMANEVDTLIQHV 129

Query: 125 VTFANMTDEGQYLFSGINSSEKPLN 149
           V  +N T  G+YLF G  ++  P +
Sbjct: 130 VNISNSTFRGRYLFGGSQNTAAPFS 154


>gi|257095352|ref|YP_003168993.1| flagellar hook-associated protein 3 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047876|gb|ACV37064.1| flagellar hook-associated protein 3 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 446

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ I+       +   +   KL  ++ + +               L   Q K   A+ 
Sbjct: 3   ISTNQIYSAGVRSIQRNQEQLAKLQNQISSDRRMLTPADDPVASARALTITQAKGLTAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +    + RL    + L+S+  ++Q     +V        ++     A  L   ++  +
Sbjct: 63  VENQRDASDRLGLVDSQLTSLTDLLQSARSRVVQASNTILGDSDRQAIAAELAARFDEML 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPL 148
             AN    +G YLF+G  S   P 
Sbjct: 123 GIANSRNAQGDYLFAGYQSETTPF 146


>gi|118475640|ref|YP_891858.1| flagellar hook-associated protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414866|gb|ABK83286.1| flagellar hook-associated protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 947

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 3/137 (2%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
            E E N + +   +++  T+    S   L+     + +    L+       +       A
Sbjct: 52  LEYEINLLDQVKQTSTKATEFSKNSDKALNDFVSKLTEFKTKLIQAGNDIHNETSRNAIA 111

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLN---GYFTKDSLAKKSFDQMLQGFLE 171
             L    +  +  AN +  GQ+LFSG     KP++    Y   + L   +          
Sbjct: 112 NDLEGLKKHLIDIANSSINGQFLFSGTALDTKPIDSAGNYHGNNQLINAAIGANQTTAYN 171

Query: 172 ENSKSLLAGQHLEVSSM 188
            + ++L  G+  +   +
Sbjct: 172 IDGQTLFLGKDNDYKKI 188


>gi|114565762|ref|YP_752916.1| flagellin-like protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114336697|gb|ABI67545.1| Flagellin and related hook-associated proteins-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 870

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 101/329 (30%), Gaps = 19/329 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++   +   +N           K   ++ T +  +      A +   L          + 
Sbjct: 5   VTNKMLVNELNRNLTNNMLRMDKFQRQLSTTRKINTPSDDPAGLVKSLRLRTNLIEGEQY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           L + +     L T+ A   ++ +I+ +     V           F   A  +R+  E   
Sbjct: 65  LTNINESLGFLDTTDAAFGNINEILHEAREMAVKASTDSNVKPDFAAMAKKIREMNEQLK 124

Query: 126 TFANMTDEGQYLFSGINSSEKPL--NGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             AN T   +Y+F+G N +E P     +       +      ++     +++    G+  
Sbjct: 125 MIANSTYGSKYIFAGSNVTETPYENGNWRGNSEAMETEIGVGVKIPFNIDAREFFVGRLD 184

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           E+    A  +    +++  K   +  +  N+S  S+     R    E  ++    N  G+
Sbjct: 185 ELQVDPASGINA--EKVVGKNLQEGNYKVNYSLVSN---AARGTARESGNMLTADNNTGM 239

Query: 244 RDIMFVA-----VIGTEFLSKNLTDGARN-------VLTKKMLSTVQQGLSGIIEQRAVL 291
                 A            +  LT    +           +   T+   +SG I      
Sbjct: 240 FFFYDNAGTPANASIAIGTAAGLTASVYSGFLNIKVTTVDEATDTLTVDISGRIAIEGET 299

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSI 320
           G  + NI    + +   N      IS + 
Sbjct: 300 GYQDINIAGVSLNMAAANGDAIGSISAAQ 328



 Score = 37.0 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 32/77 (41%)

Query: 281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEM 340
           +  ++  R+ +G     +  ++  L++      + +SK+   +      QL    N    
Sbjct: 793 MEELLLYRSTVGARVNRLELQQSRLESIQETFTSLLSKTEDADMAEVIMQLQLQENVYRA 852

Query: 341 SYMITTKLQKLSILNYL 357
           S     ++ + S+L++L
Sbjct: 853 SLAAGARIIQPSLLDFL 869


>gi|331011050|gb|EGH91106.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 215

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  +E  N   +    + +K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFYESTNTNYQRTYSNVLKTSEEVSSGIKLNTASDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   +  S+  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ASNIGTINTNIVNSETALTSIVDTMQTAREVIVSAGNGAYTDSDRLAKAAELKQYQSQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+F+G  SS  P
Sbjct: 123 GLMNSQDSNGQYIFAGSKSSAPP 145


>gi|296122955|ref|YP_003630733.1| flagellar hook-associated protein 3 [Planctomyces limnophilus DSM
           3776]
 gi|296015295|gb|ADG68534.1| flagellar hook-associated protein 3 [Planctomyces limnophilus DSM
           3776]
          Length = 638

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%)

Query: 276 TVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLI 335
            +++    I   R  +G  ++ I+E    L ++N +    +S     +   A  QL  L 
Sbjct: 557 LLEKASGQITISRTEIGTRQQLIDEVGNRLDDQNLLTKETLSNIFDTDLTEAATQLLQLR 616

Query: 336 NKIEMSYMITTKLQKLSILNYL 357
              E S  +T +  +LSILNYL
Sbjct: 617 QVYEASMQLTAQTLQLSILNYL 638



 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 48/142 (33%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            S ++   N   +       +L +++ T Q  +   +           +     +     
Sbjct: 13  NSLLYSNANRDLQTGTSLISRLQQQINTQQKYNLLSENPTATRQTSSLQSLLERVQGVRS 72

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
            ++     LS +   L ++  +V    G L   +   +   +    A  +    +S +  
Sbjct: 73  QHTYNQGFLSAADNALGAVNDVVVQAKGILQTGIGSTSTPEEKIGLANEVATLIQSALNS 132

Query: 128 ANMTDEGQYLFSGINSSEKPLN 149
           AN   + ++LFSG  +   P +
Sbjct: 133 ANTQYQDRFLFSGTATGVSPFD 154


>gi|163750563|ref|ZP_02157801.1| flagellar hook-associated protein FlgL [Shewanella benthica KT99]
 gi|161329718|gb|EDQ00707.1| flagellar hook-associated protein FlgL [Shewanella benthica KT99]
          Length = 404

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 2/203 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ +F +      +    +  + E++ +G+  +           I    Q+   + + 
Sbjct: 3   ISTAQMFNQNINSVLDRQSATNSIMEQLSSGKRVNTAGDDPVAAIGIDNLYQQNALVDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +    T  L+ +++ L S + +V      ++  + G   +N+    A  LR S E  +
Sbjct: 63  VKNIDYATSHLALTESKLGSAEALVSSTKDQVLRAINGTVTDNERQTIADELRSSLEELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G YLFSG  +  +P   + T  ++       + Q  +              
Sbjct: 123 AIANSKDESGNYLFSGYETGTQPFA-FNTSGNIVYSGDSGVRQSIVASGVTVGTNSPGDS 181

Query: 185 VSSMNAQQMTDFIKQLEDKFSDD 207
                   M DF        S D
Sbjct: 182 AFMNAPNAMGDFSVNYLPGQSGD 204


>gi|212637792|ref|YP_002314317.1| flagellin [Shewanella piezotolerans WP3]
 gi|212559276|gb|ACJ31730.1| Flagellin [Shewanella piezotolerans WP3]
          Length = 305

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 114/358 (31%), Gaps = 61/358 (17%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S  +++       +    D  KL++ M TG+S             ++  +++     + 
Sbjct: 3   VSMLNLYSNNLQSLQNSTADISKLNQMMATGKSILRPSDDPIGSVKVIGGQRDLAATNQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +   ++   S ++ ++SSM ++   M    V    G          A  + +  E+F 
Sbjct: 63  IKNTESLSTSFSRAETYMSSMVELQTRMREITVAANNGSLSPEDRAAYAAEMEELLEAFT 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN-----GYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
              N  D  G YLFSG  +   P++      Y  +     +        ++  N  +   
Sbjct: 123 DTVNAKDEGGNYLFSGNLTDTAPISKDASGNYLYQGDNNHREVQTSGSSWMTANVTASEF 182

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                 S +   Q  DFI  L D           +S A+   +                 
Sbjct: 183 LFSNGSSDI-LNQTQDFINVLNDPSLAPGDPT--FSQAATDMLTS--------------- 224

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
                                                +   L+ I      +G  +  I+
Sbjct: 225 -------------------------------------LDDTLTSISSAITDIGGKQNTIS 247

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +   + +    +  I ++ G++   A A+ +  +  ++++     ++ +LS+ N++
Sbjct: 248 LIQTSHEERVLFNEEVIGETEGLDYAQATAEFNLKLTALKVTQQTFVQVTQLSLFNHM 305


>gi|289208121|ref|YP_003460187.1| flagellar hook-associated protein 3 [Thioalkalivibrio sp. K90mix]
 gi|288943752|gb|ADC71451.1| flagellar hook-associated protein 3 [Thioalkalivibrio sp. K90mix]
          Length = 416

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ IF+      +    +  +   ++ +G+         +  T I ++E+      + 
Sbjct: 3   ISTTQIFQSGINQIQAGQGELNRTSLQLGSGKRILSPSDDPSGATQINQFERIIKATKQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      R+   ++ L+     +Q     +V               A  LR   +  +
Sbjct: 63  QRNMENTQPRMQQQESLLAQGTDALQRARELVVTGNNDSQTRETRGYLADELRQIRDGML 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
             AN  D  G+Y+F+G  S  +P 
Sbjct: 123 DIANTKDPNGEYIFAGTKSQNQPF 146


>gi|238028841|ref|YP_002913072.1| flagellar hook-associated protein FlgL [Burkholderia glumae BGR1]
 gi|237878035|gb|ACR30368.1| Flagellar hook-associated protein 3 [Burkholderia glumae BGR1]
          Length = 409

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 56/406 (13%), Positives = 125/406 (30%), Gaps = 54/406 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS  + +   L         +L++++ +G +              ++       +A+ 
Sbjct: 3   ISTSQFYTQNIELMNNQQSQLSELYQQVASGNTLLTAADDPLGAAQAVQLSASSATLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S     L      LSS+  ++  ++  L   + G   ++     A  L+   ++ +
Sbjct: 63  SSNQSSALSSLQLEDKTLSSVTNVLNAVIPSLSGAINGTLSDSDRSALAAQLQGQRDTLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFT----------------KDSLAKKSFDQMLQG 168
             AN TD  G YLF+G+ S  +P     +                 DS++    D   + 
Sbjct: 123 QLANTTDGTGNYLFAGLQSGNQPFTNSPSGGVMFSGDTGQRTVQLSDSVSVAIGDSGARV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNW--------SNASDH 220
           F    +   L+      S+     +           +++  +   +           +D+
Sbjct: 183 FTSVPALGSLSVPASNPSNTGTGTIGVITGGTPGDPTNNHAFTVTFGGTTGAPTYTVTDN 242

Query: 221 NIKYRIKDTEGIDVSANVNMRGIRDI-----------------------------MFVAV 251
                   T     + +    G + +                               +A 
Sbjct: 243 ATTPPTVGTAQTYTAGSAISIGSQSMIISGNPAPGDSFTLTPATQAGGDMIGALDAAIAA 302

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
           +     S        N      L+ +Q  ++ +   +A +G  E+ +   +      +  
Sbjct: 303 LKQPVGSGAAAGATLNNALSTALTKMQNAVANVTTVQASVGGREQEVKSMQTITSTNSLQ 362

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           I   ++         A  QL  + N +  +    +K+Q LS+  YL
Sbjct: 363 ITNSLTDLTQANMPAAITQLLQVQNSLTAAQQAFSKVQGLSLFQYL 408


>gi|330863343|emb|CBX73466.1| hypothetical protein YEW_ES20610 [Yersinia enterocolitica W22703]
          Length = 259

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 103/309 (33%), Gaps = 53/309 (17%)

Query: 51  SILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKF 110
            +++ E  K+ + +   +   ++   S  +A L S++  +  +   L+    G     + 
Sbjct: 2   QLVQLENSKSDVNQYKTNVVRLSGNYSVQEASLKSLEGQLLVVRDKLLAAKNGNHSATES 61

Query: 111 PINAGMLRDSYESFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF 169
                 +    +  ++  N    EG YLF+G  ++ +P+          K +     +G 
Sbjct: 62  ATFGREINLLLDGMMSDLNTKNSEGNYLFAGTKTNIEPVE-------YNKTTQTYTFKG- 113

Query: 170 LEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDT 229
                 +      +  + +  Q+ TD                                  
Sbjct: 114 ------NNERRDAVVGNGITLQENTD---------------------------------- 133

Query: 230 EGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
             +  S + +   +  +  +  +  + +  ++   A N      L+ ++ G   I     
Sbjct: 134 --LSSSLSASGNNLEILTNLKKLANKMIDSSIKPAAYNQEISDNLAAIEIGAKKIGGMLT 191

Query: 290 VLGISEKNINEERVFLQNKNNIIDTYIS-KSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
            LG  +  +      L +   I++  +      ++    ++ + +     ++++ +  K+
Sbjct: 192 DLGAKQNRLEH-LSNLHDDVEIVNANLEKDLAEIDILQVNSAMQSNFLSTKIAHSMQAKI 250

Query: 349 QKLSILNYL 357
            +LS+ NY+
Sbjct: 251 SQLSLFNYI 259


>gi|104782835|ref|YP_609333.1| flagellar hook-associated protein FlgL [Pseudomonas entomophila
           L48]
 gi|95111822|emb|CAK16546.1| flagellar hook-associated protein FlgL [Pseudomonas entomophila
           L48]
          Length = 522

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS  +   +   +    ++VK  E+   G               +L+ EQ++N + + 
Sbjct: 3   ISTSQFYNTSSANYQRGLANTVKSQEQSSDGIRVRTAADDPVGAARLLQLEQQQNMLDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + V   L TS+A L+S+  ++Q +    V        +     NA  L    E   
Sbjct: 63  KGNITNVRNALGTSEATLNSIGAVLQRVNELAVTSGNAGFTDADRKANASELAALEEQLF 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
           +  N  D  G+YLFSG     +P
Sbjct: 123 SLMNSKDENGKYLFSGSKGDTQP 145



 Score = 37.4 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 32/88 (36%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
               +  V    + +    + +G   + ++ +    +  +       S    V+  T   
Sbjct: 435 LDSAIGNVASATNQVASSISSIGGRGQALDIQAETNEALSTENTKTQSSIREVDPATVML 494

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           +L    N ++ S     K+  LS++NY+
Sbjct: 495 RLQMQTNMLQASMQSFAKISGLSLVNYI 522


>gi|192360249|ref|YP_001982393.1| flagellar hook-associated protein type 3 FlgL [Cellvibrio japonicus
           Ueda107]
 gi|190686414|gb|ACE84092.1| flagellar hook-associated protein type 3 FlgL [Cellvibrio japonicus
           Ueda107]
          Length = 529

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 2/147 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS I+    +   +      K+ E+M TG+            T+IL+  QE     + 
Sbjct: 3   VSTSQIYNIATLGISQAQSSVTKIQEQMATGKKVLSPADDPVAATTILQLNQELARTEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVG-PLVILLEGKTDNNKFPINAGMLRDSYESF 124
             +  +    L+  ++ L ++  +VQ M    +            +   A  +    +  
Sbjct: 63  KKNIDIAENNLNLEESSLQTIVSLVQRMRQIAVSAGNTAVLTQADYAAYAAEVEARMDEL 122

Query: 125 VTFANM-TDEGQYLFSGINSSEKPLNG 150
           +   N     GQY+F+G  SS KP   
Sbjct: 123 LNLQNTRNASGQYIFAGYQSSTKPFTS 149



 Score = 36.2 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 38/111 (34%)

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
           +   A    E      +      L  K L+ ++  ++ +   +  +G     +   R   
Sbjct: 418 LSRFAQAMREVKDSPESKEKLAELVAKTLTNLESAITNLAAVQGDVGARLNTLESSRDLN 477

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
            +      T +S    ++   A  QLS     +  +     K+ +LS+ +Y
Sbjct: 478 LDVTLTTKTVLSSLQDLDYAEASIQLSMQSFVLSAAQQSFVKVSQLSLFSY 528


>gi|258621056|ref|ZP_05716090.1| Flagellar hook-associated protein 3 [Vibrio mimicus VM573]
 gi|262166275|ref|ZP_06034012.1| flagellar hook-associated protein FlgL [Vibrio mimicus VM223]
 gi|262170832|ref|ZP_06038510.1| flagellar hook-associated protein FlgL [Vibrio mimicus MB-451]
 gi|258586444|gb|EEW11159.1| Flagellar hook-associated protein 3 [Vibrio mimicus VM573]
 gi|261891908|gb|EEY37894.1| flagellar hook-associated protein FlgL [Vibrio mimicus MB-451]
 gi|262025991|gb|EEY44659.1| flagellar hook-associated protein FlgL [Vibrio mimicus VM223]
          Length = 397

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/404 (12%), Positives = 128/404 (31%), Gaps = 63/404 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q++  
Sbjct: 5   ISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLA----THYIQNVGQQEEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + L +  LV  RL   +  +S+ ++        ++ ++ G          A +L++  
Sbjct: 61  LRQYLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYFTK-----------DSL 157
            +F+  AN+ D  G Y+F+G     +P             + Y  K           ++ 
Sbjct: 121 SNFLNLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGDDYQRKMKISNSLEIPFNNP 180

Query: 158 AKKSFDQMLQGFLEENS--------------KSLLAGQHLEVSSMNAQQMTDFIKQLEDK 203
             K F ++   +                      L         +    M D     + +
Sbjct: 181 GSKVFMEIPNPYGSYEPNYTLQEGSELLLERAVNLNPDDTSSYRITFVDMPDGKNGYQLE 240

Query: 204 FSDDEYWANNWSNAS-------DHNIKYRIKDTEGIDVS---ANVNMRGIRDIMFVAVIG 253
            +     A  +   +       +  +K +I   + ID++           RD +  A   
Sbjct: 241 RNGSVVQAGEFDPKTGIQFEELNIQVKGQITKGDAIDLTPRDTFSVFDTFRDAIRYA--- 297

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
                 +++D +      +++         + + R  +G     ++ +    ++    + 
Sbjct: 298 ----EGSVSDASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKISLA 353

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              S    ++   A  + +     ++ S     K + L++ NY+
Sbjct: 354 KSKSTFEDLDYAEAVIEFNENSRALDASQKAFGKTKDLTLFNYI 397


>gi|332284026|ref|YP_004415937.1| flagellar hook-associated protein 3 [Pusillimonas sp. T7-7]
 gi|330427979|gb|AEC19313.1| flagellar hook-associated protein 3 [Pusillimonas sp. T7-7]
          Length = 412

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 57/415 (13%), Positives = 130/415 (31%), Gaps = 67/415 (16%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWE 56
           M+ +  ST      +N +  +   D + L++++ +GQ     +D  L         +   
Sbjct: 1   MRIS--STLFFQTGLNSIHAQ-QSDLMHLYQQIGSGQRMVTPADDPLA----AAQAINIS 53

Query: 57  QEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGM 116
           Q ++       + S++++ L   +  L+S+  ++QD+   L+    G   +      + +
Sbjct: 54  QSQSLNQRFAENRSVLSQNLGIEENTLNSVTTLLQDVKTRLIEAGNGTMSDADRATLSNV 113

Query: 117 LRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFT--------------KDSLAKKS 161
           L ++  S +  AN TD  GQYLFSG   + KP                     D   + +
Sbjct: 114 LANARTSLLGLANATDGSGQYLFSGAQGNVKPFQEGANGIEYLGDQYQRNIQADQTRRIA 173

Query: 162 FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLED-----------KFSDDEYW 210
              +        +            +     +       +             F+    +
Sbjct: 174 GGDVGTDVFNRAAPGSTGYLSRAEGANTGTAVVGSPAITDPRGEGVGYIYTIAFTSGADY 233

Query: 211 ANNWSNASDHNI------------KYRIKDTEGIDVSANVNMRGIRDIMFVAV------- 251
             + ++A ++ +               +    G+ V+ + +       +   V       
Sbjct: 234 TVSITDAQNNLVSEYDGTGYVAGSTDHLDLQGGVQVAISGSPASGDKFVLEPVSATTDLN 293

Query: 252 -------IGTEFLSKNLTDGA----RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                  I         +D              +  +    + ++  RA +G     I+ 
Sbjct: 294 IFNTLDSIIASLGDPTQSDAVNVAKFQNTLGSAIQRIDVNYNNVLTVRASVGARMNEIDA 353

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                  +       +SK   V+ ++A AQL      +E + +   K+Q   + N
Sbjct: 354 LDANGMQRALSYSNQLSKMEDVDYYSATAQLQLRTAALEAASLAFRKIQATGLFN 408


>gi|254502144|ref|ZP_05114295.1| hypothetical protein SADFL11_2182 [Labrenzia alexandrii DFL-11]
 gi|222438215|gb|EEE44894.1| hypothetical protein SADFL11_2182 [Labrenzia alexandrii DFL-11]
          Length = 493

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 10/211 (4%)

Query: 153 TKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWAN 212
           T  +  K + D              +  +        A  +T         ++       
Sbjct: 286 TAQTTLKAASDIWASDEFFSTYNGEVPQRIDGPPYTTATALTSGATDTLSWYTGRNTTTT 345

Query: 213 NWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF---LSKNLTDGARNVL 269
           +    +D N    I     ++     N   +++++                L +   N L
Sbjct: 346 D--PRTDKNAI--IDTNLTVEYGVRANEEPLQELVQTLATFAAADFSGGAQLDEEYYNAL 401

Query: 270 TKKMLSTV---QQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
           +  + + +       SGI++    + I+ +  +          N  +  I +  G++Q  
Sbjct: 402 STDLRAILQPPGIDQSGIVDISTDIAIAHRTASLTDQRHIQVVNTYEATIGEIEGIDQDR 461

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             A++  L   IE+SY  ++ +  LS+ +YL
Sbjct: 462 LAAEILQLRTNIEVSYNASSIVFNLSLADYL 492



 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 50/173 (28%), Gaps = 3/173 (1%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
              LN    +   ++ +G+       +G R    ++  Q+ + I     + ++    L  
Sbjct: 1   MLNLNDKLTEKTTQLASGKVGSTYGDIGDRRLLDIQLTQKVSLIESYQETITISNLHLEA 60

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
               L  ++ I +D    +         + +               +   N    G Y F
Sbjct: 61  MTVSLDRLEDIRRDAKSAMDTNDFVIQSDGQ-TQTQSRAELLLNEALNILNTEVAGYYPF 119

Query: 139 SGINSSEKPLN--GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN 189
            G ++   P+         +         +  F + N  +L  G+    +   
Sbjct: 120 GGTDAISDPVQAIDTIMNGANGLSGLKDYMSEFSQANLGALNNGRMTVSALTT 172


>gi|78777235|ref|YP_393550.1| putative flagellin [Sulfurimonas denitrificans DSM 1251]
 gi|78497775|gb|ABB44315.1| putative flagellin [Sulfurimonas denitrificans DSM 1251]
          Length = 701

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 75/224 (33%), Gaps = 6/224 (2%)

Query: 20  KELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTS 79
             L++    +++++ +G    Y  +     T  +  + E   + +   S     K  + +
Sbjct: 18  SRLSQSLFDVNKQIASGLKIQYAQEDIRAFTETMRLDNEITTLDQSKKSTVSAMKFSNQT 77

Query: 80  QAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
            + L+     +      LV     G          A  LR     F + AN +  GQYLF
Sbjct: 78  DSVLNEFALSMDRARVLLVKASNSGVNSEASLDAIAYELRGLETHFKSLANTSINGQYLF 137

Query: 139 SGINSSEKPLNG---YFTKDSLAKK-SFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           SG     KP+     Y   D++ K  +     Q +     +     +      +    + 
Sbjct: 138 SGSAIDTKPIADDGTYNGNDAILKAFTGSGTSQQYNISGQELFFGEKQSTRREITTNVIQ 197

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEG-IDVSAN 237
             +      F+D     +     S   I+  + DT+  IDV  N
Sbjct: 198 LNLSSKYPDFTDAAVEGDTKYLKSSDTIRDLMGDTDNFIDVGTN 241



 Score = 43.5 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 39/96 (40%)

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
           +  AR++  +  ++ + +    +    + +G     +++    ++       T  S  I 
Sbjct: 606 SGDARSIGIENAIAMIDELHEHVTRSHSQVGAQTNALSKSLERVEMLKMSSMTLRSSVID 665

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +   AH  L+ L    +       K+ KLS++NYL
Sbjct: 666 TDMAEAHLTLAQLNTNYQAMLSTVGKISKLSLVNYL 701


>gi|302387757|ref|YP_003823579.1| Flagellin and related hook-associated protein-like protein
           [Clostridium saccharolyticum WM1]
 gi|302198385|gb|ADL05956.1| Flagellin and related hook-associated protein-like protein
           [Clostridium saccharolyticum WM1]
          Length = 337

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 114/356 (32%), Gaps = 26/356 (7%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+T++I             +       ++T +S +   +         +  ++   I + 
Sbjct: 3   ITTNAILRDYKSNLAATIDNLNLSRTRVMTQRSFNSVAEDPGSAARASQLHRKYYKIQDN 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGP--LVILLEGKTDNNKFPINAGMLRDSYES 123
           L   + +  R    +  L+ +  +V+ +     +  +   K         A  +R   +S
Sbjct: 63  LSMLTDIQSRQDGQEGALTQVSNMVKTISEDYNVQAMSGDKQTPETRQTFAAAIRQYQKS 122

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
            V   N T E  +LF+G +    P           + S D     +   N  + +     
Sbjct: 123 MVLSLNSTYEDTFLFAGSDGKNAPF----------ELSADGKTLTYRGINVDAPMNTS-- 170

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           + +S+           L    S DE      S+A +      I       +    +  G+
Sbjct: 171 DYASLTNLSNEKLYVDLGMGLSLDEADQVVPSSAFN------ISLPGIKAIGYGQDKNGM 224

Query: 244 RD--IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
            +  ++    +     +KN    A   L  K        L+GI      LG+  + +   
Sbjct: 225 SNNVVVLAGQLVEALEAKNFDADAYGKLMNKFKDLSTNILNGIT----DLGVKSEFLTTT 280

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  L++ +  I   + K  G++   A             +  + T +   S ++++
Sbjct: 281 KDRLEDADISIQEQMQKVEGIDPAAAITDYMWNQYAYNAALKVGTSILSPSFIDFM 336


>gi|323490136|ref|ZP_08095356.1| flagellar hook-associated protein FlgL [Planococcus donghaensis
           MPA1U2]
 gi|323396184|gb|EGA89010.1| flagellar hook-associated protein FlgL [Planococcus donghaensis
           MPA1U2]
          Length = 293

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 38/84 (45%)

Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
           +S V   +  ++   A  G  +  +      L + N  + + +S+   V+   A  +L +
Sbjct: 209 VSKVDAAIDRLLSVGAENGARQNRVEAVENRLLDSNLELQSMLSRVEDVDYAEAVIRLKS 268

Query: 334 LINKIEMSYMITTKLQKLSILNYL 357
             +  + S   T+K+ + S++++L
Sbjct: 269 EESVYQASLAATSKIIQPSLMDFL 292


>gi|257484938|ref|ZP_05638979.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 255

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  +E  N   +    + +K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFYESTNTNYQRTYSNVLKTSEEVSSGIKLNTASDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   +  S+  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ASNIGTINTNIVNSETALTSIVDTMQTAREVIVSAGNGAYTDSDRLAKAAELKQYQSQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+F+G  SS  P
Sbjct: 123 GLMNSQDSNGQYIFAGSKSSAPP 145


>gi|167835121|ref|ZP_02462004.1| flagellar hook-associated protein FlgL [Burkholderia thailandensis
           MSMB43]
          Length = 410

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/406 (12%), Positives = 120/406 (29%), Gaps = 54/406 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS+S ++     +  +      +L++++ +G S              ++       +++ 
Sbjct: 3   ISSSQLYSLNVDMMNDQQAQIAQLYQQVSSGVSLTTPADNPIAAAQAVQLSATSATLSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++V   L T    L+S+  ++      ++   +G   ++     A  ++ S +  +
Sbjct: 63  TQNQTIVQTALQTEDTTLTSVNDVLNAAYQAIMHAGDGGLSDSDRAALAAQIQGSRDHLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLN-----------GYFT-----KDSLAKKSFDQMLQG 168
           T AN  D  G YLF+G   + +P +            Y        D+      D     
Sbjct: 123 TLANTADGAGNYLFAGFQPTTQPFSNKPGGGVTYAGDYGARTVQIADTRTVPQGDNGASV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDF-IKQLEDKFSDDEYWANNWSNA-------SDH 220
           F+       L       S+     +    I    D  +  ++       A       +D+
Sbjct: 183 FMSVPFLGSLPVPAAGASNTGTGTIGAVSITNPSDPTNTHQFTITFGGTAAAPTYTVTDN 242

Query: 221 NIKYRIKD--------------TEGIDVS-----------ANVNMRGIRDIMFVAVIGTE 255
            +                     + + VS                 G      +  +   
Sbjct: 243 TVTSPTPPVAQPYSPGEGIDLGGQTVAVSGTPAAGDTFTVTPAPQAGTDVFATLDTVIAA 302

Query: 256 F----LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
                 +      A         + +   ++ ++  +A +G   + +   +      +  
Sbjct: 303 LKTPVGNSPTASTALTNTMATASTKLMNTMTNVLTVQASVGGRLQEVKAMQAVTTTNSLQ 362

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +S         A +Q   L N +  +     ++Q LS+  YL
Sbjct: 363 TTNSLSNLTDTNLPAAISQFLQLQNSLSAAQKAFVQMQNLSLFQYL 408


>gi|168333625|ref|ZP_02691885.1| flagellar hook-associated protein FlgL [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 381

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/339 (10%), Positives = 104/339 (30%), Gaps = 35/339 (10%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
               L+   +     +   +       +  S   +S+M++I++++   L     G     
Sbjct: 48  AGRSLKLRIDVTEAEQYEQNTKEAMSWMEISDGAISNMEEILKEVKTRLNQASTGALTQE 107

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLA---------- 158
                   +    E      N +  G+++FSG    +       T  +            
Sbjct: 108 DKEKILSDILQLSEQIKDELNTSYAGRFVFSGHKIDQPVYYDVDTTLAKNITSSIDIQLS 167

Query: 159 ---KKSFDQMLQGFLEENSKSLLAGQHLEVSS--------MNAQQM---TDFI--KQLED 202
              K   + +         K+   G     +          N  ++     FI    +  
Sbjct: 168 EDMKVGINGLTLTSPMVVPKATTLGGTPYAAGEEVPANTIFNPGEVVPKGSFIPKGTVFT 227

Query: 203 KFSDDEYWANN---WSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFV-AVIGTEFLS 258
             ++      N     N +D +I+Y I     +++    N   + DI         + + 
Sbjct: 228 AETEIPASTANPDVVGNTADQDIRYEIGVGIELEI----NETHLSDIFVGNYEKVVDNIV 283

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
           + +       L   ++  + +  S + E+ A  G  +  +   +  +          +S+
Sbjct: 284 EAVEMDDIERL-SALIEDIDKTRSALSERMADGGSRQVRLELTQRKMAEDQVTFTELLSE 342

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  V+      + +  +   + +   ++++   ++ +Y+
Sbjct: 343 TEDVDIEEIFVEFNAQMMVYQSALKASSQVVMNTLADYI 381


>gi|217076646|ref|YP_002334362.1| flagellar hook-associated protein 3 [Thermosipho africanus TCF52B]
 gi|217036499|gb|ACJ75021.1| flagellar hook-associated protein 3 [Thermosipho africanus TCF52B]
          Length = 295

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 97/305 (31%), Gaps = 22/305 (7%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   I ER     +       KLH+++ +G+   Y        T           + + 
Sbjct: 3   ITNGMINERTLFNIQHSLYRISKLHDKLSSGKEVSYPSDDAVVATRASNISSRMRELKQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       ++   + +  +  +   +   +V    G  D  +    A  L    E   
Sbjct: 63  KRNVEHTQNFVNIYDSTIQELTNVYHRIKELIVRGANGTNDAAEREAIASELEKLKEHLE 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNG---YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
             AN    G+Y+F G  S  KP+         D+  K+  + M  GF  E   ++     
Sbjct: 123 DIANTQLGGEYIFGGARSDLKPVENGKIQTPPDANIKRKVNAM--GFTIEYGVTVYDVFK 180

Query: 183 LEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242
           LE    N +     I    +   +    +   SN +   +      T  +      N R 
Sbjct: 181 LE----NGKDAFTVIDDAINALREGN--SLKLSNITLKEVNLLESSTMEVFAQIGANSRT 234

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
           +  +         F+++ L+      LT        + L+ +  Q++VL   +  +    
Sbjct: 235 LELVSSRLTDIDTFMTEYLSKEQDADLT--------KVLTDLSMQQSVL---QAALKSAA 283

Query: 303 VFLQN 307
             LQ 
Sbjct: 284 QVLQK 288


>gi|90418382|ref|ZP_01226294.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90338054|gb|EAS51705.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 325

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 107/353 (30%), Gaps = 41/353 (11%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T+            +N +  +    + TG          A  +       +   + 
Sbjct: 2   TSINTNVSAMTALQSLSMINNNLDETQNRISTGYRVGAASDNAAYWSIATTMRSDNKALG 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+   + +   +V ++   LV   E   D NK       L++   S
Sbjct: 62  AVEDALGLGQAKVDTAYTGMKAAIDVVDEIKTKLVAAREPGVDRNKIQSEIAELKNQLTS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A  +  G+   + +N     +       S  + S   +  G +  ++ ++    + 
Sbjct: 122 ISESA--SFSGE---NWLNFDGAAVT-KNVVASFNRSSAGAVSVGTIAIDASAVKLIGNN 175

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEG-IDVSANVNMRG 242
                      D I   +    DD                 +I      ID+S  V  + 
Sbjct: 176 GAGVPTPAD-DDGILNKDALIGDDA---------------TKIAGNVMDIDISTAVLNQA 219

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
                              T      +   M+S V   L  +    + LG ++  +N + 
Sbjct: 220 ------------AVDGAYTTAETVETVIDAMISNVDTALKSMTTAASNLGAAQSRMNIQS 267

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
            F+ N  + I+  +   +  +      +L  L  + ++       +Q LSI N
Sbjct: 268 EFVSNLRDSIEKGVGTLVDADMTEESTRLKALQTQQQLG------VQALSIAN 314


>gi|322435944|ref|YP_004218156.1| flagellar hook-associated protein 3 [Acidobacterium sp. MP5ACTX9]
 gi|321163671|gb|ADW69376.1| flagellar hook-associated protein 3 [Acidobacterium sp. MP5ACTX9]
          Length = 300

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 76/309 (24%), Gaps = 55/309 (17%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
           V   +      +       +++     L  + + L  +   V   +   V    G    +
Sbjct: 45  VAQNVLLASSISKADSFTQTSTREQAVLQATDSALGEVVSNVTSAITLSVQANAGTLSAS 104

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQG 168
                   L    +  V+ AN    G YLF G      P                     
Sbjct: 105 NLKSIGEQLSGIRDQVVSLANTGYLGTYLFGGSQGGTPPFT-----------------LA 147

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
              + +     G  +  S +   Q    +               +   A +  +      
Sbjct: 148 TSTDPATVTYNGDSVTQSVVTPDQQKIQVNLPGSAIFQASG--ADLLGALNQVV------ 199

Query: 229 TEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
                                          ++++GA         + +   L  +  QR
Sbjct: 200 ------------------------------SDVSNGASGTALASDTAALTTALGNVTSQR 229

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           AVLG S   +     +   +   +    S  +  +       L+T   +      +   L
Sbjct: 230 AVLGSSLSRLTSTTTYSNTQEAQLTAQQSTLLSSDTAAVATGLTTAETQHTALLNVIAGL 289

Query: 349 QKLSILNYL 357
            K ++ +YL
Sbjct: 290 DKTNLFDYL 298


>gi|227112528|ref|ZP_03826184.1| flagellar hook-associated protein FlgL [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 317

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/349 (14%), Positives = 115/349 (32%), Gaps = 39/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++             K  E++ +G+             S +   Q ++   + 
Sbjct: 3   LSTSMMYQQNMQGIINGQATWQKTGEQLSSGKRVVNPSDDPIAAASAIMLGQAQSENGQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +   + +S  ++ LS     +   +   VI   G  +++     A  LR      +
Sbjct: 63  TLARTFAKQSMSLEESILSKSTNTISSALTE-VIKGGGVLNDDDRKSVATALRGMKAELL 121

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G Y+FSG ++ + P          A  ++    Q   +         +   
Sbjct: 122 NMANSTDGNGNYIFSGYDTDKVPFVD-----GGAGIAYQGGYQAISQ---------RVDA 167

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
              M    +      + +  + D     + S  SD          E +D++       + 
Sbjct: 168 ARDMTVSHVGS---TVFNGVTGDAKKEPDGSVQSD--------LFETLDIAIKALETPL- 215

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                        + + T  +     +     +    + I   RA LGI    I+     
Sbjct: 216 -----------DGANDATKASVAAALETANRGLNNSFNNISAVRAELGIQLNEIDNLDAV 264

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++++    T +S+    + + A +      + ++ SY     +Q +S+
Sbjct: 265 GKDRDVANKTALSQLQDTDWYEAISSYIMQQSSLQASYTAFQNMQGMSL 313


>gi|209547939|ref|YP_002279856.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533695|gb|ACI53630.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 320

 Score = 50.5 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 103/334 (30%), Gaps = 38/334 (11%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           TS+       + + +NK++ +  +++ +G   +      +  +       +  ++     
Sbjct: 6   TSAAAVNALAVLRSINKEASQTQQQVSSGYRIETAADDASYWSVATVMRSDSTNLGTIGD 65

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           +  L   ++  +   ++S   ++  +   LV   E  TD +K        +   ++ V  
Sbjct: 66  ALGLGAAKVDATYTAMNSAIDLMGQIRAKLVAAREPGTDKDKINAEIDEYKQQLQTIVES 125

Query: 128 ANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSS 187
              +  G+      N++  P             SF +   G  +  +    + Q + V  
Sbjct: 126 --TSFAGENWLLNGNTTAPP-------TWSVISSFVRAPTGEYQARTIDFPSSQTILVDK 176

Query: 188 MNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM 247
            NA                       ++ A D N       T       N N        
Sbjct: 177 NNAS-------------------GGLFTKAVDANAINNSGATARNYYLLNANS------- 210

Query: 248 FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN 307
                        +     +     ML      LS +    A +G+ +  I+++  +  +
Sbjct: 211 ---TTPATGTEIAIDKNTTDAQLTDMLDVTDSLLSSLTTTAASIGVMKTRIDDQIDYTAD 267

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
            ++ ID  +   +  +   A  +   +  + +M+
Sbjct: 268 LSDSIDKSVGALVDTDMDEASIRQKAIETQKQMA 301


>gi|239817150|ref|YP_002946060.1| flagellar hook-associated protein FlgL [Variovorax paradoxus S110]
 gi|239803727|gb|ACS20794.1| flagellar hook-associated protein 3 [Variovorax paradoxus S110]
          Length = 403

 Score = 50.5 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 102/358 (28%), Gaps = 49/358 (13%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
               L   Q     A+   S S     LS  +  L S   I+Q+M    V    G   + 
Sbjct: 46  AARALGVSQSMAESAQYATSRSRAMLSLSQEETALKSATSIMQNMKTLAVQAGNGTLSDA 105

Query: 109 KFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNG----------------- 150
                A  L+ + +  V  AN  D  GQ+LF+G  S  +P                    
Sbjct: 106 DRASLATTLQGNLDQLVNVANADDGNGQFLFAGFKSGSQPFVAGAAGGIQYMGDQGQRLM 165

Query: 151 --------YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLED 202
                     T D  +     Q   G++     +           +      ++ K    
Sbjct: 166 QVDVSRQMSTTDDGRSVFQSVQGGAGYVSSAGAANTGSGVFGAVGVTDAGAANYGKDFVI 225

Query: 203 KFSDDEYWANNWSN----ASDH---------------NIKYRIKDTEGIDVSA--NVNMR 241
            FS   Y           A+                  +     D +   V+   N    
Sbjct: 226 SFSGGNYTVATQETPPVVAASGAYVPGAAISFGGLQITMSGAPADGDTFQVATARNAGTD 285

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKML--STVQQGLSGIIEQRAVLGISEKNIN 299
               I  +     + L+ N      ++L         +      ++   + +G     I+
Sbjct: 286 VFAAIGELVTALRQPLAGNGDSAKADLLNALSTFNVKITHAHDNVLTVMSSIGSRMNEID 345

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                  ++      Y+S+ + ++  +A ++       ++ +     +L  +++ NYL
Sbjct: 346 ALDTSGASRGLTDKAYLSELVDLDPASAISEFLQRQTSLQATQQTFARLHSIALFNYL 403


>gi|322832571|ref|YP_004212598.1| flagellar hook-associated protein 3 [Rahnella sp. Y9602]
 gi|321167772|gb|ADW73471.1| flagellar hook-associated protein 3 [Rahnella sp. Y9602]
          Length = 320

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 111/349 (31%), Gaps = 37/349 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ I+ +      +          ++ TG             +  +   Q ++  ++ 
Sbjct: 3   LSTNMIYNQNMNAVLDGQNRFQATGLQLSTGSKVSKPSDDPLAASQAVLVRQAQSENSQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +   + +S  ++ LSS+   +QD    +V   +G   ++     A  L       V
Sbjct: 63  SVARTFANQSMSQEESILSSVTSTIQDAQTLIVQAGDGSLSDDDRSSLATKLDSLKSQLV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+++F+G  S   P     T  ++        +   ++ +    +      
Sbjct: 123 NLANSTDGNGRFIFAGYKSDTPPYTQDATTGAVTYSGGTTSITQQVDTSRTMTINHTG-- 180

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
                         Q+ +  + D     + S +                          +
Sbjct: 181 -------------NQIFNALTGDAKAEPDGSPSES---------------------DLFK 206

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
            I           + N TD        K    +   L+ ++  R+ LG     ++     
Sbjct: 207 TIDGALTALRTPSADNTTDTQYTDAIDKANRGLSNSLNNVLSVRSELGTQMSELDNLDTL 266

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             N++    T +S  +  E  +A +  +     ++ SY   + +Q +S+
Sbjct: 267 GDNRDVSNSTKLSNLVDTEWTSAISTYTLQQVALQASYKTYSAMQGMSL 315


>gi|150395495|ref|YP_001325962.1| flagellin domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150027010|gb|ABR59127.1| flagellin domain protein [Sinorhizobium medicae WSM419]
          Length = 321

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 109/352 (30%), Gaps = 44/352 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T+          + +N +       + +G   +      A  +       +   ++
Sbjct: 2   TSIMTNPAAMAALQTLRAINHNLETTQGRISSGYRVETAADNAAYWSIATTMRSDNAALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T  + + ++  ++ ++   LV   E   D +K       L+   +S
Sbjct: 62  TVHDALGLGAAKVDTFYSAMDTVIDVMTEIKAKLVAASEPGVDKDKINKEVAELKSQLKS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N        +    + A      ++  F      +  A   +
Sbjct: 122 AAQSAS--------FSGEN--------WLYNGAAAALGTKSIVASF------NRSADGSV 159

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            VS++N       +  + D            + A D +             S        
Sbjct: 160 AVSTLNYDTAKSVLIDVADPARGML------TKAVDAD----------ALQSTPAGTARN 203

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
             ++             +           M+S V + +S + +  A LG     I  +  
Sbjct: 204 YYLIDAGAAPAGATEIEIDSATTGAQLGDMISVVDELISQLTDSAATLGAITSRIEMQES 263

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+ N  ++ID  + + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 264 FVANLMDVIDKGVGRLVDADMNEESTRLKALQTQQQLG------IQSLSIAN 309


>gi|330818577|ref|YP_004362282.1| flagellar hook-associated protein FlgL [Burkholderia gladioli BSR3]
 gi|327370970|gb|AEA62326.1| flagellar hook-associated protein FlgL [Burkholderia gladioli BSR3]
          Length = 409

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/406 (13%), Positives = 116/406 (28%), Gaps = 54/406 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+TS  + +   L          L++++ +G                ++       +++ 
Sbjct: 3   IATSQFYTQNIELMNNQESQISTLYQQVASGNLLQTPADNPLGAAQAVQLSATSATLSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     L    + LSS+   +  +V  L   + G   ++     A  L+   ++ +
Sbjct: 63  SANQNTALSALGLEDSTLSSVTGTLNSIVSRLSSAINGTMSDSDRAALASQLQGQRDTLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFT----------------KDSLAKKSFDQMLQG 168
           + AN TD  G Y+F+G   S +P                       D+L+    D  +  
Sbjct: 123 SLANTTDGAGNYIFAGFQGSSQPFTNSPAGGVTFSGDTGQRNVQISDTLSVAQGDSGVNV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
           FL   S   L        +     +           +++  +   +   S         +
Sbjct: 183 FLSVPSTGSLPVPTGAAGNTGTGTIGAVTAGKPGDPTNNHAYTITFGGTSTAPTYTVTDN 242

Query: 229 TEGIDVSANVNMRGIRDI-------------------------------------MFVAV 251
           +     +                                                  +A 
Sbjct: 243 STTPPTTGAAQAYQAGSAIQVGSQSLVISGSPNAGDSFSLTPAPAAGADIFGALDAAIAA 302

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
           +     S      +        L+ V   L+ I   +A +G  E  +   +    +   +
Sbjct: 303 LKAPVGSDGAATASFVNSMSTALTKVNNSLANITTVQASVGGRETEVKAMQTITSSNALV 362

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +S     +  TA  QL  + N +  +    +++Q LS+  YL
Sbjct: 363 ATNSLSDLQQADMPTAITQLLQVQNALTAAQKAFSQVQNLSLFQYL 408


>gi|114330368|ref|YP_746590.1| flagellar hook-associated protein FlgL [Nitrosomonas eutropha C91]
 gi|114307382|gb|ABI58625.1| flagellar hook-associated protein 3 [Nitrosomonas eutropha C91]
          Length = 299

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST++++++      +      KL +++ +G+                E  Q      + 
Sbjct: 3   VSTNTLYDQGTRSMLQQQSSLFKLQQQLSSGKRIMTPSDDPIGAARAHELSQSLALNTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L    + L S+  ++Q +    V        +N+  + A  LR  +E  +
Sbjct: 63  ADNRYRAMDSLQQVDSTLGSVSNVIQSVRTMAVAAGNPAYSDNERQMMAVELRGHFEHLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPL 148
             AN  DE G YLFSG   + +P 
Sbjct: 123 GLANTKDEQGNYLFSGFKGNTQPF 146


>gi|158321540|ref|YP_001514047.1| flagellar hook-associated protein 3 [Alkaliphilus oremlandii
           OhILAs]
 gi|158141739|gb|ABW20051.1| flagellar hook-associated protein 3 [Alkaliphilus oremlandii
           OhILAs]
          Length = 438

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 62/166 (37%), Gaps = 3/166 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + +   M    +   +   +   E  TG+           +T +L+ + +++ +A+ 
Sbjct: 3   ITNNMMIANMTRNLQTNIRKLDRTQLEYNTGKKIHRPSDDPVGITRVLKIKSDRSELAQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTD---NNKFPINAGMLRDSYE 122
             +    +  L  ++  +  +      +V    I+++G        +       +    +
Sbjct: 63  KKNVEDASSWLENTEGAILGLVSDTGTLVRLRDIMIQGANGTLTAEQTKNIQNEVAQIKQ 122

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQG 168
             ++  N T  G Y+FSG N+ +  LN   T +    +  D+ +  
Sbjct: 123 QIISMGNTTYSGNYIFSGKNTDKPLLNADGTYNINPTQFLDKGIVD 168


>gi|238788321|ref|ZP_04632115.1| Flagellar hook-associated protein 3 [Yersinia frederiksenii ATCC
           33641]
 gi|238723567|gb|EEQ15213.1| Flagellar hook-associated protein 3 [Yersinia frederiksenii ATCC
           33641]
          Length = 333

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 112/349 (32%), Gaps = 31/349 (8%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS I+++            ++  +++ TG+            +  +   Q +    + 
Sbjct: 10  LSTSMIYQQTMQGVTNAQSLWMQSGQQLSTGKRVVNPSDDPMAASQAVMVSQSEAENGQY 69

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S   +  S     LS     +Q +   ++   +    ++     A  L+   +  +
Sbjct: 70  TLARSFARQSSSLETTVLSQATTTIQSIQSLIIGAAKDSLSDDDRASLATQLQGLKDQLL 129

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F G  S   P    F   +  + ++        ++   +        
Sbjct: 130 NQANSTDGNGRYMFGGFKSDTPP----FLVSATGEVTYAGSDTPITQKVDSNRSMTVGHT 185

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            SS+      +   + +D   D      N  N  D  +K        +          ++
Sbjct: 186 GSSVFMALTKNAKPEPDDINGDPVASETNIFNTIDTVLKS-------LKTPLQGATDDVK 238

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                 +                    K +  +   L+ ++  +A +G   + ++     
Sbjct: 239 QQASAEM-------------------DKGIRGMANSLNNVLSVQAEIGTQLQELDSLDSL 279

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++  I    +S    V+ ++A +        ++ SY   + +Q +S+
Sbjct: 280 GADRTLINKQRLSDLQDVDWNSAISSYVMQQAALQASYTTFSNMQGMSL 328


>gi|160876196|ref|YP_001555512.1| flagellar hook-associated protein FlgL [Shewanella baltica OS195]
 gi|160861718|gb|ABX50252.1| flagellar hook-associated protein 3 [Shewanella baltica OS195]
 gi|315268386|gb|ADT95239.1| flagellar hook-associated protein 3 [Shewanella baltica OS678]
          Length = 403

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 56/403 (13%), Positives = 138/403 (34%), Gaps = 53/403 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S++ +F +      +    + K+ +++ +G+  +           I    Q+   + + 
Sbjct: 3   LSSAQLFNQSITSVLQKQTATSKILDQLSSGKKVNTAGDDPVASQGIDNLNQKNALVDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +    T RL+ +++ L S + +   +   ++  + G     +  + A  ++ S E  +
Sbjct: 63  MKNIDYATNRLAVTESKLGSAEDLTGSIREQVMRAINGTLSGTERQMIADEMKGSMEELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ-----------MLQGFLEEN 173
           + AN  D  G Y+FSG ++ ++P     +       S D             +   +  +
Sbjct: 123 SIANSKDESGNYMFSGFSTDKEPFAFDNSTPPKIVYSGDSGVRNSLVQTGVAMGTNIPGD 182

Query: 174 SKSLLAGQHLEVSSMN--AQQMTDF------IKQLEDKFSDDE--YWANNWSNAS----- 218
           S  + A   L   S+N  A Q  +F      I       +D     + +N +  +     
Sbjct: 183 SAFMKAPNGLGDYSVNYLASQQGEFSVKTAKIADTATYVADTYTFNFTDNGAGGTNLQVL 242

Query: 219 ------------------------DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGT 254
                                   D  I  +    +   +     +     I    V+  
Sbjct: 243 DSANNPVANVANFDATNPVSFNGIDVKIDGKPSAGDSFTMEPQAEVSIFDTISSAIVLIE 302

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
              S N   G       ++L+ V  G++ I   R+V G + K +         +  +  +
Sbjct: 303 APNSANTPQG--RAQLAQILNNVDSGVNQISSARSVAGNNLKVVESYTETHTEEKVVNTS 360

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +S    ++  +A  +       +     + +K+  +S+ +++
Sbjct: 361 ALSLLEDLDYASAITEFEKQQLALNAVSNVFSKVGSVSLFDFI 403


>gi|222834458|gb|EEE72935.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 17/136 (12%)

Query: 23  NKDSVKLHEEMVTGQS----SDYGLQ----LGARVTSILEWEQEKNHIAERLHSNSLVTK 74
               + + +++ TG+     SD  +     LG      +       +   R  +N+ +  
Sbjct: 289 QSKLLYVQQQLGTGRRILTPSDDPVAATRALGVAQAQSVN----GQYATTRKQANASLGL 344

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-E 133
             +T Q+  +++    Q++   LV    G   +      A  L+  Y+  +  AN  D  
Sbjct: 345 EENTLQSVTTTI----QNIQSLLVNAGNGTMSDTDRASLATALQGQYDQLMGLANADDGN 400

Query: 134 GQYLFSGINSSEKPLN 149
           G YLF+G+ ++  P  
Sbjct: 401 GNYLFAGLQANTVPFA 416


>gi|320107050|ref|YP_004182640.1| flagellin domain-containing protein [Terriglobus saanensis SP1PR4]
 gi|319925571|gb|ADV82646.1| flagellin domain protein [Terriglobus saanensis SP1PR4]
          Length = 299

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 1/186 (0%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
              +      L+    K+ +EM TG                       + +   + + S 
Sbjct: 8   TNSLVASLNSLSASQQKISQEMSTGLRLTSLGDDPLAAGQNETLTSAISQMDSFVKTVSN 67

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
           V+ R+  +   LSS    + + +            + +    A  L    +S ++ AN +
Sbjct: 68  VSNRMQAADTALSSTVTALDNALSLATAGANSTLTSTQLKSLAESLTSIRDSVLSLANSS 127

Query: 132 DEGQYLFSGINSSEKPLN-GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNA 190
            +G +LF+G   S +P      T  +    S D   Q       + L             
Sbjct: 128 YQGNFLFAGTAISSQPFTLDDSTTPATVTYSGDDATQTVTSTTGQQLATSVPGSQLFGTG 187

Query: 191 QQMTDF 196
                F
Sbjct: 188 TANDVF 193


>gi|196249401|ref|ZP_03148099.1| flagellar hook-associated protein 3 [Geobacillus sp. G11MC16]
 gi|196211158|gb|EDY05919.1| flagellar hook-associated protein 3 [Geobacillus sp. G11MC16]
          Length = 297

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 67/215 (31%), Gaps = 19/215 (8%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ S +   M        +   +   ++ TG+      +        + +      + + 
Sbjct: 3   ITQSMLANNMLKQITRSYEKLDQYQTQLSTGKKITRPSEDPVVAMKGIAYRSNLAEVEQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S     +  S + L    + +Q +   +V       +  +    A  +R   E  V
Sbjct: 63  KRNFSEAYNWVENSDSALDKATQALQRIRELVVQASNDTYEETQRQAIAKEVRQLTEHLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLN---GYFTKDSLAKKSFDQMLQG-------FLEENSK 175
           T AN     +Y+F+G  ++E P+          S   +  +  L              + 
Sbjct: 123 TIANTKVGDKYIFNGAQTTEPPVTVNADGTIAVSTNDQQLNIELAKGVYIPVNIPPSTAF 182

Query: 176 SLLAGQHLEVSSM---------NAQQMTDFIKQLE 201
               G   ++  +            ++T ++ +L+
Sbjct: 183 GAGNGLFSDLQDLAASLENPSTTGDELTGYLDKLD 217



 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 43/125 (34%), Gaps = 3/125 (2%)

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQ---GLSGIIEQRAVLG 292
             VN+           + ++      +    +    ++   + +    L+ ++  RA LG
Sbjct: 172 IPVNIPPSTAFGAGNGLFSDLQDLAASLENPSTTGDELTGYLDKLDNHLTHLLGVRAELG 231

Query: 293 ISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLS 352
                I      +  +  I    +S +  V+       L T  +    +  +  ++ + +
Sbjct: 232 ARMNRIELMEDRIDGQQVIAQKVLSDNEDVDLEKVIIDLKTQESVHRAALAVGARIIQPT 291

Query: 353 ILNYL 357
           ++++L
Sbjct: 292 LVDFL 296


>gi|119899020|ref|YP_934233.1| flagellar hook-filament junction protein 3 [Azoarcus sp. BH72]
 gi|119671433|emb|CAL95346.1| flagellar hook-filament junction protein 3 [Azoarcus sp. BH72]
          Length = 420

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 9/187 (4%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IST+ I+++     ++     +   +++ TG+     +D  +         LE  Q K  
Sbjct: 3   ISTNMIYDKGVGSMQQQWSSLLHTQQQLSTGRRVLTPADDPIA----SARALEVGQSKGV 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
            ++ + +      RL+  +  L+ +   +Q +    V               A  LR  +
Sbjct: 59  NSQFMTNTGYADDRLNLLENKLTGVGDTLQYIREKTVSAGNAGYSAEDLKYIATDLRAQF 118

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +  +  AN  D  G YLFSG  ++ +P +G     S       Q +Q          L G
Sbjct: 119 DGLLALANSQDGTGDYLFSGYRANAQPFSGGLAGVSYQGDYGTQTIQVSASRYMPVSLPG 178

Query: 181 QHLEVSS 187
             +  ++
Sbjct: 179 TDVFAAT 185



 Score = 36.2 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI---IDTYISKSIGVEQHTAHAQ 330
           L+ +   L  +++ RA +G     + E    L   +++       IS  + V+  +A + 
Sbjct: 336 LTNLDGALENVLKVRAQIG---SQLTETESLLNIGSDLDVQYAETISNLVDVDYVSAISN 392

Query: 331 LSTLINKIEMSYMITTKLQKLSILNYL 357
           L+     ++ +     K+  LS+ NYL
Sbjct: 393 LTQQQTYLQAAQQSFMKVTGLSLFNYL 419


>gi|213622268|ref|ZP_03375051.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 168

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 1/160 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++E+          + +KL E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLFQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  ++ LS +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  ALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
             AN TD  G+Y+F+G  +   P +         +KS  Q
Sbjct: 123 NLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQ 162


>gi|158604969|gb|ABW74784.1| flagellar hook-associated protein [Campylobacter concisus 13826]
          Length = 771

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 34/99 (34%)

Query: 52  ILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFP 111
            +  + E   + +   +          +   L   +K +++    +V             
Sbjct: 49  AMRLDYEATTLTQVADATGKSVNFAKNTDNALKEFEKQLENFKTKVVQAASDVHSTTSLE 108

Query: 112 INAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNG 150
             A  L+      V  AN +  GQ+LFSG     KP++G
Sbjct: 109 ALANDLQGIKNHLVNIANTSINGQFLFSGSAVDTKPIDG 147



 Score = 37.8 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 37/96 (38%)

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
               RN   +  L  +   +    ++   +G   K +   +   +     + T  +  I 
Sbjct: 675 NHDPRNTGMQGALKRLDHLVDHANKELTKIGSQTKLLTSTKERAEIMKVNVLTVKNDVID 734

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +   ++ + + L    + +   + K+ +LS+LNYL
Sbjct: 735 ADYAESYLKFTQLSLSYQATLQASAKINQLSLLNYL 770


>gi|121586238|ref|ZP_01676028.1| flagellar hook-associated protein FlgL [Vibrio cholerae 2740-80]
 gi|121549504|gb|EAX59530.1| flagellar hook-associated protein FlgL [Vibrio cholerae 2740-80]
          Length = 208

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 9/148 (6%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q++  
Sbjct: 5   ISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLA----THYIQNVGQQEEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + L +  LV  RL   +  +S+ ++        ++ ++ G          A +L++  
Sbjct: 61  LRQYLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL 148
            +F+  AN+ D  G Y+F+G     +P 
Sbjct: 121 NNFINLANVQDESGNYIFAGTKPKNQPF 148


>gi|260767762|ref|ZP_05876697.1| flagellar hook-associated protein FlgL [Vibrio furnissii CIP
           102972]
 gi|260617271|gb|EEX42455.1| flagellar hook-associated protein FlgL [Vibrio furnissii CIP
           102972]
 gi|315179406|gb|ADT86320.1| flagellar hook-associated protein FlgL [Vibrio furnissii NCTC
           11218]
          Length = 397

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 123/400 (30%), Gaps = 55/400 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     +D  L        I    Q++  
Sbjct: 5   ISSFHNYQAVQNDLRRQESKIHHNQAQLASGKKLLSAADNPLA----THYIQNVSQQQEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + + +  LV  RL   +  +SS +         ++ ++ G          A  L +  
Sbjct: 61  LRQYMDAIVLVRNRLEHQEVIVSSAEDFTDKAKRNVMEMINGSLSPEDRAARARELEEIA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+  AN+ D  G Y+F+G   + +P             + Y               T 
Sbjct: 121 NNFLNLANVQDESGNYIFAGTKPTTQPFFRDNAGNVSYGGDDYQRKMKISNSLEMPFNTP 180

Query: 155 DSLAKKSFDQMLQGFLE-----ENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKF----- 204
            S      +     +       E S+ LL   +      + +    F+     KF     
Sbjct: 181 GSKLFMEIENPFGDYEPNYQLREGSELLLEKANNSNPDDDGEYKVTFVDMTNGKFGYQLE 240

Query: 205 -------SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                  +D+             ++   +K       + ++  R    +         F 
Sbjct: 241 RNGRVVDTDEFNPKTGI---QYEDLTIHVKGQLTAGDAISLTPRQSFSVFDTFKDAINFS 297

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
             +++D +     ++M          + + R  +G     ++ +     +    +    S
Sbjct: 298 KASVSDASATAKLQQMTQEFHTAFIHMNKARTDIGARLSTLDIQEEQHADFKISLAKSKS 357

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   ++   A  + +     ++ S     K + L++ NY+
Sbjct: 358 QFEDLDYAEAVIEFNENSRALQASQQAFGKTKDLTLFNYI 397


>gi|90415311|ref|ZP_01223245.1| Flagellin, N-terminus [marine gamma proteobacterium HTCC2207]
 gi|90332634|gb|EAS47804.1| Flagellin, N-terminus [marine gamma proteobacterium HTCC2207]
          Length = 307

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 104/357 (29%), Gaps = 58/357 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS IFER              L  ++ TGQ          +   I       N     
Sbjct: 3   VSTSQIFERAMTQMSNQQAKVADLQSKLATGQQIARPSDDPEKAGVIQRLSSALNRQEGF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      RL   +  L S + I+Q M    V        +    I A  +    +  +
Sbjct: 63  ESNLMAFKSRLGAEEGALKSAENILQRMRELAVQAQSDTFSSADRQIIAAEVSALRDQML 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  G Y+F+G   S  P                        EN  ++  G    
Sbjct: 123 SLANTADASGNYIFAGAMVSSAPFGE--------------------NENGDTVYQGDDSR 162

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           +    + Q    + +                              E        N  G  
Sbjct: 163 MMLDVSAQRQLSLNKP---------------------------GNEIFSSVIRENSDGSS 195

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA-VLGISEKNINEERV 303
           + +    I  +F +   ++    +            +S + E  A  L      +N    
Sbjct: 196 ERVEFFTIIDDFTAALESNDTTQMAFS------LSEISDLTETMALSLADVGGRVNTADS 249

Query: 304 FLQNKNNI---IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            L+          T +S++  ++  TA  +L++ I  +E       K+ +LS+ +Y+
Sbjct: 250 QLEALAETNLRYKTLLSQAQDLDYTTAITELTSEIMSLEAGQSSFIKIAQLSLFDYI 306


>gi|221639488|ref|YP_002525750.1| Flagellar hook-associated protein 3 [Rhodobacter sphaeroides KD131]
 gi|221160269|gb|ACM01249.1| Flagellar hook-associated protein 3 [Rhodobacter sphaeroides KD131]
          Length = 409

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 82/301 (27%), Gaps = 29/301 (9%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM 130
            +  R       L +        V     +     D       +  LR +          
Sbjct: 123 ALANRKDAMGQGLFAGYAAGPAFVKEGDAVRFAGNDGQPVAQLSETLRVA---------T 173

Query: 131 TDEGQYLFSGINSSEKPLNGYFTKD------------SLAKKSFDQMLQGFLEENSKSLL 178
           +  G  +F  + +   P + +   D            S  ++S +            +  
Sbjct: 174 SLGGAEVFMAVPTEAGPRSVFDLADDLVATLSVPLAHSSPQRSAEDA-ARLSLAAPPAPA 232

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
             +      + + ++   +        +        +   + +    +     I VS   
Sbjct: 233 TVRFTLTGPVGSVEIEQRLPGSALAAINAASAQTGVTATEEPDGTLVLGAVGRITVSDMS 292

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKM--LSTVQQGLSGIIEQRAVLGISEK 296
                RD++       +     +       L             +S + EQRA  G    
Sbjct: 293 RSDDPRDVLATFTSAEDEGGWIMP-----ALFDAASLTDAFDAAVSHMAEQRARAGALAA 347

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
           +++ +   ++ +   I T I     ++   A  +L  L+   E +     K+   S+ +Y
Sbjct: 348 SVDTQADAIKTRQTRIATAIGGLEDLDVAEAVTRLQQLLLTQEAAQQTYVKIANRSLFDY 407

Query: 357 L 357
           L
Sbjct: 408 L 408


>gi|331017017|gb|EGH97073.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 530

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  FE  N   +    + +K  +E+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFFESTNANYQRNYANVIKTGDEVTSGIKLNTASDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   +  S+  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ASNIGTINTNIVNSETALTSIVDTMQAAREVVVSAGNGAYTDSDRLAKAAELKQYQSQIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+F+G  SS  P
Sbjct: 123 GLMNSQDANGQYIFAGSKSSAPP 145


>gi|238755318|ref|ZP_04616661.1| Flagellar hook-associated protein 3 [Yersinia ruckeri ATCC 29473]
 gi|238706454|gb|EEP98828.1| Flagellar hook-associated protein 3 [Yersinia ruckeri ATCC 29473]
          Length = 322

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 86/274 (31%), Gaps = 29/274 (10%)

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFS 139
             LS +   VQ +   ++   +    ++     A  L+   +  +  AN TD  G+Y+F+
Sbjct: 72  TVLSQVTSTVQQIQTLVISASKDSLSDDDRASYATQLQGLKDQLLNQANSTDGNGRYMFA 131

Query: 140 GINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQ 199
           G  +   P        ++  K  D       + +S   +A  H       +       + 
Sbjct: 132 GFKNDTIPFVADPVTGAVTYKGGDVAQTQ--QVDSSRSMAVGHTGSGVFTSLTANSRPEP 189

Query: 200 LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSK 259
            +          +N  N  D  +K        +          ++               
Sbjct: 190 TDPVTGATPASESNIFNTIDTVLKS-------LKTPMAGASDAVKQQASAE--------- 233

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
                       K +  +   L+ ++  +A +G   + ++       ++  +    +S  
Sbjct: 234 ----------LDKGIRGLDNSLNNMLSVQAEIGTQLQELDSLDSLGSDRTLVNKQRLSDL 283

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           + V+ + A +        ++ SY   + +Q +S+
Sbjct: 284 VDVDWNAAISSYVMQQAALQASYKSFSDMQGMSL 317


>gi|268679601|ref|YP_003304032.1| flagellin domain protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617632|gb|ACZ11997.1| flagellin domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 801

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 3/193 (1%)

Query: 52  ILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFP 111
            +    E   + + + S+S      +     L+S    + +    L              
Sbjct: 49  AMRLNYEITTLEQSIESSSKAKSFANNIDTTLNSFTSKLDEFKTKLTQAANASNSQTSLE 108

Query: 112 INAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF-- 169
             A  L    E  +  AN +  GQ+LFSG   S KP++   T +  A+     +  G   
Sbjct: 109 AIANDLEAYKEELINLANTSINGQFLFSGSALSTKPISADGTYNGNAESLTAVVGSGVEL 168

Query: 170 -LEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
               + KSL  G+  + S + +  +  + +        D    +  S+         I+D
Sbjct: 169 TYNVDGKSLFLGKDSDYSKVVSTNVAMYNQTKLHPSIMDASGTDTSSSEVYLTGTDTIRD 228

Query: 229 TEGIDVSANVNMR 241
             G   S   N  
Sbjct: 229 MVGDTDSDTTNDP 241



 Score = 43.5 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 69/165 (41%), Gaps = 1/165 (0%)

Query: 193 MTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI 252
           M     + + +FS  +  A+ +   S   + +   D+  I+ S +VNM    D M  AV 
Sbjct: 638 MDKTASESKIEFSLSDSDAHTFDGTSSTALSFMANDSVTIE-SPSVNMFEQLDTMIEAVR 696

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
              F   + +   RN+  +  L+ +      + +    +G     + E +   +     +
Sbjct: 697 SGNFRMDSTSSDPRNIGIQNALAQLDHITDHVTKAHTQIGALSNALTETQARAETLKVNV 756

Query: 313 DTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            T  ++ +G++   A+ +L+ + N  E       K+  +S+L+Y+
Sbjct: 757 TTVQTEIVGIDLAEAYLELTQVSNSYEAMLSAIAKVNSMSLLDYM 801


>gi|71733470|ref|YP_275554.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289627771|ref|ZP_06460725.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651638|ref|ZP_06482981.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487848|ref|ZP_07005888.1| Flagellar hook-associated protein flgL [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554023|gb|AAZ33234.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157573|gb|EFH98653.1| Flagellar hook-associated protein flgL [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325101|gb|EFW81170.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329360|gb|EFW85353.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866431|gb|EGH01140.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986476|gb|EGH84579.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 530

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  +E  N   +    + +K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFYESTNTNYQRTYSNVLKTSEEVSSGIKLNTASDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   +  S+  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ASNIGTINTNIVNSETALTSIVDTMQTAREVIVSAGNGAYTDSDRLAKAAELKQYQSQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+F+G  SS  P
Sbjct: 123 GLMNSQDSNGQYIFAGSKSSAPP 145


>gi|296535170|ref|ZP_06897392.1| flagellin domain protein [Roseomonas cervicalis ATCC 49957]
 gi|296264498|gb|EFH10901.1| flagellin domain protein [Roseomonas cervicalis ATCC 49957]
          Length = 364

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/357 (11%), Positives = 110/357 (30%), Gaps = 28/357 (7%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  + I+ SS    +  L  ++N+      +++ TG         GA      +   + +
Sbjct: 1   MANSVITNSSAKVALQSL-NKINQQLDTTQKKVSTGYKVSDAKDDGAAYAVAQKVRADVS 59

Query: 61  HIAERLH----SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGM 116
            +          N L+T  L    A  +++   V +++  L       +D+N        
Sbjct: 60  GLNSANDQLGGVNGLLTSTLKAVDAVSTTLTSEVSNVLTKL-------SDSNLDAETRKQ 112

Query: 117 LRDSYESFVTFANM-----TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLE 171
             + ++S     N      +  G  L    ++   PL G   +    + + ++  Q +  
Sbjct: 113 YTEQFKSLTKQMNTTLQDASYNGTRLLGSTDTD--PLTGQPFEGKPMEVTRNEKGQTYTV 170

Query: 172 ENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEG 231
             S +         S             +     +   +A   + A+    +  I  +  
Sbjct: 171 NASGTTADQLSFTASIGGGASAAVPAPAVAADGPNVASFATGSNVATSS--EGAIPASGS 228

Query: 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVL 291
           +D   +++    + ++                  ++V   ++       L   +   A +
Sbjct: 229 LDSITSISAAEAKALLQGRAEVQTDPGPPPVTEMQDVDMVQIGGAGGAVLKTFVSLTAQV 288

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSI-------GVEQHTAHAQLSTLINKIEMS 341
             ++  +  +  F+ ++       I             +     A+L+ L  + +++
Sbjct: 289 NSTQNELGNDSKFISSQMTYNSARIDAMEEGLGSLVDADLAKESARLTALQTQQQLA 345


>gi|15596284|ref|NP_249778.1| flagellar hook-associated protein FlgL [Pseudomonas aeruginosa
           PAO1]
 gi|218892949|ref|YP_002441818.1| flagellar hook-associated protein FlgL [Pseudomonas aeruginosa
           LESB58]
 gi|9947003|gb|AAG04476.1|AE004539_18 flagellar hook-associated protein type 3 FlgL [Pseudomonas
           aeruginosa PAO1]
 gi|218773177|emb|CAW28989.1| flagellar hook-associated protein type 3 FlgL [Pseudomonas
           aeruginosa LESB58]
          Length = 439

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST   F            D  +   E+  G+              +L+  QE+   ++ 
Sbjct: 3   ISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L   +  L+S+  ++  +    V    G  D +     A  L    +  +
Sbjct: 63  KSGITAAKNSLQQEETILNSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
              N  D  G+YLFSG     +P 
Sbjct: 123 NLLNSRDASGKYLFSGSQGDTQPF 146



 Score = 39.7 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
            + +   +       R+ +    +S +    S I+  +  +G           F+ +   
Sbjct: 333 ALLSAEDTPAGNLAIRDAV-GVAISNLDSSNSQILTGQGRIGARMNVAESTETFIDDVTL 391

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    IS+   ++   A ++L+     ++ +     K++ LS+ NYL
Sbjct: 392 VNTAVISQIQDLDYPEALSRLTLQSTIMDAAQQSFVKIRGLSLFNYL 438


>gi|189426323|ref|YP_001953500.1| flagellar hook-associated protein 3 [Geobacter lovleyi SZ]
 gi|189422582|gb|ACD96980.1| flagellar hook-associated protein 3 [Geobacter lovleyi SZ]
          Length = 299

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/356 (10%), Positives = 105/356 (29%), Gaps = 65/356 (18%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
           T+  S  ++     +          +++E++ +G++ +           ++ +  +    
Sbjct: 8   TSQNSLYNLQNSRTL--------LDQINEKIASGKNYNRPSDDPIAARQLVNFADQLRAG 59

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
            +   + +     L  ++  L  M   + ++      L  G             L+   +
Sbjct: 60  EQYSSNMTKANTWLKVTETALEGMSATLSEIKKLTSTLTNGTDITAVRDNAVSQLKTYKQ 119

Query: 123 SFVTFANMTDEGQYLFSGI-NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
             + + N   + +Y+F+G  N+S  P NG     +      +              L   
Sbjct: 120 QLIDYGNTQLDDRYVFAGTDNASTAPFNGSTFSGNDTSIDIE--------------LNTS 165

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
             +  ++   ++      +  ++   +                     + +  + + N  
Sbjct: 166 STQAINITGGRVLKGTNGVPYQYGSTDILTEL----------------DNLITAVSTNNT 209

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                        E  +  + DGA+                 I    A +G     I   
Sbjct: 210 A----------NIEAGALKMEDGAKQ----------------IENAIADVGGRLTRIKTM 243

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + F     ++I   ++     +      +L       E +   T K+ ++S+L+Y+
Sbjct: 244 QQFNTTTKSVIQGVVANLQNADYTKLAVELQQQQLAFEATLSTTAKVSQMSLLDYM 299


>gi|327478816|gb|AEA82126.1| flagellar hook-associated protein FlgL [Pseudomonas stutzeri DSM
           4166]
          Length = 302

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 1/145 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS + I   M+      ++   KL ++M +GQ              +L  ++E+  + + 
Sbjct: 3   ISNAQITAMMHGSLNNSSEKLGKLMQQMASGQRMLVPSDDPISAVRVLRIQREEASLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + V+  LS  +A+L +    +  +   L+    G          A  L     + +
Sbjct: 63  RTNIANVSGNLSKQEANLKAASDSMLSIRDLLLWAANGSNTGEDLSAIANELESLENTVL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLN 149
           +FAN+ DE G+YLFSG  S++  + 
Sbjct: 123 SFANVRDEEGRYLFSGTRSNQPAIA 147


>gi|28869149|ref|NP_791768.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852389|gb|AAO55463.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 530

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  FE  N   +    + +K  +E+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFFESTNANYQRNYANVIKTGDEVTSGIKLNTASDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   +  S+  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ASNIGTINTNIVNSETALTSIVDTMQAAREVVVSAGNGAYTDSDRLAKAAELKQYQSQIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+F+G  SS  P
Sbjct: 123 GLMNSQDANGQYIFAGSKSSAPP 145


>gi|254234223|ref|ZP_04927546.1| flagellar hook-associated protein type 3 FlgL [Pseudomonas
           aeruginosa C3719]
 gi|126166154|gb|EAZ51665.1| flagellar hook-associated protein type 3 FlgL [Pseudomonas
           aeruginosa C3719]
          Length = 439

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST   F            D  +   E+  G+              +L+  QE+   ++ 
Sbjct: 3   ISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L   +  L+S+  ++  +    V    G  D +     A  L    +  +
Sbjct: 63  KSGITAAKNSLQQEETILNSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
              N  D  G+YLFSG     +P 
Sbjct: 123 NLLNSRDASGKYLFSGSQGDTQPF 146



 Score = 39.7 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
            + +   +       R+ +    +S +    S I+  +  +G           F+ +   
Sbjct: 333 ALLSAEDTPAGNLAIRDAV-GVAISNLDSSNSQILTGQGRIGARMNVAESTETFIDDVTL 391

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    IS+   ++   A ++L+     ++ +     K++ LS+ NYL
Sbjct: 392 VNTAVISQIQDLDYPEALSRLTLQSTIMDAAQQSFVKIRGLSLFNYL 438


>gi|307823538|ref|ZP_07653767.1| flagellar hook-associated protein 3 [Methylobacter tundripaludum
           SV96]
 gi|307735523|gb|EFO06371.1| flagellar hook-associated protein 3 [Methylobacter tundripaludum
           SV96]
          Length = 427

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 1/151 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+   +               L +++ TG               IL+ ++  +   + 
Sbjct: 3   ISTAWAQQLSVTAMSNQQSKLANLQQQLSTGVKVSVPADDPGAAARILDLDKTIDKTKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
            ++ +    RL+  ++ L++   I+       +  +    ++N        +    +   
Sbjct: 63  QNNIATTRGRLNIEESALATSGGILDRARDLTIQAMNDTLNSNDRLGIKTEVDQLIQQLA 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKD 155
             AN     G+++FSG  S+        T  
Sbjct: 123 GVANTQNANGEFIFSGDLSNVPAFTKNATTG 153


>gi|153001465|ref|YP_001367146.1| flagellar hook-associated protein FlgL [Shewanella baltica OS185]
 gi|151366083|gb|ABS09083.1| flagellar hook-associated protein 3 [Shewanella baltica OS185]
          Length = 403

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 77/186 (41%), Gaps = 1/186 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S++ +F +      +    + K+ +++ +G+  +           I    Q+   + + 
Sbjct: 3   LSSAQLFNQSITSVLQKQTATSKILDQLSSGKKVNTAGDDPVASQGIDNLNQKNALVDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +    T RL+ +++ L S + +   M   ++  + G     +  + A  ++ S E  +
Sbjct: 63  MKNIDYATNRLAVTESKLGSAEDLTGSMREQVMRAINGTLSGTERQMIADEMKGSLEELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  G Y+FSG ++ ++P     +       S D  ++  L +   ++      +
Sbjct: 123 SIANSKDESGNYMFSGFSTDKEPFAFDNSTPPKIVYSGDSGVRNSLVQTGVAMGTNIPGD 182

Query: 185 VSSMNA 190
            + M A
Sbjct: 183 SAFMKA 188


>gi|90577351|ref|ZP_01233162.1| flagellar hook-associated protein [Vibrio angustum S14]
 gi|90440437|gb|EAS65617.1| flagellar hook-associated protein [Vibrio angustum S14]
          Length = 299

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 109/307 (35%), Gaps = 57/307 (18%)

Query: 52  ILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFP 111
           +L  ++E + I++   + S V   LS+ + HL +    ++DM   L++   G   +    
Sbjct: 49  LLNLDRENSAISQYQDNISNVKTALSSQEVHLMAASDTLKDMRDTLLLASNGAISDADRE 108

Query: 112 INAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFL 170
             A  L    ++F++  N+ DE G YLFSG  S    +         A+ +   + +G  
Sbjct: 109 SYANKLVSLRDAFMSSFNVQDEEGNYLFSGTQSDVPAIT--------AQPAGGYIFEGNS 160

Query: 171 EENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
           ++   ++  G  +E ++  +Q+M D                        +NI  +I    
Sbjct: 161 DKRVVTVAKGVTIE-ANFASQEMLDL---------------------GGNNILNQIDAAI 198

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
               +   N                     L +  +  L     +T+      ++     
Sbjct: 199 TELQAPTAN---------------------LNNTLQATL-----NTLDITHDNVLAAVTD 232

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
           +G    N++       +    ++   +    ++   A  +L+  +  ++ +     K+  
Sbjct: 233 IGGRHNNLDLMETSHGDNKLFVEAVTNDLEALDYGEASVRLNNYMAALQATQASYMKIND 292

Query: 351 LSILNYL 357
           LS+ N L
Sbjct: 293 LSLFNRL 299


>gi|116049016|ref|YP_792182.1| flagellar hook-associated protein FlgL [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296390549|ref|ZP_06880024.1| flagellar hook-associated protein FlgL [Pseudomonas aeruginosa
           PAb1]
 gi|115584237|gb|ABJ10252.1| flagellar hook-associated protein type 3 FlgL [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 439

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST   F            D  +   E+  G+              +L+  QE+   ++ 
Sbjct: 3   ISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L   +  L+S+  ++  +    V    G  D +     A  L    +  +
Sbjct: 63  KSGITAAKNSLQQEETILNSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
              N  D  G+YLFSG     +P 
Sbjct: 123 NLLNSRDASGKYLFSGSQGDTQPF 146



 Score = 39.7 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
            + +   +       R+ +    +S +    S I+  +  +G           F+ +   
Sbjct: 333 ALLSAEDTPAGNLAIRDAV-GVAISNLDSSNSQILTGQGRIGARMNVAESTETFIDDVTL 391

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    IS+   ++   A ++L+     ++ +     K++ LS+ NYL
Sbjct: 392 VNTAVISQIQDLDYPEALSRLTLQSTIMDAAQQSFVKIRGLSLFNYL 438


>gi|261420581|ref|YP_003254263.1| flagellar hook-associated protein FlgL [Geobacillus sp. Y412MC61]
 gi|319768251|ref|YP_004133752.1| flagellar hook-associated protein 3 [Geobacillus sp. Y412MC52]
 gi|261377038|gb|ACX79781.1| flagellar hook-associated protein 3 [Geobacillus sp. Y412MC61]
 gi|317113117|gb|ADU95609.1| flagellar hook-associated protein 3 [Geobacillus sp. Y412MC52]
          Length = 297

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 60/196 (30%), Gaps = 10/196 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ S +             +  K   ++ TG+               + +      + + 
Sbjct: 3   ITQSMLANNTLKQITRSYANLDKYQTQLSTGKKITRPSDDPVVAMKGIAYRSNLAEVEQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S     +  S + L    + +Q +   +V       +  +    A  +R   E  V
Sbjct: 63  KRNFSEAYNWVENSDSALDKATQALQRIRELVVQASNDTYEETQRQSIAKEVRQLTEHLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLN---GYFTKDSLAKKSFDQMLQG-------FLEENSK 175
           T AN     +Y+F+G  ++E P+          S   +  +  L              + 
Sbjct: 123 TIANTKVGDKYIFNGAKTTEPPVTVNPDGTISVSTNSQQLNIELAKGIYIPVNIPPSTAF 182

Query: 176 SLLAGQHLEVSSMNAQ 191
              +G   ++ ++ A 
Sbjct: 183 GAGSGLFSDLQNLAAS 198



 Score = 44.3 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 35/84 (41%)

Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
           L  +   L+ ++  RA LG     I      + ++  I +  +S +  V+       L T
Sbjct: 213 LDKLDSHLTNLLGVRAELGARMNRIELMEDRIDSQQVIAEKMLSDNEDVDLEKVITDLKT 272

Query: 334 LINKIEMSYMITTKLQKLSILNYL 357
             +    +  +  ++ + +++++L
Sbjct: 273 QESVHRAALAVGARVIQPTLVDFL 296


>gi|154175012|ref|YP_001408167.1| lagellar hook-associated protein FlgL [Campylobacter curvus 525.92]
 gi|112802834|gb|EAU00178.1| bacterial flagellin N-terminus domain protein [Campylobacter curvus
           525.92]
          Length = 740

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 37/99 (37%)

Query: 52  ILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFP 111
            +  + E   +++ + + S        +   L   +K +++    +V             
Sbjct: 49  AMRLDYEAETLSQVVEATSKSVNFSKNTDKSLQEFEKQLENFKTKVVQAASDVHSKTSLE 108

Query: 112 INAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNG 150
             A  L+      V  AN +  GQ+LFSG     KP++G
Sbjct: 109 ALANELQGIKNHLVNIANTSINGQFLFSGSAVDTKPIDG 147



 Score = 37.4 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 33/96 (34%)

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
               RN   +  L  +   +    ++   +G   K I             + T  ++ I 
Sbjct: 645 NGDPRNTGMQGALERLDHLIDHANKELTKVGSQTKLITSTNERASLMKVNVLTVKNEVID 704

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +   A+   +      +     + K+ +LS+LNYL
Sbjct: 705 ADYAEAYLNFTQKTLSYQAMLQASAKINQLSLLNYL 740


>gi|213967574|ref|ZP_03395722.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           tomato T1]
 gi|301385721|ref|ZP_07234139.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060066|ref|ZP_07251607.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           tomato K40]
 gi|302134825|ref|ZP_07260815.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213927875|gb|EEB61422.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           tomato T1]
          Length = 530

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  FE  N   +    + +K  +E+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFFESTNANYQRNYANVIKTGDEVTSGIKLNTASDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   +  S+  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ASNIGTINTNIVNSETALTSIVDTMQAAREVVVSAGNGAYTDSDRLAKAAELKQYQSQIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+F+G  SS  P
Sbjct: 123 GLMNSQDANGQYIFAGSKSSAPP 145


>gi|330447911|ref|ZP_08311559.1| flagellar hook-associated protein 3 [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492102|dbj|GAA06056.1| flagellar hook-associated protein 3 [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 299

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 108/307 (35%), Gaps = 57/307 (18%)

Query: 52  ILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFP 111
           +L  E+E + I +   + + V   LS+ + HL +    +++M   L++   G   +    
Sbjct: 49  LLNLERENSAINQYQDNINNVKTALSSQEVHLMAASDTLKEMRDTLLLASNGAISDADRE 108

Query: 112 INAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFL 170
             A  L    ++F++  N+ DE G YLFSG  S    +         A+ +   + +G  
Sbjct: 109 SYANKLVSLRDAFMSSFNVQDEEGNYLFSGTQSDVPAIT--------AQPAGGYIFEGNS 160

Query: 171 EENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
           ++   ++  G  +E ++  +Q+M D                        +NI  +I    
Sbjct: 161 DKRVVTVAKGVTME-ANFASQEMLDL---------------------GGNNILNQIDAAI 198

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
               +   N                     L +  +  L     +T+      ++     
Sbjct: 199 TELQAPTAN---------------------LNNTLQATL-----NTLDITHDNVLAAVTD 232

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
           +G    N++       +    ++   +    ++   A  +L+  +  ++ +     K+  
Sbjct: 233 IGGRHNNLDLMETSHGDNKLFVEAVTNDLEALDYGEASVRLNNYMAALQATQASYMKIND 292

Query: 351 LSILNYL 357
           LS+ N L
Sbjct: 293 LSLFNRL 299


>gi|328470108|gb|EGF41019.1| flagellar hook-associated protein FlgL [Vibrio parahaemolyticus
           10329]
          Length = 299

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 116/355 (32%), Gaps = 65/355 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVT----GQSSDYGLQLGARVTSILEWEQEKNH 61
           IS +   + M    +  +    K+ ++M T     + SD  +        +L  E+E + 
Sbjct: 3   ISDNQFSQMMLQSLQSNSAGLGKVLQQMSTRERLTKLSDDPMA----SIKLLNLERENSA 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           IA+   + + +   LS+ + HL S+ + ++ M   ++    G   +         L+   
Sbjct: 59  IAQYQSNIANLKTTLSSQETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYR 118

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +S  +  N  DE G +LFSG  +    LN                      ++S + +  
Sbjct: 119 DSIESSFNAQDEEGHFLFSGTKTDTAALN----------------------KSSGAYVVE 156

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
            + +V  +                            A    +   +   E +D+    N+
Sbjct: 157 GNSDVRVVTV--------------------------AKGVTMDSNMTAQEILDIGGGKNV 190

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                +  +  +  EF   +             L+ +   ++ ++     +G    N++ 
Sbjct: 191 -----LNQIDALIAEFEKPSPN---FQAEVDASLNAIDDTMANVLGAMTEIGGRHNNLDL 242

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                      +D        ++   A  +LS  +  ++ +     K+  LS+ +
Sbjct: 243 MDGAHSENKLFVDKVSGDLSALDYGEASVRLSNYMAALQATQASYVKINDLSLFD 297


>gi|95929884|ref|ZP_01312625.1| flagellin-like [Desulfuromonas acetoxidans DSM 684]
 gi|95134180|gb|EAT15838.1| flagellin-like [Desulfuromonas acetoxidans DSM 684]
          Length = 641

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 40/84 (47%)

Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
           L+ ++    G+   R+++G +   I   +  ++     +   +S+   V+      +++ 
Sbjct: 558 LARLETSADGVRSSRSLMGNNAARIETSKDHMEGVLIDLQQILSRYEDVDLIDVITEITQ 617

Query: 334 LINKIEMSYMITTKLQKLSILNYL 357
               +E +  +T ++ +LSILNYL
Sbjct: 618 TETALEAALSVTGRVGQLSILNYL 641



 Score = 45.1 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK+T  +T      +N     +N     L  +  TG+  +      A +  +L    +  
Sbjct: 1   MKSTQATTF---RTLNSELNSINNQLENLRTQEATGKKLNRPSDDPAAIRPVLSARTQIR 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                + S      RL    ++L   + ++ +     +  +     +      A  +   
Sbjct: 58  ASERFISSMETSLDRLDNLDSYLDQAENLLVNAKETTINAINASMSDADMETLADSINYV 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNG 150
             S ++ AN    GQY+F+G      P   
Sbjct: 118 KTSLMSVANAQVGGQYIFAGYLEDTPPFTE 147


>gi|157959895|ref|YP_001499929.1| flagellar hook-associated protein 3 [Shewanella pealeana ATCC
           700345]
 gi|157844895|gb|ABV85394.1| flagellar hook-associated protein 3 [Shewanella pealeana ATCC
           700345]
          Length = 305

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 72/204 (35%), Gaps = 7/204 (3%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S  +++       +    D  +L+E M TG S             ++  E++     + 
Sbjct: 3   VSMHNLYANNLQSLQNSTVDIARLNEMMATGSSILRPSDDPIGAVKVMGNERDMAATEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           L +   ++     ++ ++SSM ++   M    V    G          A  L +  ESF 
Sbjct: 63  LKNTESLSSSFGRAETYMSSMVELQNRMREITVSASNGSLSAEDRTAYAAELEELLESFS 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL-----NGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
              N  D  G YLFSG  +   P+       Y  +   + +        ++  NS +   
Sbjct: 123 DVLNAKDEGGNYLFSGNETDTPPIGKDAAGNYVYQGDTSHREVQTSSSSWMTANSTAADF 182

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDK 203
                 + +   Q  DFI  LED 
Sbjct: 183 IFSNGSADI-LNQTKDFIDALEDP 205


>gi|304438223|ref|ZP_07398165.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368830|gb|EFM22513.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 444

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 5/130 (3%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKF--PINAGMLRDSYESFVTFANMTDE 133
           ++T+Q  LSSM+ I +      +       D N    P  A  ++   +  V+  N    
Sbjct: 73  MNTTQTALSSMEDIQKTFKAKTIQGANDDKDENGGDWPAIAREMKAEIQQIVSLGNTQLG 132

Query: 134 GQYLFSGINSSEKPLNGYFTKDS---LAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNA 190
            +Y+FSG     +P +             K+ D     F  + S    A    ++ S++ 
Sbjct: 133 DRYIFSGQADLRQPFSISDENKPLLRGVAKTLDDRQAAFFNDASNDKSANFLHQMISLDG 192

Query: 191 QQMTDFIKQL 200
               ++    
Sbjct: 193 SDGENYYMNT 202



 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 29/89 (32%)

Query: 269 LTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
           L+   +S         ++     G   +        L +    I   I+     +     
Sbjct: 355 LSSDGISLADAANQVTLQAHTETGARTQLYKNMTDVLTDYKENITRDITNVSSADVAELA 414

Query: 329 AQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++      + MS  +  ++  LS+++YL
Sbjct: 415 MKMMQQQTVMSMSLSMGARILPLSLVDYL 443


>gi|12057229|gb|AAB81422.2| FlaD [Sinorhizobium meliloti]
          Length = 321

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 111/352 (31%), Gaps = 44/352 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T+          + +N +       + +G   +      A  +       +   ++
Sbjct: 2   TSIMTNPAAMAALQTLRAINHNLETTQGRISSGFRVETAADNAAYWSIATTMRSDNAALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T  + + ++  ++ ++   LV   E   D +K       L+    S
Sbjct: 62  TVHDALGLGAAKVDTFYSAMDTVIDVMTEIKAKLVAASEPGVDKDKINKEVAELKSQLNS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N        +    + A      ++  F      +  A   +
Sbjct: 122 AAQSAS--------FSGEN--------WLYNGAAAALGTKSIVASF------NRSADGSV 159

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            VS++N       +  + D                   +  +  D + +  +     R  
Sbjct: 160 TVSTLNYDTAKSVLIDVTDP---------------SRGMLTKAVDADALQSTPTGTARNY 204

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
             ++             + +         M+S V + +S + +  A LG     I  +  
Sbjct: 205 -YLIDAGAAPGGATEIEIDNATTGAQLGDMISVVDELISQLTDSAATLGAITSRIEMQES 263

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+ N  ++ID  + + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 264 FVANLMDVIDKGVGRLVDADMNEESTRLKALQTQQQLG------IQSLSIAN 309


>gi|28900129|ref|NP_799784.1| flagellar hook-associated protein FlgL [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153837074|ref|ZP_01989741.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           AQ3810]
 gi|260365779|ref|ZP_05778275.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus K5030]
 gi|260880701|ref|ZP_05893056.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           AN-5034]
 gi|260897693|ref|ZP_05906189.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           Peru-466]
 gi|260899396|ref|ZP_05907791.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           AQ4037]
 gi|28808412|dbj|BAC61617.1| putative flagellar hook-associated protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149749662|gb|EDM60407.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           AQ3810]
 gi|308086236|gb|EFO35931.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           Peru-466]
 gi|308091768|gb|EFO41463.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           AN-5034]
 gi|308109256|gb|EFO46796.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           AQ4037]
 gi|308115030|gb|EFO52570.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus K5030]
          Length = 299

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 116/355 (32%), Gaps = 65/355 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVT----GQSSDYGLQLGARVTSILEWEQEKNH 61
           IS +   + M    +  +    K+ ++M T     + SD  +        +L  E+E + 
Sbjct: 3   ISDNQFSQMMLQSLQSNSAGLGKVLQQMSTRERLTKLSDDPMA----SIKLLNLERENSA 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           IA+   + + +   LS+ + HL S+ + ++ M   ++    G   +         L+   
Sbjct: 59  IAQYQSNIANLKTTLSSQETHLDSVNESLKSMRDIVLWGANGSLTDQDRSGMITELKSYR 118

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +S  +  N  DE G +LFSG  +    LN                      ++S + +  
Sbjct: 119 DSIESSFNAQDEEGHFLFSGTKTDTAALN----------------------KSSGAYVVE 156

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
            + +V  +                            A    +   +   E +D+    N+
Sbjct: 157 GNSDVRVVTV--------------------------AKGVTMDSNMTAQEILDIGGGKNV 190

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                +  +  +  EF   +             L+ +   ++ ++     +G    N++ 
Sbjct: 191 -----LNQIDALIAEFEKPSPN---FQAEVDASLNAIDDTMANVLGAMTEIGGRHNNLDL 242

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                      +D        ++   A  +LS  +  ++ +     K+  LS+ +
Sbjct: 243 MDGAHSENKLFVDKVSGDLSALDYGEASVRLSNYMAALQATQASYVKINDLSLFD 297


>gi|293395590|ref|ZP_06639873.1| flagellar hook-associated protein 3 [Serratia odorifera DSM 4582]
 gi|291421909|gb|EFE95155.1| flagellar hook-associated protein 3 [Serratia odorifera DSM 4582]
          Length = 321

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 119/350 (34%), Gaps = 38/350 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++      +     +K  +++ +G+            +  +   Q +    + 
Sbjct: 3   MSTSMMYQQNMSGLTDNQSLWMKSAQQLSSGKKVLTPSDDPLAASQAIMVSQAQAENGQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +   + +S  +  LS++   ++DM   +V   +G   +N     A  L+   +  +
Sbjct: 63  ALARTFARQSVSMEETVLSNVTSGIKDMKALIVNAGDGTLSDNDRASLATQLQGMKDQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN TD  G+Y+F+G  + + P                Q       +   + +  +   
Sbjct: 123 SQANSTDGNGRYMFAGFKNDQPPF-------------VQQADGSIRYQGGSTPIEQKVDA 169

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
             +M      D I       + +     + S    +           ID +       ++
Sbjct: 170 NRTMTVGHTGDAI---FMTLTSNPKPEPDGSAPVANVFDS-------IDTALEALKTPLQ 219

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                        + + T    +V   K    +    + ++  RA LG ++    +    
Sbjct: 220 ------------GADDATREKVSVALDKANRGLDNSYNNVLSVRAELG-TQLQEMDTLDS 266

Query: 305 LQNKNNIIDT-YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +    ++ +   +S  + V+   A +        ++ SY   + +Q +S+
Sbjct: 267 IGKDRDMTNQAQLSALVDVDMVEAISSYFMQQAALQASYKTFSDMQGMSL 316


>gi|11136620|gb|AAG31287.1|AF317649_2 flagellar hook-associated protein 3 [Rhodobacter sphaeroides]
          Length = 409

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 79/300 (26%), Gaps = 27/300 (9%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM 130
            +  R       L +        V     +     D       +  LR +          
Sbjct: 123 ALANRKDAMGQGLFAGYAAGPAFVKEGDTVRFAGNDGQPVAQLSETLRVA---------T 173

Query: 131 TDEGQYLFSGINSSEKP-------------LNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
           +  G  +F  + +   P             L+      S  + + D          + + 
Sbjct: 174 SLGGAEVFMAVPTEAGPRSVFELADDLVATLSVPLAHSSPQRTAEDTARLSLAAPPAPAT 233

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237
           +           + ++   +        +        +   + +    +     I VS  
Sbjct: 234 VRFTLTGPGG--SVEIEQRLPGSALAAINAASPQTGVTATEEPDGTLVLGAVGRITVSDM 291

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
                 RD++       +     +                   +S + EQRA  G    +
Sbjct: 292 SRSDDPRDVLATFTSADDKGGWIMPARFDAASLTDAFDA---AVSHMAEQRARAGALAAS 348

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++ +   ++ +   I T I     ++   A  +L  L+   E +     K+   S+ +YL
Sbjct: 349 VDTQADAIRTRQTRIATAIGGLEDLDVAEAVTRLQQLLLTQEAAQQTYVKIANRSLFDYL 408


>gi|330875991|gb|EGH10140.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967098|gb|EGH67358.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 530

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  +E  N   +    + +K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFYESTNTNYQRTYSNVLKTSEEVSSGIKLNTASDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   +  S+  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ASNIGTINTNIVNSETALTSIVDTMQAAREVVVSAGNGAYTDSDRLAKAAELKQYQSQIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+F+G  SS  P
Sbjct: 123 GLMNSQDANGQYIFAGSKSSAPP 145


>gi|167626162|ref|YP_001676456.1| flagellar hook-associated protein 3 [Shewanella halifaxensis
           HAW-EB4]
 gi|167356184|gb|ABZ78797.1| flagellar hook-associated protein 3 [Shewanella halifaxensis
           HAW-EB4]
          Length = 305

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 80/239 (33%), Gaps = 12/239 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S  +++       +    D  KL+E M TG S             ++  E++     + 
Sbjct: 3   VSMLNLYSNNLQSLQNSTFDIAKLNEMMSTGSSILRPSDDPIGAVKVIGNERDMAATNQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +   ++   S S+ ++SSM ++   M    V    G          A  + +  E+F 
Sbjct: 63  IKNTESLSTSFSRSETYMSSMVELQGRMREITVSANNGSLSPEDRAAYAAEMNELLEAFA 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL-----NGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
              N  D  G YLFSG  +   P+       Y  +     +        ++  NS +   
Sbjct: 123 DTLNAKDESGNYLFSGNKTDTPPIGKDADGNYVYQGDTNTREVQTSGSSWMTANSTAADF 182

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
                 + +   Q  DFI  LED           +S A       +    + +   ++ 
Sbjct: 183 IFSNGSTDI-LNQTKDFIAALEDPTLAPGDPV--FSQA---ATDMQTSLDDTLTSISSA 235


>gi|227328345|ref|ZP_03832369.1| flagellar hook-associated protein FlgL [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 317

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 116/349 (33%), Gaps = 39/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++             K  E++ +G+             S +   Q ++  ++ 
Sbjct: 3   LSTSMMYQQNMQGIINGQATWQKTGEQLSSGKRVVNPSDDPIAAASAIMLGQAQSENSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +   + +S  ++ LS     +   +  ++       D+++  + A  LR      +
Sbjct: 63  TLARTFAKQSMSLEESILSKSTNTISSALTEVIKGGGVLNDDDRKSVAAA-LRGMKAELL 121

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G Y+FSG  + + P              F +   G   +     ++ +   
Sbjct: 122 NMANSTDGNGNYIFSGYETDKVP--------------FVEGAAGIEYKGGYQAISQRVDA 167

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
              M    +      + +  + D     + S  SD          E +D++       + 
Sbjct: 168 ARDMTVSHVGS---TVFNGVTGDAKKEPDGSIQSD--------LFETLDIAIKALETPL- 215

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                        + + T        +     +    + I   RA LGI    I+     
Sbjct: 216 -----------DGANDTTKANVAAALETANRGLNNSFNNISAVRAELGIQLNEIDNLDAV 264

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++++    T +S+    + + A +      + ++ SY     +Q +S+
Sbjct: 265 GKDRDVANKTALSQLQDTDWYEAISSYIMQQSSLQASYTAFQNMQGMSL 313


>gi|291558292|emb|CBL35409.1| Flagellin and related hook-associated proteins [Eubacterium siraeum
           V10Sc8a]
          Length = 331

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/351 (10%), Positives = 102/351 (29%), Gaps = 25/351 (7%)

Query: 8   TSSIFERMNILTKELNKDSVKLHE-EMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           T S+  R  +       +     E ++ + +  +   +        L   +  ++  + L
Sbjct: 4   TQSMTNRRYMSQLNAALERKNASERKINSKKRYNRASEDPISAAKALRTRKAISNTNDYL 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            +     +  + + + L ++  I+ +++  +     G   +    I A  +    +  V 
Sbjct: 64  ANLETAEQIYNGADSVLMNVNDILDNIIEKVTYAANGTQHDEDEEILAQTVETFADEIVR 123

Query: 127 FANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS 186
             N     + +F G+N+       +  ++   KK+           +            +
Sbjct: 124 LFNTDIAERRIFGGVNNDT---TVFKIENVGGKKTITYNGVDINSIDDPDKFPYSESSFT 180

Query: 187 SMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI 246
            +    + D      D  S        ++ A       +I      D   + N       
Sbjct: 181 DIGTGMVIDPATGRVDPQSALP---VTFNGA-------KITGCGKDDEGDSKN------- 223

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
               +I     +         +     +  ++   + +    A +G  ++ I      L 
Sbjct: 224 ----IIQITLDAAQAVREGDKIKAMDYIDKLRAAQTSVSVAHADIGNKQEYIEYNTNRLT 279

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           N    +    +   G +         TL     +S  + + +  +SI  ++
Sbjct: 280 NNMETLLEQQNNLEGTDMGAETTNWKTLEAIYNVSLQLASSVIPMSIFQFI 330


>gi|327398476|ref|YP_004339345.1| flagellin domain-containing protein [Hippea maritima DSM 10411]
 gi|327181105|gb|AEA33286.1| flagellin domain protein [Hippea maritima DSM 10411]
          Length = 900

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 3/129 (2%)

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
            ++     +N+ +    +        + K    +V     L            N   ++D
Sbjct: 61  QYVTNINSANAYLDAEDTALSNADDLLHKAGTLLVDGANSLNNDLASRTAIAENLDSIKD 120

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
                +  AN   +G+YLFSG  +  KP+     + +    + D  ++       ++   
Sbjct: 121 EL---IDSANTIFQGKYLFSGTKTDTKPIQTIQNEATTINITKDTTIKDIKIAADENFSD 177

Query: 180 GQHLEVSSM 188
              L+  + 
Sbjct: 178 INQLDSGNY 186


>gi|56460245|ref|YP_155526.1| flagellin [Idiomarina loihiensis L2TR]
 gi|56179255|gb|AAV81977.1| Flagellin [Idiomarina loihiensis L2TR]
          Length = 404

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 110/361 (30%), Gaps = 52/361 (14%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
             + +L   ++     +   ++  +   L   ++ L+S+   +Q      V    G  D 
Sbjct: 45  GNSQVLALNEKIGQNEQFERNSVTLENNLRREESVLNSITDAIQKARTLAVQAGNGSYDQ 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPL------NGYFTKDSLAKK 160
                 A  LRD   S     N  D  G+Y+F+G  +  KP+        Y       ++
Sbjct: 105 TNRKAIAAELRDIESSIFDLTNAQDESGEYIFAGYQNRTKPMEFDDATQSYQYVGDQGQR 164

Query: 161 SFDQMLQGFLEENSKSL-------------LAGQHLEVSSMNAQQMTDFIKQLEDKFS-- 205
           +       +L  N                 L G +  +  +        I   E + +  
Sbjct: 165 TIQLSPTLYLPANDPGNKAFSNVSKRVDFELTGGNDYIEKVEVTDRNTLIADTEARIAAG 224

Query: 206 DDEYWANNWSNAS--------DHNIKYRIKDTEGI------------------DVSANVN 239
           D   +  N++           +  +   I D +                      S ++ 
Sbjct: 225 DPTNFTVNFTGPDTYEIDDGVNPVVAGTITDGKVEYNGMSLELDKDNMPAAGDSFSYSIG 284

Query: 240 MRGIRDIMFVAVIGTEFLSKNL--TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
               R+++       + L ++   + G         L      +  + + +A +G +  N
Sbjct: 285 EPVSRNLLTQLGDLADVLEESGPESKGFHESEIAFALDDFNTVIGDLTDTQASVG-ARLN 343

Query: 298 INEERVFLQNKNNIIDTYI-SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
           + +          I++    S    V+   A   L         +  + T++ +LS+ +Y
Sbjct: 344 VMDNAKLSNADIEIVNKKARSDISDVDYSEAMTDLVKNETIYSAAQQVFTRISRLSLFDY 403

Query: 357 L 357
           +
Sbjct: 404 I 404


>gi|217972605|ref|YP_002357356.1| flagellar hook-associated protein FlgL [Shewanella baltica OS223]
 gi|217497740|gb|ACK45933.1| flagellar hook-associated protein 3 [Shewanella baltica OS223]
          Length = 403

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 77/186 (41%), Gaps = 1/186 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S++ +F +      +    + K+ +++ +G+  +           I    Q+   + + 
Sbjct: 3   LSSAQLFNQSITSVLQKQTATSKILDQLSSGKKVNTAGDDPVASQGIDNLNQKNALVDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +    T RL+ +++ L S + +   +   ++  + G     +  + A  ++ S E  +
Sbjct: 63  MKNIDYATNRLAVTESKLGSAEDLTGSIREQVMRAINGTLSGTERQMIADEMKGSMEELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  G Y+FSG ++ ++P     +       S D  ++  L +   ++      +
Sbjct: 123 SIANSKDESGNYMFSGFSTDKEPFAFDNSTPPKIVYSGDSGVRNSLVQTGVAMGTNIPGD 182

Query: 185 VSSMNA 190
            + M A
Sbjct: 183 SAFMKA 188


>gi|315125991|ref|YP_004067994.1| lateral flagellar hook-associated protein, LfgL [Pseudoalteromonas
           sp. SM9913]
 gi|315014505|gb|ADT67843.1| lateral flagellar hook-associated protein, LfgL [Pseudoalteromonas
           sp. SM9913]
          Length = 298

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 54/164 (32%), Gaps = 2/164 (1%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
               I+    E   + +   +   V   L   +  L+ +   +  +   +    +G    
Sbjct: 45  GTVMIMNLGSEIKSLEQYKTNMDAVNFSLGQQEVQLTGIVNQIYSLQSLITTAADGSMGE 104

Query: 108 NKFPINAGMLRDSYESFVTFAN-MTDEGQYLFSGINSSEKPLN-GYFTKDSLAKKSFDQM 165
            +       +  ++ + V   N    +GQY FSG  + EKP           A     + 
Sbjct: 105 AEIKALGQEMSVAFPAIVDLLNATDSDGQYYFSGSKTDEKPFQIDATGNYVYAGDDIVRE 164

Query: 166 LQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY 209
           +    + + K+ + G  L+  +     M D++  + +  +    
Sbjct: 165 VAVSDDSSVKNNIVGNDLDPGAGFLNAMQDYLVDVNNPPAGGVG 208


>gi|327441343|dbj|BAK17708.1| flagellin [Solibacillus silvestris StLB046]
          Length = 295

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 48/161 (29%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ S +   M            KL E++ +G+  +            + +  + + I + 
Sbjct: 3   ITQSMLSSNMLRNLNTSYGKMSKLQEQINSGKIINRPSDDPVVAVKGMGYRVDLDKIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     + +S   L  +   +Q +   +         +         +    +   
Sbjct: 63  QRNMNTAHNWIDSSDEALDQVGNALQRVQELVTQAANDSNTSEDRQKIQVEIEQIQQQMR 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQML 166
             AN      Y+FSG N+S        +         ++ +
Sbjct: 123 DLANTKVGENYIFSGTNTSSPLYPDSTSNIMSNGTGLNKAV 163



 Score = 36.6 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 35/74 (47%)

Query: 284 IIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYM 343
           ++EQRA++G  +         L      I   +SK+   +   A  +++T  +  + S  
Sbjct: 221 VLEQRAIIGARQNRAELMGNRLSISEVNITKQLSKNEDTDYAKAITEMTTAESIHQASLS 280

Query: 344 ITTKLQKLSILNYL 357
           +  K+ + ++++++
Sbjct: 281 VGAKIIQQTLVDFI 294


>gi|329928724|ref|ZP_08282573.1| flagellar hook-associated protein 3 [Paenibacillus sp. HGF5]
 gi|328937505|gb|EGG33923.1| flagellar hook-associated protein 3 [Paenibacillus sp. HGF5]
          Length = 297

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 103/333 (30%), Gaps = 60/333 (18%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             K  E+M+T +  +        V S L++  +     +   +       L      ++ 
Sbjct: 23  LDKYQEQMMTQRRINRPSDDPVGVASALQYRGQITATTQFEQNAEDADSWLKYGDTVMTE 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           + +I+Q +    V         +     A  +   ++  V+  N   +G+Y+F+G  + E
Sbjct: 83  VTQIIQKLSELAVQGGTDTVPADARENIAAEVDQLFQQLVSLGNSQFKGKYIFNGERTDE 142

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFS 205
           +P                     F ++ +++  A  + EV       +T  +  L +K  
Sbjct: 143 RP---------------------FPDDPTQTAYALDNGEVRYQVGAGITVSVNTLGEKVF 181

Query: 206 DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGA 265
                                                  D   +  +   F    L D  
Sbjct: 182 G-----------------------------------AYGDASGIFAVVDNFKKALLADDT 206

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL-QNKNNIIDTYISKSIGVEQ 324
                +  + ++Q+ L   I  +A +G  +  +      L     N +D   SK    + 
Sbjct: 207 --AGIQSAIPSLQKNLETTITSQAEMGGKQNRLEFTLNRLGDLNINYMDLQ-SKVEDADI 263

Query: 325 HTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 L T  +  + S     ++ + S+L++L
Sbjct: 264 SKVIIDLKTSESVYQASLDTMARIIRPSLLDFL 296


>gi|195953200|ref|YP_002121490.1| hypothetical protein HY04AAS1_0825 [Hydrogenobaculum sp. Y04AAS1]
 gi|195932812|gb|ACG57512.1| hypothetical protein HY04AAS1_0825 [Hydrogenobaculum sp. Y04AAS1]
          Length = 597

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 3/166 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG-QSSDYGLQLGARVTSILEWEQEKNHIAE 64
           IS  S++         +  +     EE  TG +  + G   G     ++  ++E   ++ 
Sbjct: 5   ISDLSLYNFYKSQDSVVLNNLQDTIEEASTGYKLLNIGQNPG-DTQQVINLKKEIVLLST 63

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT-DNNKFPINAGMLRDSYES 123
              +    +  L+T+ + L ++   +Q +   +V      T ++ +       +      
Sbjct: 64  YSQNAFSASNVLTTTTSVLGNLYDYLQTVNTDVVAAANEATYNSTQLINMGQSIYSILNL 123

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF 169
            ++ AN      YLF G + S +P    F+  +     + Q+   +
Sbjct: 124 TLSKANEKFGDNYLFGGSSLSIQPFTADFSYQASTTDFYTQISNSY 169


>gi|49205099|dbj|BAC75963.2| putative flagellar hook-associated protein FlgL [Pseudomonas
           syringae pv. tabaci]
          Length = 530

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  +E  N   +    + +K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFYESTNTNYQRTYSNVLKTSEEVSSGIKLNTASDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   +  S+  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ASNIGTINTNIVNSETALTSIVDTMQTAREVIVSAGNGAYTDSDRLAKAAELKQYQSQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+F+G  SS  P
Sbjct: 123 GLMNSQDSNGQYIFAGSMSSAPP 145


>gi|283833623|ref|ZP_06353364.1| flagellar hook-associated protein 3 [Citrobacter youngae ATCC
           29220]
 gi|291071306|gb|EFE09415.1| flagellar hook-associated protein 3 [Citrobacter youngae ATCC
           29220]
          Length = 317

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 116/351 (33%), Gaps = 44/351 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++++          + +K  E+M TG+            +  +   Q +   ++ 
Sbjct: 3   ISTQMMYQQNMRGITNSQAEWMKFGEQMSTGKRVINPSDDPIAASQAVVLSQAQAQNSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +  T+++S  +  L+ +   +Q     +V    G   ++     A  L+   +  +
Sbjct: 63  TLARTFATQKVSLEENVLNQVTTAIQAAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F G  +   P                               A     
Sbjct: 123 NLANSTDGNGRYIFGGYKTESAPFA----------------------------QADGSYN 154

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDT--EGIDVSANVNMRG 242
             + N  Q  D  + +    + D+ +A+  SNA         +    + +D +       
Sbjct: 155 GGTTNVTQQVDASRTMVIGHTGDKIFASLTSNAVPEPPGSTQEKNLFKMLDSAI------ 208

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
                  A + T     ++          K    ++  L+ ++  RA LG     ++   
Sbjct: 209 -------AELNTPIAGDDVAKDKAAAAIDKTSRGLKNSLNNVLSVRAELGTQLSELSSLD 261

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
               ++       +S  + V+ + A +        ++ SY   T +Q +S+
Sbjct: 262 SLGADRALGQTQQMSNLVDVDWNAAISSYVMQQAALQASYKTFTDMQGMSL 312


>gi|308071105|ref|YP_003872710.1| flagellin [Paenibacillus polymyxa E681]
 gi|305860384|gb|ADM72172.1| Flagellin [Paenibacillus polymyxa E681]
          Length = 302

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/351 (11%), Positives = 104/351 (29%), Gaps = 56/351 (15%)

Query: 8   TSSIFERMNILTKELNKD-SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           TS +     +     N +   K+  ++ TG+  +        VT  L +  E     +  
Sbjct: 6   TSGMTNMQLLSNLNRNNNNMGKMENQISTGRKLNKPSDDPVGVTYALRYRAELASNEQYK 65

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            ++      L  +   +     +++ +    V         +        +       + 
Sbjct: 66  TNSDAAVSWLDFTDTTMQQAGDVMKRLKELTVQASSETLPQSGLDSIKLEVDQLKGQMMN 125

Query: 127 FANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS 186
             N    G+Y+F+G N  + P     T  S  + + DQ    +   +  +          
Sbjct: 126 IGNSQLRGKYVFNGQNYDQAPYQLSATVTSYDQINPDQGAVSYAVGDQDAFRV------- 178

Query: 187 SMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI 246
           + +           ++ F   +  ++  SN +   I  ++   E                
Sbjct: 179 NTSGSDFFGKSTDPDNVFKVIDALSSALSNGNSTVISSQLSSIE---------------- 222

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
                                    KM +++           + +G     +   +  L+
Sbjct: 223 ---------------------SRFTKMQTSL-----------SEVGARTNRVELIQSRLE 250

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +N  + T  +K+   +  +   Q ++     E +   + K+ + S+++++
Sbjct: 251 ERNLNLTTLQAKTEDADVASLMIQATSAQTIYEAALKSSAKIMQPSLMDFM 301


>gi|332558501|ref|ZP_08412823.1| flagellar hook-associated protein 3 [Rhodobacter sphaeroides WS8N]
 gi|332276213|gb|EGJ21528.1| flagellar hook-associated protein 3 [Rhodobacter sphaeroides WS8N]
          Length = 409

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 79/300 (26%), Gaps = 27/300 (9%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM 130
            +  R       L +        V     +     D       +  LR +          
Sbjct: 123 ALANRKDAMGQGLFAGYAAGPAFVKEGDTVRFAGNDGQPVAQLSETLRVA---------T 173

Query: 131 TDEGQYLFSGINSSEKP-------------LNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
           +  G  +F  + +   P             L+      S  + + D          + + 
Sbjct: 174 SLGGAEVFMAVPTEAGPRSVFELADDLVATLSVPLAHSSPQRSAEDTARLSLAAPPAPAT 233

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237
           +           + ++   +        +        +   + +    +     I VS  
Sbjct: 234 VRFTLTGPGG--SVEIEQRLPGSALAAINAASPQTGVTATEEPDGTLVLGAVGRITVSDM 291

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
                 RD++       +     +                   +S + EQRA  G    +
Sbjct: 292 SRSDDPRDVLATFTSADDKGGWIMPARFDAASLTDAFDA---AVSHMAEQRARAGALAAS 348

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++ +   ++ +   I T I     ++   A  +L  L+   E +     K+   S+ +YL
Sbjct: 349 VDTQADAIRTRQTRIATAIGGLEDLDVAEAVTRLQQLLLTQEAAQQTYVKIANRSLFDYL 408


>gi|302185575|ref|ZP_07262248.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           syringae 642]
          Length = 530

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  +E  N   +    +  K  EE+ +G   +         + +L+  Q+ + + + 
Sbjct: 3   ISTTQFYEATNANYQRNYSNLNKTSEEVSSGIKLNTASDDPVGASRVLQLTQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   +  ++  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  EANIGTINTNVVNTETALTSIVDTMQAAREEIVSASNGALTDSDRLAKAAALKQYQSQIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+F+G  +S  P
Sbjct: 123 GLMNSQDPNGQYIFAGSKASTPP 145


>gi|295401180|ref|ZP_06811153.1| flagellar hook-associated protein 3 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976773|gb|EFG52378.1| flagellar hook-associated protein 3 [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 304

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/358 (11%), Positives = 102/358 (28%), Gaps = 63/358 (17%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEWEQEKN 60
           ++   +   M        +   K  E++VTG+       D  + +       + + ++  
Sbjct: 3   VTQFMLANNMLRNLSNSYERLGKYQEQLVTGKKISRPSDDPVVAM-----KGIAYREDLA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + +   +   V   + ++   L  +   +Q +   +V               A  +   
Sbjct: 58  RVKQYQRNIGEVHNWIDSADDALDKVGLALQRVQELVVQASTDTATPEDRKKIADEIEQI 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +  V  AN    G+Y+F+G ++      GY         + +        E    +   
Sbjct: 118 QKHIVDVANTKVGGKYIFNGADTKNPLFIGYPDGMGGLGLNPNANTSDVEIEVFDGIKLD 177

Query: 181 QHLEVSSMNAQQM-TDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
            ++    + A  +  D I +L +K  +D                                
Sbjct: 178 VNINGKELFAGTIGQDGIVRLLEKIKND-------------------------------- 205

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
              +RD       G +         A+        S +                 +  + 
Sbjct: 206 ---LRD---GTKTGDDIDGYLGKIEAQQDALLAARSELGA--------------KQNRVE 245

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                L  +  I    +S +  +E       L T  +   ++  +  ++ + +++++L
Sbjct: 246 MMENRLSTQEVIATKLMSNNEDIEYEKTITDLITQESVHRVALSVGARIIQPTLVDFL 303


>gi|119952980|ref|YP_945189.1| flagellar hook-associated protein FlgL [Borrelia turicatae 91E135]
 gi|119861751|gb|AAX17519.1| flagellar hook-associated protein 3 [Borrelia turicatae 91E135]
          Length = 424

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/379 (12%), Positives = 117/379 (30%), Gaps = 70/379 (18%)

Query: 47  ARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTD 106
             VT  +  + +   +   + + +    +L   + +L S+  I+       V    G   
Sbjct: 47  TGVTHAIRLDSDIFKLNTYVKNINSAKGKLRYMEGYLQSLANILTRAKEITVQGASGTYK 106

Query: 107 NNKFPINAGMLRDSYESFVTFANM-TDEGQYLFSGINSSEKPLN-------GYFTKDSLA 158
            +   I A  +    E  +  AN+   +G  +F+G     +             T+D   
Sbjct: 107 TDDKKIIAKEINAILEDVLAIANVKGADGYSIFAGTKIDNEAFKVIRENRINKLTQDKAE 166

Query: 159 KKSFDQMLQGFLEENSKSLLAGQHLEVS----------------------SMNAQQMTDF 196
            +       G   E +  +  G ++  +                       +  +    +
Sbjct: 167 TQIVRIDYNGNQAEQTTEIYNGIYIPTNYPGSEIFFSHNHYITSSKNVNGFIVKENTKIY 226

Query: 197 IKQLEDKFSDDEYWAN-----NWSNASDHNIKYRIKDTEGIDVSAN-------------- 237
           I  +E   +  +  A+     N S+A       RI ++  I  +                
Sbjct: 227 IDNIEIALTAGDTAADIIAKINESSAPVEATLDRILNSMVIQTTIPHQIWITEEEGSTVL 286

Query: 238 -------------------VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQ 278
                               N   +R+      +    L  NL +    ++  + L+ + 
Sbjct: 287 KELGILTQNNETKEPPYNIANNTEVRNRTIFDSLIE--LRDNLEENREEIIGSRGLAEID 344

Query: 279 QGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI 338
             L+ I    A LG  E  ++     +  +   +   + K   ++   A  +L+      
Sbjct: 345 ASLNKIFATLADLGTKENRLDRSYERISKEIMDMKDDMVKYTDLDVTKAITELNMTSLAY 404

Query: 339 EMSYMITTKLQKLSILNYL 357
           ++S  ++ ++ + ++L++L
Sbjct: 405 QVSLGVSARIMQTTLLDFL 423


>gi|262173361|ref|ZP_06041038.1| flagellar hook-associated protein FlgL [Vibrio mimicus MB-451]
 gi|261890719|gb|EEY36706.1| flagellar hook-associated protein FlgL [Vibrio mimicus MB-451]
          Length = 299

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 117/355 (32%), Gaps = 65/355 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNH 61
           IS +   + M    +  N     + ++M TG    + SD  +        +L+ ++E + 
Sbjct: 3   ISDTQFSQMMLQSLQTNNAGLGNVMQQMSTGERLTKLSDDPMA----SVKLLKLDREGSA 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I +   + ++V   LS  + HL S+ + ++ M   ++    G   +         L+   
Sbjct: 59  IKQYQDNINMVKTTLSNQEVHLDSVSESLKSMRELVLWGANGTLTDEDRDGMISKLKSLR 118

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            S V+  N  D +G YLFSG  +    LN         K     +  G  ++   ++  G
Sbjct: 119 GSIVSSFNARDEDGHYLFSGTKTDTAALN---------KTDAGYVFNGNNDKRVVTVAKG 169

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
             +E S+M A+ + D                        +N+  +I              
Sbjct: 170 VTVE-SNMTAKDILDLGGG--------------------NNVLNQID------------- 195

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                     V+  EF                 L  +   L+ ++     +G    N++ 
Sbjct: 196 ----------VLIKEFEKPGKN---FKAKVDSSLKAIDDSLANVLGALTEIGGRYNNLDL 242

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                      +D        ++   A  +LS  +  ++ +     K+  L++ +
Sbjct: 243 MESAHSENKLFVDKVTGDLSKLDYGEASVRLSNFMAALQATQASYVKINDLNLFD 297


>gi|302037636|ref|YP_003797958.1| putative second flagellar hook-filament junction protein FlgL
           [Candidatus Nitrospira defluvii]
 gi|300605700|emb|CBK42033.1| putative Second flagellar hook-filament junction protein FlgL
           [Candidatus Nitrospira defluvii]
          Length = 296

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 79/285 (27%), Gaps = 59/285 (20%)

Query: 73  TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
           T R++ +   L  +Q ++  +    +      T        A  +R      V   N   
Sbjct: 70  TARVNAADQALGQVQNLITRVRELTIQASSDTTSAEGRQSIAKEVRQLQRQLVQLGNTEV 129

Query: 133 EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQ 192
            GQ +F G  +  +P                     F   +  ++    + E  S+   +
Sbjct: 130 AGQAIFGGTKTDVQP---------------------FTITSGDTVAYQGNSETQSIAVGE 168

Query: 193 MTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI 252
                                     +  ++  +  +     S       +RD++     
Sbjct: 169 --------------------------NQTVQILVPGSSIFTGSTTNMFDSLRDLLTAL-- 200

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
                     +       +  L  +    + I + +  +G     +      L      I
Sbjct: 201 ----------ESNNRSGIQAGLGNLDLATAQISDVQGTVGALANRLQVTHDALDTATLTI 250

Query: 313 DTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              IS +   +  TA  QL      ++ +    TK+   S++NYL
Sbjct: 251 TKSISDNQDADLATAITQLRLQEVAVQAASETFTKIFDSSLINYL 295


>gi|157373200|ref|YP_001471800.1| flagellar hook-associated protein 3 [Shewanella sediminis HAW-EB3]
 gi|157315574|gb|ABV34672.1| flagellar hook-associated protein 3 [Shewanella sediminis HAW-EB3]
          Length = 305

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 115/354 (32%), Gaps = 61/354 (17%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST +++       +    D  +L+E M TG+S             ++  E++     + 
Sbjct: 3   VSTQNMYSSNLYNLQNTTSDLARLNEMMSTGKSLLRPSDDPIGSVKVIGSERDMAATNQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           L +   ++     ++++LSSM ++   M    V    G          A  + +  ++  
Sbjct: 63  LKNIESLSTSFGRAESNLSSMTELQSRMREITVAANNGSLSAEDRAAYAAEMNELLDALT 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN-----GYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
              N  D  G YLFSG  +   P++      Y  +   +++        ++  N  +   
Sbjct: 123 DTINAKDEGGNYLFSGNLTDTPPISIDASGNYIYQGDASQREVQVSSSSWMPANVTAQEF 182

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                 + +   Q  +FI  LED                                + +  
Sbjct: 183 IFSNGSTDI-LNQTKEFIAMLEDP-------------------------------TLSPG 210

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
                ++                          ML+T+   L+ I      +G  + ++ 
Sbjct: 211 DPAFDNVAES-----------------------MLTTLDDTLTSISSAMTDIGGKQNSLT 247

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             +   +         I ++ G++   A A+ +  +  ++++     ++ +LS+
Sbjct: 248 LIQGSHEEMVLFNKEVIGETEGLDYAQATAEFNVKLTTLKVTQQTFVQVSQLSL 301


>gi|283957136|ref|ZP_06374600.1| flagellin family protein [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791312|gb|EFC30117.1| flagellin family protein [Campylobacter jejuni subsp. jejuni 1336]
          Length = 749

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 5/143 (3%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T+S+   M            ++ +++ +G       +  +        E E   + +   
Sbjct: 10  TNSVNNSM-----GGQSALYQISQQLASGLKIQNSYEDASIYIDNTRLEYEIKTLEQVKQ 64

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           + +   +    S   L  M K+++D    +                A  L    ES V  
Sbjct: 65  ATNSAKEMTQNSMKALQDMVKLLEDFKVKVTQAASDGNSQTSREAIAKELERIKESIVQL 124

Query: 128 ANMTDEGQYLFSGINSSEKPLNG 150
           AN +  GQYLF+G   + KP + 
Sbjct: 125 ANTSVNGQYLFAGSQVANKPFDS 147



 Score = 40.8 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 42/113 (37%)

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D M  AV+     +   +   RN   +  L  +      I +    +G     I+     
Sbjct: 637 DTMIDAVLSGNMRADGNSADPRNTGMQGALERLDHLADHISKLNTTMGAYHNTIDGVNTR 696

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   +  + +  S  I V+   A   L  +    + S   +T + +LS+LNY+
Sbjct: 697 VNFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTISQLSLLNYM 749


>gi|238762353|ref|ZP_04623324.1| hypothetical protein ykris0001_25950 [Yersinia kristensenii ATCC
           33638]
 gi|238699338|gb|EEP92084.1| hypothetical protein ykris0001_25950 [Yersinia kristensenii ATCC
           33638]
          Length = 294

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 111/341 (32%), Gaps = 65/341 (19%)

Query: 25  DSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQ 80
           +  KL E++ +G    + SD  +        +++ E  K+ +++   +   ++   S  +
Sbjct: 11  EYSKLDEQLTSGKRVNRISDDPVA----SMQLVQLENSKSDVSQYKINVVRLSGNYSVQE 66

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQYLFS 139
           A L+S+ K +  +   ++          +       +    +  ++  N    EG YLFS
Sbjct: 67  ASLNSLDKQLLVVRDKMLAAKNSNHSATESATFGREINLLLDGMMSDLNTKNSEGNYLFS 126

Query: 140 GINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQ 199
           G  S+ KP+  Y +       + +   +  +  N  +L     L  S   +    + +  
Sbjct: 127 GTKSNIKPV-EYDSTTQKYTFNGNSERRDAVVGNGITLQENTDLSSSLSTSANDLEILTN 185

Query: 200 LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSK 259
           L+                            + ID S                        
Sbjct: 186 LKKL------------------------ANKMIDSSIT---------------------- 199

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS-K 318
                  N      L+ ++     I      LG  +  +      L +   I++  +   
Sbjct: 200 ---PATYNQEISTNLTAIETAAKKIGGMLTELGAKQNRLEH-LSNLHDDVEIVNGNLEKD 255

Query: 319 SIGVEQHT--AHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             G++     A  Q + L  KI  ++ +  K+ +LS+ NY+
Sbjct: 256 LAGIDIFQVNAAMQSNFLSTKI--AHSMQAKISQLSLFNYI 294


>gi|224825171|ref|ZP_03698277.1| flagellar hook-associated protein 3 [Lutiella nitroferrum 2002]
 gi|224602842|gb|EEG09019.1| flagellar hook-associated protein 3 [Lutiella nitroferrum 2002]
          Length = 304

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 113/353 (32%), Gaps = 53/353 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS +F +     +       KL E++ T +              +LE  Q +    + 
Sbjct: 3   ISTSMVFTQGYTGIQGNQYTLNKLQEQLSTQKRVVVPSDDPVASAQMLEVSQSEGRNLQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +   V   L+ S+  L+S   ++  +    +    G     +  +    +++ +   V
Sbjct: 63  VKNGDAVESSLAISETSLNSANGLLASLKELAIQAGNGGLATTQLKMIQTDVKERFNQLV 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           ++AN +D  G YL+ G      P         +A  S +    G        + A + + 
Sbjct: 123 SYANTSDSRGNYLYGGNAIDSPPF--------VADSSLNVTYTGDTGRRDVQISAERQVP 174

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           ++ + +                       + NAS                S       +R
Sbjct: 175 ITEVGSA---------------------VYGNAS----------------SDTAVFDTVR 197

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D           L ++      +     +LS +      +   +A +G         +  
Sbjct: 198 DFY-------NLLGQDPKPANFSTQLSSILSGLDAAQVNLSTVQASIGSRRSENETLQSV 250

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            Q+ +    T +S    ++     +  +   + ++ S +   K+  LS+ NYL
Sbjct: 251 GQDLDVQYKTRLSNLDDLDLPKTISDFTLAQSALQYSQLTFQKVSGLSLFNYL 303


>gi|57167903|ref|ZP_00367043.1| probable flagellin Cj0887c [Campylobacter coli RM2228]
 gi|57021025|gb|EAL57689.1| probable flagellin Cj0887c [Campylobacter coli RM2228]
          Length = 734

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 35/96 (36%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
            E E   + +   + +   +    S   L  M K+++D    +                A
Sbjct: 36  LEYELKTLEQVKQATNSAKEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSREAIA 95

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNG 150
             L    ES V  AN +  GQYLF+G   + KP + 
Sbjct: 96  KELERIKESIVQLANTSVNGQYLFAGSQVANKPFDS 131



 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        +    +  +  N  +   ++  ID     N+  I+D+  
Sbjct: 567 SGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTID---EPNVDIIKDLDS 623

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      + +    +G     I        
Sbjct: 624 MIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTS 683

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  + +  S  I V+   A   L       + S   +T + +LS+LNY+
Sbjct: 684 FLSVNVQSIKSNVIDVDYGEAMMNLMQTQLAYQASLKASTTISQLSLLNYM 734


>gi|312882652|ref|ZP_07742389.1| flagellar hook-associated protein FlgL [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369613|gb|EFP97128.1| flagellar hook-associated protein FlgL [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 397

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/408 (12%), Positives = 120/408 (29%), Gaps = 69/408 (16%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQE 58
            +  +  S+   +     +++ +      ++ +G+     SD  L        I    Q+
Sbjct: 6   ASFHNYQSVQNDLRRTESKVHHN----QAQLASGKKLLKASDEPLA----THYIQNIGQQ 57

Query: 59  KNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLR 118
           K  + +   +  L   RL   +  +S+ +  V D    ++ ++ G             ++
Sbjct: 58  KEQLRQYTDAIGLTRNRLEHEEVVISNAESYVDDAKRTVMEMINGALSPEDRLAKQREIK 117

Query: 119 DSYESFVTFANMTDE-GQYLFSGINSSEKPL------------NGYF------------- 152
           +   +F+   N+ DE G Y+F+G     +P             + Y              
Sbjct: 118 EIANNFLNLVNIQDETGNYIFAGTKPKNQPFFRNKDNDVSYAGDDYQRKMRISSSLVVPM 177

Query: 153 -TKDSLAKKSFDQMLQGFLE-----------ENSKSLLAGQHLEVSSMNAQQMTDFI--- 197
               SL     D     +                 +        + ++   +M       
Sbjct: 178 NDPGSLLFMEIDNPFGDYKPLYNLQIESELLLEKATNSNPNDQSIYNVTFVEMPSGKFGY 237

Query: 198 -----KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI 252
                  +    + D      + + S   +K +I   + I +                  
Sbjct: 238 QLEKDGAVVQADTFDPSIGIQFGDVSIQ-VKGQITKGDQITLEPRKTYSIFESFRESMEY 296

Query: 253 GTEFLSKNLTDGARNVLTKK---MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
               +S        + +T++       + +  + +  + + L I E   ++  + L    
Sbjct: 297 AEGSVSDGSNTAQLHQVTEEFHNAFVHLNKARTDVGSRLSTLDIQEAQHDDFNMTLAKSK 356

Query: 310 NIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +I          ++   A  + S     +E S     K + L++ NY+
Sbjct: 357 SIF-------EDLDYAEAIIEFSENSRALEASQQAFGKTKDLTLFNYI 397


>gi|220913742|ref|YP_002489051.1| flagellar hook-associated protein 3 [Arthrobacter chlorophenolicus
           A6]
 gi|219860620|gb|ACL40962.1| flagellar hook-associated protein 3 [Arthrobacter chlorophenolicus
           A6]
          Length = 294

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 96/294 (32%), Gaps = 10/294 (3%)

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +   + L   QA L+S+Q+    +       +   +D+      A   R   ++  
Sbjct: 8   QTMAAAAQRNLQAGQAKLASLQEKGATLQN-----ITRPSDDPAALAAALATRGQLQAAD 62

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ--HL 183
            ++N   +G      +N+++  L       +  +    Q   G L + +K  +A +   L
Sbjct: 63  QYSNNISDGT---GWLNTADSALGQATNVLNRIRDLMLQASNGSLNQPAKDAIAAEIEGL 119

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
               + +       + +    SD          A +      ++     D +  V+  G 
Sbjct: 120 NKDLLASANTKYLGRNVFAGNSDAAAAFTGQPPAFNGTPVSSVERRVDADRTVRVDADGG 179

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                 A      +   +            L  V   L  +I  RA +G  +  + + R 
Sbjct: 180 AIFGDGAGSVFALVGDVVAAIRAGADPSGRLDAVDDRLKTVISGRAEVGTRQSLLEQARD 239

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +  +   +++  S     +       L       +++  +T K+ + S++++L
Sbjct: 240 AVAAQKVTLESRRSAIEDADIGQVVLDLKLQETNYQVALAVTAKVLQPSLMDFL 293


>gi|15964425|ref|NP_384778.1| flagellin protein [Sinorhizobium meliloti 1021]
 gi|307311567|ref|ZP_07591208.1| flagellin domain protein [Sinorhizobium meliloti BL225C]
 gi|17366554|sp|Q52943|FLAC_RHIME RecName: Full=Flagellin C
 gi|15073602|emb|CAC45244.1| Flagellin C [Sinorhizobium meliloti 1021]
 gi|306899584|gb|EFN30213.1| flagellin domain protein [Sinorhizobium meliloti BL225C]
          Length = 321

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 111/352 (31%), Gaps = 44/352 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T+          + +N +       + +G   +      A  +       +   ++
Sbjct: 2   TSIMTNPAAMAALQTLRAINHNLETTQGRISSGYRVETAADNAAYWSIATTMRSDNAALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T  + + ++  ++ ++   LV   E   D +K       L+    S
Sbjct: 62  TVHDALGLGAAKVDTFYSAMDTVIDVMTEIKAKLVAASEPGVDKDKINKEVAELKSQLNS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N        +    + A      ++  F      +  A   +
Sbjct: 122 AAQSAS--------FSGEN--------WLYNGASAALGTKSIVASF------NRSADGSV 159

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            VS++N       +  + D                   +  +  + + +  +     R  
Sbjct: 160 TVSTLNYDTAKSVLIDVTDPARG---------------MLTKAVNADALQSTPTGTARNY 204

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
             ++             + +         M+S V + +S + +  A LG     I  +  
Sbjct: 205 -YLIDAGAAPAGATEIEIDNATTGAQLGDMISVVDELISQLTDSAATLGAITSRIEMQES 263

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+ N  ++ID  + + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 264 FVANLMDVIDKGVGRLVDADMNEESTRLKALQTQQQLG------IQSLSIAN 309


>gi|254227990|ref|ZP_04921420.1| flagellar hook-associated protein 3 [Vibrio sp. Ex25]
 gi|262396028|ref|YP_003287881.1| flagellar hook-associated protein FlgL [Vibrio sp. Ex25]
 gi|151939486|gb|EDN58314.1| flagellar hook-associated protein 3 [Vibrio sp. Ex25]
 gi|262339622|gb|ACY53416.1| flagellar hook-associated protein FlgL [Vibrio sp. Ex25]
          Length = 299

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 123/357 (34%), Gaps = 65/357 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNH 61
           IS +   + M    +  N     + ++M TG    + SD  +        +L  ++E + 
Sbjct: 3   ISDNQFSQMMLQSLQGNNAGLGHVLQQMTTGERLTKLSDDPMA----SIKLLNLDRENSA 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           IA+  ++ + V   LS+ + HL S+++ +  M    +    G   +         L+   
Sbjct: 59  IAQYQNNIANVKTTLSSQETHLDSVKESLMSMRDIALWGANGSLTDQDRTGMITELKSYR 118

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +S  +  N  DE G YLFSG  +    +N           S   +++G  ++   ++  G
Sbjct: 119 DSIESSFNAQDEEGHYLFSGTKTDTPAIN---------SASGSYVIEGNSDKRVVTIAKG 169

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
             ++ S+M A+ + D                         N+  +I +            
Sbjct: 170 VTMD-SNMTAKDILDLGGG--------------------KNVLDQINN------------ 196

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                      + TEF + +             LS +   L+ ++     +G    N++ 
Sbjct: 197 -----------LITEFENPSPN---FQAEVDASLSAIDDTLASVLGTMTEIGGRHNNLDL 242

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                      +D        ++   A  +LS  +  ++ +     K+  LS+ + L
Sbjct: 243 VGGAHGENKLFVDKVSGDLSALDYGEASVRLSNYMAALQATQASYVKINDLSLFDRL 299


>gi|307318922|ref|ZP_07598353.1| flagellin domain protein [Sinorhizobium meliloti AK83]
 gi|306895336|gb|EFN26091.1| flagellin domain protein [Sinorhizobium meliloti AK83]
          Length = 321

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 111/352 (31%), Gaps = 44/352 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T+          + +N +       + +G   +      A  +       +   ++
Sbjct: 2   TSIMTNPAAMAALQTLRAINHNLETTQGRISSGFRVETAADNAAYWSIATTMRSDNAALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T  + + ++  ++ ++   LV   E   D +K       L+    S
Sbjct: 62  TVHDALGLGAAKVDTFYSAMDTVIDVMTEIKAKLVAASEPGVDKDKINKEVAELKSQLNS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N        +    + A      ++  F      +  A   +
Sbjct: 122 AAQSAS--------FSGEN--------WLYNGAAAALGTKSIVASF------NRSADGSV 159

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            VS++N       +  + D                   +  +  + + +  +     R  
Sbjct: 160 TVSTLNYDTAKSVLIDVADPARG---------------MLTKAVNADALQSTPTGTARNY 204

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
             ++             + +         M+S V + +S + +  A LG     I  +  
Sbjct: 205 -YLIDAGAAPAGATEIEIDNTTTAAQLGDMISVVDELISQLTDSAATLGAITSRIEMQES 263

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+ N  ++ID  + + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 264 FVANLMDVIDKGVGRLVDADMNEESTRLKALQTQQQLG------IQSLSIAN 309


>gi|146335608|gb|ABQ23407.1| FlgL [Pseudomonas syringae pv. averrhoi]
          Length = 530

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  +E  N   +    + +K  EE+ +G   +           +L+  Q  + + + 
Sbjct: 3   ISTTQFYESTNTNYQRTYSNVLKTSEEVSSGIKLNTASDDPVGAARVLQLAQHNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   +  S+  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ASNIGTINTNIVNSETALTSIVDTMQTAREVIVSAGNGAYTDSDRLAKAAELKQYQSQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+F+G  SS  P
Sbjct: 123 GLMNSQDSNGQYIFAGSKSSAPP 145


>gi|77463645|ref|YP_353149.1| flagellar hook-associated protein 3 FlgL [Rhodobacter sphaeroides
           2.4.1]
 gi|77388063|gb|ABA79248.1| flagellar hook-associated protein 3 FlgL [Rhodobacter sphaeroides
           2.4.1]
          Length = 409

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 80/300 (26%), Gaps = 27/300 (9%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM 130
            +  R       L +        V     +     D       +  LR +          
Sbjct: 123 ALANRKDAMGQGLFAGYAAGPAFVKEGDAVRFAGNDGQPVAQLSETLRVA---------T 173

Query: 131 TDEGQYLFSGINSSEKPLNGYFTKD-------------SLAKKSFDQMLQGFLEENSKSL 177
           +  G  +F  + +   P + +   D             S  + + D          + + 
Sbjct: 174 SLGGAEVFMAVPTEAGPRSVFDLADDLVATLSVPLAHSSPQRSAEDTARLSLAAPPAPAT 233

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237
           +           + ++   +        +        +   + +    +     I VS  
Sbjct: 234 VRFTLTGPGG--SVEIEQRLPGSALAAINAASAQTGVTATEEPDGTLVLGAVGRITVSDM 291

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
                 RD++       +     +                   +S + EQRA  G    +
Sbjct: 292 SRSDDPRDVLATFTSADDKGGWIMPARFDAASLTDAFDA---AVSHMAEQRARAGAFAAS 348

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++ +   ++ +   I T I     ++   A  +L  L+   E +     K+   S+ +YL
Sbjct: 349 VDTQADAIRTRQTRIATAIGGLEDLDVAEAVTRLQQLLLTQEAAQQTYVKIANRSLFDYL 408


>gi|126462477|ref|YP_001043591.1| flagellar hook-associated protein 3 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104141|gb|ABN76819.1| flagellar hook-associated protein 3 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 409

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 81/299 (27%), Gaps = 25/299 (8%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM 130
            +  R       L +        V     +     D       +  LR +          
Sbjct: 123 ALANRKDAMGQGLFAGYAAGPAFVKEGDTVRFAGNDGQPVAQLSETLRVA---------T 173

Query: 131 TDEGQYLFSGINSSEKPLNGYFTKD------------SLAKKSFDQMLQGFLEENSKSLL 178
           +  G  +F  + +   P + +   D            S  ++S +            +  
Sbjct: 174 SLGGAEVFMAVPTEAGPRSVFDLADDLVATLSVPLAHSSPQRSAEDA-ARLSLAAPPAPA 232

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
             +      + + ++   +        +        +   + +    +     I VS   
Sbjct: 233 TVRFTLTGPVGSVEIEQRLPGSALAAINAASAQTGVTATEEPDGTLVLGAVGRITVSDMS 292

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
                RD++       +     +                   +S + EQRA  G    ++
Sbjct: 293 RSDDPRDVLATFTSADDKGGWIMPARFDAASLTDAFDA---AVSHMAEQRARAGALAASV 349

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +   ++ +   I T I     ++   A  +L  L+   E +     K+   S+ +YL
Sbjct: 350 DTQADAIRTRQTRIATAIGGLEDLDVAEAVTRLQQLLLTQEAAQQTYVKIANRSLFDYL 408


>gi|289548870|ref|YP_003473858.1| flagellar hook-associated protein 3 [Thermocrinis albus DSM 14484]
 gi|289182487|gb|ADC89731.1| flagellar hook-associated protein 3 [Thermocrinis albus DSM 14484]
          Length = 388

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 114/400 (28%), Gaps = 68/400 (17%)

Query: 9   SSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHS 68
             IF  +     ++ +       E+ TG+             +++  ++E   +++   +
Sbjct: 6   YFIFSLLKEQEAKVRRQLEDKILEVSTGRKVRSISDEPNVTFNVISLKKEVAQLSQYSKN 65

Query: 69  NSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT-DNNKFPINAGMLRDSYESFVTF 127
                  L+ +   L  M+ +++     +V      T    +    A  +  + ++ +  
Sbjct: 66  RLFSDTYLAYTDFTLGKMEDLLKGAYSNVVRAKNSATLTPQELKATADGMYATLKALLDR 125

Query: 128 ANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSS 187
           AN      ++FSG +   +P     T D +A     Q+           L  G+    SS
Sbjct: 126 ANDKLGQVFVFSGTDLERRPF-DETTLDYVASPQDFQVWISDSTSIPTVLSGGEVFYTSS 184

Query: 188 MNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM 247
                            S   Y +   S  S   I   +  T  +++S     +      
Sbjct: 185 ---------------TLSKATYLSPTQSFTSSGTITITVGAT-TVNISYGAQNQPQSIEE 228

Query: 248 FVAVIGTEFL--------------------------------SKNLTDGARNVLTKKMLS 275
             + +   +                                 +  L+ G ++    + + 
Sbjct: 229 LASYMNASYGNLLGALVSQNPDGSYSLLIYSKDPSSKLTLSATGELSVGFQDTNVLQAVK 288

Query: 276 TVQQGLSG------------------IIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
            V   LS                   +   RA +G     +   +   +N  +I+    S
Sbjct: 289 RVADKLSSGLYPDESDLFLIERSYSTVSAWRAKVGSVLAVVRNMQDLQENSMDILQARKS 348

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                +   +  + +      E    I    + L+IL Y+
Sbjct: 349 DLEDADLPQSVLEYTRYRIAYEALMRIVADQKDLTILRYI 388


>gi|294339835|emb|CAZ88198.1| putative flagellin FlgL [Thiomonas sp. 3As]
          Length = 417

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS  +                L +++ TG +              +    + N +A  
Sbjct: 3   ISTSQFYAASLTGILNQQNTLNTLSQQLSTGSTLVNPSDQPVAAAQNVALTGQINRLAGY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L    A L S+  +V       V +  G   +      A  ++   +   
Sbjct: 63  AQNGQNAQNSLQLESATLQSVTTLVSQARQLAVQMNNGTVSSQDLQNAAATMQGYVQQLA 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPL 148
            +AN  D  G YLF+G  S  +P 
Sbjct: 123 QYANTQDGQGNYLFAGSKSGAQPF 146


>gi|227820868|ref|YP_002824838.1| flagellin protein FlaD [Sinorhizobium fredii NGR234]
 gi|227339867|gb|ACP24085.1| flagellin protein FlaD [Sinorhizobium fredii NGR234]
          Length = 320

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 117/353 (33%), Gaps = 47/353 (13%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + +N++  +    + +G   +      A  +       +   ++
Sbjct: 2   TSIMTNAAAMAALQTLRSINRNLDETQSRVSSGYRVETAADNAAYWSIATTMRSDNAALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+ A L ++  ++ ++   LV   E   D  K       L+   E 
Sbjct: 62  TVQDALGLGAAKVDTAYAALDTVIDLMSEVKAKLVAAREPGVDKTKIDKELAQLK---EQ 118

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
            V+ A         FSG N        +   D+        ++  F      +  A   +
Sbjct: 119 LVSAAQSAS-----FSGEN--------WLYNDAATAVGTKSIVASF------NRSADGSV 159

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            V++++       +  ++D              AS   +          D   +      
Sbjct: 160 SVTTLDYDTSGSILVDVQD--------------ASRGLLT----MAVDADTLVSAPTGSA 201

Query: 244 RDIMFVAVIGTEFLSK-NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
           R+   +        ++  L++   +     M+S V   +S +    A LG     I  + 
Sbjct: 202 REYYLIDAGSPPAGTEIALSETTTDEELDDMISVVDDLVSQLTNSAATLGAITSRIEMQE 261

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
            F+ N  ++ID  + + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 262 NFVANLMDVIDKGVGRLVDADMNEESTRLKALQTQQQLG------IQSLSIAN 308


>gi|56421671|ref|YP_148989.1| flagellar hook-associated protein FlgL [Geobacillus kaustophilus
           HTA426]
 gi|56381513|dbj|BAD77421.1| flagellar hook-associated protein 3 [Geobacillus kaustophilus
           HTA426]
          Length = 297

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/352 (11%), Positives = 99/352 (28%), Gaps = 58/352 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ S +   M        +   +   ++ TG+               + +      + + 
Sbjct: 3   ITQSMLANNMLKQITRSYEKLDQYQTQLSTGKKITRPSDDPVVAMKGIAYRSNLAEVEQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S     +  S + L    + +Q +   +V       +  +    A  +R   E  V
Sbjct: 63  KRNFSEAYNWVENSDSALDKATQALQRIRELVVQASNDTYEETQRQSIAKEVRQLTEHLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
           T AN     +Y+F+G  ++E P+      D     S +             +        
Sbjct: 123 TIANTKVGDKYIFNGAKTTEPPVT--VNPDGTISVSTNSQQLNIELAKGIYIPVNIPPST 180

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           +      +   ++ L     +                            S   N      
Sbjct: 181 AFGAGSGLFSDLQNLAASLENP---------------------------STTGND----- 208

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
                   T +L K L     N+L  +           +  +   + + E  I       
Sbjct: 209 -------LTGYLDK-LDSHLTNLLGVRA---------ELGARMNRIELMEDRI------- 244

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++  I +  +S +  V+       L T  +    +  +  ++ + +++++L
Sbjct: 245 DSQQVIAEKMLSDNEDVDLEKVITDLKTQESVHRAALAVGARVIQPTLVDFL 296


>gi|89072307|ref|ZP_01158886.1| flagellar hook-associated protein [Photobacterium sp. SKA34]
 gi|89051839|gb|EAR57291.1| flagellar hook-associated protein [Photobacterium sp. SKA34]
          Length = 299

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 101/307 (32%), Gaps = 57/307 (18%)

Query: 52  ILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFP 111
           +L  ++E + I +   + S V   LS+ + HL +    ++DM   L++   G   +    
Sbjct: 49  LLNLDRENSAINQYQDNISNVKTALSSQEVHLMAASDTIKDMRDSLLLASNGALSDADRE 108

Query: 112 INAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFL 170
             A  L    ++F++  N+ DE G YLFSG  S    +                + +G  
Sbjct: 109 SYANKLVSLRDAFMSSFNVQDEEGNYLFSGTQSDVPAITSQPAGG--------YIFEGNS 160

Query: 171 EENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
           ++   ++  G  +E +  + + +                  NN  N  D  I      T 
Sbjct: 161 DKRVVTVAKGVTMEANFASQEILDLG--------------GNNILNQIDAAITELQAPTV 206

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
            I+ +                                      L+T+      ++     
Sbjct: 207 NINNTLQAT----------------------------------LNTLDTTHDNVLAAVTD 232

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
           +G    N++       +    ++   +    ++   A  +L+  +  ++ +     K+  
Sbjct: 233 IGGRHNNLDLMETSHGDNKLFVEAVTNDLEALDYGEASVRLNNYMAALQATQASYMKIND 292

Query: 351 LSILNYL 357
           LS+ N L
Sbjct: 293 LSLFNRL 299


>gi|332161329|ref|YP_004297906.1| flagellar hook-associated protein FlgL [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318605250|emb|CBY26748.1| flagellar hook-associated protein FlgL [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325665559|gb|ADZ42203.1| flagellar hook-associated protein FlgL [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 326

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 116/349 (33%), Gaps = 31/349 (8%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++            ++  +++ TG+            +  +   Q ++   + 
Sbjct: 3   LSTSMLYQQNMQGVTNAQSLWMQSGQQLSTGKRVVNPSDDPMAASQAVMVSQSQSENNQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S   +  S     LS     +Q +   ++   +    ++     A  L+   +  +
Sbjct: 63  TLARSFARQSSSLETTVLSQATSTIQSIQSLIIGAAKDSLSDDDRASMATQLQGLKDQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F G  S + P     T   +     D  +Q  ++ N    +      
Sbjct: 123 NQANSTDGNGRYMFGGFQSDKAPFAVSNT-GEVTYVGGDVAIQQRVDSNRTMTVGHTGSS 181

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V                   + +     N  N      +  I +T             ++
Sbjct: 182 V---------------FMALTSNATPEPNDVNGDPVAAESNIFNTI---------DTVLK 217

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
            +       T+ + +  +D        K +  +   L+ ++  +A +G   + ++     
Sbjct: 218 SLKTPLQGATDAVKQQASDE-----MDKGIRGMANSLNNVLSVQAEIGTQLQELDSLDSL 272

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++  I    +S    V+ ++A +        ++ SY   T +Q LS+
Sbjct: 273 GSDRTLINKQRLSDLQDVDWNSAISSYVMQQAALQASYTTFTNMQGLSL 321


>gi|330961206|gb|EGH61466.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 530

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  +E  N   +    +  K  EE+ +G   +         + +L+  Q+ + + + 
Sbjct: 3   ISTTQFYEATNTNYQRNYANLNKTSEEVSSGIKLNTASDDPVGASRVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   + +++  L+S+   +Q     ++    G   +++    A  L+      +
Sbjct: 63  AANIGTINTNVVSTETALTSIIDTMQSAREEIISASNGVNTDSERLTKAESLKQYQGQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+ +G  SS  P
Sbjct: 123 ALMNSKDANGQYILAGSKSSTPP 145


>gi|15964422|ref|NP_384775.1| flagellin A protein [Sinorhizobium meliloti 1021]
 gi|307311564|ref|ZP_07591205.1| flagellin domain protein [Sinorhizobium meliloti BL225C]
 gi|17366437|sp|Q03841|FLAA1_RHIME RecName: Full=Flagellin A
 gi|152224|gb|AAA26279.1| flagellin A [Sinorhizobium meliloti]
 gi|15073599|emb|CAC45241.1| Flagellin A [Sinorhizobium meliloti 1021]
 gi|306899581|gb|EFN30210.1| flagellin domain protein [Sinorhizobium meliloti BL225C]
          Length = 394

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/392 (13%), Positives = 117/392 (29%), Gaps = 50/392 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + ++         + +G          A  +       +   ++
Sbjct: 2   TSILTNNSAMAALSTLRSISSSMEDTQSRISSGLRVGSASDNAAYWSIATTMRSDNQALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+ + + S  ++V+++   LV   E   D  K       L+D   S
Sbjct: 62  AVQDALGLGAAKVDTAYSGMESAIEVVKEIKAKLVAATEDGVDKAKIQEEITQLKDQLTS 121

Query: 124 FVTFANMTDEGQY-----LFSG--------------------------INSSE------- 145
               A  +  G+      L  G                          +N+         
Sbjct: 122 IAEAA--SFSGENWLQADLSGGPVTKSVVGGFVRDSSGAVSVKKVDYSLNTDTVLFDTTG 179

Query: 146 -KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKF 204
              +       S A  +    + G   E +        L  +S       D+        
Sbjct: 180 NTGILDKVYNVSQASVTLPVNVNGTTSEYTVGAYNVDDLIDASATFD--GDYANVGAGAL 237

Query: 205 SDD-EYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTD 263
           + D      +W  A D     +    +       V+                  + ++T 
Sbjct: 238 AGDYVKVQGSWVKAVDVAATGQEVVYDDGTTKWGVDTTVTGAPATNVAAPASIATIDITI 297

Query: 264 GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
            A+      +++ V + L+ +    A LG     I+ +  F+   ++ ID+ + + +  +
Sbjct: 298 AAQAGNLDALIAGVDEALTDMTSAAASLGSISSRIDLQSDFVNKLSDSIDSGVGRLVDAD 357

Query: 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
            +    +L  L  + +++      +Q LSI N
Sbjct: 358 MNEESTRLKALQTQQQLA------IQALSIAN 383


>gi|330972422|gb|EGH72488.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 530

 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  FE  N   +    +  K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFFESTNTNYQRNYSNLNKTSEEVSSGIKLNTAGDDPVGAARVLQLTQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +     T++  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ETNIGTINTNAVTTETTLTSIIDTMQAAREQIVSAGSGAFTDSDRLAKASALKQYQSQIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+FSG  +S  P
Sbjct: 123 GLMNSQDPNGQYIFSGSKASTPP 145


>gi|327480027|gb|AEA83337.1| flagellar hook-associated protein FlgL [Pseudomonas stutzeri DSM
           4166]
          Length = 519

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 9/148 (6%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IST   F       +    ++ +  E++ TG      +D  +        +L+ +Q++N 
Sbjct: 3   ISTLQAFNNGVAGLQRNYANATRTQEQISTGNRILTPADDPVA----SVRLLQLDQQQNV 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           +++   + +     L+  +  L+S+  ++Q +    V    G          A  LR+  
Sbjct: 59  LSQYNANLTAAKNSLTQEEVTLNSVNTVLQRVRELAVQAGNGGLSAEDRKSIAAELRERE 118

Query: 122 ESFVTFANM-TDEGQYLFSGINSSEKPL 148
           +  ++  N     G+YLFSG     +P 
Sbjct: 119 DELLSLMNTRNARGEYLFSGFQGKTQPF 146


>gi|163783193|ref|ZP_02178187.1| flagellar hook associated protein FlgL [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881527|gb|EDP75037.1| flagellar hook associated protein FlgL [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 481

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 61/189 (32%), Gaps = 13/189 (6%)

Query: 21  ELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRL 76
            + K+  +   E+ TG+     SD  +       ++L  +++   +++   +       L
Sbjct: 18  RIRKEIARKTIEIATGKRIHNLSDDPVA----TFNVLSLKKDIAQLSQFSKNRLFSDVNL 73

Query: 77  STSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQY 136
           S     L  M   ++ +    V         +          ++    +  AN      Y
Sbjct: 74  SYIDFTLDKMSTKIKYLYTKAVQAKNELNTTDALRAVGVEFGEALSFLLDRANEKVGENY 133

Query: 137 LFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDF 196
           +FSG   + KP       +S   +   +     ++E +   +      V S N  QM   
Sbjct: 134 IFSGSALTTKPFT-----NSFVYQGSQETFNVQIDETNFVEVFSAGSSVFSANVYQMDTL 188

Query: 197 IKQLEDKFS 205
               +  F+
Sbjct: 189 FSSPDTAFT 197



 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 84/260 (32%), Gaps = 30/260 (11%)

Query: 104 KTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFD 163
               N+        + S    VT  N    G+ + + I +   P   Y  + S       
Sbjct: 246 DNSMNEVARITNYGQYSLNDLVTQINTAFGGENITASIVT--NPDGTYTLRVSD------ 297

Query: 164 QMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK 223
                    +S +    +    + + +  + +F+K        D           +    
Sbjct: 298 --------GDSPANNFIEDTSGNVLESNNLQNFVKIFNGISPGDVN--AFVHQVPNGQYT 347

Query: 224 YRIKDTEGIDV-SANVNMRGIRDIMFVAVI-----GTEFLSKNLTDGARNVLTKKMLSTV 277
            R+   +     S + +   + +     +        + LS  L     ++L       +
Sbjct: 348 LRLAPEDVSTTLSVSFSGTALGNFSTPNIFQLINEVKDKLSGGLAPDDSDLLA------I 401

Query: 278 QQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINK 337
           Q+    ++ +R+  G     + +++   +N+ +++    S +  VE   +  + +     
Sbjct: 402 QRAYDKVVSERSRFGSILSQVKDQQPVQENRMDVLRKQKSDTEEVELSESIMEYTRYRTA 461

Query: 338 IEMSYMITTKLQKLSILNYL 357
            E    I T+ + ++IL Y+
Sbjct: 462 YEALMRIVTESRDMTILRYI 481


>gi|291280512|ref|YP_003497347.1| hypothetical protein DEFDS_2144 [Deferribacter desulfuricans SSM1]
 gi|290755214|dbj|BAI81591.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1168

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 95/247 (38%), Gaps = 30/247 (12%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS-----SDYGLQLGARVTSILEW 55
           M+ T  +T  I  + NI  ++  +     ++++  G++     SD          S +  
Sbjct: 1   MRVTF-NTLYIKNQNNI--RKSLERMTLANDKVNKGRNLLAPESDP-----VYYASAINI 52

Query: 56  EQEKNHIAERLHS--NSL--VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFP 111
           ++  + + +   +  N+L  +T   +  Q   S + K   +     +  L    +     
Sbjct: 53  QRMIDEMDQFKRNADNALTWITNEDNELQNASSLISKAKNEY---ALAGLNDSQNETSRK 109

Query: 112 INAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLE 171
             AG +++  +S V+  N    G+Y+F+G  +  KP +  +    +   S D   QG   
Sbjct: 110 ALAGDVKNILDSMVSIGNANYFGRYIFAGYKTDTKPFS--YDDKEIKGVSVDSGSQGVEI 167

Query: 172 ENSKSLLAGQHLEVSSMNAQQMT-----DFIKQLEDKFSDDEYWANNWSNASDHNIKY-R 225
              ++    + L+  +            D IK +    S ++ + +  SN+SD + K   
Sbjct: 168 IKKRTFADLKELDEGNYTVDIQKVNGSADLIKVILYDSSGNKVFID--SNSSDESAKNGN 225

Query: 226 IKDTEGI 232
           I  TE  
Sbjct: 226 ITTTEMT 232


>gi|323498413|ref|ZP_08103409.1| flagellar hook-associated protein FlgL [Vibrio sinaloensis DSM
           21326]
 gi|323316486|gb|EGA69501.1| flagellar hook-associated protein FlgL [Vibrio sinaloensis DSM
           21326]
          Length = 397

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/401 (11%), Positives = 119/401 (29%), Gaps = 57/401 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q+K  
Sbjct: 5   ISSFHNYQSVQNDLRRQESKVHHNQAQLASGKKLMKASDDPLA----THYIQNIGQQKEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + +   +  L   RL   +  +S+ ++   +    ++ ++ G             + +  
Sbjct: 61  LRQYSDAIVLTRNRLEHHEVIISNAEEFADEAKRTVMEMINGALSPEDRFAKRREIEEIS 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+   N+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 NNFLNLVNVQDESGNYIFAGTKPKNQPFFRDKDADVVYAGDDYQRKMKISNSLEMPINDP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-SMNAQQMT----DFIKQLEDKFS---- 205
            S      D     F  +      +   LE + ++N    +     F+   E K+     
Sbjct: 181 GSKLFMEIDNPFGDFSPKYDLKEASELLLERAINLNPDDQSTYKVTFVDMPEGKYGYQLE 240

Query: 206 -DDEYWANNWSNASDH--------NIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF 256
            D      +  + S           +K +I   + I++                      
Sbjct: 241 RDGSVVQADTFDPSKGIKYEDVTIQVKGQITKGDAIELEPQRTYSIFETFKEAM----AL 296

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
              +++D +      ++          + + R  +G     ++ +    ++    +    
Sbjct: 297 SEGSVSDSSNTAQLHQITQEFHAAFIHLNKARTDVGARLSTLDIQEEQHEDFKMTLAKSQ 356

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           S    ++   A  + +     ++ S     K + L++ NY+
Sbjct: 357 SNFEDLDYAAAIIEFNENSRALQASQQAFGKTKDLTLFNYI 397


>gi|91201246|emb|CAJ74306.1| similar to flagellar hook-associated protein FlgL [Candidatus
           Kuenenia stuttgartiensis]
          Length = 305

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/359 (12%), Positives = 117/359 (32%), Gaps = 67/359 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ +S+        +   K   ++ E++ +G+  +           +L ++  +N + + 
Sbjct: 5   VTQASLSNTTLSNIQLNYKKMQEIQEKLSSGKQINRASDDPVSTRKLLGFKSGENELQQY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           L +      +++     L ++Q I+  +    V   +G   +++  I A  + +  E+ +
Sbjct: 65  LDAIKHARDKINFIFDALENIQDIMVKIQTKTVQAADGTLGDSERGIIASEIDELMETII 124

Query: 126 TFAN-MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
            F+N     G+YLFSG  +   P                         +S   + G   +
Sbjct: 125 QFSNITDSNGRYLFSGTKTLTAPFR--------------------ATRDSGGEITGVKYD 164

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +                                +  I+Y+I           VN  G +
Sbjct: 165 GN--------------------------------NETIQYQIGSN----TFIQVNQPGGK 188

Query: 245 DIMFVAVIGT------EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
             M   +         E    +    A   L++K     +   + ++ +    G     +
Sbjct: 189 LFMENGIFANLINLRDELKKSDFDTDAF--LSQK--KNFETANNNVLTEITKFGAKVDRL 244

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 ++N    +   IS +   +  +   +L    N ++ +     ++ + S+L+++
Sbjct: 245 AITENRVENSKIALKELISYTEDADLASLITELKNQENVLQAALQTGARIIQPSLLDFI 303


>gi|30248329|ref|NP_840399.1| flagellar hook-associated protein FlgL [Nitrosomonas europaea ATCC
           19718]
 gi|30138215|emb|CAD84223.1| Flagellin, N-terminus [Nitrosomonas europaea ATCC 19718]
          Length = 299

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS+++++      +      +L + + TG+                E  Q  +   + 
Sbjct: 3   VSTSTLYDQGTRSMLQQQDSLFRLQQHLSTGKRIMTPSDDPIGAARAHELAQSLSLNTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L    + L S+  ++Q +    V +      +++  + A  LR  ++  +
Sbjct: 63  ADNRYRAADSLQQVDSTLGSVSNLIQSVRTMAVAVGNSAFSDSERKMMAVELRGHFDELL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPL 148
             AN  DE G YLFSG   + +P 
Sbjct: 123 GLANTKDEQGNYLFSGFKGNTRPF 146


>gi|154250317|ref|YP_001411142.1| flagellar hook-associated protein 3 [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154253|gb|ABS61485.1| flagellar hook-associated protein 3 [Fervidobacterium nodosum
           Rt17-B1]
          Length = 297

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 51/145 (35%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + I ER     ++      ++H+++ +G+   Y        T           + + 
Sbjct: 3   ITNNMINERSLFNIQQSLYRIARMHDKLSSGKEVQYPSDDAVIATRASNISSRLRELEQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   + +    L  +  +   +   +V    G    ++    A  L+   E  +
Sbjct: 63  KRNVDHINNFVQSYDTTLQELSDLYHRVRELMVRGANGTNTVDERNAIAAELKAIKEHLI 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNG 150
             +N     +++F G  S  KP++ 
Sbjct: 123 EVSNTRVGDEFIFGGARSELKPVDE 147


>gi|310644333|ref|YP_003949092.1| flagellin-like protein [Paenibacillus polymyxa SC2]
 gi|309249284|gb|ADO58851.1| Flagellin-like protein [Paenibacillus polymyxa SC2]
          Length = 306

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/337 (10%), Positives = 96/337 (28%), Gaps = 49/337 (14%)

Query: 21  ELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQ 80
             ++       +M TG+  +        +T  L +  E +   +   +       L  + 
Sbjct: 18  RNSERMNNTQNQMSTGRKLNKPSDDPVGITYSLRYRSELSSNEQYQRNVDSAVSWLDFND 77

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
             +    +I+Q +    V    G    +        +    E  +   N    G+Y+F+G
Sbjct: 78  TVMDQAGQIMQRVRELTVQASTGTNPQSALDSINKEIGQLKEQMIDVVNSQLNGKYIFNG 137

Query: 141 INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200
               +KP    +     A  + D      +  ++ ++       V+              
Sbjct: 138 QTYDKKP----YDLPLNADNTHDTSGAASIATDTGNVNFIVGENVA-------------- 179

Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN 260
                                +   +   E +  SA+ +         +  I  +  S  
Sbjct: 180 ---------------------LPINVTGNEVVGTSADADN--------LFTIFNQLSSSL 210

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
            +   +       L+ +   +  +++ ++ +G     +   +  L +    +    SK+ 
Sbjct: 211 ASGDIKTS--GDQLANIDSRMDKMLKVQSEMGAKSNRVELMQNRLSDLEVNLTDLQSKTE 268

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +            N    S     K+   S++++L
Sbjct: 269 DADYAELLMNSKIQENIYNASLSAGAKIISASLVDFL 305


>gi|116250493|ref|YP_766331.1| flagellin C [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255141|emb|CAK06215.1| flagellin [Rhizobium leguminosarum bv. viciae 3841]
          Length = 320

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/334 (10%), Positives = 101/334 (30%), Gaps = 38/334 (11%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           TS+       + + +NK++ +  +++ +G   +      +  +       +  ++     
Sbjct: 6   TSAAAVNALAVLRSINKEASQTQQQVSSGYRIETAADDASYWSVATVMRSDSTNLGTVGD 65

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           +  L   ++  +   ++S   ++ ++   LV   E  TD +K        ++  ++ V  
Sbjct: 66  ALGLGAAKVDATYTAMNSAIDLIGEIRAKLVSAREPGTDKDKINAEISEYKEQLQTIVES 125

Query: 128 ANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSS 187
              +  G+               +      A      ++ GF+   +    A      SS
Sbjct: 126 --TSFAGE--------------NWLLNGDTAAPPTWSIISGFVRAPTGEYQAQTIDFPSS 169

Query: 188 MNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM 247
                             D          AS   +   +      +       R    + 
Sbjct: 170 QT-------------ILIDKNN-------ASGGLLTKSVDANAINNSG--ATSRNYYLLN 207

Query: 248 FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN 307
             +          + +   +     ML      LS +    A +G+ +  I+++  +  +
Sbjct: 208 ANSTTPATGTEIAIDNNTTDAQLTDMLDVTDALLSSLTTTAASIGVMKTRIDDQIDYTAD 267

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
             + ID  +   +  +   A  +   +  + +M+
Sbjct: 268 LADSIDKSVGALVDTDMDEASIRQKAIETQKQMA 301


>gi|294140192|ref|YP_003556170.1| flagellar hook-associated protein FlgL [Shewanella violacea DSS12]
 gi|293326661|dbj|BAJ01392.1| flagellar hook-associated protein FlgL [Shewanella violacea DSS12]
          Length = 404

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 76/203 (37%), Gaps = 2/203 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ +F +      +    + K+ +++ +G+  +           I    Q+   + + 
Sbjct: 3   ISTAQMFNQSITSVLDKQSATSKVLDQLSSGKRVNTAGDDPVAAIGIDNLYQQNALVNQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +    T  L+ +++ L S + +V  +   ++  + G   +      A  +R S E  +
Sbjct: 63  IKNIDYATGHLAVAESKLGSAESLVSSIKDQVLRGVNGSLTDIDRVTIANEMRSSLEELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  G+Y+FSG  +S +P   + T  ++       + Q  +              
Sbjct: 123 SIANSRDESGKYIFSGNQTSTQPFA-FDTAGNIVYSGDSGVRQAVVASGVTVGTNLPGDS 181

Query: 185 VSSMNAQQMTDFIKQLEDKFSDD 207
           V    A  + DF          +
Sbjct: 182 VFMNAANAIGDFSVNYLPAQVGE 204


>gi|149182550|ref|ZP_01861022.1| flagellar hook-associated protein L [Bacillus sp. SG-1]
 gi|148849742|gb|EDL63920.1| flagellar hook-associated protein L [Bacillus sp. SG-1]
          Length = 286

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 78/210 (37%), Gaps = 13/210 (6%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQ 135
           +  S+A L      +Q +   ++               +  +    +  V  AN    G+
Sbjct: 67  MDHSEAGLDHATNALQRVRELVIQGKNDTYGEQDREAISQEIEQIKQDLVEVANTKVAGR 126

Query: 136 YLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTD 195
           Y+F+G N    P+            + +   + +L E S+ L    +++   + +Q++  
Sbjct: 127 YIFNGTNVDSAPV----AHGEPPVVTINT--EDYLVEVSQGLNLKANIDADQVFSQELFT 180

Query: 196 FIKQLEDKFSDDEYWANNWSNASDHNIKYRIK--DTEGIDVSANVNMRGIRD--IMFVAV 251
            ++ ++  FS D  ++ +  +    ++  +I     E  +  A  N   + D  +    V
Sbjct: 181 TLEDIKKTFSKD--YSADKMDKLLTDLDSKIGSLQAERSETGARYNRLEMIDDRLTKTEV 238

Query: 252 IGTEFLSKNLTDGARNVLTK-KMLSTVQQG 280
           +  + +S N       V+T  +   +V Q 
Sbjct: 239 MANQIISDNEDADIERVITDLRAQESVHQA 268



 Score = 43.9 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/120 (10%), Positives = 40/120 (33%)

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            N+   +          E + K  +         K+L+ +   +  +  +R+  G     
Sbjct: 166 ANIDADQVFSQELFTTLEDIKKTFSKDYSADKMDKLLTDLDSKIGSLQAERSETGARYNR 225

Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +      L     + +  IS +   +       L    +  + +  +  ++ + +++++L
Sbjct: 226 LEMIDDRLTKTEVMANQIISDNEDADIERVITDLRAQESVHQAALSVGARIIQPTLMDFL 285


>gi|123442777|ref|YP_001006754.1| flagellar hook-associated protein FlgL [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122089738|emb|CAL12591.1| flagellar hook-associated protein 3 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 326

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 117/349 (33%), Gaps = 31/349 (8%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++            ++  +++ TG+            +  +   Q ++  ++ 
Sbjct: 3   LSTSMLYQQNMQGVTNAQSLWMQSGQQLSTGKRVVNPSDDPMAASQAVMVSQSQSENSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S   +  S     LS     +Q +   ++   +    ++     A  L+   +  +
Sbjct: 63  TLARSFARQSSSLETTVLSQATSTIQSIQSLIIGAAKDSLSDDDRASMATQLQGLKDQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F G  S + P     T   +     D  +Q  ++ N    +      
Sbjct: 123 NQANSTDGNGRYMFGGFQSDKAPFAVSNT-GEVTYVGGDVAIQQRVDSNRTMTVGHTGSS 181

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V                   + +     N  N      +  I +T             ++
Sbjct: 182 V---------------FMALTSNATPEPNDVNGDPVAAESNIFNTI---------DTVLK 217

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
            +       T+ + +  +D        K +  +   L+ ++  +A +G   + ++     
Sbjct: 218 SLKTPLQGATDAVKQQASDE-----MDKGIRGMANSLNNVLSVQAEIGTQLQELDSLDSL 272

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++  I    +S    V+ ++A +        ++ SY   T +Q LS+
Sbjct: 273 GSDRTLINKQRLSDLQDVDWNSAISSYVMQQAALQASYTTFTNMQGLSL 321


>gi|37681984|gb|AAQ97872.1| FlgL [Photorhabdus luminescens]
          Length = 309

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 110/307 (35%), Gaps = 38/307 (12%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
            +  +   Q +    + + + S     +S   + +S    +VQD+   LV  + G   + 
Sbjct: 34  ASQGVMVAQAEAQNQQYITARSFAKNAISMQLSVVSKAVGVVQDIHESLVATVNGVLSDE 93

Query: 109 KFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ 167
                A  L    E  V   N TD  G+Y+F+G  +  KP     T  +++     + + 
Sbjct: 94  DRNSLAIQLTGFKEQLVNLGNTTDGNGRYIFAGYKTDMKPF-DESTTGTVSYLGGSEEIT 152

Query: 168 GFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIK 227
             ++ N   ++     +V          F+    +   + +       N S+ +I     
Sbjct: 153 QKVDSNRSMIIGHTGKQV----------FLSSTSNPIKEPDG------NQSESDIFK--- 193

Query: 228 DTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQ 287
               ID++         +             +   D A   L  K     +  L+ I   
Sbjct: 194 ---TIDMAIQSLKTPFVE-----------ADQKSRDDALE-LLNKANRGARNALNNISSV 238

Query: 288 RAVLGISEKNINEERVFLQNKNNIID-TYISKSIGVEQHTAHAQLSTLINKIEMSYMITT 346
            +VLG+ +    E+   L  + ++ + + +S+ + VE ++A +        ++ SY    
Sbjct: 239 ESVLGL-QLREMEDLDNLGAERSLANKSRLSQLVDVEWNSAISNYYQQQAVLQASYKTFA 297

Query: 347 KLQKLSI 353
            ++ +S+
Sbjct: 298 DMKGMSL 304


>gi|229541551|ref|ZP_04430611.1| flagellar hook-associated protein 3 [Bacillus coagulans 36D1]
 gi|229325971|gb|EEN91646.1| flagellar hook-associated protein 3 [Bacillus coagulans 36D1]
          Length = 297

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 46/127 (36%)

Query: 24  KDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83
               K  E++ +G+  +            + + +    + +   + +  +  + ++   L
Sbjct: 21  SKLAKYQEQLSSGKKINKLSDDPLSAMKGISYRRTVAQVKQYEDNFAEASTWIESTNDAL 80

Query: 84  SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS 143
               +++Q +    V               A  +    +  V  AN     +Y+F+G  +
Sbjct: 81  DEANQVLQRIRELTVEGATDTKTPTDRQSIADEVEQLRDQLVNIANTKVNDKYIFNGTRT 140

Query: 144 SEKPLNG 150
           +EKP++G
Sbjct: 141 TEKPISG 147


>gi|119947170|ref|YP_944850.1| flagellar hook-associated protein 3 [Psychromonas ingrahamii 37]
 gi|119865774|gb|ABM05251.1| flagellar hook-associated protein 3 [Psychromonas ingrahamii 37]
          Length = 296

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 1/145 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS S     M     + N +   L ++M TG+              ++  E+ +  I++ 
Sbjct: 3   ISDSHFTNTMLTGMSKSNTELSTLLQQMYTGEKITKPSDDPIATIKLMGLEKTQAEISQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +N  V       + H++++ + +Q     L+  L G             L   + S V
Sbjct: 63  KDNNENVKSGYQLYETHIANVVEGLQSTNELLLWGLNGTMTLEDRAGIVTELESLHASMV 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPLN 149
           +  N     G YLFSG  + +KP N
Sbjct: 123 STFNAKNSHGSYLFSGTATDQKPFN 147


>gi|150020230|ref|YP_001305584.1| flagellar hook-associated protein 3 [Thermosipho melanesiensis
           BI429]
 gi|149792751|gb|ABR30199.1| flagellar hook-associated protein 3 [Thermosipho melanesiensis
           BI429]
          Length = 295

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 48/152 (31%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   I ER     +       KLH+++ +G+   Y        T           + + 
Sbjct: 3   ITNGMINERTLFNIQHSLYRISKLHDKLSSGKEISYPSDDAVIATRASNISSRIRELKQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       ++   + +  +  +   +   +V    G  D  +    A  L    E   
Sbjct: 63  KRNVDHTQNFVNIYDSTIQELTNVYHRIKELIVRGANGVNDVAERESIAQELEKLKEHME 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSL 157
             AN    G+Y+F G  S  KP+     +   
Sbjct: 123 DIANTQLGGEYIFGGARSDLKPVENGKIQTPP 154


>gi|238927684|ref|ZP_04659444.1| flagellar hook-associated protein 3 [Selenomonas flueggei ATCC
           43531]
 gi|238884400|gb|EEQ48038.1| flagellar hook-associated protein 3 [Selenomonas flueggei ATCC
           43531]
          Length = 449

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKF--PINAGMLRDSYESFVTFANMTDE 133
           ++T+Q  LSSM+ I +      +       D +    P  A  ++   +  V+  N    
Sbjct: 73  MNTTQTALSSMEDIQKTFKAKTIQGANDDKDEHSGDWPAIAREMKAQIQQIVSLGNTQLG 132

Query: 134 GQYLFSGINSSEKPLNGYFTKDSLAK---KSFDQMLQGFLEENSKSLLAGQHLEVSSMNA 190
            +Y+FSG     +P +    K  L++   K+ D     F  + S    A    ++ S++ 
Sbjct: 133 DRYVFSGQADLRQPFSLSDEKKPLSRGLAKTLDDRQAAFFNDVSNGNSADFLHQMLSLDG 192

Query: 191 QQMTDF 196
                +
Sbjct: 193 SDGKTY 198



 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 29/89 (32%)

Query: 269 LTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
           L+   ++         ++     G   +        L +    I   I+     +     
Sbjct: 360 LSSDGITLADTANQVTLQAHTETGARTQLYKNMTEVLTDHKENITRDITNVSSADVAELA 419

Query: 329 AQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++      + MS  +  ++  LS+++YL
Sbjct: 420 MKMMQQQTIMSMSLSMGARILPLSLVDYL 448


>gi|146311253|ref|YP_001176327.1| flagellar hook-associated protein FlgL [Enterobacter sp. 638]
 gi|145318129|gb|ABP60276.1| flagellar hook-associated protein 3 [Enterobacter sp. 638]
          Length = 317

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 111/349 (31%), Gaps = 40/349 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  ++++      E     +   E+M TG+  +         +  +   Q ++   + 
Sbjct: 3   ISTQMMYQQNMRGITESQSKWLGYGEQMATGKRVNRPSDDAIASSQAIVLSQAQSQNEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +   +++S     L+ +   +      +V    G   ++     A  L+   +  +
Sbjct: 63  KLGRTFAKQKVSLEDNVLNQVNVAITSAQEKIVYAGNGTLSDDDRLSLASDLQGIRDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+++F+G  +   P +      S   +   Q      + +S   +A  H  
Sbjct: 123 NLANSTDGNGRFIFAGYKTETAPFDSATGTYSGGTEPITQ------QVDSARNMAISH-- 174

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
                 +Q+ + I     +     Y   N     D  I                      
Sbjct: 175 ----TGKQIFESITSNAQEVPGGGYGEPNMFKILDTAI---------------------- 208

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                A +     + +     +    +     ++   + ++   A +G     ++     
Sbjct: 209 -----AALKVPVDTDSGAAATQKEALQTAAVGIKNTQNNVLTVVADVGTKLNELDTLDSL 263

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++       +S  + V+ + A +  +     ++ SY   T +Q +S+
Sbjct: 264 GADRTLGQTQQMSDLVDVDWNAAISSYTMQQAALQASYKAFTDMQGMSL 312


>gi|91776316|ref|YP_546072.1| flagellar hook-associated protein FlgL [Methylobacillus flagellatus
           KT]
 gi|91710303|gb|ABE50231.1| flagellin-like protein [Methylobacillus flagellatus KT]
          Length = 304

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 109/351 (31%), Gaps = 52/351 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+++++       +L  D  +L +++ + +               LE +  +    + 
Sbjct: 3   ISTNTLYQNGLSRLSQLQVDQDRLMQQISSKKRILTPADDPVGAARSLELQNSQRVNTQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       ++  + +L  +  ++      L        D+ +    A  L++  E+ V
Sbjct: 63  ERNRMFAENSMNAIEGNLQGVTDLLIAAKARLAEAGNASYDDVQRSYIAIDLQNDLEALV 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G YL++G ++   P               +Q+ Q  +  N +  +A     
Sbjct: 123 ALANAQDGSGNYLYAGYSTDTAPYT--LNAGGATYNGDNQVRQLQVSANRQLPVAENGPS 180

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V   N   +   +  + D                               V++  + + ++
Sbjct: 181 VFQANGNDVFAALATITDLL--------------------------QTPVTSPADAQALQ 214

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D +                             +Q  L  ++  RA  G + K I      
Sbjct: 215 DGLAA-----------------------ASDALQGTLDNVLTVRARNGSALKEIEALNSD 251

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
             +++      +S+   ++   A + L+     +E +         LS+ N
Sbjct: 252 GSSRDLQYAKSLSELQDLDYAKALSDLAKQQTVLEAAQKAFVATTSLSLFN 302


>gi|330943215|gb|EGH45622.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 465

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  FE  N   +    +  K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFFESTNTNYQRNYSNLNKTSEEVSSGIKLNTAGDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +     T++  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ETNIGTINTNAVTTETTLTSIIDTMQAAREQIVSAGSGAFTDSDRLAKASALKQYQSQIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+FSG  +S  P
Sbjct: 123 GLMNSQDPNGQYIFSGSKASTPP 145


>gi|312884827|ref|ZP_07744519.1| flagellar hook-associated protein FlgL [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367479|gb|EFP95039.1| flagellar hook-associated protein FlgL [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 298

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 9/145 (6%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNH 61
           +S S   + M    +  N    K  ++M TG    + SD  +        +L   +E   
Sbjct: 3   VSDSQFSQMMLRSLQVNNAGLAKAMQQMSTGERLTKLSDDPMA----SIQLLNLGRESAA 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           +A+   + + V   LS  + HL S+   +Q++   ++    G   +         +    
Sbjct: 59  LAQYKSNIANVKTALSNQEVHLDSVNDSLQNLNDKVLWGANGTLTDGDRAAIIIEIESLR 118

Query: 122 ESFVTFANMTD-EGQYLFSGINSSE 145
           +S V+  N  D  G+YLFSG  +  
Sbjct: 119 DSVVSSLNAQDEGGRYLFSGTKTDS 143


>gi|242278418|ref|YP_002990547.1| flagellar hook-associated protein 3 [Desulfovibrio salexigens DSM
           2638]
 gi|242121312|gb|ACS79008.1| flagellar hook-associated protein 3 [Desulfovibrio salexigens DSM
           2638]
          Length = 402

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/406 (12%), Positives = 117/406 (28%), Gaps = 60/406 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS I+++          D + +  ++ T +  +      A + +++        + + 
Sbjct: 3   VSTSQIYDQSITNVSRSLADYMNVSNQVATQKKINAPSDDPAGMGNVVNLRSYDQTLEDY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY---E 122
            ++       +S   +    + +  + M+       +G T          M  +     +
Sbjct: 63  YNN---TQYAMSLLGSADGLLSEASEIMISVKEQAEQGATGTYTAEQQQAMAVNMMGYQD 119

Query: 123 SFVTFANMTDEGQYLFSGINSSEKP---LNGYFTKDSLAKKSFDQMLQ------------ 167
           S +  AN      YLFSG ++   P   + G         KS                  
Sbjct: 120 SLLAIANSEIGDDYLFSGESTDTAPYEYVPGVTVTGDSPAKSDFAAFTGELDDPVIVEFT 179

Query: 168 --GFLEENSKSLLAGQHLEVSSMNAQQMTDFI--------KQLEDKFSDDEYWANNWS-- 215
             G +  +S           + +        I          +  + +         S  
Sbjct: 180 SDGTIGADSVDYRYSLDGGSTWLTGTMDGTAIPPDTTMELGDVSVEMNAGTAVTAYDSDG 239

Query: 216 --------------NASDHNIKYRIKDTEGIDVSANVNM----------RGIRDIMFVAV 251
                         N SD  +   I ++  +DV++  +               +      
Sbjct: 240 KTGGQFVVRNSLQYNGSDEAMAVGISESTELDVNSVGSDIFGGVNPDTGEPFSEPNMFEA 299

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
           I        + D          + T+  G + ++ + + +G  E+  +     L      
Sbjct: 300 ISDSIAYMWIGDEEATA---TTIETIDNGYNRMLIETSNVGAREEKADFTGQSLSLTRER 356

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + + IS     +      +LS            T+++  +SI+NYL
Sbjct: 357 VASAISDEEDADSTALTIELSRSEYIYNAVLSSTSEVISMSIMNYL 402


>gi|94969958|ref|YP_592006.1| flagellin-like [Candidatus Koribacter versatilis Ellin345]
 gi|94552008|gb|ABF41932.1| flagellin-like protein [Candidatus Koribacter versatilis Ellin345]
          Length = 295

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/340 (11%), Positives = 93/340 (27%), Gaps = 59/340 (17%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
               L +       E+ TG          + +T ++     ++     + +   ++  L 
Sbjct: 14  TLNRLTEGENNAIREVSTGNRLSAPSDDPSAMTLLIRNRASQSDCDRYVQNIGSISASLQ 73

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
            + + LS++   +   +   +    G   N      A  +    +  +  AN T  G Y 
Sbjct: 74  NADSALSNVTTSLNRAITLGLEGTGGTLSNANRSAIADEVSQIRDQVLALANTTFNGSYA 133

Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
           F G ++   P     T  S  +   D  ++     +   + A +  +   +N        
Sbjct: 134 FGGASTKTTPFVLDSTSVSGVRYQGDSTVEQVPIGDGSMVAANKPGDALFLNPA------ 187

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
             +                     +   ++   GID +                      
Sbjct: 188 GSVFGAL---------------QGMISALRSGSGIDTATTTLRSAFDQF----------- 221

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
                                        +R   G +   +  +  F  +    + T  +
Sbjct: 222 ---------------------------SSERVSYGSTISRLQADSNFQSSSKVQLQTEEN 254

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              GV+   A ++L+        +     ++ + S+L+YL
Sbjct: 255 SLTGVDMAQAISELTQAETARNAALSAAARIGQNSLLDYL 294


>gi|330953733|gb|EGH53993.1| flagellar hook-associated protein FlgL [Pseudomonas syringae Cit 7]
          Length = 530

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  FE  N   +    +  K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFFESTNTNYQRNYSNLNKTSEEVSSGIKLNTAGDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +     T++  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ETNIGTINTNAVTTETTLTSIIDTMQAAREQIVSAGSGAFTDSDRLAKASALKQYQSQIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+FSG  +S  P
Sbjct: 123 GLMNSQDPNGQYIFSGSKASTPP 145


>gi|313672182|ref|YP_004050293.1| hypothetical protein Calni_0217 [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312938938|gb|ADR18130.1| hypothetical protein Calni_0217 [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 1141

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 1/148 (0%)

Query: 50  TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGP-LVILLEGKTDNN 108
            S +  ++  +   +   +       LS     L     I+++      V       +  
Sbjct: 47  ASAINVQRTIDEGQQFSRNAENAISWLSNYDNELQRAFDIIRNAKSEYAVAGANDSQNAT 106

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQG 168
                AG + +  +S +   N    G+Y F+G  +  KP        S  K + +     
Sbjct: 107 SRKALAGDVANMLQSLIDVGNANYFGRYFFAGYKTDTKPFAADSRSISAVKINGNVNGAD 166

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDF 196
            ++ +  + L        S+  + M D+
Sbjct: 167 LIKRDVFADLPELKEGSYSIEVKSMGDY 194


>gi|295707172|ref|YP_003600247.1| flagellar hook-associated protein FlgL [Bacillus megaterium DSM
           319]
 gi|294804831|gb|ADF41897.1| flagellar hook-associated protein FlgL [Bacillus megaterium DSM
           319]
          Length = 293

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 68/187 (36%), Gaps = 4/187 (2%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
                      L  ++ TG+  +         T  + +    + + +   + +       
Sbjct: 15  QISNSYNKLETLQNQLSTGKKINRPSDDPVVATKGMAYRSNLSEVNQYKRNLTEAQSWFD 74

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
           +S++ L  +  I+Q     +V  L G  +++     A  +      ++   N    G Y+
Sbjct: 75  SSESGLEQVNSILQRTKELVVQGLNGTNESDDRQAIAREIEQLKLDYMQVGNTQVAGNYI 134

Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
           F+G+N    P+    ++++      +  L  F  E SK +    ++   ++  Q   D +
Sbjct: 135 FNGVNVGAPPI----SENASGIIESNINLDPFSVEVSKGIQLRVNIHPENIFGQGAFDLM 190

Query: 198 KQLEDKF 204
           K ++  F
Sbjct: 191 KNVQTAF 197


>gi|291562057|emb|CBL40873.1| Flagellin and related hook-associated proteins [butyrate-producing
           bacterium SS3/4]
          Length = 373

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/370 (10%), Positives = 114/370 (30%), Gaps = 24/370 (6%)

Query: 9   SSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHS 68
           SS++ R      +L  +  K   ++ TG + +             + +        +   
Sbjct: 6   SSVYRRYTSSLNDLQSNLNKSMNKVSTGAAYETAADNPLAYYQGKKMDHLYQDAKSKSSI 65

Query: 69  NSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA--GMLRDSYESFVT 126
              +  RL   +     +QK + +    +  LL+   +++K  +      L    +S V+
Sbjct: 66  LGDIKNRLYQQEQGARDIQKTLSNSKTSMQYLLDSSHNSSKTSVQTKRDALLQDVQSMVS 125

Query: 127 FANMTDEGQYLFSGINSSEKPLN--------GYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
             N   +  Y++ G + +  P +         Y  K S        M   +   N+    
Sbjct: 126 NLNSQYQDFYVYGGNDITTAPFSLSGDGKTLTYTHKYSDGTTKTVNMTMAYDTNNNTYSY 185

Query: 179 AGQHLEVSSM-NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237
                +++++  A +    +       S+ +   + ++   +         ++ ++  ++
Sbjct: 186 HLSDDDLNNLVTAMREQGRVDIGYGDISNRQSLLDTYTGGLNMLTGL---TSDSLNAMSD 242

Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGAR---NVLTKKMLSTVQQGLSG-------IIEQ 287
            N +                   +             +   T+   L         I   
Sbjct: 243 ANAKDAVKAALETTPVALLSRSVMACDNYINDTTTVDQFTDTMGSVLKDAANTEHTISTI 302

Query: 288 RAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTK 347
            + LG     +   +  L   ++ +       +G + + A  ++ +       +  + + 
Sbjct: 303 YSDLGNKYSLVETTKTRLDTLSDNLTEEYKDILGADPYEAITEMFSYQYSYSAALKMGSN 362

Query: 348 LQKLSILNYL 357
           L + S+ +++
Sbjct: 363 LMQSSLFDFI 372


>gi|291456952|ref|ZP_06596342.1| YhgE/Pip protein [Bifidobacterium breve DSM 20213]
 gi|291381363|gb|EFE88881.1| YhgE/Pip protein [Bifidobacterium breve DSM 20213]
          Length = 915

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/335 (11%), Positives = 95/335 (28%), Gaps = 33/335 (9%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
           +T ++T  +   +     +   D  +          +D    LG+ +++I   +     +
Sbjct: 164 STFVTT--VSNTVAAAISQAGDDLDQATNSTQNNVVAD----LGSVLSTIATVQDALTDL 217

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA-----GML 117
              L  +        ++ A L       Q        LL    D +K    +        
Sbjct: 218 RTTLDQSDTALADARSTTASLQRSITAAQQASQQSGALLAETQDGSKVFAASLVSALDTS 277

Query: 118 RDSYESFV-------TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFL 170
                             N +       + +++    LN    K + +  +    L    
Sbjct: 278 SAQLSGLTVNVNNAAGTINQSFNTAQ--NSVDTITNALNSPLDKTATSLDTLKDALNK-- 333

Query: 171 EENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
                   AG   + +    +++ D I  ++D  S  +   N +   +   I      T 
Sbjct: 334 --------AGISADTTDPTGKRIWDHINAIDDAISTQQAKINTFHEDTTRFIDSGKSATT 385

Query: 231 GIDVSANVNMRG---IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQ 287
            +  + +    G     +    ++ GT   S   +  +   L   +  T+      + + 
Sbjct: 386 NLSGAMSGTATGGIAALNTARSSLTGTVMPSLTSSLNSFAALNGTLNGTLTSLSGTLDQT 445

Query: 288 RAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322
             +       I + R  + +  + ++  I     V
Sbjct: 446 NGLFDQLSSTIAQTRTTIGSAQDSLNQIIDDVSTV 480


>gi|152997575|ref|YP_001342410.1| flagellar hook-associated protein 3 [Marinomonas sp. MWYL1]
 gi|150838499|gb|ABR72475.1| flagellar hook-associated protein 3 [Marinomonas sp. MWYL1]
          Length = 436

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 1/102 (0%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
             + IL +E   N +     S  + T  L   +  L S+   + D    L+         
Sbjct: 45  GASQILMYEGNSNRLKIFDESIKMATSHLEYQEVALDSLNDSMDDAHSLLIQAQNDANTQ 104

Query: 108 NKFPINAGMLRDSYESFVTFANM-TDEGQYLFSGINSSEKPL 148
                    +    ES     N  + +G Y+F+G ++   P 
Sbjct: 105 ADIDAIVQEVALITESMAELMNSKSADGNYIFAGTDTQGPPF 146


>gi|167567757|ref|ZP_02360673.1| flagellar hook-associated protein FlgL [Burkholderia oklahomensis
           EO147]
 gi|167574708|ref|ZP_02367582.1| flagellar hook-associated protein FlgL [Burkholderia oklahomensis
           C6786]
          Length = 303

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
           +T RL  +++ ++ +   + D+   L+   +G       P  A  L     S V  AN  
Sbjct: 69  LTSRLQLAESRMTGLGTGLGDVRDLLLWASDGSKPPQDLPAIAQTLETLRRSLVATANAK 128

Query: 132 DE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNA 190
           D  G YLFSG     +P+    TK   ++ ++        ++  + ++     EV++ N 
Sbjct: 129 DGEGNYLFSGTAIKTQPIQYDETKPVGSRYTY-----AGNDKQQEVIVGDGMTEVANDNM 183

Query: 191 QQMTDFIKQLE 201
           ++M D + +LE
Sbjct: 184 KEMADLLNKLE 194


>gi|15964424|ref|NP_384777.1| flagellin D protein [Sinorhizobium meliloti 1021]
 gi|307311566|ref|ZP_07591207.1| flagellin domain protein [Sinorhizobium meliloti BL225C]
 gi|17366268|sp|P58330|FLAD1_RHIME RecName: Full=Flagellin D
 gi|15073601|emb|CAC45243.1| Flagellin D [Sinorhizobium meliloti 1021]
 gi|306899583|gb|EFN30212.1| flagellin domain protein [Sinorhizobium meliloti BL225C]
          Length = 401

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 53/399 (13%), Positives = 122/399 (30%), Gaps = 58/399 (14%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T+          + ++ +  +    + +G          A  +       +   ++
Sbjct: 2   TSILTNVAAMAALQTLRGIDSNMEETQARVSSGLRVGTASDNAAYWSIATTMRSDNMALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+ A + +  ++V+++   LV   E   D  K       L+    S
Sbjct: 62  AVQDALGLGAAKVDTAYAGMENAVEVVKEIRAKLVAATEDGVDKAKIQEEIEQLKQQLTS 121

Query: 124 FVTFANMTDEGQ-YLFSGINSSE-KPLNGYFTKDSL------------------------ 157
             T A  +  G+ +L + I +   K + G F +DS                         
Sbjct: 122 IATAA--SFSGENWLQADITTPVTKSVVGSFVRDSSGVVSVKTIDYVLDGNSVLFDTVGD 179

Query: 158 ---------------------AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDF 196
                                   + +  +  +  +   +  A    + +++    +   
Sbjct: 180 AGILDKIYNVSQASVTLPVNVNGTTTEYTVAAYAVDELIAAGATFDGDSANVTGYTVPAG 239

Query: 197 IKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF 256
                  F   E     W  A D     +    +       V+           V     
Sbjct: 240 GIDYNGNFVKVEG---TWVRAIDVAATGQEVVYDDGTTKWGVDTTVAGAPAINVVAPASI 296

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
            + ++T+ A+      ++  V + L  +I   + LG     I  +  F+    + ID+ I
Sbjct: 297 ENIDITNAAQAANLDALIRGVDEALEDLISATSALGSISMRIGMQEEFVSKLTDSIDSGI 356

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
            + +  + +    +L  L  + +++      +Q LSI N
Sbjct: 357 GRLVDADMNEESTRLKALQTQQQLA------IQSLSIAN 389


>gi|163802596|ref|ZP_02196488.1| flagellar hook-associated protein L [Vibrio sp. AND4]
 gi|159173679|gb|EDP58498.1| flagellar hook-associated protein L [Vibrio sp. AND4]
          Length = 396

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 60/402 (14%), Positives = 132/402 (32%), Gaps = 52/402 (12%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQ 57
             T IS+   ++ +    +          E++ +G+     SD  L        I    Q
Sbjct: 1   MLTRISSFHNYQSVQNDLRRQENKIHHNQEQLASGKQLIKPSDDPLA----THYIQSIGQ 56

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
           ++  I + L +  LV  RL   +  +S+ ++ + +     + ++ G             L
Sbjct: 57  QEEQIKQYLDAIVLVRNRLENQEVVVSNAEQFIDESKRISMEMINGAFSPEDRAAKKREL 116

Query: 118 RDSYESFVTFANMTD-EGQYLFSGINSSEKP-LNGYFTKDSLAKKSFDQMLQGFLEENSK 175
            +   +F+  AN  D  G Y+F+G     +P    Y    S+     D   +  +  N +
Sbjct: 117 EEIANNFMALANTQDESGNYVFAGTKPKTQPFFRDY--DGSVVYTGDDYQRKMKVASNIE 174

Query: 176 SLLAGQHLEVSSMNAQQMTDF-------------IKQLEDKFSDDEYWANNWSNASDHNI 222
             +     +V S       DF             + Q      DD  +   + + S+   
Sbjct: 175 LGINYPGNKVFSEIPNPFGDFQPQYDLQEGSELLLSQATSASQDDSNYTVTFVDMSNGKF 234

Query: 223 KYRIK-DTEGIDVSANVNMRGIRD--------------------------IMFVAVIGTE 255
            Y+++ D   + V     + GI+                           I        +
Sbjct: 235 GYQLEKDGSVVQVDDYSPIDGIKYEGVNIQLKGQVSAGDSITLEPRQTFSIFDAFKETMQ 294

Query: 256 FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
           +   +++D +      +M    Q     + + R  +G +   ++ +    ++ N  +   
Sbjct: 295 WSESSVSDASATAQLHQMTEEFQAAFVHMNKVRTDVGANLSTLDIQEQNHEDFNLSLAKA 354

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            S    ++   A  + S     ++ S     K + L++ NY+
Sbjct: 355 KSNFEDLDYSKAVIEFSENSRALQASQQAFGKTKDLTLFNYI 396


>gi|126452666|ref|YP_001064572.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           1106a]
 gi|167843918|ref|ZP_02469426.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           B7210]
 gi|242316039|ref|ZP_04815055.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           1106b]
 gi|126226308|gb|ABN89848.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           1106a]
 gi|242139278|gb|EES25680.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           1106b]
          Length = 410

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/406 (12%), Positives = 123/406 (30%), Gaps = 54/406 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++ ++     +  +      +L++++ +G S              ++       +A+ 
Sbjct: 3   ISSTQLYSLNVDMMNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++V   L T    L+S+  ++      L+   +G   ++     A  ++ S +  +
Sbjct: 63  TQNQTIVQTALQTEDTTLTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLN-----------GYFT-----KDSLAKKSFDQMLQG 168
           T AN  D  G YLF+G   + +P +            Y        D+      D     
Sbjct: 123 TLANTADGAGNYLFAGFQPTTQPFSNKPGGGVTYAGDYGARAVQIADTRTVSQGDNGANV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDF-IKQLEDKFSDDEYWANNWSNA-------SDH 220
           F+       L       S+     +    I    D  +  ++       A       +D+
Sbjct: 183 FMSVPFLGSLPVPAAGASNTGTGTIGAVSITNPSDPTNTHQFTITFGGTAAAPTYTVTDN 242

Query: 221 NIK----------------------------YRIKDTEGIDVSANVNMRGIRDI-MFVAV 251
           ++                               + DT  +  +          +   +A 
Sbjct: 243 SVTPPPTTAAQAYSSGQGINLGGQTVAVSGKPAVGDTFTVTPAPQAGTDVFATLDTVIAA 302

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
           + +   +      A         + +   ++ ++  +A +G   + +   +         
Sbjct: 303 LKSPVGNSQTASTALTNTMATASTKLMNTMTNVLTVQASVGGRLQEVKAMQAVTTTNTLQ 362

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +S         A +Q   L N +  +     ++Q LS+  YL
Sbjct: 363 TTNSLSNLTDTNLPAAISQFLQLQNSLSAAQKAFVQMQNLSLFQYL 408


>gi|167561215|ref|ZP_02354131.1| flagellar hook-associated protein FlgL [Burkholderia oklahomensis
           EO147]
 gi|167568433|ref|ZP_02361307.1| flagellar hook-associated protein FlgL [Burkholderia oklahomensis
           C6786]
          Length = 410

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 70/178 (39%), Gaps = 3/178 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS+S ++     +  +      +L++++ +G S              ++       +A+ 
Sbjct: 3   ISSSQLYSLNVNMMNDQQAQIAQLYQQVSSGVSLTTPADNPLAAAQAVQLSATSATLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S+V   L T    L+S+  ++      L+   +G   ++     A  ++ S +  +
Sbjct: 63  TSNQSVVQTALQTESTTLTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           T AN  D  G YLFSG   + +P +           + D   +     +++++  G +
Sbjct: 123 TLANTADGAGNYLFSGFQPTTQPFSNK--PGGGVTYAGDYGARTVQIADTRTISQGDN 178


>gi|254182132|ref|ZP_04888729.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           1655]
 gi|184212670|gb|EDU09713.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           1655]
          Length = 410

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/406 (12%), Positives = 117/406 (28%), Gaps = 54/406 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++ ++     +  +      +L++++ +G S              ++       +A+ 
Sbjct: 3   ISSTQLYSLNVDMMNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++V   L T    L+S+  ++      L+   +G   ++     A  ++ S +  +
Sbjct: 63  TQNQTIVQTALQTEDTTLTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLN-----------GYFT-----KDSLAKKSFDQMLQG 168
           T AN  D  G YLF+G   + +P +            Y        D+      D     
Sbjct: 123 TLANTADGAGNYLFAGFQPTTQPFSNKPGGGVTYAGDYGARAVQIADTRTVSQGDNGANV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDF-IKQLEDKFSDDEYWANNWSNA-------SDH 220
           F+       L       S+     +    I    D  +  ++       A       +D+
Sbjct: 183 FMSVPFLGSLPVPAAGASNTGTGTIGAVSITNPSDPTNTHQFTITFGGTAAVPTYTVTDN 242

Query: 221 NIKYRIKDTEGIDVS-------------------------ANVNMRGIRDIMFVAVIGTE 255
           ++            S                               G      +  +   
Sbjct: 243 SVTPPTTTAAQAYSSGQGINLGGQTVAVSGKPAVGDTFTVTPAPQAGTDVFATLDTVIAA 302

Query: 256 F----LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
                 +      A         + +   ++ ++  +A +G   + +   +         
Sbjct: 303 LKSPVGNSQTASTALTNTMATASTKLMNTMTNVLTVQASVGGRLQEVKAMQAVTTTNTLQ 362

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +S         A +Q   L N +  +     ++Q LS+  YL
Sbjct: 363 TTNSLSNLTDTNLPAAISQFLQLQNSLSAAQKAFVQMQNLSLFQYL 408


>gi|126175139|ref|YP_001051288.1| flagellar hook-associated protein FlgL [Shewanella baltica OS155]
 gi|304409971|ref|ZP_07391590.1| flagellar hook-associated protein 3 [Shewanella baltica OS183]
 gi|307302316|ref|ZP_07582074.1| flagellar hook-associated protein 3 [Shewanella baltica BA175]
 gi|125998344|gb|ABN62419.1| flagellar hook-associated protein 3 [Shewanella baltica OS155]
 gi|304351380|gb|EFM15779.1| flagellar hook-associated protein 3 [Shewanella baltica OS183]
 gi|306914354|gb|EFN44775.1| flagellar hook-associated protein 3 [Shewanella baltica BA175]
          Length = 403

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 55/403 (13%), Positives = 139/403 (34%), Gaps = 53/403 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S++ +F +      +    + K+ +++ +G+  +           I    Q+   + + 
Sbjct: 3   LSSAQLFNQSITSVLQKQTATSKILDQLSSGKKVNTAGDDPVASQGIDNLNQKNALVDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +    T RL+ +++ L S + +   M   ++  + G     +  + A  ++ S E  +
Sbjct: 63  MKNIDYATNRLAVAESKLGSAEDLTGLMRDQVMRAINGTLSGTERQMIADEMKGSLEELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ-----------MLQGFLEEN 173
           + AN  D  G Y+FSG ++ ++P     +       S D             +   +  +
Sbjct: 123 SIANSKDESGNYMFSGFSTDKEPFAFDNSTPPKIVYSGDSGVRNSLVQTGVAMGTNIPGD 182

Query: 174 SKSLLAGQHLEVSSMN--AQQMTDF------IKQLEDKFSDDE--YWANNWSNAS----- 218
           S  + A   L   S+N  A Q  +F      I       +D     + +N +  +     
Sbjct: 183 SAFMKAPNGLGDYSVNYLASQQGEFSVKTAKIADAATYVADTYTFNFTDNGAGGTNLQVL 242

Query: 219 ------------------------DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGT 254
                                   D  I  +    +   +     +     I     +  
Sbjct: 243 DSANNPVANVANFDATNPVSFNGIDVKIDGKPSAGDSFTMEPQAEVSIFDTISSAIALIE 302

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
           +  S N + G       ++L+ +  G++ I   R+V G + K +         +  +  +
Sbjct: 303 DPNSANTSQG--RAQLAQILNNIDSGVNQISSARSVAGNNLKVVESYTETHTEEKVVNTS 360

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +S    ++  +A  +       +     + +K+  +S+ +++
Sbjct: 361 ALSLLEDLDYASAITEFEKQQLALNAVSNVFSKVGSVSLFDFI 403


>gi|239907785|ref|YP_002954526.1| flagellar hook-associated protein 3 [Desulfovibrio magneticus RS-1]
 gi|239797651|dbj|BAH76640.1| flagellar hook-associated protein 3 [Desulfovibrio magneticus RS-1]
          Length = 509

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 57/177 (32%), Gaps = 6/177 (3%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
               +L+   + + + +   + +     L+ S + L+S+  ++  + G       G    
Sbjct: 47  GAALVLQTRCDISQLTQYKRNITSAEGWLTQSDSALTSVSTLITSIKGYAEQGATGSVTE 106

Query: 108 NKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ 167
                 A  +R  ++  ++ AN    GQ LF+G     +  +     +S      D+   
Sbjct: 107 ENRGEIASAVRQYFQQLISLANTEYSGQSLFAGQKVDTEAFSEALWMNSN-----DETFN 161

Query: 168 GFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY 224
             +   S           S++  Q M       +  FS        W+  S +    
Sbjct: 162 AAVAA-SNGGFTLTGSSNSTLLVQFMGTDTAGHQPAFSYSADGGTTWTTGSYNTATT 217


>gi|163758023|ref|ZP_02165111.1| flagellin protein [Hoeflea phototrophica DFL-43]
 gi|162284312|gb|EDQ34595.1| flagellin protein [Hoeflea phototrophica DFL-43]
          Length = 324

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 115/352 (32%), Gaps = 40/352 (11%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T+S         + +N D       + +G   D      A  +       +   ++
Sbjct: 2   TSIMTNSAAMAALQTLRSINSDMEMTQNRISSGYRVDTAADNSAYWSIATTMRSDNQAMS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++  +   + S  ++V ++   LV   E   D  K       L++   S
Sbjct: 62  TVKDALGLGAAKVDVAYTGMESSIEVVSEIKAKLVAAREPGVDKTKIDKELTELKNQLVS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N         +  ++    +  + + G    +   L++   L
Sbjct: 122 ISESAS--------FSGEN---------WLNNTTTAAAGTKSVVGGFNRDVNGLVSITTL 164

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           +V++     +    + L     D +       NA D +             +       +
Sbjct: 165 DVNTSTTTLIGAASENLGILTKDIDA------NALDPDAT-----------TTTARNYFL 207

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            D            +  LT    +     M+  V    + + +  + LG   K I+ ++ 
Sbjct: 208 IDTGATTGTAASGTAIALTAATTDAQVDDMIRAVDSMFTQMTDAASNLGAVNKRISMQQD 267

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+ N  + ID+ I + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 268 FVSNLMDSIDSGIGRLVDADMNEESTRLKALQTQQQLG------IQSLSIAN 313


>gi|332982895|ref|YP_004464336.1| flagellar hook-associated protein 3 [Mahella australiensis 50-1
           BON]
 gi|332700573|gb|AEE97514.1| flagellar hook-associated protein 3 [Mahella australiensis 50-1
           BON]
          Length = 289

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 3/153 (1%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  ++  I   +  ++  L     K   ++ TG+            +  L    +  
Sbjct: 1   MRIT--NSMMISNMLRDMSANL-NRLDKYQSQLATGRKIRVPSDDPVGASRSLRARTDLA 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
              +   +   V   L  +++ L+ +  ++Q      V    G   +      A  L   
Sbjct: 58  RNHQYAKNVDDVISWLDMTESSLAELNSVLQRAREITVQGANGTLADEDRQKVAQELEQL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
            +  +   N     +Y+F+G  ++ +P     T
Sbjct: 118 KQHVLQVGNNKYADRYIFAGTKTTAEPFASDGT 150



 Score = 40.1 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 64/162 (39%), Gaps = 14/162 (8%)

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF- 256
           K   + F+ D  ++ N     D  I+Y I     I V+   N   I  I  +     +  
Sbjct: 139 KTTAEPFASDGTYSGN-----DGAIEYGIGPANNIKVNITGNDVDITGIYNLLNTVQQGL 193

Query: 257 -LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
               ++   A+       L  +++ L  ++EQRA +G         +  L + +   +  
Sbjct: 194 EGDDSVNLSAQ-------LGELEKKLDNVLEQRAAVGARANRAELVKNRLADDDITFNQL 246

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++    V+  +   ++S   +  E S +  +++ + S+ ++L
Sbjct: 247 LANVEDVDIASVSIKISEARSVYEASLLSASRIIQPSLADFL 288


>gi|262283895|gb|ACY40757.1| FlaD [Rhizobium leguminosarum bv. viciae]
          Length = 320

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/334 (10%), Positives = 101/334 (30%), Gaps = 38/334 (11%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           TS+       + + +NK++ +  +++ +G   +      +  +       +  ++     
Sbjct: 6   TSAAAVNALAVLRSINKEASQTQQQVSSGYRIETAADDASYWSVATVMRSDSTNLGTVGD 65

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           +  L   ++  +   ++S   ++ ++   LV   E  TD +K        ++  ++ V  
Sbjct: 66  ALGLGAAKVDATYTAMNSAIDLIGEIRAKLVSAREPGTDKDKINAEISEYKEQLQTIVES 125

Query: 128 ANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSS 187
              +  G+               +      A      ++ GF+   +    A      SS
Sbjct: 126 --TSFAGE--------------NWLLNGDTAAPPTWSIISGFVRAPTGEYQAQTIDFPSS 169

Query: 188 MNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM 247
                             D          AS   +   +      +       R    + 
Sbjct: 170 QT-------------ILIDKNN-------ASGGLLTKSVDANAINNSG--ATSRNYYLLN 207

Query: 248 FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN 307
             +          + +   +     ML      LS +    A +G+ +  I+++  +  +
Sbjct: 208 ANSTTPATGTEIAIDNNTTDAQLTDMLDVTDALLSSLTTTAASIGVLKTRIDDQIDYTAD 267

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
             + ID  +   +  +   A  +   +  + +M+
Sbjct: 268 LADSIDKSVGALVDTDMDEASIRQKAIETQKQMA 301


>gi|237810469|ref|YP_002894920.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           MSHR346]
 gi|237503583|gb|ACQ95901.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           MSHR346]
          Length = 410

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/406 (12%), Positives = 118/406 (29%), Gaps = 54/406 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++ ++     +  +      +L++++ +G S              ++       +A+ 
Sbjct: 3   ISSTQLYSLNVDMMNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++V   L T    L+S+  ++      L+   +G   ++     A  ++ S +  +
Sbjct: 63  TQNQTIVQTALQTEDTTLTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLN-----------GYFT-----KDSLAKKSFDQMLQG 168
           T AN  D  G YLF+G   + +P +            Y        D+      D     
Sbjct: 123 TLANTADGAGNYLFAGFQPTTQPFSNKPGGGVTYAGDYGARAVQIADTRTVSQGDNGANV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDF-IKQLEDKFSDDEYWANNWSNA-------SDH 220
           F+       L       S+     +    I    D  +  ++       A       +D+
Sbjct: 183 FMSVPFLGSLPVPAAGASNTGTGTIGAVSITNPSDPTNTHQFTITFGGTAAAPTYTVTDN 242

Query: 221 NIKYRIKDTEGIDVS-------------------------ANVNMRGIRDIMFVAVIGTE 255
           ++            S                               G      +  + + 
Sbjct: 243 SVTPPTTTAAQAYSSGQGINLGGQTVAVSGKPAVGDTFTVTPAPQAGTDVFATLDTVISA 302

Query: 256 F----LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
                 +      A         + +   ++ ++  +A +G   + +   +         
Sbjct: 303 LKSPVGNSQTASTALTNTMATASTKLMNTMTNVLTVQASVGGRLQEVKAMQAVTTTNTLQ 362

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +S         A +Q   L N +  +     ++Q LS+  YL
Sbjct: 363 TTNSLSNLTDTNLPAAISQFLQLQNSLSAAQKAFVQMQNLSLFQYL 408


>gi|315127346|ref|YP_004069349.1| flagellar hook-associated protein FlgL [Pseudoalteromonas sp.
           SM9913]
 gi|315015860|gb|ADT69198.1| flagellar hook-associated protein FlgL [Pseudoalteromonas sp.
           SM9913]
          Length = 419

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 1/138 (0%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
             E  ++     E + TGQ      +  A ++  + +  +     +   + + +  RL T
Sbjct: 16  ILENQQNVAGAQERVTTGQKYLSTSENPAAISQGMLYTNKIETNEQLTKNINQLKGRLET 75

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQYL 137
            ++ L  M   + +     +    G  D       A  L++  +S +   N  ++ G+YL
Sbjct: 76  EESLLQGMNDTILEAQMLTIRAGNGSLDKGDLASVASELKELQKSLLNLMNSQSEGGKYL 135

Query: 138 FSGINSSEKPLNGYFTKD 155
           FSG     +      T  
Sbjct: 136 FSGYQDDIQTYTFNSTNG 153



 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLG---ISEKNINEERVFLQNK 308
           +      + L +   N      L  ++     I+  +A LG      + + +    L   
Sbjct: 314 LIISLNDEQLDEAQINQALSDGLIQLKNASEQIVFTQAGLGGRMNVVERVTDSNSALDIN 373

Query: 309 NNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           N       S  I ++   A + L+   + ++ S     +L KLS+ +YL
Sbjct: 374 N---QENRSSLIEIDAAEAISDLTKHESGLQASQATFGRLAKLSLFDYL 419


>gi|15964423|ref|NP_384776.1| flagellin B protein [Sinorhizobium meliloti 1021]
 gi|307311565|ref|ZP_07591206.1| flagellin domain protein [Sinorhizobium meliloti BL225C]
 gi|17366440|sp|Q03842|FLAB1_RHIME RecName: Full=Flagellin B
 gi|152225|gb|AAA26280.1| flagellin B [Sinorhizobium meliloti]
 gi|15073600|emb|CAC45242.1| Flagellin B [Sinorhizobium meliloti 1021]
 gi|306899582|gb|EFN30211.1| flagellin domain protein [Sinorhizobium meliloti BL225C]
          Length = 394

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 53/392 (13%), Positives = 116/392 (29%), Gaps = 50/392 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T+          + +  +  +    + +G          A  +       +   ++
Sbjct: 2   TSILTNIAAMAALQTLRTIGSNMEETQAHVSSGLRVGQAADNAAYWSIATTMRSDNMALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+ + + S  ++V+++   LV   E   D  K       L+D   S
Sbjct: 62  AVQDALGLGAAKVDTAYSGMESAIEVVKEIKAKLVAATEDGVDKAKIQEEIDQLKDQLTS 121

Query: 124 FVTFANMTDEGQY-----LFSG----------------------------INS------S 144
               A  +  G+      L  G                             NS       
Sbjct: 122 IAEAA--SFSGENWLQADLSGGPVTKSVVGSFVRDAGGAVSVKKVDYSLNTNSVLFDTAG 179

Query: 145 EKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKF 204
              +       S A  +    + G   E +        L  +S       D+        
Sbjct: 180 NTGILDKVYNVSQASVTLPVNVNGTTSEYTVGAYNVDDLIDASATFD--GDYANVGAGAL 237

Query: 205 SDD-EYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTD 263
           + D      +W  A D     +    +       V+                  + ++T 
Sbjct: 238 AGDYVKVQGSWVKAVDVAATGQEVVYDDGTTKWGVDTTVTGAPATNVAAPASIATIDITI 297

Query: 264 GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
            A+      +++ V + L+ +    A LG     I+ +  F+   ++ ID+ + + +  +
Sbjct: 298 AAQAGNLDALIAGVDEALTDMTSAAADLGSIAMRIDLQSDFVNKLSDSIDSGVGRLVDAD 357

Query: 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
            +    +L  L  + +++      +Q LSI N
Sbjct: 358 MNEESTRLKALQTQQQLA------IQSLSIAN 383


>gi|305432071|ref|ZP_07401238.1| flagellin family protein [Campylobacter coli JV20]
 gi|304445155|gb|EFM37801.1| flagellin family protein [Campylobacter coli JV20]
          Length = 754

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 44/133 (33%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
            +        ++ +++ +G       +  +        E E   + +   + +   +   
Sbjct: 15  TSMGAQSSLYQISQQLSSGIKIQNSYEDASVYIDNTRLEYELKTLEQVKQATNSAKEMTQ 74

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
            S   L  M K++ D    +                A  L    ES V  AN +  GQYL
Sbjct: 75  NSMKALQDMVKLLGDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQLANTSVNGQYL 134

Query: 138 FSGINSSEKPLNG 150
           F+G   + KP + 
Sbjct: 135 FAGSQVANKPFDS 147



 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%)

Query: 189 NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI-- 246
           +   +   +   +        +    +  +  N  +   ++  ID     N+  I+D+  
Sbjct: 587 SGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSLTID---EPNVDIIKDLDS 643

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
           M  AV+     + + ++  RN   +  L  +      + +    +G     I        
Sbjct: 644 MIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNTTMGAYHNTIEGVNTRTS 703

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +  + +  S  I V+   A   L       + S   +T + +LS+LNY+
Sbjct: 704 FLSVNVQSIKSNVIDVDYGEAMMNLMQTQLAYQASLKASTTISQLSLLNYM 754


>gi|94500249|ref|ZP_01306782.1| Flagellin and related hook-associated protein [Oceanobacter sp.
           RED65]
 gi|94427548|gb|EAT12525.1| Flagellin and related hook-associated protein [Oceanobacter sp.
           RED65]
          Length = 412

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IST   F           + + +  +++ +G+     +D  +      T IL+ +Q+ + 
Sbjct: 3   ISTMQQFNSGLRSILNNQESTQRTQQQISSGRRVLTPADDPIA----ATQILQLQQDISL 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   + +    RL+   + L  +   +  +    V    G          A  + +  
Sbjct: 59  RDQYEKNITSARNRLNLEDSILGGVIDNIDRIRELTVNAGNGSMTKEDRGYIASEIEERL 118

Query: 122 ESFVTFANMTDEGQ-YLFSGINSSEKPLNG 150
           ++ V   N  D    Y+F G      P   
Sbjct: 119 DALVDLMNTKDASNTYIFGGFKGETVPFQE 148


>gi|302669848|ref|YP_003829808.1| flagellar hook-associated protein FlgL [Butyrivibrio
           proteoclasticus B316]
 gi|302394321|gb|ADL33226.1| flagellar hook-associated protein FlgL [Butyrivibrio
           proteoclasticus B316]
          Length = 703

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351
           G   K ++     L N+     T  S++  ++      QL+T     E S M T K+ + 
Sbjct: 638 GTRSKRLDLINQRLMNQTTTFKTLQSENEDIDLAETATQLTTAQVTYEASLMATGKISQS 697

Query: 352 SILNYL 357
           S++N++
Sbjct: 698 SLINFI 703



 Score = 37.0 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 59/195 (30%), Gaps = 2/195 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   +                +L+  M TG+               L        +++ 
Sbjct: 3   ITNKIMQNNSLYNINNNKITEDQLNTMMSTGKKLTRPSDDPVIAIRALRLRSNVTQLSQY 62

Query: 66  LHSNSL-VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
              N+      L+ +   LS++  ++ D V             +        +    + +
Sbjct: 63  YEKNAKDAESWLNVTADALSTITAVLTDSVKQATKGSRMDLTLDDLDTIITQMDALAKEY 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
            +  N+   G+Y+F+G  +    L    T  +      D+     + ++ + L   +   
Sbjct: 123 YSTGNVDYAGRYVFTGYRTDTA-LTFDKTTTADYTDINDEFNASIISDSKRILGKYKLDS 181

Query: 185 VSSMNAQQMTDFIKQ 199
            + ++  +    ++ 
Sbjct: 182 ATVLDKTEADAVLEN 196


>gi|94312676|ref|YP_585885.1| flagellar hook-filament junction protein [Cupriavidus metallidurans
           CH34]
 gi|93356528|gb|ABF10616.1| flagellar hook-filament junction protein [Cupriavidus metallidurans
           CH34]
          Length = 412

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/409 (11%), Positives = 124/409 (30%), Gaps = 57/409 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++TS+++++            + + +++ TG+            T  L   Q ++   + 
Sbjct: 3   VATSTLYQQGLASMNNQQSKLLYVQQQLGTGRRILTPSDDPVAATRALGVAQAQSVNGQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L   +  L S+   +Q++   LV    G   +      A  L+  Y+  +
Sbjct: 63  ATTRKQANASLGLEENTLQSVTTTIQNIQSLLVNAGNGTMSDTDRASLATALQGQYDQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAK----------------KSFDQMLQG 168
             AN  D  G YLF+G+ ++  P        ++ +                +S +   + 
Sbjct: 123 GLANADDGNGNYLFAGLQANTVPFAKNAAGAAVYQGDNSHQLLQVDVARQMESGNTGAEV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
           F+   + +         ++  A      +    +             NA+   ++Y++ +
Sbjct: 183 FMSVTTNAGYVLNGNAGNAGTATYGPISVSDPTNPLYGTPLKLTFQPNATTGAMEYQVSN 242

Query: 229 TEGID---------------------------------VSANVNMRGIRDIMFVAVIGTE 255
                                                  +      G      +  + + 
Sbjct: 243 ATTGTAIGTAQPYSDGTPINVGGVSFTVKGTPAAGDSLTAVPAQQAGADIFANLQNVISA 302

Query: 256 F---LSKNLTDGARNV----LTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNK 308
               +       A N     +    +  +   L  ++  R+ +G   + ++      QN+
Sbjct: 303 LKKPIDTGANTDAANANLQNVLATGIRQMGNSLDNVLTVRSSVGSRMQELDALDTIGQNR 362

Query: 309 NNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    + +S    +   +A  +       ++ +     ++Q +++  YL
Sbjct: 363 DLNSKSALSDLQDLNYASAITEYYQRQTALQGAQQSFMQIQGMNLFQYL 411


>gi|53717922|ref|YP_106908.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           K96243]
 gi|53724573|ref|YP_104806.1| flagellar hook-associated protein FlgL [Burkholderia mallei ATCC
           23344]
 gi|121601423|ref|YP_994299.1| flagellar hook-associated protein FlgL [Burkholderia mallei SAVP1]
 gi|124383357|ref|YP_001028052.1| flagellar hook-associated protein FlgL [Burkholderia mallei NCTC
           10229]
 gi|126439975|ref|YP_001057330.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           668]
 gi|126449830|ref|YP_001082859.1| flagellar hook-associated protein FlgL [Burkholderia mallei NCTC
           10247]
 gi|134283595|ref|ZP_01770294.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei 305]
 gi|162210074|ref|YP_331889.2| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           1710b]
 gi|167717671|ref|ZP_02400907.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           DM98]
 gi|167736712|ref|ZP_02409486.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           14]
 gi|167813811|ref|ZP_02445491.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           91]
 gi|167822328|ref|ZP_02453799.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           9]
 gi|167892420|ref|ZP_02479822.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           7894]
 gi|167900917|ref|ZP_02488122.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           NCTC 13177]
 gi|167917172|ref|ZP_02504263.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           BCC215]
 gi|217425064|ref|ZP_03456560.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei 576]
 gi|226199736|ref|ZP_03795287.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           Pakistan 9]
 gi|254174714|ref|ZP_04881375.1| flagellar hook-associated protein 3 [Burkholderia mallei ATCC
           10399]
 gi|254188064|ref|ZP_04894576.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196573|ref|ZP_04902997.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei S13]
 gi|254201903|ref|ZP_04908267.1| flagellar hook-associated protein 3 [Burkholderia mallei FMH]
 gi|254207238|ref|ZP_04913589.1| flagellar hook-associated protein 3 [Burkholderia mallei JHU]
 gi|254295822|ref|ZP_04963279.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           406e]
 gi|254359740|ref|ZP_04976011.1| flagellar hook-associated protein 3 [Burkholderia mallei
           2002721280]
 gi|52208336|emb|CAH34269.1| putative flagellar hook-associated protein [Burkholderia
           pseudomallei K96243]
 gi|52427996|gb|AAU48589.1| flagellar hook-associated protein 3 [Burkholderia mallei ATCC
           23344]
 gi|121230233|gb|ABM52751.1| flagellar hook-associated protein 3 [Burkholderia mallei SAVP1]
 gi|124291377|gb|ABN00646.1| flagellar hook-associated protein 3 [Burkholderia mallei NCTC
           10229]
 gi|126219468|gb|ABN82974.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei 668]
 gi|126242700|gb|ABO05793.1| flagellar hook-associated protein 3 [Burkholderia mallei NCTC
           10247]
 gi|134245004|gb|EBA45099.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei 305]
 gi|147747797|gb|EDK54873.1| flagellar hook-associated protein 3 [Burkholderia mallei FMH]
 gi|147752780|gb|EDK59846.1| flagellar hook-associated protein 3 [Burkholderia mallei JHU]
 gi|148028954|gb|EDK86886.1| flagellar hook-associated protein 3 [Burkholderia mallei
           2002721280]
 gi|157805584|gb|EDO82754.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           406e]
 gi|157935744|gb|EDO91414.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160695759|gb|EDP85729.1| flagellar hook-associated protein 3 [Burkholderia mallei ATCC
           10399]
 gi|169653316|gb|EDS86009.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei S13]
 gi|217392084|gb|EEC32110.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei 576]
 gi|225928087|gb|EEH24123.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           Pakistan 9]
          Length = 410

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/406 (12%), Positives = 117/406 (28%), Gaps = 54/406 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++ ++     +  +      +L++++ +G S              ++       +A+ 
Sbjct: 3   ISSTQLYSLNVDMMNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++V   L T    L+S+  ++      L+   +G   ++     A  ++ S +  +
Sbjct: 63  TQNQTIVQTALQTEDTTLTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLN-----------GYFT-----KDSLAKKSFDQMLQG 168
           T AN  D  G YLF+G   + +P +            Y        D+      D     
Sbjct: 123 TLANTADGAGNYLFAGFQPTTQPFSNKPGGGVTYAGDYGARAVQIADTRTVSQGDNGANV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDF-IKQLEDKFSDDEYWANNWSNA-------SDH 220
           F+       L       S+     +    I    D  +  ++       A       +D+
Sbjct: 183 FMSVPFLGSLPVPAAGASNTGTGTIGAVSITNPSDPTNTHQFTITFGGTAAAPTYTVTDN 242

Query: 221 NIKYRIKDTEGIDVS-------------------------ANVNMRGIRDIMFVAVIGTE 255
           ++            S                               G      +  +   
Sbjct: 243 SVTPPTTTAAQAYSSGQGINLGGQTVAVSGKPAVGDTFTVTPAPQAGTDVFATLDTVIAA 302

Query: 256 F----LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
                 +      A         + +   ++ ++  +A +G   + +   +         
Sbjct: 303 LKSPVGNSQTASTALTNTMATASTKLMNTMTNVLTVQASVGGRLQEVKAMQAVTTTNTLQ 362

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +S         A +Q   L N +  +     ++Q LS+  YL
Sbjct: 363 TTNSLSNLTDTNLPAAISQFLQLQNSLSAAQKAFVQMQNLSLFQYL 408


>gi|258625227|ref|ZP_05720139.1| flagellar hook-associated protein 3 [Vibrio mimicus VM603]
 gi|258582474|gb|EEW07311.1| flagellar hook-associated protein 3 [Vibrio mimicus VM603]
          Length = 299

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 117/355 (32%), Gaps = 65/355 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNH 61
           IS +   + M    +  N     + ++M TG    + SD  +        +L+ ++E + 
Sbjct: 3   ISDTQFSQMMLQSLQTNNAGLGNVMQQMSTGERLTKLSDDPMA----SVKLLKLDREGSA 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I +   + ++V   LS  + HL S+ + ++ M   ++    G   +         L+   
Sbjct: 59  IKQYQDNINMVKTTLSNQEVHLDSVSESLKSMRELVLWGANGTLTDEDRDGMISKLKSLR 118

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            S  +  N  D +G YLFSG  +    LN         K     +  G  ++   ++  G
Sbjct: 119 GSIASSFNARDEDGHYLFSGTKTDTAALN---------KTDAGYVFNGNNDKRVVTVAKG 169

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
             +E S+M A+ + D                        +N+  +I              
Sbjct: 170 VTVE-SNMTAKDILDLGGG--------------------NNVLNQID------------- 195

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                     V+  EF                 L  +   L+ ++     +G    N++ 
Sbjct: 196 ----------VLIKEFEKPGKN---FKAKVDSSLKAIDDSLANVLGALTEIGGRYNNLDL 242

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                   N  +D        ++   A  +LS  +  ++ +     K+  L++ +
Sbjct: 243 MESAHSENNLFVDKVTGDLSKLDYGEASVRLSNFMAALQATQASYVKINDLNLFD 297


>gi|323341351|ref|ZP_08081595.1| flagellin family protein [Lactobacillus ruminis ATCC 25644]
 gi|323091228|gb|EFZ33856.1| flagellin family protein [Lactobacillus ruminis ATCC 25644]
          Length = 300

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 110/358 (30%), Gaps = 78/358 (21%)

Query: 13  ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV 72
             +   T ++     +L       ++SD  L +   +   +   Q  ++      +    
Sbjct: 8   NNLATTTNKVQSTMNQLASLKEVNKASDNPLLVSKILDLNVSISQNSSYAMTISDAKDWT 67

Query: 73  TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
           T +    Q    SM  I   +V    +   G   N++F      L+    + V   N   
Sbjct: 68  TTQDGALQLVEKSMNNIRNIIVSANNL---GALTNDEFKAYRSELQQEIGTVVDAMNTNY 124

Query: 133 EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQ 192
           +G+Y+F G  ++E P                      + +++   + G            
Sbjct: 125 DGRYIFGGSKTTEPPFE--------------------VTKDANGEVNGLK---------- 154

Query: 193 MTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI 252
                                  N  + N+   I +   I++  N N           V+
Sbjct: 155 ----------------------YNGDETNLAREISNGVSINLLTNGNS----------VM 182

Query: 253 GTEFLSKNLTDGARNVLTK------KMLSTVQQGL-------SGIIEQRAVLGISEKNIN 299
             +   K+L      ++          ++ + + L       + I+     +G  E  I+
Sbjct: 183 NAQGAGKDLGTFFNELVADLDKHDEAAIADLSKKLGEVDVFKNNIVNYNTRIGAIENRID 242

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +    ++   +   +S    V+    + +    +   + +  + TK+ + ++L+Y+
Sbjct: 243 AAKDRNDSEKITLKNTLSTRQDVDIAQKYMEYQNQMLAYKSTLAMGTKIMQTTVLDYM 300


>gi|107100532|ref|ZP_01364450.1| hypothetical protein PaerPA_01001557 [Pseudomonas aeruginosa PACS2]
 gi|313106042|ref|ZP_07792301.1| flagellar hook-associated protein 3 [Pseudomonas aeruginosa 39016]
 gi|13183734|gb|AAK15325.1|AF332547_2 flagellar hook-associated protein type 3 FlgL [Pseudomonas
           aeruginosa]
 gi|310878803|gb|EFQ37397.1| flagellar hook-associated protein 3 [Pseudomonas aeruginosa 39016]
          Length = 433

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST   F            D  +  E++ TG+              +L  +QE+    + 
Sbjct: 3   ISTIQAFNNSVNGISRNYADLNRTFEQISTGKRILTPADDPVGSVRLLRLDQEQGLNEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS  +  L S+  ++Q +        +G  D+N     A  LR   +  +
Sbjct: 63  KTGMTEAKNSLSQEETILRSVGNVLQRIREIAGQAGDGALDSNDKKSLASELRQREDELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
              N  D  G+YLFSG   S +P 
Sbjct: 123 NLLNSRDASGKYLFSGSQGSVQPF 146



 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 44/107 (41%), Gaps = 1/107 (0%)

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
            + +   ++   D  R+  T   L+ +    + +   +  +G     +     F+ +   
Sbjct: 327 ALESSTDNQAGNDAIRDA-TAVALTNLSAVAAAVDGGQGKIGARLNTVESTETFIDDVKL 385

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  + +S+   ++   A ++LS     ++ +     K+Q LS+ NYL
Sbjct: 386 VNASVMSQIQDLDYAEALSRLSLQSTIMDAAQQSYVKIQGLSLFNYL 432


>gi|254261806|ref|ZP_04952860.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           1710a]
 gi|254220495|gb|EET09879.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           1710a]
          Length = 410

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 70/178 (39%), Gaps = 3/178 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++ ++     +  +      +L++++ +G S              ++       +A+ 
Sbjct: 3   ISSTQLYSLNVDMMNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++V   L T    L+S+  ++      L+   +G   ++     A  ++ S +  +
Sbjct: 63  TQNQTIVQTALQTEDTTLTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           T AN  D  G YLF+G   + +P +           + D   +     +++++  G +
Sbjct: 123 TLANTADGAGNYLFAGFQPTTQPFSNK--PGGGVTYAGDYGARAVQIADTRTVSQGDN 178


>gi|167909136|ref|ZP_02496227.1| flagellar hook-associated protein FlgL [Burkholderia pseudomallei
           112]
          Length = 410

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 50/406 (12%), Positives = 117/406 (28%), Gaps = 54/406 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++ ++     +  +      +L++++ +G S              ++       +A+ 
Sbjct: 3   ISSTQLYSLNVDMMNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++V   L T    L+S+  ++      L+   +G   ++     A  ++ S +  +
Sbjct: 63  TQNQTIVQTALQTEDTTLTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLN-----------GYFT-----KDSLAKKSFDQMLQG 168
           T AN  D  G YLF+G   + +P +            Y        D+      D     
Sbjct: 123 TLANTADGAGNYLFAGFQPTTQPFSNKPGGGVTYAGDYGARAVQIADTRTVSQGDNGANV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDF-IKQLEDKFSDDEYWANNWSNA-------SDH 220
           F+       L       S+     +    I    D  +  ++       A       +D+
Sbjct: 183 FMSVPFLGSLPVPAAGASNTGTGTIGAVSITNPSDPTNTHQFTITFGGTAAAPTYTVTDN 242

Query: 221 NIKYRIKDTEGIDVS-------------------------ANVNMRGIRDIMFVAVIGTE 255
           ++            S                               G      +  +   
Sbjct: 243 SVTPPTTTAAQAYSSGQGINLGGQTVAVSGKPAVGDTFTVTPAPQAGTDVFATLDTVIAA 302

Query: 256 F----LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
                 +      A         + +   ++ ++  +A +G   + +   +         
Sbjct: 303 LESPVGNSQTASTALTNTMATASTKLMNTMTNVLTVQASVGGRLQEVKAMQAVTTTNTLQ 362

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +S         A +Q   L N +  +     ++Q LS+  YL
Sbjct: 363 TTNSLSNLTDTNLPAAISQFLQLQNSLSAAQKAFVQMQNLSLFQYL 408


>gi|325289236|ref|YP_004265417.1| flagellar hook-associated protein 3 [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964637|gb|ADY55416.1| flagellar hook-associated protein 3 [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 458

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 41/129 (31%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             KL  +  + +  +         +  L+       I ++  +       ++ + + L  
Sbjct: 23  LSKLQAQASSQKKIEVPSDDPVVASRSLKLTSYVAKIQQQQKNAEDAGSWMTYTDSALEQ 82

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
           +  I+  +    V    G             + +     +  AN    G+Y+ +G ++ E
Sbjct: 83  IGDILTTIREKTVEAANGTLTAEDQAKILAEIEELESGIIEIANSAYGGRYVLAGYSTDE 142

Query: 146 KPLNGYFTK 154
            P+    T 
Sbjct: 143 APVEAVSTA 151


>gi|254239445|ref|ZP_04932767.1| flagellar hook-associated protein type 3 FlgL [Pseudomonas
           aeruginosa 2192]
 gi|126192823|gb|EAZ56886.1| flagellar hook-associated protein type 3 FlgL [Pseudomonas
           aeruginosa 2192]
          Length = 433

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST   F            D  +  E++ TG+              +L  +QE+    + 
Sbjct: 3   ISTIQAFNNSVNGISRNYADLNRTFEQISTGKRILTPADDPVGSVRLLRLDQEQGLNEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS  +  L S+  ++Q +        +G  D+N     A  LR   +  +
Sbjct: 63  KTGMTEAKNSLSQEETILRSVGNVLQRIREIAGQAGDGALDSNDKKSLASELRQREDELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
              N  D  G+YLFSG   S +P 
Sbjct: 123 NLLNSRDASGKYLFSGSQGSVQPF 146



 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 44/107 (41%), Gaps = 1/107 (0%)

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
            + +   ++   D  R+  T   L+ +    + +   +  +G     +     F+ +   
Sbjct: 327 ALESSTDNQAGNDAIRDA-TAVALTNLSAVAAAVDGGQGKIGARLNTVESTETFIDDVKL 385

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  + +S+   ++   A ++LS     ++ +     K+Q LS+ NYL
Sbjct: 386 VNASVMSQIQDLDYAEALSRLSLQSTIMDAAQQSYVKIQGLSLFNYL 432


>gi|238751768|ref|ZP_04613256.1| Flagellar hook-associated protein 3 [Yersinia rohdei ATCC 43380]
 gi|238710039|gb|EEQ02269.1| Flagellar hook-associated protein 3 [Yersinia rohdei ATCC 43380]
          Length = 320

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 93/274 (33%), Gaps = 31/274 (11%)

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFS 139
             LS     +Q +   ++   +    ++     A  L+   +  +  AN TD  G+Y+F 
Sbjct: 72  TVLSQATTTIQSIQSLIIGAAKDSLSDDDRASMATQLQGLKDQLLNQANSTDGNGRYMFG 131

Query: 140 GINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQ 199
           G  S   P        ++     D  +   ++ N    +              +   +  
Sbjct: 132 GFKSGTAPFA-VSATGAVTYVGGDVAITQKVDTNRSMTVGH--------TGDDIFMKLTS 182

Query: 200 LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSK 259
                  +   AN  + AS+ NI   I   + +  S +  ++G            +  S 
Sbjct: 183 NAKP---EPNDANGNAVASESNIFNTI---DTVLKSLSTPLQG------ATETVKQQASD 230

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
           +L  G R +            L+ ++  +A +G   + +        ++  I    +S  
Sbjct: 231 DLNKGIRGM---------ANSLNNVLSVQAEIGTQLEELVSLDSLGADRTLINKDRLSDL 281

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           + V+ ++A +        ++ SY   T +Q LS+
Sbjct: 282 VDVDWNSAISSYVMQQAALQASYTTFTNMQGLSL 315


>gi|124268247|ref|YP_001022251.1| flagellin-related hook-associated protein [Methylibium
           petroleiphilum PM1]
 gi|124261022|gb|ABM96016.1| flagellin-related hook-associated protein [Methylibium
           petroleiphilum PM1]
          Length = 398

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 55/394 (13%), Positives = 104/394 (26%), Gaps = 42/394 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STSS ++      +   ++  +  E+M + +  +                  +   A  
Sbjct: 3   VSTSSTYDATIANLQRRAQELSRSQEQMSSLKRVNRASDDPTAAARAERALAVEARSAAT 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       +S +++ L     ++Q     +V        + +    A  LR      +
Sbjct: 63  QRAIDASMNAVSQTESTLGDALGLLQQARDSVVSAGNASFSDAERANLAISLRQMRAELL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           T AN  D  G YLF+G  +S  P     T       S +                   L+
Sbjct: 123 TIANSPDGAGSYLFAGQGASNPPFVDTPTGVQFRGVSGETGAPSTEPLPLTMDGRSTWLQ 182

Query: 185 VSS-----MNAQQMTDFIK---------------QLEDKFSDDEYWANNWSNASDHNIKY 224
            SS     + +                                      ++   D N   
Sbjct: 183 ASSGNGVFVTSATQQAGTGWINTGSVIDPSAATGDPYSLSFTVAGGVTTYTVLRDGNPTA 242

Query: 225 ------------RIKDTEGIDVSANVNMRGIRDIMFVAVI---------GTEFLSKNLTD 263
                        I         A  +          A +          TE  +    +
Sbjct: 243 LTDVPYQSGQAIEIDGLSFTVTGAPADADRFDITPSSASLSIFDVLDRVATELETPGRNN 302

Query: 264 GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
           G         L  +    + +  QRAV G +   I+     L  +     T  S++  ++
Sbjct: 303 GQIAQSVATALRDIDASSAKLTAQRAVAGETLNRIDRAAERLSGQKLAAQTDRSQAEDLD 362

Query: 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              A +         E +      +Q LS+  YL
Sbjct: 363 MVEAISTFQKQQTGYEAALKSYASVQNLSLFQYL 396


>gi|78045209|ref|YP_359819.1| flagellar hook-associated protein 3 [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997324|gb|ABB16223.1| flagellar hook-associated protein 3 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 287

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 10/155 (6%)

Query: 21  ELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQ 80
               D  K  + +  G++         ++   +++  +     +   +       L+T+ 
Sbjct: 18  RTLADMEKSQQMLSNGKALTKPSDDPVKLLRAMKYRSDITQGEQYQRNIEDGLNWLNTTD 77

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
           A L+ +  ++Q +    V    G          A  ++   E     AN    G+Y+F G
Sbjct: 78  AALNELTNLLQRVKELTVYGANGALPQESLNSIAEEIKQIKEQVGVIANTQFAGKYIFGG 137

Query: 141 INSSEKPLNG----------YFTKDSLAKKSFDQM 165
               ++P +G          YF   S  K   + +
Sbjct: 138 TEVEKQPWDGSNWQGNSSGIYFEIGSNIKVQVNTV 172



 Score = 37.4 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 85/276 (30%), Gaps = 23/276 (8%)

Query: 90  VQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLN 149
            Q M+     L +   D  K         D  +      N+ D   +L    N+++  LN
Sbjct: 26  SQQMLSNGKALTKPSDDPVKLLRAMKYRSDITQGEQYQRNIEDGLNWL----NTTDAALN 81

Query: 150 GYFTKDSLAKKSFDQMLQGFLEENSKSLLA----GQHLEVSSMNAQQMTD----FIKQLE 201
                    K+       G L + S + +A        +V  +   Q          ++E
Sbjct: 82  ELTNLLQRVKELTVYGANGALPQESLNSIAEEIKQIKEQVGVIANTQFAGKYIFGGTEVE 141

Query: 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
            +  D   W  N S      I + I       +   VN  G+     V     + ++   
Sbjct: 142 KQPWDGSNWQGNSSG-----IYFEIGSN----IKVQVNTVGLPLFTNVMQTLDQIINHLT 192

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
                       L ++   L+ ++  RA +G     +   +  L  +       +SK+  
Sbjct: 193 AGDV--AAVSSDLGSLDNNLNTVLAVRADVGARTNRLELMQNRLLAQLETEKELLSKTED 250

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +       L    N    +  +  ++   +++++L
Sbjct: 251 ADIAATIIDLKNQENVYRSALAVGARILPPTLVDFL 286


>gi|292670030|ref|ZP_06603456.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648331|gb|EFF66303.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 450

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 8/170 (4%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKF--PINAGMLRDSYESFVTFANMTDE 133
           ++++Q  LS M+ I +      +       D      P  A  ++   +  ++  N    
Sbjct: 74  MNSTQTALSGMEDIQKTFKAKTIQGANDDKDEKSGDWPAIAREMKAGVQQIISLGNTQLG 133

Query: 134 GQYLFSGINSSEKPLNGYFTKD---SLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNA 190
            +Y+FSG    ++P       D       K+ D     F    S +  A    ++ S++ 
Sbjct: 134 DRYIFSGQADLKQPFTMTSEADMRRRGLAKTLDDRQAAFFNNASNNDSADFLHQMLSLDG 193

Query: 191 QQMTD-FIKQLEDKFSDDEYWANNWSN--ASDHNIKYRIKDTEGIDVSAN 237
                 ++  L       E+    + +  AS  +          I   AN
Sbjct: 194 SDGNTYYLNTLTGDIYTKEFVQEGYKDVVASGRSTVSTADRVGNITTGAN 243



 Score = 39.3 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 30/89 (33%)

Query: 269 LTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
           L+   ++         ++     G   +   +    L +    I   I+     +     
Sbjct: 361 LSSDGVTLADVANQVTLQAHTETGSRSRLYTDMTSILTDHAENITRDITNVSATDVAELA 420

Query: 329 AQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++      + MS  +  ++  LS+++YL
Sbjct: 421 TKMMQQQTIMSMSLSMGARILPLSLVDYL 449


>gi|206889250|ref|YP_002249840.1| flagellar hook-associated protein 3 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741188|gb|ACI20245.1| flagellar hook-associated protein 3 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 475

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 13/155 (8%)

Query: 1   MK-TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEW 55
           MK TTG    +    MN       +   K  +++ TG+     SD  + +    + I+++
Sbjct: 1   MKVTTGFFYKTFINDMNTQI----EAMYKAQKQLTTGKRVLSPSDDPVAI----SRIVKY 52

Query: 56  EQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAG 115
           + E + + E            S+ +  ++ ++ +        V               A 
Sbjct: 53  KTELSALDEYSRVIDTAKIYNSSLETAINDLKNMAIKAKQYAVNGSTDTLSATDRLALAQ 112

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            +    +  +   N    G+Y+F G  +   P+N 
Sbjct: 113 EVDTLIQRSIETINTKVSGRYIFGGYKADTPPVNS 147


>gi|167585201|ref|ZP_02377589.1| flagellar hook-associated protein FlgL [Burkholderia ubonensis Bu]
          Length = 413

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/367 (11%), Positives = 105/367 (28%), Gaps = 57/367 (15%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
                ++       +++   + +     L      L S+  ++ ++   LV   +G   +
Sbjct: 45  GAAQAVQLSMTSATLSQYTSNQNAALASLQAEDHALGSVNDVLTNIQTTLVRAGDGSLSD 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFT------------- 153
           +     A  ++ + +  +T AN  D  G YLF+G  +  +P                   
Sbjct: 105 SDRSALATQIQSARDQLLTIANSDDGAGNYLFAGFKNGSQPFTNKAGGGVNYVGDTGTRN 164

Query: 154 ---KDSLAKKSFDQMLQGF-----LEENSKSLLAGQHLEVSSMNAQQMTDFIKQL----E 201
               DS      D     F              +  +    +++   +T           
Sbjct: 165 VQIADSRTLSQGDNGAAVFMSVPTFGSQPVPAGSASNTGTGTISPVTVTSPSAATNNHQF 224

Query: 202 DKFSDDEYWANNWSNASDHNIKYR------------IKDTEGIDVSAN---VNMRGIRD- 245
                    A  ++   +  +               I    G+ V+ +    N       
Sbjct: 225 AIAFSGPAGALTYTVTDNTVVPPSTTAALPYTAGAAISLGGGMTVAVSGAPANGDSFTVS 284

Query: 246 -----------IMFVAVIGTEFLSKNLTDGARNVLTKKMLST----VQQGLSGIIEQRAV 290
                         +  I     + ++ +       K  ++     +   +  +   +A 
Sbjct: 285 PAPQAPGGADVFSTLDSIVAALKTPSVNNPVAMATLKNAMTAGATKLGNTMRNVTTIQAD 344

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
           +G  E+ I   +   Q  +  + + ++        +  +Q + L N +  +     ++Q 
Sbjct: 345 VGGREQEIKAMQAVTQTNSLQVSSNLADLTSTNIVSTISQFTQLQNALTGAQKAFVQMQN 404

Query: 351 LSILNYL 357
           LS+  Y+
Sbjct: 405 LSLFQYI 411


>gi|86356323|ref|YP_468215.1| flagellin C protein [Rhizobium etli CFN 42]
 gi|86280425|gb|ABC89488.1| flagellin C protein [Rhizobium etli CFN 42]
          Length = 342

 Score = 46.6 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 102/334 (30%), Gaps = 38/334 (11%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           TS+       + + +NK++ +  +++ +G   +      +  +       +  ++     
Sbjct: 28  TSAAAVNALAVLRSINKEASQTQQQVSSGYRIETAADDASYWSVATVMRSDSTNLGTIGD 87

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           +  L   ++  +   ++S   +V  +   LV   E  TD +K        ++  +S V  
Sbjct: 88  ALGLGAAKVDATYTAMNSAIDLVSQIRAKLVAAREPGTDKDKINAEISEYKEQLKSVVES 147

Query: 128 ANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSS 187
              +  G+     +NS +     +             ++ GF+  ++    A      SS
Sbjct: 148 --TSFAGENWL--LNSDKTAPPTWS------------VISGFVRASTGEYQAQTIDFPSS 191

Query: 188 MNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM 247
                             D          AS       I      +       R    + 
Sbjct: 192 QT-------------ILIDKNN-------ASGGLFTKAIDAQAINNTGTG--PRNYYLLD 229

Query: 248 FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN 307
             +          +     +     ML       S +    A +G+ +  I+++  +  +
Sbjct: 230 AGSTTPATGSEIAIDKNTTDAQLVDMLDVTDALFSSLTTTAASIGVMKTRIDDQIDYAAD 289

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
            ++ ID  +   +  +   A  +   +  + +M+
Sbjct: 290 LSDSIDKSVGALVDTDMDEASIRQKAIETQKQMA 323


>gi|148269977|ref|YP_001244437.1| flagellar hook-associated protein 3 [Thermotoga petrophila RKU-1]
 gi|147735521|gb|ABQ46861.1| flagellar hook-associated protein 3 [Thermotoga petrophila RKU-1]
          Length = 304

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++   I +R+    +   K   KLH+++ +G    Y            +    K  + + 
Sbjct: 3   VTNKMISDRVLFNIQTSLKRIAKLHDQLSSGYKVRYPSDDAVVAKRASDILTRKRELEQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             S   V   ++   + L ++  I Q +   LV    G     +    A  +    E+ V
Sbjct: 63  QRSVDHVQTYVNAYDSALQTVSSITQRLRELLVRAANGTLSKAEREAIAEEIDKIKENLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNG 150
             AN     +Y+FSG +   +P+  
Sbjct: 123 EVANTRIGNEYIFSGYDVFSQPVEN 147


>gi|152987902|ref|YP_001349643.1| flagellar hook-associated protein FlgL [Pseudomonas aeruginosa PA7]
 gi|150963060|gb|ABR85085.1| flagellar hook-associated protein 3 [Pseudomonas aeruginosa PA7]
          Length = 433

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST   F            D  +  E++ TG+              +L  +QE+    + 
Sbjct: 3   ISTIQAFNNSVNGISRNYADLNRTFEQISTGKRILTPADDPVGSVRLLRLDQEQGLNEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS  +  L S+  ++Q +        +G  D+N     A  L    +  +
Sbjct: 63  KTGMTEAKNSLSQEETILRSVGNVLQRIREIAGQAGDGALDSNDKKALASELSQREDELL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
              N  D  G+YLFSG   S +P 
Sbjct: 123 NLLNSRDASGKYLFSGSQGSVQPF 146



 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 44/107 (41%), Gaps = 1/107 (0%)

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
            + +   ++   D  R+  T   L+ +    + +   +  +G     +     F+ +   
Sbjct: 327 ALESSTDNQAGNDAIRDA-TAVALTNLSAVAASVDGGQGRIGARLNTVESTETFIDDVKL 385

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +  + +S+   ++   A ++LS     ++ +     K+Q LS+ NYL
Sbjct: 386 VNASVMSQIQDLDYAEALSRLSLQSTIMDAAQQSYVKIQGLSLFNYL 432


>gi|255022061|ref|ZP_05294067.1| Flagellar hook-associated protein flgL [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968547|gb|EET26103.1| Flagellar hook-associated protein flgL [Acidithiobacillus caldus
           ATCC 51756]
          Length = 413

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 49/407 (12%), Positives = 117/407 (28%), Gaps = 54/407 (13%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  + IST   +        +       L  ++ TG + D      A     L+  Q+ +
Sbjct: 1   MSISPISTPVSYLIPTNAILQDQSQLTTLDRQLATGLAVDSPADNPAAAAQSLQIGQQLS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            ++    +  +    L    + + S+  +VQ +    +      T+       A  +++ 
Sbjct: 61  ALSLDGTTAGIGQSDLQNLSSTIGSISTLVQSLRQTALAAANATTNGQDRQALADSVQEQ 120

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTK------------------------- 154
            +  +   N    +G YL SG  S+ +P     ++                         
Sbjct: 121 LQQLLQLGNSQTPDGNYLLSGSQSNTQPFLDSGSEVTYQGDAGTNTLQIAPGLTIPTSLS 180

Query: 155 --------DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSD 206
                    +    +      G     + S+        ++        +        S 
Sbjct: 181 GQFLLMDIPTGNGYAVVNASSGNQGTATISVGGVTDPAAAAEMDANHQKYSVTFSVATSG 240

Query: 207 DEYWANNWSNASDHNIKY---------RIKDTEGIDVSANVNMRGI-------RDIMFVA 250
               +   +NAS   +            +  +E        N           + +    
Sbjct: 241 VAQSSYAITNASGTVVGSGVYTPGTSIDVAGSEFTINGNPANGDSFSIDPARQQSLFQTV 300

Query: 251 VIGTEFLSKNLTDGA----RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
                 LS  +++GA           +++ + QGL+ ++  +A +G S   I       +
Sbjct: 301 QSMLTLLSTGVSNGAAGAQYEQGMSNVIANLNQGLTRLLTGQAAVGSSLAQIQAITQVNE 360

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            +++      S  I         Q +     ++ +    + +Q L++
Sbjct: 361 TESSNDQIAQSSLISANLPAVATQFAQGSASLQAALSAFSAMQNLNL 407


>gi|281412142|ref|YP_003346221.1| flagellar hook-associated protein 3 [Thermotoga naphthophila
           RKU-10]
 gi|281373245|gb|ADA66807.1| flagellar hook-associated protein 3 [Thermotoga naphthophila
           RKU-10]
          Length = 304

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++   I +R+    +   K   KLH+++ +G    Y            +    K  + + 
Sbjct: 3   VTNKMISDRVLFNIQTSLKRIAKLHDQLSSGYKVRYPSDDAVVAKRASDILTRKRELEQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             S   V   ++   + L ++  I Q +   LV    G     +    A  +    E+ V
Sbjct: 63  QRSVDHVQTYVNAYDSALQTVSSITQRLRELLVRAANGTLSKAEREAIAEEIDKIKENLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNG 150
             AN     +Y+FSG +   +P+  
Sbjct: 123 EVANTRIGNEYIFSGYDVFSQPVEN 147


>gi|15642857|ref|NP_227898.1| flagellar hook-associated protein 3 [Thermotoga maritima MSB8]
 gi|4980571|gb|AAD35176.1|AE001695_2 flagellar hook-associated protein 3 [Thermotoga maritima MSB8]
          Length = 304

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++   I +R+    +   K   KLH+++ +G    Y            +    K  + + 
Sbjct: 3   VTNKMISDRVLFNIQTSLKRIAKLHDQLSSGYKVRYPSDDAVVAKRASDILTRKRELEQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             S   V   ++   + L ++  I Q +   LV    G     +    A  +    E+ V
Sbjct: 63  QRSVDHVQTYVNAYDSALQTVSSITQRLRELLVRAANGTLSKAEREAIAEEIDKIKENLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNG 150
             AN     +Y+FSG +   +P+  
Sbjct: 123 EVANTRIGNEYIFSGYDVFSQPVEN 147


>gi|170288662|ref|YP_001738900.1| flagellar hook-associated protein 3 [Thermotoga sp. RQ2]
 gi|170176165|gb|ACB09217.1| flagellar hook-associated protein 3 [Thermotoga sp. RQ2]
          Length = 304

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++   I +R+    +   K   KLH+++ +G    Y            +    K  + + 
Sbjct: 3   VTNKMISDRVLFNIQTSLKRIAKLHDQLSSGYKVRYPSDDAVVAKRASDILTRKRELEQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             S   V   ++   + L ++  I Q +   LV    G     +    A  +    E+ V
Sbjct: 63  QRSVDHVQTYVNAYDSALQTVSSITQRLRELLVRAANGTLSKAEREAIAEEIDKIKENLV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNG 150
             AN     +Y+FSG +   +P+  
Sbjct: 123 EVANTRIGNEYIFSGYDVFSQPVEN 147


>gi|152980733|ref|YP_001353118.1| FlgL flagellar hook-associated proteins 3 [Janthinobacterium sp.
           Marseille]
 gi|151280810|gb|ABR89220.1| FlgL flagellar hook-associated proteins 3 [Janthinobacterium sp.
           Marseille]
          Length = 404

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 1/186 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST++IFE  +    ++     K  +++ +G              + L  +Q  +   + 
Sbjct: 3   ISTNTIFEMGSGKIGDMTLAMFKTQQQIASGLRILSPADDPVAAAAALGIDQAISINNQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     LS  ++ L S+  ++Q +   +V       D+++       LR+++E  +
Sbjct: 63  ATNRANAKSALSEEESVLQSVTTLLQSIKTSVVGSGNASMDDSQRQAYVTQLRNNFEELL 122

Query: 126 TFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN     G YLF G     KP          +     +MLQ        S  +G  + 
Sbjct: 123 GLANTRGANGDYLFGGYQVGNKPFTESAGGAVYSGDQGQRMLQVGAARQLSSSDSGSSIF 182

Query: 185 VSSMNA 190
              M  
Sbjct: 183 EGGMTG 188


>gi|114562349|ref|YP_749862.1| flagellar hook-associated protein FlgL [Shewanella frigidimarina
           NCIMB 400]
 gi|114333642|gb|ABI71024.1| flagellar hook-associated protein 3 [Shewanella frigidimarina NCIMB
           400]
          Length = 401

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 144/402 (35%), Gaps = 53/402 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  +F++           +  +  ++ +G+  +           I   +Q+   I + 
Sbjct: 3   ISTGQMFQQNTNSILNKQSATNTIMAQIDSGKRVNTAGDDPVAAIGIDNLKQKNTLIDQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +    T  +  +++ L     +V  M   ++  + G   + +  + A  +R S E  +
Sbjct: 63  VKNIDYATSHIQQAESQLGQADTLVGSMKESVLRGINGSMTSAERQVIADDMRQSLEQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           + AN  D  G Y+F+G  ++  P    F  +     S D  ++         +      +
Sbjct: 123 SIANTKDESGNYIFAGNKTNSAPFA--FANNGDVVYSGDSGIRKSNVAAGVQVNTNVPGD 180

Query: 185 VSSMNA-QQMTDF-----------IKQLEDKFSDDEYWA---NNWSNASDHNIKYRIKDT 229
            + MNA   M D+           +     K +D   +     ++S A D      I  T
Sbjct: 181 AAFMNAPNAMGDYGVNYSSSQQGDLVVSSAKITDSTTYTPGSYSFSFADDGAGGLNISVT 240

Query: 230 EGI----------DVSANVNMRGIR------------------------DIMFVAVIGTE 255
           +            D S  V++ GI                         D    A+   E
Sbjct: 241 DSAAPPVTTVTAFDASVPVSVSGIVVKVDGEPQAGDSFSIEEVAQVSIFDTFSKAIALFE 300

Query: 256 FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
             +   T   ++ L  ++L+ +  G++ + +QR++ G S K + +      ++  I  + 
Sbjct: 301 SGNDTQTPAGQSELA-QLLNNIDSGVNQMSQQRSLTGNSLKVLQQYSDNHIDEKLINTSA 359

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +SK   ++  +A  +       +  +  + +K+   S+ +Y+
Sbjct: 360 LSKLEDLDFASAITEFEKQQVALSAASSLFSKVSSTSLFDYI 401


>gi|290474981|ref|YP_003467865.1| flagellar hook-filament junction protein [Xenorhabdus bovienii
           SS-2004]
 gi|289174298|emb|CBJ81088.1| flagellar biosynthesis; hook-filament junction protein [Xenorhabdus
           bovienii SS-2004]
          Length = 320

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 115/353 (32%), Gaps = 45/353 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           +ST+ ++ +            ++  E++ TG+     SD  L      +  +   Q ++ 
Sbjct: 3   VSTNLLYSQKMDGILGAQSKWMRYGEQLSTGKRVINPSDDPLA----ASQSIMVSQSESK 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             + + +       +S   +  S++  +  ++   LV   + ++D ++       L    
Sbjct: 59  NQQFMTARIFARNSMSAQLSITSNIVSVATNVFETLVAAADEQSDQDRESYAQQ-LEGFK 117

Query: 122 ESFVTFAN-MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +  +   N     G+Y+F G  +   P         +  K   + +   +++N   ++A 
Sbjct: 118 QQLLNLGNKTDGNGRYIFGGYKTDVPPFKA-DESGKIHYKGGHEEITQQVDDNRSMIIAH 176

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V                 +       A+ ++      +   IK       +A+ + 
Sbjct: 177 TGKQVFLSTT-------TNPIKEPGGGTGEADVFAT-----LDLAIKALRTPYSTASESE 224

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
           +                     + A   L  K    ++  L       AVLG+  + + +
Sbjct: 225 K---------------------NDAME-LINKANRGIRNSLDNFSSVEAVLGLQLQELEQ 262

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                  ++        + + V+  ++ +        ++ SY   T L+ LS+
Sbjct: 263 LDSLGSERSISNKVRTGELVDVDWASSISSYYQQQAALQASYKAFTDLKGLSL 315


>gi|117928039|ref|YP_872590.1| flagellar hook-associated protein 3 [Acidothermus cellulolyticus
           11B]
 gi|117648502|gb|ABK52604.1| flagellar hook-associated protein 3 [Acidothermus cellulolyticus
           11B]
          Length = 298

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 32/84 (38%)

Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
           LS +   L  +   +A  G +   I         K N +   +S    V+   A  +L+ 
Sbjct: 214 LSLIAGALDRMTSAQATEGAAYNRITAMNNAAGQKLNTLTGNLSDVQDVDTAQAVTELTM 273

Query: 334 LINKIEMSYMITTKLQKLSILNYL 357
                + S     ++ ++S+ ++L
Sbjct: 274 QQVSYQASLAAMARVLQMSLTDFL 297


>gi|296157448|ref|ZP_06840283.1| flagellar hook-associated protein 3 [Burkholderia sp. Ch1-1]
 gi|295892220|gb|EFG72003.1| flagellar hook-associated protein 3 [Burkholderia sp. Ch1-1]
          Length = 407

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 48/404 (11%), Positives = 124/404 (30%), Gaps = 52/404 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++  F        +      +L+ E+ +G S              ++       +++ 
Sbjct: 3   ISSTQYFNMNVATMSDQQAQLSQLYAEISSGVSLSTPSDNPLGAAQAVQLSSTATTLSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L      L S+  ++Q +   ++   +G  ++      A  L+      +
Sbjct: 63  TTNQGTALASLQQEDTTLGSVNTVLQTIHTLVLRAGDGSLNDGDRGSIATQLQSLRSQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTK----------------DSLAKKSFDQMLQG 168
           T AN TD +G YLF+G  SS +P                       DS   ++ D  +  
Sbjct: 123 TLANSTDPQGNYLFAGYQSSAQPYTTNSAGVVTYSGDTGTPVVQITDSHVVQTGDNGISI 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
           F         A       +     ++          ++ + ++ N+S+A+ + +      
Sbjct: 183 FGSVAPIGTSAVPAATTGNTGTGVISSVSLNNPTDPTNADKYSINFSSATTYTVSQTDPA 242

Query: 229 TEGIDVS-----------------------------------ANVNMRGIRDIMFVAVIG 253
           T  +  S                                      +M    ++  +    
Sbjct: 243 TGAVTTSAPQAFTAGSAITLGGQSVTITGAPNAGDSFTVTPATQGSMDVFANLSQLITTL 302

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
              +S   +  +        ++ ++  ++ ++  +A +G  E+ +   +   Q       
Sbjct: 303 QTPVSGGASTASFQSALTTSMAQLENTMNNVVTAQAAVGGREQEVQALQTVTQTNTLQTS 362

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + ++     +      + +     ++ +     K+Q +S+  YL
Sbjct: 363 SNLADLTQTDMVKTIGKYTMTQAALQAAQQAFAKIQNISLFQYL 406


>gi|307721024|ref|YP_003892164.1| flagellin domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306979117|gb|ADN09152.1| flagellin domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 708

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 83/229 (36%), Gaps = 16/229 (6%)

Query: 20  KELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTS 79
            ++N +   +++++ +G    Y        T  +  + E   I +   S     K  + +
Sbjct: 18  LKINNELFDVNKQIASGLKIQYAKDDVKTFTETMRLDNELVTIGQVKKSTESGYKVSNQT 77

Query: 80  QAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFS 139
              L+  +  +      LV    G   ++     AG LR   + F   AN +  GQ+LFS
Sbjct: 78  DVVLNEFETSMNRTRTLLVNAANGTHSDDSLDAIAGELRGLEKHFKNLANTSINGQFLFS 137

Query: 140 GINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS---------SMNA 190
           G   + +P++      +      D  +  FL  NS         E+          ++  
Sbjct: 138 GSAVNTRPIDD-----NGVYHGNDAGMNSFLGSNSTQKYNLTGSELFLGEDRLTRRNVTT 192

Query: 191 QQMTDFIKQLEDKFSDDEYWANNWSN-ASDHNIKYRIKDTE-GIDVSAN 237
             + + + +   +F+       +++    D  I+  + DT+  +D +  
Sbjct: 193 NVIQENLSKKYPEFTATSAENGSFATITKDDTIRDLMGDTDSTVDTATQ 241



 Score = 37.4 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI--------------SKSIGVEQHTA 327
            GI    A+L   + +I+     +  ++N + + +              S  I  +   A
Sbjct: 619 QGIENAIAMLDKLQSHISRSHSTVGAQSNTLTSSLERSQLLEISTMTLRSSVIDTDVAEA 678

Query: 328 HAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +L  L    +       K+ +LS++NYL
Sbjct: 679 SLKLQQLNLNYQAMLSTVGKVSQLSLVNYL 708


>gi|83720036|ref|YP_440809.1| flagellar hook-associated protein FlgL [Burkholderia thailandensis
           E264]
 gi|167617594|ref|ZP_02386225.1| flagellar hook-associated protein FlgL [Burkholderia thailandensis
           Bt4]
 gi|257140540|ref|ZP_05588802.1| flagellar hook-associated protein FlgL [Burkholderia thailandensis
           E264]
 gi|83653861|gb|ABC37924.1| flagellar hook-associated protein 3 [Burkholderia thailandensis
           E264]
          Length = 410

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 72/185 (38%), Gaps = 3/185 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS+S ++     +  +      +L++++ +G S              ++       +++ 
Sbjct: 3   ISSSQLYSLNVDMMNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++V   L T    L+S+  ++      ++   +G   ++     A  ++ S +  +
Sbjct: 63  TQNQTIVQTALQTEDTTLTSVNDVLNAAYQSIMHAGDGGLSDSDRAALAAQIQGSRDHLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           T AN  D  G YLF+G   + +P +           + D   +     +++++  G +  
Sbjct: 123 TLANTADGAGNYLFAGFQPTTQPFSNK--PGGGVTYAGDYGARTVQIADTRTVSQGDNGA 180

Query: 185 VSSMN 189
              M+
Sbjct: 181 SVFMS 185


>gi|264676577|ref|YP_003276483.1| flagellar hook-associated protein 3 [Comamonas testosteroni CNB-2]
 gi|262207089|gb|ACY31187.1| flagellar hook-associated protein 3 [Comamonas testosteroni CNB-2]
          Length = 404

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 60/411 (14%), Positives = 125/411 (30%), Gaps = 62/411 (15%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEW 55
           M    I T+++++             V L E+   G+       D      A        
Sbjct: 1   MSINRIGTANMYDSTINNLGSRQSSLVDLMEKTTAGKRVLRASDDPVAAAQAERARTRIT 60

Query: 56  EQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAG 115
             E +        + +        ++ L      +QD    +V    G  D         
Sbjct: 61  RSENDQRVLGAQRDVIAQG-----ESELGKAHGALQDFRDLVVQAGNGSYDQVARDALVQ 115

Query: 116 MLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNG-----YFTKDSLAKKSFDQMLQGF 169
            ++   +  + +AN  D  G  +F G+ S + PL           +       D  L   
Sbjct: 116 QMQSLRDQILGYANAKDSNGLPIFRGLGSPDTPLQSTPPGSSSQLNPGQSTGSDNGLPIS 175

Query: 170 LEENSKSLLAGQHLEVSSMNAQQMTDF---------------------IKQLEDKFSDDE 208
           L+ ++  L       V  +N                            +   +D  + + 
Sbjct: 176 LDGHAAWLNVPTGNGVFVVNGAASNSGKAWADVGSVTDPSKVTGDSYTLVFTKDPTTGEV 235

Query: 209 YWANNWSNASDHN----------------------IKYRIKDTEGIDVSANVNMRGIRDI 246
            +  N S+A+  N                      IK    D +   +S +        +
Sbjct: 236 SYEINSSSATATNPVVPTTPYKEGQAITVGGQQISIKGTPADGDSFTMSPSTRTDIFSVL 295

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
                I T       +   +  L  + LS +  G++ +   R+  G   K  +     ++
Sbjct: 296 DQA--IATVKGGTGGSTALQQGL-GRALSELDSGMNRVQAMRSYAGDQLKRADGLESDMK 352

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++    +   S++  ++  TA +Q+ T    ++ +     ++QKLS+ NY+
Sbjct: 353 DQALTQEGARSRAEDIDMITALSQVDTQKVGLQAALQSYAQMQKLSLFNYI 403


>gi|296135665|ref|YP_003642907.1| flagellar hook-associated protein 3 [Thiomonas intermedia K12]
 gi|295795787|gb|ADG30577.1| flagellar hook-associated protein 3 [Thiomonas intermedia K12]
          Length = 417

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS  +                L +++ TG +              +    + + +A  
Sbjct: 3   ISTSQFYAASLTGILNQQNTLGTLSQQLSTGSTLVNPSDQPVAAAQNVALTGQIDRLAGY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L    A + S+  +V       V +  G   +      A  ++   +   
Sbjct: 63  AQNGQNAQNSLQLESATVQSVTTLVSQARQLAVQMNNGTVSSQDLQNAAATMQGYVQQLA 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPL 148
            +AN  D  G YLF+G  S  +P 
Sbjct: 123 QYANTQDGQGNYLFAGSKSGAQPF 146


>gi|330808202|ref|YP_004352664.1| flagellar hook-associated protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376310|gb|AEA67660.1| flagellar hook-associated protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 521

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 1/145 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS  +E      ++     VK  EE  +    +         + +L+   + + +++ 
Sbjct: 3   ISTSQFYESTAANYQKNFAKVVKTSEEASSLVRVNTAADDPVGASRLLQLGNQASMLSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + +   L T++A ++S+  ++Q      V        +      A  L    +  +
Sbjct: 63  EANVTTIKATLGTTEAVMTSIGNVLQRAKELAVSAGNAAYTDADRKAVASELGSIEDQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN 149
           +  N  D  G+Y+FSG      P  
Sbjct: 123 SLMNTKDENGKYIFSGSKGDVVPFT 147



 Score = 36.6 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 63/221 (28%), Gaps = 20/221 (9%)

Query: 150 GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY 209
             FT       +    + G    +  +  A      + +     TDF        + D  
Sbjct: 304 DTFTPARSPGNTTATQITGSQITDPVAYHASFPTGAAVLKFTSATDF-DLYAAPLNADSK 362

Query: 210 WANNWSNASDHNIKYRIKDTEGIDVSANVNMR---------------GIRDIMFVAVIGT 254
             ++ + A +      +     ++ +   N +                +  +       T
Sbjct: 363 PVSSGTLAGNVATASGVSF--TLNGAVAANDQFSIAVNTHETQNVLDTVNQLRTALNTPT 420

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
           +    N+     N      +  +  G   +    + +G   ++++ +    Q+       
Sbjct: 421 D--GDNIAIQKLNASLASAIGNLASGTDQLTSALSSVGGRGQSLDTQSDTNQSFVLANTQ 478

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
             S     +      +L+     ++ S +  +K+ +L + N
Sbjct: 479 TQSAIRDSDAAEVMTRLTLQQTMLQASQLAFSKIAQLGLFN 519


>gi|226225743|ref|YP_002759849.1| flagellar hook-associated protein 3 [Gemmatimonas aurantiaca T-27]
 gi|226088934|dbj|BAH37379.1| flagellar hook-associated protein 3 [Gemmatimonas aurantiaca T-27]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/352 (10%), Positives = 92/352 (26%), Gaps = 52/352 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ S I     +  +   +   +L +++ TG +             I+        + + 
Sbjct: 3   VTNSIITANSKLRLQTGLQGIDRLRDDISTGVTIRKISDNATSGGEIVRIGSSMRALTQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +      R    +  L+ +   V       +  +          +    +        
Sbjct: 63  KRNTDSGIARAQAEEGVLNQLTNTVTRASEIALTQIGTTATAQSRLVVKAEVDQLLNLAS 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
           +  N     +YLF G  ++E PL       + A  SF +++      +    +  +  + 
Sbjct: 123 SLGNTRFGDEYLFGGNRANEAPLFD----PAPATGSFSRLMLAGNPVDPSGNITLEVGDN 178

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
             +               F D +                                     
Sbjct: 179 KFVTPTH------NATQVFLDTDA------------------------------------ 196

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
           +  +  + T     +          +   + +    S +       G     + + +V L
Sbjct: 197 LAALRDLSTALGDND------TAAIQAATARLNTATSNVQTLIGAQGARVNEMEDAKVNL 250

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 +  + S     E   A  +L       + +   T+++  LS+ NYL
Sbjct: 251 ATMEMNLKMFRSDLRDTEIDQAMVELVGKQTLYQAAMSATSRILGLSLANYL 302


>gi|167579497|ref|ZP_02372371.1| flagellar hook-associated protein FlgL [Burkholderia thailandensis
           TXDOH]
          Length = 410

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 72/185 (38%), Gaps = 3/185 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS+S ++     +  +      +L++++ +G S              ++       +++ 
Sbjct: 3   ISSSQLYSLNVDMMNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++V   L T    L+S+  ++      ++   +G   ++     A  ++ S +  +
Sbjct: 63  TQNQTIVQTALQTESTTLTSVNDVLNAAYQSIMHAGDGGLSDSDRAALAAQIQGSRDHLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           T AN  D  G YLF+G   + +P +           + D   +     +++++  G +  
Sbjct: 123 TLANTADGAGNYLFAGFQPTTQPFSNK--PGGGVTYAGDYGARTVQIADTRTVSQGDNGA 180

Query: 185 VSSMN 189
              M+
Sbjct: 181 SVFMS 185


>gi|152975151|ref|YP_001374668.1| flagellar hook-associated protein FlgL [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023903|gb|ABS21673.1| flagellar hook-associated protein 3 [Bacillus cytotoxicus NVH
           391-98]
          Length = 287

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 8/168 (4%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST             L+        ++ +G+     SD  L  G            +  
Sbjct: 3   VSTFQNANWAKNQLMGLSVQQQYHRNQVTSGKKNLHMSDDPLAAGKSFAIEHSLANIEQM 62

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S ++    LS ++A L  + K +  +   ++  + G     +       +    
Sbjct: 63  QKDLKDSKNV----LSQTEAALQGITKSLTRVDQLVLQAVNGTNGPKEMKAIGTEVNQLL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF 169
           +  V  AN  ++G+YLF G +  ++P     T     K    ++  G+
Sbjct: 119 KQVVYLANTKEQGRYLFGGESVEKQPFTEDGTYQGGNKNVTWELNDGY 166



 Score = 36.6 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 33/79 (41%)

Query: 279 QGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI 338
           Q L  ++ Q   LG     ++     L  +N  +     +   V+   A + L+ +    
Sbjct: 209 QNLDKVLNQTTELGAVMNTLDTFNTILNEQNLALQENRKEIEDVDLAVAISDLAYINATY 268

Query: 339 EMSYMITTKLQKLSILNYL 357
           E +    + + K+SIL+Y+
Sbjct: 269 EATLKSVSTMSKISILDYM 287


>gi|83593863|ref|YP_427615.1| flagellar hook-associated protein FlgL [Rhodospirillum rubrum ATCC
           11170]
 gi|83576777|gb|ABC23328.1| putative flagellar hook-associated protein 3 FlgL [Rhodospirillum
           rubrum ATCC 11170]
          Length = 296

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 59/229 (25%), Gaps = 3/229 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++TS++   +         D      +  +G        LG    + +    +       
Sbjct: 3   VATSTMSSSLITQALRNQGDYNSALNQQSSGLKDPSLNGLGGLAGTTVSLASDLKRSDHL 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           +   +     +  +   +S +  +V+     +   + G  D +K                
Sbjct: 63  VTQATTAQSEVEVAYGKVSKIADLVKTAQVAITAAISG--DVSKATGLQASAEGWLTDIA 120

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N    G Y+F+G  S   P+         +                     G     
Sbjct: 121 AMLNTQVGGTYVFAGAGSVGAPV-DLSAYGGASSTDTSYYSGTTTPTQMMVDAEGGIEYG 179

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDV 234
           +  N     + +K L D  + +        +AS           + ++ 
Sbjct: 180 TLANDPAFANTLKALYDIANTNPPTLATLQSASTALSAATTDLGKTLET 228


>gi|34497165|ref|NP_901380.1| flagellar hook-associated protein FlgL [Chromobacterium violaceum
           ATCC 12472]
 gi|34103022|gb|AAQ59385.1| flagellar hook-associated protein 3 [Chromobacterium violaceum ATCC
           12472]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 119/351 (33%), Gaps = 54/351 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++     + +  +  +    +L ++M +GQS     +       +L  ++E+  + + 
Sbjct: 3   ISSNQYQSVVLLAMQNSSAGMSELLQKMSSGQSMLVPSENPIASVRLLRLQREEASLQQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +  +L+ ++  L  +   ++D    LV        ++     A  L    +S +
Sbjct: 63  RDNIGALKSQLTKNETLLDGISANLRDARDLLVAAANQPPTDD-LKAMASPLVSLRDSIL 121

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN  D  G+Y+FSG   +   +    T+ + ++  ++        +  +  +     E
Sbjct: 122 YAANTKDSEGRYMFSGSAVNNAAIVVDDTQPAGSRYRYNG-----NGDRQRVTVGEGVTE 176

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            S++  + M   + QL+   +                       +  +D         IR
Sbjct: 177 ASNVTLESMAPLLNQLDKAIATL--------------------QSPTLDSKDPAVGATIR 216

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           ++M                             V   L  +    + LG ++  +      
Sbjct: 217 EVMGG---------------------------VDTALDRVGGTISELGGAQNVLKTLDGN 249

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
             + +      I +   ++  TA+  ++ L   ++ S     K+ +L++ +
Sbjct: 250 HDSLSLANQESIIELGSLDYGTAYIAMNNLSMALQTSQKAYGKVSQLTLFD 300


>gi|51246542|ref|YP_066426.1| flagellar hook-associated protein 3 (FlgL) [Desulfotalea
           psychrophila LSv54]
 gi|50877579|emb|CAG37419.1| related to flagellar hook-associated protein 3 (FlgL) [Desulfotalea
           psychrophila LSv54]
          Length = 757

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 56/148 (37%), Gaps = 3/148 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK T  ST     ++        K    L+ +  +G   +      A +  +L    +  
Sbjct: 1   MKVTNSSTY---RQLLTNINRNQKSLQNLYLQNSSGIKFNRASDNPAAILPVLSSRSQIT 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                L +      +++++   L +M+ ++Q +    V  +          + A  + + 
Sbjct: 58  LNERFLSTLGSSADQMASTDTSLGAMENVLQRVKEISVNTINASLSQKDLNVFADEVGEL 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPL 148
            +  +  AN   +GQY+FSG + ++ P 
Sbjct: 118 KKQMLDTANAQVDGQYIFSGYSVTDAPF 145



 Score = 40.8 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 288 RAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTK 347
           R+ LG+    I +     +     + + +S+    +       L      +E +  ++ K
Sbjct: 688 RSQLGVKASRIAQSTDQREGFLIDVKSTLSRYEDADMIKTLNDLMLQSTALEAALSVSGK 747

Query: 348 LQKLSILNYL 357
           + KLSILNYL
Sbjct: 748 ISKLSILNYL 757


>gi|225569937|ref|ZP_03778962.1| hypothetical protein CLOHYLEM_06032 [Clostridium hylemonae DSM
           15053]
 gi|225161407|gb|EEG74026.1| hypothetical protein CLOHYLEM_06032 [Clostridium hylemonae DSM
           15053]
          Length = 332

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 100/352 (28%), Gaps = 24/352 (6%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+T+ I                +   +  TG+      +  +        E       + 
Sbjct: 4   ITTNMIRRNYQNNLNSTLSGLEQARRQAETGRRFSKSYEDPSAAAKATILENRYARNGDY 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
            ++     K   T +  L  + KI +++     +     T+ +     A   R+  +S +
Sbjct: 64  RNAVEDTMKWQDTQEDVLMQLGKIAEEVNKNYGVEAVSGTNASVRDTYAATFREMQKSMI 123

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N      +  +G +    P           K+      +G    +  +  A + L  
Sbjct: 124 YALNTKYGDTFAMAGSDGQNAPFE--------LKEDGTVTYRGLDVNDPANTDALKALSR 175

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
                     +I        D           S           + +    + +      
Sbjct: 176 E-------HSYIDLGFGLTFDGGG-----EIVSSSAFDAAFPGIKAVGFGQSDDGTSNNI 223

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305
           I+ +  +       N  + A   L  +      +G   +      +G   K ++  +  L
Sbjct: 224 IVLMGQMADVLEEDNFDEAAYKKLWTQ----FDKGAGDLQNCLTEIGTKTKLLSSTKDRL 279

Query: 306 QNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +N+   I T    ++ + +  A    S       ++  I T L   S+L+++
Sbjct: 280 ENEKLNITTQFDSTVNINEAEALMNFSYAQYVYNVALKIGTSLLSNSLLDFM 331


>gi|91785626|ref|YP_560832.1| flagellar hook-associated protein FlgL [Burkholderia xenovorans
           LB400]
 gi|91689580|gb|ABE32780.1| Flagellar hook-associated protein [Burkholderia xenovorans LB400]
          Length = 407

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 48/404 (11%), Positives = 124/404 (30%), Gaps = 52/404 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++  F        +      +L+ E+ +G S              ++       +++ 
Sbjct: 3   ISSTQYFNMNVATMSDQQAQLSQLYAEISSGVSLSTPSDNPLGAAQAVQLSSTATTLSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L      L S+  ++Q +   ++   +G  ++      A  L+      +
Sbjct: 63  TTNQGTALASLQQEDTTLGSVNTVLQTIHTLVLRAGDGSLNDGDRGSIATQLQSLRSQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTK----------------DSLAKKSFDQMLQG 168
           T AN TD +G YLF+G  SS +P                       DS   ++ D  +  
Sbjct: 123 TLANSTDPQGNYLFAGYQSSAQPYTTNSAGVVTYSGDTGTPAVQITDSHVVQTGDNGISI 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
           F         A       +     ++          ++ + ++ N+S+A+ + +      
Sbjct: 183 FGSVAPIGTSAVPAATTGNTGTGVISSVSLNNPTDPTNADKYSINFSSATTYTVSQTDPA 242

Query: 229 TEGIDVS-----------------------------------ANVNMRGIRDIMFVAVIG 253
           T  +  S                                      +M    ++  +    
Sbjct: 243 TGAVTTSAPQAFTAGSAITLGGQSVTITGAPNAGDSFTVTPATQGSMDVFANLSQLITTL 302

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
              +S   +  +        ++ ++  ++ ++  +A +G  E+ +   +   Q       
Sbjct: 303 QTPVSGGASTASFQSALTTSMAQLENTMNNVVTAQAAVGGREQEVQALQTVTQTNTLQTS 362

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + ++     +      + +     ++ +     K+Q +S+  YL
Sbjct: 363 SNLADLTQTDMVKTIGKYTMTQAALQAAQQAFAKIQNISLFQYL 406


>gi|291613045|ref|YP_003523202.1| flagellar hook-associated protein 3 [Sideroxydans lithotrophicus
           ES-1]
 gi|291583157|gb|ADE10815.1| flagellar hook-associated protein 3 [Sideroxydans lithotrophicus
           ES-1]
          Length = 408

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 4/146 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG-QSSDYGLQLGARVTSILEWEQEKNHIAE 64
           ISTSSI+         L     +  +++ +G +  D  +         +E     +   +
Sbjct: 3   ISTSSIYNANISSLDTLQVQIAQTTQQISSGQRILDPSMD-PVGAARAIELTLSNSTNTQ 61

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT-DNNKFPINAGMLRDSYES 123
              +N+  T  LS S   L S+  ++Q      V    G +  +      A  L+     
Sbjct: 62  YGANNTAATNSLSLSDGILQSVTSLLQSAHDTAVTGAGGNSLSDTNRKALATDLQGRLND 121

Query: 124 FVTFANMTD-EGQYLFSGINSSEKPL 148
            +  AN TD  G YL+SG   S +P 
Sbjct: 122 LLGLANSTDGNGNYLYSGAQGSVQPF 147


>gi|187925753|ref|YP_001897395.1| flagellar hook-associated protein FlgL [Burkholderia phytofirmans
           PsJN]
 gi|187716947|gb|ACD18171.1| flagellar hook-associated protein 3 [Burkholderia phytofirmans
           PsJN]
          Length = 407

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 51/405 (12%), Positives = 124/405 (30%), Gaps = 54/405 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++  F        +      +L+ E+ +G S              ++       +++ 
Sbjct: 3   ISSTQYFNMNVATMSDQQAQLSQLYAEISSGVSLSTPSDNPLGAAQAVQLSSTATTLSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L      L S+  ++Q +   ++   +G  ++      A  L+      +
Sbjct: 63  TTNQGTALASLQQEDTTLGSVNTVLQTIHTLVLRAGDGSLNDGDRGSIATQLQSLRSQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTK----------------DSLAKKSFDQMLQG 168
           T AN TD +G YLF+G  SS +P                       DS   ++ D  +  
Sbjct: 123 TLANSTDPQGNYLFAGYQSSAQPYTTNSAGVVTYSGDTGTPGVQVTDSHVVQTGDNGIAI 182

Query: 169 FLEENSKSLLAGQHLEVSSM-NAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIK 227
           F         A       +          +    D  + D+Y + N+S+A+ + +     
Sbjct: 183 FGSVAPIGTSAVPAATTGNTGTGVISQVSLTNPTDPTNADKY-SINFSSATTYTVSQTDP 241

Query: 228 DTEGIDVS-----------------------------------ANVNMRGIRDIMFVAVI 252
            T  +  S                                      +M    ++  +   
Sbjct: 242 ATGAVTTSAPQAFTAGSAITLGGQSVSITGAPNAGDSFSVTPATQGSMDVFANLSQLITT 301

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
               +S   +  +        ++ ++  ++ ++  +A +G  E+ +   +   Q      
Sbjct: 302 LQTPVSGGASTASFQSALTTSMTQLENTMNNVVTAQAAVGGREQEVQALQTVTQTNTLQT 361

Query: 313 DTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            + ++     +      + +     ++ +     K+Q +S+  YL
Sbjct: 362 SSNLADLTQTDMVKTIGKYTMTQAALQAAQQAFAKIQNISLFQYL 406


>gi|300722674|ref|YP_003711964.1| flagellar hook-filament junction protein [Xenorhabdus nematophila
           ATCC 19061]
 gi|297629181|emb|CBJ89777.1| flagellar biosynthesis; hook-filament junction protein [Xenorhabdus
           nematophila ATCC 19061]
          Length = 322

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 120/353 (33%), Gaps = 43/353 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           +ST+ ++ +            +K  E++ +G+     SD  L      +  +   Q ++ 
Sbjct: 3   VSTNQLYTQKMNGVFSAQSKWMKSGEQLSSGRRVINPSDDPLA----ASQNIMVSQSESK 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   +       +S   +  SSM ++  ++   LV   + ++D ++       L    
Sbjct: 59  NQQFATARIFAKNAMSAQLSITSSMVEVTNNVFETLVAAADEQSDQDRESYAQQ-LDGFK 117

Query: 122 ESFVTFAN-MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +  +   N     G+Y+F+G  + + P         ++    ++ +   +++N   ++A 
Sbjct: 118 QQLLNLGNKTDGNGRYIFAGYKTDKPPFVADKNSGKVSYVGGEESITQKVDDNRSMIIAH 177

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              E           F+ Q  +   +           SD   +  +  +  ID++     
Sbjct: 178 TGREA----------FLSQPSNPIKEPN---------SDTPSESDVFAS--IDMAIKALK 216

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                            ++   + A   L  K    ++  L+      AVLG+  + + +
Sbjct: 217 TPY-----------SSATEEQKNEAME-LMNKANRGIRNSLNNFSSVEAVLGLQLQELEQ 264

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                  ++        + + V+     ++       ++ S+   T L+ +S+
Sbjct: 265 LDSLGSERSISNKVRSGELVDVDWTATISEYYQQQAALQASFKAFTDLKGMSL 317


>gi|297618068|ref|YP_003703227.1| flagellar hook-associated protein 3 [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145905|gb|ADI02662.1| flagellar hook-associated protein 3 [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 294

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQ 135
           L+T+ + L ++  I+Q      +  L G          A  +R   +     AN T   +
Sbjct: 73  LNTTDSALGNITDILQRANELTIQGLNGTNSEASREAIAKEVRQLADQIGVIANTTYGSK 132

Query: 136 YLFSGINSSEKPLNG 150
           ++F+G N +E P  G
Sbjct: 133 HVFAGTNVTEAPFTG 147


>gi|302390138|ref|YP_003825959.1| flagellar hook-associated protein 3 [Thermosediminibacter oceani
           DSM 16646]
 gi|302200766|gb|ADL08336.1| flagellar hook-associated protein 3 [Thermosediminibacter oceani
           DSM 16646]
          Length = 294

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 70/225 (31%), Gaps = 8/225 (3%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ S I E       +  +   K  + + +G+            T  +        + + 
Sbjct: 3   VTQSMITEAFIRNLSQNLRRLGKKEDMLASGKKVRLPSDDPVSATLAMRLRDTLLTVEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L +++  L++  +I+Q +    V          +  +    +       +
Sbjct: 63  TKNTEDAITWLKSTETALANTGEILQRIRELTVYAANDTLSAEEREMVLDEITQLKHQLL 122

Query: 126 TFANMTDEGQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
             AN +   +YLF+G ++ + P          K S+A         G       +++   
Sbjct: 123 QEANASHNKKYLFNGYHTDQAPFYIDAMDGKIKPSVATSETVDYNIGRSNSIQVNVMGND 182

Query: 182 HLEVSSMNAQQM-TDFIKQLEDKFSDDEYWANNWSNASDHNIKYR 225
                 +  + +  D +       S      +   NA D  +KYR
Sbjct: 183 VFTDIFLTVEDIEQDLLNNDSASLSGR---LDQLDNAIDTVLKYR 224



 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 8/148 (5%)

Query: 216 NASDHNIKYRIKDTEGID------VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVL 269
           +A D  IK  +  +E +D       S  VN+ G      + +   +     L +   +  
Sbjct: 148 DAMDGKIKPSVATSETVDYNIGRSNSIQVNVMGNDVFTDIFLTVEDIEQDLLNND--SAS 205

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
               L  +   +  +++ R+ +G     +   +  L+  N      +SK+  V+      
Sbjct: 206 LSGRLDQLDNAIDTVLKYRSQIGARINRLEATKTRLEYNNIDYTELLSKTEDVDVAKLIM 265

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
            L    N    S  +  ++ + +++++L
Sbjct: 266 DLKMEENVYRASLAVGARIIQPTLVDFL 293


>gi|67641546|ref|ZP_00440323.1| flagellar hook-associated protein 3 [Burkholderia mallei GB8 horse
           4]
 gi|238522497|gb|EEP85941.1| flagellar hook-associated protein 3 [Burkholderia mallei GB8 horse
           4]
          Length = 397

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 70/178 (39%), Gaps = 3/178 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++ ++     +  +      +L++++ +G S              ++       +A+ 
Sbjct: 3   ISSTQLYSLNVDMMNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + ++V   L T    L+S+  ++      L+   +G   ++     A  ++ S +  +
Sbjct: 63  TQNQTIVQTALQTEDTTLTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           T AN  D  G YLF+G   + +P +           + D   +     +++++  G +
Sbjct: 123 TLANTADGAGNYLFAGFQPTTQPFSNK--PGGGVTYAGDYGARAVQIADTRTVSQGDN 178


>gi|134297190|ref|YP_001120925.1| flagellar hook-associated protein FlgL [Burkholderia vietnamiensis
           G4]
 gi|134140347|gb|ABO56090.1| flagellar hook-associated protein 3 [Burkholderia vietnamiensis G4]
          Length = 413

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 55/409 (13%), Positives = 117/409 (28%), Gaps = 57/409 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++  F+       +      +L++++ +G S              ++       +++ 
Sbjct: 3   ISSAQFFQLNVSQMNDQQAQLSQLYQQIASGVSLQTPADNPVGAAQAVQLSMTSATLSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S     L      L S+  ++  +    V   +G   ++     A  L+   +  +
Sbjct: 63  TANQSTALASLQAEDQTLQSVSTVLTGVQTLTVRAGDGSLADSDRAALATQLQGYRDQLM 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGY----------------FTKDSLAKKSFDQMLQG 168
           T AN  D  G YLF+G+N+S  P                       DS +    D     
Sbjct: 123 TLANTNDGAGTYLFAGVNNSSAPFTSSPNGTVSYVGDSGTRQVQIGDSSSVAQGDTGAAV 182

Query: 169 FLEENSKSLLAGQHLEVSSM-------------NAQQMTDFIKQLEDKFSDDEYWANNWS 215
           F+   S   +     + ++              +A                   +    S
Sbjct: 183 FMSVQSLGSVPVPAADAANTGTGRITAVTVTSPSAATNGHHFAITFGGTPAAPTYTVTDS 242

Query: 216 NASDHNIK--------YRIKDTEGIDVSANVNMRGIRDIM-------------------F 248
           +A                I    G+ VS +                              
Sbjct: 243 SAKPPTTTPAQAYTAGASIALGGGMTVSVSGTPSAGDSFSVTPGPQATGGADIFSTLDSM 302

Query: 249 VAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNK 308
           +A + T      +   A +         V   +  +   +A +G  E+ +   +   Q  
Sbjct: 303 IAALKTPVTGNPVAAAALSNAMMTGSIKVGNTMRNVTTIQASVGGREQEVKAMQAVTQTA 362

Query: 309 NNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +    + ++   G    T  +Q   + N +  +     +LQ LS+  Y+
Sbjct: 363 SLQTTSNLTDLTGTNMVTTISQYLQVQNALTGAQKAYVQLQNLSLFQYV 411


>gi|242238976|ref|YP_002987157.1| flagellar hook-associated protein 3 [Dickeya dadantii Ech703]
 gi|242131033|gb|ACS85335.1| flagellar hook-associated protein 3 [Dickeya dadantii Ech703]
          Length = 312

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/310 (11%), Positives = 89/310 (28%), Gaps = 55/310 (17%)

Query: 50  TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNK 109
              +   Q +   A+   S S  +  L      L  +  ++Q++   +V   +    +  
Sbjct: 47  AQAVILAQTQASSAQYATSRSSASNSLKLETTTLDQVTDVIQNIQTLIVEAGDTTYSDTD 106

Query: 110 FPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQML 166
                  L+   +  +  AN TD  G Y+F+G  +   P +   T D         D  +
Sbjct: 107 RQSLKTELQGYKDQLLGLANSTDSNGNYIFAGYKTDTAPFSEDTTSDPSVISYVGSDTAI 166

Query: 167 QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI 226
              ++ +    +     +V       + + +  L+                        I
Sbjct: 167 SQKVDASRTMTVGDTGDDVFGDIFTHINNVLDALD------------------------I 202

Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIE 286
              +                             N              + +   L G++ 
Sbjct: 203 SLDDT-------------------------NGDNTNMDTYTAALGTATTGMSDSLDGVLT 237

Query: 287 QRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQ---HTAHAQLSTLINKIEMSYM 343
            +A +G     ++       +K+ I    ++   G +    +   A+ +     ++ +Y 
Sbjct: 238 IQASVGSKINELDTLDSAGDSKDLIYSDLMTSLKGADATDWYDIIAENTLRKATLQAAYT 297

Query: 344 ITTKLQKLSI 353
             + +Q LS+
Sbjct: 298 AFSSMQSLSL 307


>gi|119715017|ref|YP_921982.1| flagellar hook-associated protein 3 [Nocardioides sp. JS614]
 gi|119535678|gb|ABL80295.1| flagellar hook-associated protein 3 [Nocardioides sp. JS614]
          Length = 305

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/351 (11%), Positives = 94/351 (26%), Gaps = 54/351 (15%)

Query: 8   TSSIFERMNILTKE-LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           T  +  R  +   +        + E++ TG+  +         TS +      +   + +
Sbjct: 7   TQGMMSRQALTGMQAGLNRLANVQEQLSTGRVINRPSDDPTGATSAMRLRSSVSDQKQYV 66

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            +       L+   + LSS+      +     + L+G    +        L    +   +
Sbjct: 67  RNADNGLGWLNQIDSTLSSITD---QVRRAHEVALQGANTGSLGAEAREALAIEIDQIRS 123

Query: 127 FANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS 186
               T    YL       E+P+ G  T  S A    +  + G +     +L  G+   V 
Sbjct: 124 GLVSTANATYL-------ERPVFGGVTAGSAAYA--EDPVTGAVTYLPGALTTGEG--VV 172

Query: 187 SMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI 246
            +        +          +                                      
Sbjct: 173 RVVGAGAKVRVDVEGPDVFGPDG------------------------------------- 195

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
              +V                         +      +   +A +G+  K + + R    
Sbjct: 196 --DSVFDHLTALAAALRAGDAAAITASAGILDADTRKVTNVQADIGVRTKRVEQARTAAN 253

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +  + + +S+    +   A   L       + +   T ++ + S+L++L
Sbjct: 254 DADLRLTSSLSEVENTDMVKATVDLQLQEVAYQAALSATARVMQPSLLDFL 304


>gi|304413324|ref|ZP_07394797.1| flagellar hook-filament junction protein [Candidatus Regiella
           insecticola LSR1]
 gi|304284167|gb|EFL92560.1| flagellar hook-filament junction protein [Candidatus Regiella
           insecticola LSR1]
          Length = 307

 Score = 45.5 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 52/152 (34%), Gaps = 1/152 (0%)

Query: 11  IFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNS 70
           I   M      + K+  +  +++   +  +   +           E+E   +      N 
Sbjct: 8   IENGMRNPIAVIQKEINRTSKQIENEKQVNCPSENPIASAYNTLIEREIKQLGSYKKINQ 67

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM 130
            +T   S+ +  + +++  +  +   L+++           +    L  + E  ++  N 
Sbjct: 68  HLTSSFSSQKNSMGNIEDTLNRIKDILLLVANDVHSTEDRRVFGQKLAGNIERIMSSLNA 127

Query: 131 -TDEGQYLFSGINSSEKPLNGYFTKDSLAKKS 161
             +E  YLF+G  S+E+ +       S     
Sbjct: 128 QNEERNYLFAGTKSNEQAVKESSGSYSDNGNQ 159


>gi|62006048|dbj|BAC97967.3| mKIAA0533 protein [Mus musculus]
          Length = 1702

 Score = 45.5 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 93/315 (29%), Gaps = 51/315 (16%)

Query: 44  QLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEG 103
           QL    + +++  +  N           +  R   +Q  L    +  Q++      L   
Sbjct: 465 QLAQYESGLMDLREALNQAVNTTREAEELNSR---NQERLKEALQWKQELSQDNATLKAT 521

Query: 104 KTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFD 163
               +    +   L    +            ++L + ++ +  PL       S A    D
Sbjct: 522 LQAASLILGHVSELLQGIDQAKEDL------EHLAASLDGAWTPLLKRMQAFSPASSKVD 575

Query: 164 QMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK 223
            +          + LA     +  +       FI++  +            SNA    + 
Sbjct: 576 LVEAAEAHAQKLNQLAINLSGI--ILGINQDRFIQRAVEA-----------SNAYSSIL- 621

Query: 224 YRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSG 283
                 + +  + +   + +R       +  +   + L  GAR +L           L  
Sbjct: 622 ------QAVQAAEDAAGQALRQASRTWEMVVQ---RGLAAGARQLLAN------SSALEE 666

Query: 284 -IIEQRAVLGISEKNINEERVFLQ---NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIE 339
            I+  +  LG+++  +    + L     + N +   I +        A   + T      
Sbjct: 667 TILGHQGRLGLAQGRLQAAGIQLHNVWARKNQLAAQIQE------AQAMLAMDTSETSEH 720

Query: 340 MSYMITT---KLQKL 351
            S  ++    +++KL
Sbjct: 721 ASLALSANIGRVRKL 735


>gi|271500073|ref|YP_003333098.1| flagellar hook-associated protein 3 [Dickeya dadantii Ech586]
 gi|270343628|gb|ACZ76393.1| flagellar hook-associated protein 3 [Dickeya dadantii Ech586]
          Length = 309

 Score = 45.5 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/349 (10%), Positives = 111/349 (31%), Gaps = 48/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS IF++      +   +  K  +++ +              +  +   Q +    + 
Sbjct: 3   LSTSIIFQQSMQGVTDGLSNFSKTGQQLASNTRVVNPSDDPIAASKAVMVNQAQAQNDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     +++  + L+++   +      L+     K DN++  + A  LR      +
Sbjct: 63  SLARTFAENGMNSELSVLTNVATALTSASTTLLSADGTKNDNDR-QLIATSLRGLKAQLL 121

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N TD  G ++F G  +  +P        +++    +Q +   ++ +    +     +
Sbjct: 122 NLGNSTDGNGNFIFGGYKTDAQPFTT-NAAGTVSYVGGNQAISQQVDADRVMTVGHVGSD 180

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V +  +     F                                   +D + +     + 
Sbjct: 181 VFNNASGTADIF---------------------------------GALDTAISALETPLE 207

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                        + +    A          +++  L+ +   +A LG+  + ++     
Sbjct: 208 ------------GATDAVKAANTASINAASQSLKNALTNVSSAQATLGVQLQEVDTLNSI 255

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             +++N     +S  + ++     +        ++ SY   + +Q LS+
Sbjct: 256 GTDRSNANKQTLSDLVDIDMVATISTYMMQQQSLQASYKAFSDMQGLSL 304


>gi|258592551|emb|CBE68860.1| putative Flagellar hook-associated protein 3 [NC10 bacterium 'Dutch
           sediment']
          Length = 307

 Score = 45.5 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 36/88 (40%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+ ++  +  +    A +G     I + +   QN    +   +SK    +   A  
Sbjct: 219 VEASLTDLEAAIDQVRVVSADVGSRIGRIRDIQARSQNDLLALRGRLSKIEDTDVAEASI 278

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           +     N  + +    +++ ++++L++L
Sbjct: 279 EFQQAQNVYQAALAAASRVGQINLLDFL 306


>gi|222099584|ref|YP_002534152.1| Flagellar hook-associated protein 3 [Thermotoga neapolitana DSM
           4359]
 gi|221571974|gb|ACM22786.1| Flagellar hook-associated protein 3 [Thermotoga neapolitana DSM
           4359]
          Length = 304

 Score = 45.5 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 117/359 (32%), Gaps = 65/359 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG---QSSDYGLQLGARVTSILEWEQEKNHI 62
           ++   I +R+    +   K   KLH+++ +G   +       +  R + I+   +E    
Sbjct: 3   VTNKMISDRVLFNIQTSLKRIAKLHDQLSSGYRVRYPSDDAVVAKRASDIMTRRRELKQF 62

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
              +     V   ++   + L ++  I Q +   LV    G     +    A  +    +
Sbjct: 63  QRNIDH---VQTYVNAYDSALQTVSAISQRLRELLVRAANGTLSKAEREAIAEEIDRIRD 119

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPL----NGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
           + V  AN     +Y+FSG +   +P+    N +    S +              +    +
Sbjct: 120 NLVEIANTRIGNEYIFSGYDVFSEPVKYENNAWKIVTSPS-----------ANRSRSVSV 168

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
            G+ +E   + A ++             DE      SN  D  I   I +          
Sbjct: 169 LGRSIEY-GVTAGEIFKLGDGRNVFQVLDEVSGLLRSNLDDSAISSHISN---------- 217

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
                                         ++ K LS  ++ ++ +      +G   + I
Sbjct: 218 ------------------------------ISLKDLSFFEENITKVT---GKVGGVSRFI 244

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 +++ +     Y+SK    +       L+   + +E +    +++ + ++++++
Sbjct: 245 EMVEKRIEDLDYFFTEYLSKERDADITELVTDLAMQQSVLEAALKSASRVLQATLVDFV 303


>gi|153954737|ref|YP_001395502.1| FlgL [Clostridium kluyveri DSM 555]
 gi|219855201|ref|YP_002472323.1| hypothetical protein CKR_1858 [Clostridium kluyveri NBRC 12016]
 gi|146347595|gb|EDK34131.1| FlgL [Clostridium kluyveri DSM 555]
 gi|219568925|dbj|BAH06909.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 476

 Score = 45.5 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 70/236 (29%), Gaps = 11/236 (4%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   +        K+   +  K+  ++ + ++          V   ++        ++ 
Sbjct: 3   ITNKYLTNSFLSDMKKNLNNLNKIQGQLSSTKNFSKPSDDPLNVQKSMQLNTSITANSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       + T+   L  +  ++ ++   LV         +        +        
Sbjct: 63  GTNIKTALTWMDTTDVTLGQIGTVLGNIRDNLVKAGNVTYGQDDRDKINDEVNQQVSQLA 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N    G+Y+F G     KP+                 +   + +++ +     +   
Sbjct: 123 QLLNTNLGGEYIFGGTQGLSKPVTTETYS-----------ITRQVTDDNGNTTTDIYEGC 171

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
            S+        + +   +   D++  NNW+  S         D+ G D S +VN  
Sbjct: 172 ISLKYADKDGSVLEALPQVVSDDFNVNNWTGKSITFNVKGSSDSTGTDYSLSVNSS 227


>gi|258622495|ref|ZP_05717517.1| flagellar hook-associated protein 3 [Vibrio mimicus VM573]
 gi|258585195|gb|EEW09922.1| flagellar hook-associated protein 3 [Vibrio mimicus VM573]
          Length = 299

 Score = 45.5 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 116/355 (32%), Gaps = 65/355 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNH 61
           IS +   + M    +  N     + ++M TG    + SD  +        +L+ ++E + 
Sbjct: 3   ISDTQFSQMMLQSLQTNNAGLGNVMQQMSTGERLTKLSDDPMA----SVKLLKLDREGSA 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I +   + ++V   LS  + HL S+ + ++ M   ++    G   +         L+   
Sbjct: 59  IKQYQDNINMVKTTLSNQEVHLDSVSESLKSMRELVLWGANGTLTDEDRDGMISKLKSLR 118

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            S  +  N  D +G YLFSG  +    L+         K     +  G  ++   ++  G
Sbjct: 119 GSIASSFNARDEDGHYLFSGTKTDTAALD---------KTDAGYVFNGNNDKRVVTVAKG 169

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
             +E S+M A+ + D                        +N+  +I              
Sbjct: 170 VTVE-SNMTAKDILDLGGG--------------------NNVLNQID------------- 195

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                     V+  EF                 L  +   L+ ++     +G    N++ 
Sbjct: 196 ----------VLIKEFEKPGKN---FKAKVGSSLKAIDDSLANVLGALTEIGGRYNNLDL 242

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                      +D        ++   A  +LS  +  ++ +     K+  L++ +
Sbjct: 243 MESAHSENKLFVDKVTGDLSMLDYGEASVRLSNFMAALQATQASYVKINDLNLFD 297


>gi|148675372|gb|EDL07319.1| mCG6728, isoform CRA_a [Mus musculus]
          Length = 3635

 Score = 45.5 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/319 (11%), Positives = 96/319 (30%), Gaps = 49/319 (15%)

Query: 44   QLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEG 103
            QL    + +++  +  N           +  R   +Q  L    +  Q++      L   
Sbjct: 2292 QLAQYESGLMDLREALNQAVNTTREAEELNSR---NQERLKEALQWKQELSQDNATLKAT 2348

Query: 104  KTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFD 163
                +    +   L    +            ++L + ++ +  PL       S A    D
Sbjct: 2349 LQAASLILGHVSELLQGIDQAKEDL------EHLAASLDGAWTPLLKRMQAFSPASSKVD 2402

Query: 164  QMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK 223
             +          + LA     +  +       FI++  +            SNA    + 
Sbjct: 2403 LVEAAEAHAQKLNQLAINLSGI--ILGINQDRFIQRAVEA-----------SNAYSSIL- 2448

Query: 224  YRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSG 283
                  + +  + +   + +R       +  +   + L  GAR +L           L  
Sbjct: 2449 ------QAVQAAEDAAGQALRQASRTWEMVVQ---RGLAAGARQLLAN------SSALEE 2493

Query: 284  -IIEQRAVLGISEKNINEERVFLQ---NKNNIIDTYISK---SIGVEQHTAHAQL----S 332
             I+  +  LG+++  +    + L     + N +   I +    + ++      ++    +
Sbjct: 2494 TILGHQGRLGLAQGRLQAAGIQLHNVWARKNQLAAQIQEAQAMLAMDTSETSEKIAHAKA 2553

Query: 333  TLINKIEMSYMITTKLQKL 351
                 +  +  + ++LQ +
Sbjct: 2554 VAAEALSTATHVQSQLQGM 2572


>gi|148675373|gb|EDL07320.1| mCG6728, isoform CRA_b [Mus musculus]
          Length = 3714

 Score = 45.5 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/319 (11%), Positives = 96/319 (30%), Gaps = 49/319 (15%)

Query: 44   QLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEG 103
            QL    + +++  +  N           +  R   +Q  L    +  Q++      L   
Sbjct: 2371 QLAQYESGLMDLREALNQAVNTTREAEELNSR---NQERLKEALQWKQELSQDNATLKAT 2427

Query: 104  KTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFD 163
                +    +   L    +            ++L + ++ +  PL       S A    D
Sbjct: 2428 LQAASLILGHVSELLQGIDQAKEDL------EHLAASLDGAWTPLLKRMQAFSPASSKVD 2481

Query: 164  QMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK 223
             +          + LA     +  +       FI++  +            SNA    + 
Sbjct: 2482 LVEAAEAHAQKLNQLAINLSGI--ILGINQDRFIQRAVEA-----------SNAYSSIL- 2527

Query: 224  YRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSG 283
                  + +  + +   + +R       +  +   + L  GAR +L           L  
Sbjct: 2528 ------QAVQAAEDAAGQALRQASRTWEMVVQ---RGLAAGARQLLAN------SSALEE 2572

Query: 284  -IIEQRAVLGISEKNINEERVFLQ---NKNNIIDTYISK---SIGVEQHTAHAQL----S 332
             I+  +  LG+++  +    + L     + N +   I +    + ++      ++    +
Sbjct: 2573 TILGHQGRLGLAQGRLQAAGIQLHNVWARKNQLAAQIQEAQAMLAMDTSETSEKIAHAKA 2632

Query: 333  TLINKIEMSYMITTKLQKL 351
                 +  +  + ++LQ +
Sbjct: 2633 VAAEALSTATHVQSQLQGM 2651


>gi|124487155|ref|NP_001074640.1| laminin subunit alpha-5 precursor [Mus musculus]
 gi|123283981|emb|CAM16215.1| laminin, alpha 5 [Mus musculus]
          Length = 3718

 Score = 45.5 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/319 (11%), Positives = 96/319 (30%), Gaps = 49/319 (15%)

Query: 44   QLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEG 103
            QL    + +++  +  N           +  R   +Q  L    +  Q++      L   
Sbjct: 2375 QLAQYESGLMDLREALNQAVNTTREAEELNSR---NQERLKEALQWKQELSQDNATLKAT 2431

Query: 104  KTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFD 163
                +    +   L    +            ++L + ++ +  PL       S A    D
Sbjct: 2432 LQAASLILGHVSELLQGIDQAKEDL------EHLAASLDGAWTPLLKRMQAFSPASSKVD 2485

Query: 164  QMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK 223
             +          + LA     +  +       FI++  +            SNA    + 
Sbjct: 2486 LVEAAEAHAQKLNQLAINLSGI--ILGINQDRFIQRAVEA-----------SNAYSSIL- 2531

Query: 224  YRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSG 283
                  + +  + +   + +R       +  +   + L  GAR +L           L  
Sbjct: 2532 ------QAVQAAEDAAGQALRQASRTWEMVVQ---RGLAAGARQLLAN------SSALEE 2576

Query: 284  -IIEQRAVLGISEKNINEERVFLQ---NKNNIIDTYISK---SIGVEQHTAHAQL----S 332
             I+  +  LG+++  +    + L     + N +   I +    + ++      ++    +
Sbjct: 2577 TILGHQGRLGLAQGRLQAAGIQLHNVWARKNQLAAQIQEAQAMLAMDTSETSEKIAHAKA 2636

Query: 333  TLINKIEMSYMITTKLQKL 351
                 +  +  + ++LQ +
Sbjct: 2637 VAAEALSTATHVQSQLQGM 2655


>gi|229029419|ref|ZP_04185502.1| Flagellar hook-associated protein 3 [Bacillus cereus AH1271]
 gi|228731878|gb|EEL82777.1| Flagellar hook-associated protein 3 [Bacillus cereus AH1271]
          Length = 287

 Score = 45.5 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 66/204 (32%), Gaps = 2/204 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS ++  LS + K +       +  L G     +       +    +  V
Sbjct: 63  QKDIADSKNVLSQTETTLSGIVKSLTRADQLTIQALNGPNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             AN  ++G+YLF G ++ + P     T     K    ++  G+  +  ++        +
Sbjct: 123 YLANTKEQGRYLFGGDSAEKPPFADDGTYQGGEKDVMWKLNDGYEIKAFRNGENLLTPVI 182

Query: 186 SSMN--AQQMTDFIKQLEDKFSDD 207
            ++      M    ++    F  +
Sbjct: 183 QTLVKMKDAMQSGDQKALQPFLAE 206


>gi|291531968|emb|CBK97553.1| Flagellin and related hook-associated proteins [Eubacterium siraeum
           70/3]
          Length = 331

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/351 (10%), Positives = 103/351 (29%), Gaps = 25/351 (7%)

Query: 8   TSSIFERMNILTKELNKDSVKLHE-EMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           T S+  R  +       +     E ++ + +  +   +        L   +  ++  + L
Sbjct: 4   TQSMTNRRYMSQLNAALERKNASERKINSTKRYNRASEDPISAAKALRTRKAISNTNDYL 63

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            +     +  + + + L ++  I+ +++  +     G   +    I A  +    +  V 
Sbjct: 64  GNLETAEQIYNGADSVLMNVNDILDNIIEKVTYAANGTQHDEDEEILAQTVETFADEIVR 123

Query: 127 FANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS 186
             N     + +F G+N+       +  +++  KK+           +            +
Sbjct: 124 LFNTDIAERRIFGGVNNDT---TVFKIENAGGKKTITYNGVDINSIDDPDKFPYSESSFT 180

Query: 187 SMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI 246
            +    + D      D  S        ++ A       +I      D   + N       
Sbjct: 181 DIGTGMVIDPATGRVDPQSALP---VTFNGA-------KITGCGKDDEGDSKN------- 223

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
               +I     +         +     +  ++   + +    A +G  ++ I   +  L 
Sbjct: 224 ----IIQITLDAAQAVREGDKIKAMDYIDKLRAAQTSVSVAHADIGNKQEYIEYNKNRLT 279

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           N    +    +   G +         TL     +S    + +  +SI  ++
Sbjct: 280 NNMETLLEQQNNLEGTDMGAETTNWKTLDAIYNVSLQFASSVIPMSIFQFI 330


>gi|312115290|ref|YP_004012886.1| flagellin domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220419|gb|ADP71787.1| flagellin domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 321

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 90/336 (26%), Gaps = 37/336 (11%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++      +  +   K   K   E+ TG          +  +     + + + + 
Sbjct: 2   TSILTNNAANTALLNLQNTVKSLDKTQNEISTGLRVSTAADNASYYSIATSLKSDSSALT 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               S  +    L+T+ + +  +  ++  +   LV       D  K        +   ++
Sbjct: 62  TISDSLDVADSTLATATSAIDEISDVLSKIKDSLVTATTQGADRTKIQSEIATYQAQLKT 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A  +  GQ             N      S    +        L  +S   ++   +
Sbjct: 122 ISEAA--SLNGQ-------------NFLSVDSSATGYNDTASFVASLSRSSDGSVSYGTI 166

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             S            + +    D                            +        
Sbjct: 167 TFS------------KTDTALFDSNGDIGILDKVDSTTTGSFTNADGTTATATADGKSVF 214

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
              +               +GA   +       V+  +  +    +VLG ++  I  ++ 
Sbjct: 215 NLDISALT----------DEGADLAMINAYQKQVEAAIKSVTAASSVLGSTQSRIESQKD 264

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIE 339
           F+      +D  +S  +  + + A  +LS L  + E
Sbjct: 265 FVDTLKTSVDAGVSSLVDADMNEASTRLSALQVQQE 300


>gi|317482618|ref|ZP_07941632.1| YhgE/Pip domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316915864|gb|EFV37272.1| YhgE/Pip domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 909

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 73/265 (27%), Gaps = 12/265 (4%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
               K   A    + +        S   L+  Q   Q     LV  L   + + +    A
Sbjct: 228 LADAKQTTASLKQTVAAAQNASRQSGTLLAETQAGSQAFSTTLVGAL--DSSSAQLSGLA 285

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENS 174
             + ++  S     N            N+   PLN   T  S  K +  +   G    + 
Sbjct: 286 VHVNNAAGSITGSFNSAQNSVDTI--TNTLSAPLNATQTSISDLKDALTKAGIGKDTTDP 343

Query: 175 KSLLAGQHLEV--SSMNAQ--QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
                 + ++   S ++ Q  Q+  F        +  +    N S A  +     I    
Sbjct: 344 VGQNIWKQIDALDSLISKQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALN 403

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEF-LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
               S       +  +            + + T  + +    +      Q +  + + + 
Sbjct: 404 TARGSLT--GTVMPSLTSSLNSFAALNGTLDGTLTSLSGTLDQADGLFDQLVDTLNQTKT 461

Query: 290 VLGISEKNINE-ERVFLQNKNNIID 313
            +  ++ ++ +        + +I  
Sbjct: 462 TISSTQDSLRQVASDVATVRTDIAT 486


>gi|89100619|ref|ZP_01173477.1| flagellar hook-associated protein L [Bacillus sp. NRRL B-14911]
 gi|89084643|gb|EAR63786.1| flagellar hook-associated protein L [Bacillus sp. NRRL B-14911]
          Length = 276

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 37/84 (44%)

Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
           L  V + +  ++  RA +G  +  I      LQ +       +S +  V+      +++T
Sbjct: 192 LEKVDKYIDQMLAGRAKIGAKQNRIELMDDRLQQQEVFSTRILSDNEDVDMEKVIMEMTT 251

Query: 334 LINKIEMSYMITTKLQKLSILNYL 357
             +    +  I +++ + S++++L
Sbjct: 252 QESVHRAALSIGSRIIQPSLMDFL 275



 Score = 45.1 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 41/122 (33%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             KL +++ T +               + +  + N I +   +       + ++   +  
Sbjct: 12  LGKLQDQIATQKKFTKPSDDPVSAMMAMNYRTDLNRIEQYQRNIGEAKNWIDSTDDAMDK 71

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
               +Q +    V    G  + ++       ++   E  +        G+Y+F+G  ++ 
Sbjct: 72  GIMALQRIRELTVQASNGTLEGDQKKNIMEEIKQLKEHLIDIGETQVGGKYIFNGTQTNV 131

Query: 146 KP 147
           KP
Sbjct: 132 KP 133


>gi|94265699|ref|ZP_01289438.1| Flagellin-like:Flagellin hook IN [delta proteobacterium MLMS-1]
 gi|93453785|gb|EAT04157.1| Flagellin-like:Flagellin hook IN [delta proteobacterium MLMS-1]
          Length = 1004

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 54/139 (38%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++  SI+  +      LNKD  ++++++ +G+  D        + + L      + I + 
Sbjct: 3   VTMQSIYANIQTNLGNLNKDMNRINQQISSGKQMDKISDNPVNLVNALGLRTNISEIGQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       ++ S+  L+ M  +V       +    G          A  +++ +E  +
Sbjct: 63  QKNIKYGETVINASEDALTQMNDLVTRAKTLAIQQASGSMTPENRENAAQEVKNLWEQAI 122

Query: 126 TFANMTDEGQYLFSGINSS 144
             AN T   +Y+F G  + 
Sbjct: 123 ILANSTVNNKYIFGGFRTD 141



 Score = 42.0 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/95 (10%), Positives = 33/95 (34%)

Query: 263  DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322
               +    +K ++ +    + +  Q +  G     I  +     N        +S+    
Sbjct: 910  SQIQASALQKSIAELDTLHNELTNQISDFGARANRIEVQNNIYMNLKLATSENLSELEDT 969

Query: 323  EQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +   A  +L       + +    ++  ++S++++L
Sbjct: 970  DLVEAIMELKAKETAYQAALSSASRTMQMSLVDFL 1004


>gi|284989568|ref|YP_003408122.1| flagellar hook-associated protein 3 [Geodermatophilus obscurus DSM
           43160]
 gi|284062813|gb|ADB73751.1| flagellar hook-associated protein 3 [Geodermatophilus obscurus DSM
           43160]
          Length = 298

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+  ++ +   +          KL +++ +G+               L+  Q+++ + + 
Sbjct: 3   ITHRAVTQTALLGLNTNLSSVAKLQQQLTSGKLISAPSDSPTGTNKALQIRQDQSAVEQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVG-PLVILLEGKTDNNKFPINAGMLRDSYESF 124
             + S     L  +   L+     VQ +    +  + +G    +     A  +    ES 
Sbjct: 63  AKNISDGQSWLDATDTALNEAVAQVQRVRALTVQAMNDGAVSTSSQRAIAVEVAALRESL 122

Query: 125 VTFANMTDEGQYLFSGINSSEKP 147
           +  AN +   + LF G+      
Sbjct: 123 LGVANSSINDRALFGGVTQGSTA 145


>gi|157371200|ref|YP_001479189.1| flagellar hook-associated protein 3 [Serratia proteamaculans 568]
 gi|157322964|gb|ABV42061.1| flagellar hook-associated protein 3 [Serratia proteamaculans 568]
          Length = 319

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 119/350 (34%), Gaps = 40/350 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++      +     +K  +++ +G+            +  +   Q ++   + 
Sbjct: 3   MSTSMMYQQNMSGITDNQSLFMKAAQQLSSGKKVSNPSDDPLAASQAVMLAQSQSENTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +   + +S  +  L      + DM   L++   G   +N     A  L+   +  +
Sbjct: 63  ALARTFARQSVSMEETVLGGATSTIADM-KALIVNAGGTESDNDRDSLATQLQGLKDQLL 121

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+Y+F G  + + P        S++    ++ ++  ++ N    +      
Sbjct: 122 NQANSTDGNGRYMFGGFVNDKPPFVD--NGGSVSYAGGNKAVEQKVDANRTMTIGHTG-- 177

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
                          +    + +     + S    +  +        ID++       ++
Sbjct: 178 -------------DTVFMSLTSNPKPEPDGSAPVSNVFES-------IDIALKALKTPLK 217

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           D            + + T    N    K    +    + ++  RA LG ++    +    
Sbjct: 218 D------------ADDATKQQVNDALAKANRGLDNSYNKVLSVRAELG-NQLQEMDTLDS 264

Query: 305 LQNKNNIID-TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +    ++I+ T +S  +  +   + +        ++ SY     +Q +S+
Sbjct: 265 IGKDRDMINQTQMSALVDADLAESISSYFMQQAALQASYKTFGDMQGMSL 314


>gi|222147581|ref|YP_002548538.1| flagella associated protein [Agrobacterium vitis S4]
 gi|221734569|gb|ACM35532.1| flagella associated protein [Agrobacterium vitis S4]
          Length = 320

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 113/352 (32%), Gaps = 44/352 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T + T++         + ++ D       + +G   +      A  +       +   + 
Sbjct: 2   TSLMTNTAAISALSTLRSISDDMNSTQNRVSSGYKVENASDNAAYWSIATTMRSDNKALG 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L + +  T+   + S   +V D+   LV   E   D  K       L++   S
Sbjct: 62  AVEDAIGLGSAKTDTAYTGMKSAIDVVTDIKAKLVAAREPGVDKEKINKELVELKNQLSS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A  +  G+               +   +S +  +  +M+  F+  N        ++
Sbjct: 122 VAKSA--SFNGE--------------NWLYDNSDSTGTTQEMVGSFVRGN------DGNV 159

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            + ++        +   E     D       + A+          +  +  S   N    
Sbjct: 160 SIKTITFDTTNSILINDEA---GDGGLLTKGTVATYAYGTTTTTASYYLISSVAGN---- 212

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                     +      LT    +     M+S V + LS + +  + +G +   +  +  
Sbjct: 213 ---------TSSASEVTLTSSTTDDEIDGMVSAVDKMLSNMTDAASTIGATTSRLELQDT 263

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F++N ++ IDT + + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 264 FIKNLSDTIDTGVGRLVDADMNEESTKLKALQTQQQLG------IQSLSIAN 309


>gi|307318921|ref|ZP_07598352.1| flagellin domain protein [Sinorhizobium meliloti AK83]
 gi|17380477|sp|Q52942|FLAD2_RHIME RecName: Full=Flagellin D
 gi|12057228|gb|AAB81421.2| FlaC [Sinorhizobium meliloti]
 gi|306895335|gb|EFN26090.1| flagellin domain protein [Sinorhizobium meliloti AK83]
          Length = 395

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
               + ++T+ A+      ++  V + L  +I   + LG     I  +  F+    + ID
Sbjct: 288 ASIENIDITNAAQAANLDALIRGVDEALEDLISATSALGSISMRIGMQEEFVSKLTDSID 347

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           + I + +  + +    +L  L  + +++      +Q LSI N
Sbjct: 348 SGIGRLVDADMNEESTRLKALQTQQQLA------IQSLSIAN 383


>gi|289740943|gb|ADD19219.1| vacuolar sorting protein/ubiquitin receptor vPS23 [Glossina
           morsitans morsitans]
          Length = 416

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 29/216 (13%)

Query: 139 SGI-NSSEKPLNGYFTKDSLAKKSF-------DQMLQGFLEENSKSLLAGQHLEVSSMNA 190
            G  N++  P N Y    + A  +F            G+    + +   G     SS + 
Sbjct: 164 GGTQNAATGPGNSYLPYPTSAASAFPPYPPTASSSFSGYPPYPAANSAVG----ASSTSG 219

Query: 191 QQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVA 250
                F       FS    + N+  N+S+ +    I +        +     +R  +   
Sbjct: 220 A--VTF--PPYMNFSSVPGY-NSGYNSSNPSTTGTITEEHIKASLVSAVEDKLRRRVQEK 274

Query: 251 VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
           V   +   + L    + ++         +G + I      L   E  + +    L++K  
Sbjct: 275 VNQCQAEIEALNRTKQELV---------EGSAKIDAIILRLQREEMELEKNINILRDKEQ 325

Query: 311 IIDTYISKSIG---VEQHTAHAQLSTLINKIEMSYM 343
            ++  +        ++   A    + L  ++  +Y 
Sbjct: 326 ELEKNLESLENSEVIDPDEAVTTTAPLYKQLLNAYA 361


>gi|257885374|ref|ZP_05665027.1| regulatory protein [Enterococcus faecium 1,231,501]
 gi|257821230|gb|EEV48360.1| regulatory protein [Enterococcus faecium 1,231,501]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN------KFPINAGMLRDSYESF 124
           L   R+   Q  + + ++I+      +++LL    D           +   +++ + ++ 
Sbjct: 52  LTDIRMPK-QTGIDAAKEILAKFPKAILLLLTTFKDEEYIREAFSIGVKGYLIKQNLQAI 110

Query: 125 VTFANMTDEGQYLFSG--INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           +        GQ +F    I +  + +    T DS A  SF +     ++E +      + 
Sbjct: 111 IPSVKSAYNGQAVFGNEIIETFTQMMKNKSTIDSHAYASFSERELAIIKEVAAGKNNKEI 170

Query: 183 LEVSSMNAQQMTDFIKQLEDKF 204
            +   ++   + ++I QL +K 
Sbjct: 171 ADALYLSDGTVRNYISQLLEKL 192


>gi|319650642|ref|ZP_08004782.1| flagellar hook-associated protein L [Bacillus sp. 2_A_57_CT2]
 gi|317397823|gb|EFV78521.1| flagellar hook-associated protein L [Bacillus sp. 2_A_57_CT2]
          Length = 286

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 38/94 (40%)

Query: 264 GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
            + +     ML  + + +   +  RA +G  +  ++     L  +       +S +  ++
Sbjct: 192 ESNDPAVGDMLENIDKNIDNFLSARAQIGAKQNRVDLMEDRLSQQEVFSTRILSDNEDID 251

Query: 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              A  +L+T  +    +  +  ++ + ++ ++L
Sbjct: 252 MEKAIIELTTQESIHRAALSVGARIIQPTLTDFL 285


>gi|239621128|ref|ZP_04664159.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239516050|gb|EEQ55917.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 915

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 74/265 (27%), Gaps = 12/265 (4%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
               K   A    + +   K    S   L+  Q   Q     LV  L   T + +    A
Sbjct: 228 LADAKQTTASLKQTVAAAQKASRQSGTLLTETQAGSQAFSTTLVGAL--DTSSAQLSGLA 285

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENS 174
             + ++  S     N            N+   PLN   T  S  K +  +   G    + 
Sbjct: 286 VHVNNAAGSITGSFNSAQNSVDTI--TNTLSAPLNATQTSISDLKDALTKAGIGKDTTDP 343

Query: 175 KSLLAGQHLEV--SSMNAQ--QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
                 + ++   S ++ Q  Q+  F        +  +    N S A  +     I    
Sbjct: 344 VGQNIWKQIDALDSLISKQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALN 403

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEF-LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
               S       +  +            + + T  + +    +      Q +  + + + 
Sbjct: 404 TARGSLT--GTVMPSLTSSLNSFAALNGTLDGTLTSLSGTLDQADGLFDQLVDTLNQTKT 461

Query: 290 VLGISEKNINE-ERVFLQNKNNIID 313
            +  ++ ++ +        + +I  
Sbjct: 462 TISSTQDSLRQVASDVATVRTDIAT 486


>gi|222147582|ref|YP_002548539.1| flaB [Agrobacterium vitis S4]
 gi|221734570|gb|ACM35533.1| flaB [Agrobacterium vitis S4]
          Length = 320

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 106/352 (30%), Gaps = 44/352 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + ++++       + +G   D      A  +       +   ++
Sbjct: 2   TSIMTNTSAMAALQTLRGIDQNMETTQNRISSGYKVDSAKDNAAYWSIATTMRSDNKALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   +  T+   L S   ++  +   LV   E   D +K       L++   S
Sbjct: 62  TVQDALGLAASKADTAYTGLDSSIDVLSSIKSKLVAAREPGVDKDKINQEINELKNQLAS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N     L    T     K+      +      S + L     
Sbjct: 122 IAESAS--------FSGENW----LYNESTNPPTTKEMVASFNRASDGTVSVTTLKFNTS 169

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           E + ++ Q   + I       +               + +     T              
Sbjct: 170 ESTLIDTQNAENGILTRTTTATWAYGTTTTTGTYYLLDAESATPATGT------------ 217

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                            LT    N     M+S V + L  + +  + LG     I+ +  
Sbjct: 218 --------------EITLTTDMSNDDLDGMISAVDKMLQDLTDSASTLGAISSRIDSQDT 263

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F++N ++ ID  + + +  + +    ++  L  + ++       +Q LSI N
Sbjct: 264 FVKNLSDTIDKGVGRLVDADMNEESTKIKALQTQQQLG------IQALSIAN 309


>gi|213693294|ref|YP_002323880.1| ABC-2 type transporter [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524755|gb|ACJ53502.1| ABC-2 type transporter [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 918

 Score = 45.1 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 74/265 (27%), Gaps = 12/265 (4%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
               K   A    + +   K    S   L+  Q   Q     LV  L   T + +    A
Sbjct: 228 LADAKQTTASLKQTVAAAQKASRQSGTLLAETQAGSQAFSTTLVGAL--DTSSAQLSGLA 285

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENS 174
             + ++  S     N            N+   PLN   T  S  K +  +   G    + 
Sbjct: 286 VHVNNAAGSITGSFNSAQNSVDTI--TNTLSAPLNATQTSISDLKNALTKAGIGKDTTDP 343

Query: 175 KSLLAGQHLEV--SSMNAQ--QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
                 + ++   S ++ Q  Q+  F        +  +    N S A  +     I    
Sbjct: 344 AGQNIWKQIDALDSLISKQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALN 403

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEF-LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
               S       +  +            + + T  + +    +      Q +  + + + 
Sbjct: 404 TARGSLT--GTVMPSLTSSLNSFAALNGTLDGTLTSLSGTLDQADGLFDQLVDTLNQTKT 461

Query: 290 VLGISEKNINE-ERVFLQNKNNIID 313
            +  ++ ++ +        + +I  
Sbjct: 462 TISSTQDSLRQVASDVATVRTDIAT 486


>gi|163758024|ref|ZP_02165112.1| flagellin protein [Hoeflea phototrophica DFL-43]
 gi|162284313|gb|EDQ34596.1| flagellin protein [Hoeflea phototrophica DFL-43]
          Length = 321

 Score = 45.1 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 114/348 (32%), Gaps = 40/348 (11%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T++         + +N +       + +G   +      A  +       +   ++    
Sbjct: 2   TNTAAMAALQTLRTINSEMEMTQARVSSGYRVENAGDNAAYWSIATTMRSDNKAMSTVKD 61

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127
           +  L   ++  +   + S   ++ ++   LV   E   D  K       L++  +S    
Sbjct: 62  ALGLGAAKVDIAYTAMDSSIDVISEIKSKLVAAREPGVDKTKIDKEITELKNQLQSISES 121

Query: 128 ANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSS 187
           A+        FSG N        +    S A      ++ GF   +   L++   L++ +
Sbjct: 122 AS--------FSGEN--------WLNNTSTAAAGTKSVVGGF-NRDVNGLVSITTLDI-N 163

Query: 188 MNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM 247
           + +  M     +     + D       +NA D +             +       + D  
Sbjct: 164 VTSLTMIGAASENLGILTRDVD-----ANALDPDAT-----------TTTARNYYLIDTG 207

Query: 248 FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN 307
                     +  LT    +   + M+  V    S + +  + LG   K I+ +  F+ N
Sbjct: 208 ATTGTAASGAAIALTATTTDAEVEDMIRVVDSMFSDMTDAASNLGAISKRIDMQEDFVAN 267

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
             + ID+ I + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 268 LMDSIDSGIGRLVDADMNEESTRLKALQTQQQLG------IQSLSIAN 309


>gi|163758022|ref|ZP_02165110.1| flagellin protein [Hoeflea phototrophica DFL-43]
 gi|162284311|gb|EDQ34594.1| flagellin protein [Hoeflea phototrophica DFL-43]
          Length = 324

 Score = 45.1 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 113/352 (32%), Gaps = 40/352 (11%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T+S         + +N D       + +G          A  +       +   ++
Sbjct: 2   TSIMTNSSAMAALQTLRSINNDMESTQSRISSGYKVGSASDNSAYWSIATTMRSDNQALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++  +   + S  ++V ++   LV   E   D  K       L++   S
Sbjct: 62  TVQDALGLGAAKVDVAYTGMESAIEVVSEIKAKLVAAREPGVDKTKIDKEITELKNQLVS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N     LN   T  S  K        G    +S   +    L
Sbjct: 122 VAESAS--------FSGENW----LNNTTTAASGTKNVV-----GGFNRDSSGQVTITTL 164

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           +V++ +   +    + L     D +       NA D +             +       +
Sbjct: 165 DVNTTSTTLIGAGNESLGILTKDIDA------NALDPDAT-----------TTTARDYYL 207

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            D            + +LT    +   + M+  V    + + +  + LG   K I+ +  
Sbjct: 208 IDTGSTTGTQASGTAISLTSATTDAQVEDMIRAVDSMFTQMTDAASNLGAVNKRISMQED 267

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+ N  N ID  + + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 268 FVANLQNAIDKGVGRLVDADMNEESTRLKALQTQQQLG------IQALSIAN 313


>gi|157147095|ref|YP_001454414.1| hypothetical protein CKO_02872 [Citrobacter koseri ATCC BAA-895]
 gi|157084300|gb|ABV13978.1| hypothetical protein CKO_02872 [Citrobacter koseri ATCC BAA-895]
          Length = 294

 Score = 45.1 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 67/187 (35%), Gaps = 3/187 (1%)

Query: 26  SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS 85
             KL E+M T +  +         + +++  +E++ I +   + S ++  LS  ++++++
Sbjct: 12  ISKLMEQMSTQKRINVPSDDPVSASRLVQLNREQSAIKQYQSNISSLSGALSIQESNITA 71

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQYLFSGINSS 144
           +   +  +   L +                 L    +S V   N   + G YLFSG  + 
Sbjct: 72  LSNQMLAVGDKLKLANNSTLSQKDMAGYGMELSSMLDSLVATLNAKNENGSYLFSGTQTD 131

Query: 145 EKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ--QMTDFIKQLED 202
            + +     K        D   +  +          Q  +  S +    +M + +K L D
Sbjct: 132 SQTVTWDEAKGQYVYGGNDSSRETIVANGVSITENTQVAQAFSGSGNDLEMLNKLKALSD 191

Query: 203 KFSDDEY 209
           K  D   
Sbjct: 192 KMQDPNA 198


>gi|156973595|ref|YP_001444502.1| flagellar hook-associated protein FlgL [Vibrio harveyi ATCC
           BAA-1116]
 gi|156525189|gb|ABU70275.1| hypothetical protein VIBHAR_01298 [Vibrio harveyi ATCC BAA-1116]
          Length = 396

 Score = 45.1 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 133/401 (33%), Gaps = 50/401 (12%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQ 57
             T IS+   ++ +    +          E++ +G+     SD  L        I    Q
Sbjct: 1   MLTRISSFHNYQSVQNDLRRQENKVHHNQEQLASGKQLTKPSDDPLA----THYIQSIGQ 56

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
           ++  + + L +  LV  RL   +  +++ ++ V +     + ++ G             L
Sbjct: 57  QEEQLRQYLDAIVLVRNRLENQEVAVANAEQFVDESKRLSMEMINGAFSPEDRAAKKREL 116

Query: 118 RDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKS 176
            +   +F+  AN  D  G Y+F+G     +P     +  S+     D   +  +  N + 
Sbjct: 117 EEIANNFMALANSQDESGNYVFAGTKPKTQPF-FRDSDGSVVYTGDDYQRKMKIASNIEM 175

Query: 177 LLAGQHLEVSSMNAQQMTDF-------------IKQLEDKFSDDEYWANNWSNASDHNIK 223
            +     +V S  +    DF             + Q  D+   D  +   + + S+    
Sbjct: 176 GINYPGNKVFSEISNPFGDFEPQYGLQEGSELLLGQATDESKSDSNYKVTFVDMSNGKFG 235

Query: 224 YRIK-DTEGIDVSANVNMRGIRD--------------------------IMFVAVIGTEF 256
           Y+++ D   + V     + GI+                           I        ++
Sbjct: 236 YQLEKDGGIVQVDDYSPIDGIQYEGVNIQLKGQVSAGDSITLEPRQTFSIFDAFKETMQW 295

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
              +++D +      +M    Q     + + R  +G     ++ +    ++ N  +    
Sbjct: 296 SESSVSDASATAKLHQMTEEFQAAFVHMNKVRTDVGAKLSTLDIQEQNHEDFNLSLAKAK 355

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           S    ++   A  + S     ++ S     K + L++ NY+
Sbjct: 356 SNFEDLDYSKAVIEFSENSRALQASQQAFGKTKDLTLFNYI 396


>gi|299531279|ref|ZP_07044689.1| flagellar hook-associated protein 3 [Comamonas testosteroni S44]
 gi|298720686|gb|EFI61633.1| flagellar hook-associated protein 3 [Comamonas testosteroni S44]
          Length = 404

 Score = 44.7 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 58/413 (14%), Positives = 120/413 (29%), Gaps = 66/413 (15%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEW 55
           M    I T+++++             V L E+   G+       D      A        
Sbjct: 1   MSINRIGTANMYDSTINNLGSRQSSLVDLMEKTTAGKRVLRASDDPVAAAQAERARTRIT 60

Query: 56  EQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAG 115
             E +        + +        ++ L      +QD    L+    G  D         
Sbjct: 61  RSENDQRVLGAQRDVIAQG-----ESELGKAHGALQDFRDLLMQAGNGSYDQVARDALVK 115

Query: 116 MLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDS------------------ 156
            +    +  + +AN  D  G  +F G+ S + PL       S                  
Sbjct: 116 QMESLRDQVLGYANAKDSNGLPIFRGLGSPDTPLQSTPPGSSSQLNPGQNTGSDNGLPIS 175

Query: 157 ----------LAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSD 206
                             +              G   + S +     T  +   +D  + 
Sbjct: 176 LDGHAAWLNVPTGNGVFVVNGAASNSGKAWADVGSVTDPSKVTGDSYT--LVFTKDPTTG 233

Query: 207 DEYWANNWSNASDHN----------------------IKYRIKDTEGIDVSANVNMRGIR 244
           +  +  N S+A+  N                      IK    D +   +S +       
Sbjct: 234 EVSYEINSSSATVTNPVVPSTPYKEGQAITVGGQQISIKGTPADGDSFTMSPSTRTDIFS 293

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
            +     I T       +   +  L  + LS +  G++ +   R+  G   K  +     
Sbjct: 294 VLDQA--IATVKGGTGGSTALQQGL-GRALSELDSGMNRVQAMRSYAGDQLKRADGLESD 350

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++++    +   S++  ++  TA +Q+ T    ++ +     ++QKLS+ NY+
Sbjct: 351 MKDQALTQEGARSRAEDIDMITALSQVETQKVGLQAALQSYAQMQKLSLFNYI 403


>gi|296455086|ref|YP_003662230.1| ABC transporter [Bifidobacterium longum subsp. longum JDM301]
 gi|296184518|gb|ADH01400.1| ABC-2 type transporter [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 906

 Score = 44.7 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 73/265 (27%), Gaps = 12/265 (4%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
               K   A    + +        S   L+  Q   Q     LV  L   + + +    A
Sbjct: 228 LADAKQATASLKQTVAAAQNASRQSGTLLAETQAGSQAFSTTLVGAL--DSSSAQLSGLA 285

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENS 174
             + ++  S     N            N+   PLN   T  S  K +  +   G    + 
Sbjct: 286 VHVNNAAGSITGSFNSAQNSVDTI--TNTLSAPLNATQTSISDLKDALTKAGIGKDTTDP 343

Query: 175 KSLLAGQHLEV--SSMNAQ--QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
                 + ++   S ++ Q  Q+  F        +  +    N S A  +     I    
Sbjct: 344 VGQNIWKQIDALDSLISKQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALN 403

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEF-LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
               S       +  +            + + T  + +    +      Q +  + + + 
Sbjct: 404 TARGSLT--GTVMPSLTSSLNSFAALNGTLDGTLTSLSGTLDQADGLFDQLVDTLNQTKT 461

Query: 290 VLGISEKNINE-ERVFLQNKNNIID 313
            +  ++ ++ +        + +I  
Sbjct: 462 TISSTQDSLRQVASDVATVRTDIAT 486


>gi|229827761|ref|ZP_04453830.1| hypothetical protein GCWU000182_03153 [Abiotrophia defectiva ATCC
           49176]
 gi|229787960|gb|EEP24074.1| hypothetical protein GCWU000182_03153 [Abiotrophia defectiva ATCC
           49176]
          Length = 507

 Score = 44.7 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 80/278 (28%), Gaps = 17/278 (6%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++   +             + +K+ E+  TG+               L+       I + 
Sbjct: 3   VTNQIMTNNTLANINTNKLNLMKIEEQYETGKKIQRPSDDPVVAIRALKLRNNLTEINQY 62

Query: 66  LHSNSL-VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
              N       +  +++ L+ +  I   + G       G   +         ++   +  
Sbjct: 63  FKKNVPDAKSWIQVTESALTQVTDICTTLHGLADQGANGTLTSTDRTSIMKTMQQYRQQI 122

Query: 125 VTFANMTDEGQYLFSGINSSE--KPLNG-----YFTKDSLAKKSFDQMLQGFLEENSKSL 177
               N    G+Y+F+G  +      LN      Y   +   K +    L+ +   + K  
Sbjct: 123 YQEGNANYAGRYVFTGYKTDTSLTYLNDDKSKQYTITEEFDKTAIKTNLRTYGGYSVKDY 182

Query: 178 LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY------WANNWSNASDHNIKYRIKDTEG 231
             G   E S     Q   +++    K            + +   N  D +I    ++ E 
Sbjct: 183 EPGGANEFSEHPENQEISYLRLAYKKLDAAADGYPKLTYKDEDGNEGDIDITSTDENGET 242

Query: 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVL 269
           I  ++       +     A    +     L+D A   L
Sbjct: 243 ITSNSP---DAYKKPDSGAKYIADTGELILSDEAAEQL 277


>gi|76579450|gb|ABA48925.1| flagellar hook-associated protein 3 [Burkholderia pseudomallei
           1710b]
          Length = 396

 Score = 44.7 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 48/389 (12%), Positives = 109/389 (28%), Gaps = 54/389 (13%)

Query: 23  NKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH 82
                +L++++ +G S              ++       +A+   + ++V   L T    
Sbjct: 6   QAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLAQYTQNQTIVQTALQTEDTT 65

Query: 83  LSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGI 141
           L+S+  ++      L+   +G   ++     A  ++ S +  +T AN  D  G YLF+G 
Sbjct: 66  LTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLLTLANTADGAGNYLFAGF 125

Query: 142 NSSEKPLN-----------GYFT-----KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             + +P +            Y        D+      D     F+       L       
Sbjct: 126 QPTTQPFSNKPGGGVTYAGDYGARAVQIADTRTVSQGDNGANVFMSVPFLGSLPVPAAGA 185

Query: 186 SSMNAQQMTDF-IKQLEDKFSDDEYWANNWSNA-------SDHNIKYRIKDTEGIDVS-- 235
           S+     +    I    D  +  ++       A       +D+++            S  
Sbjct: 186 SNTGTGTIGAVSITNPSDPTNTHQFTITFGGTAAAPTYTVTDNSVTPPTTTAAQAYSSGQ 245

Query: 236 -----------------------ANVNMRGIRDIMFVAVIGTEF----LSKNLTDGARNV 268
                                        G      +  +         +      A   
Sbjct: 246 GINLGGQTVAVSGKPAVGDTFTVTPAPQAGTDVFATLDTVIAALKSPVGNSQTASTALTN 305

Query: 269 LTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
                 + +   ++ ++  +A +G   + +   +             +S         A 
Sbjct: 306 TMATASTKLMNTMTNVLTVQASVGGRLQEVKAMQAVTTTNTLQTTNSLSNLTDTNLPAAI 365

Query: 329 AQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +Q   L N +  +     ++Q LS+  YL
Sbjct: 366 SQFLQLQNSLSAAQKAFVQMQNLSLFQYL 394


>gi|69249446|ref|ZP_00604982.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|257880327|ref|ZP_05659980.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257894240|ref|ZP_05673893.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260562369|ref|ZP_05832883.1| regulatory protein [Enterococcus faecium C68]
 gi|293553074|ref|ZP_06673716.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|293559445|ref|ZP_06675983.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|293568332|ref|ZP_06679655.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|294618821|ref|ZP_06698347.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|314937987|ref|ZP_07845298.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314941587|ref|ZP_07848471.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948427|ref|ZP_07851815.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314951384|ref|ZP_07854436.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314995348|ref|ZP_07860454.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194157|gb|EAN08690.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|257814555|gb|EEV43313.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257830619|gb|EEV57226.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260073293|gb|EEW61634.1| regulatory protein [Enterococcus faecium C68]
 gi|291588941|gb|EFF20766.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|291594944|gb|EFF26295.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|291602783|gb|EFF32993.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|291606600|gb|EFF35996.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|313590441|gb|EFR69286.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313596442|gb|EFR75287.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313599607|gb|EFR78450.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642662|gb|EFS07242.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313645152|gb|EFS09732.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN------KFPINAGMLRDSYESF 124
           L   R+   Q  + + ++I+      +++LL    D           +   +++ + ++ 
Sbjct: 52  LTDIRMPK-QTGIDAAKEILAKFPKAILLLLTTFKDEEYIREAFSIGVKGYLIKQNLQAI 110

Query: 125 VTFANMTDEGQYLFSG--INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           +        GQ +F    I +  + +    T DS A  SF +     ++E +      + 
Sbjct: 111 IPSVKSAYNGQAVFGNEIIETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEI 170

Query: 183 LEVSSMNAQQMTDFIKQLEDKF 204
            +   ++   + ++I QL +K 
Sbjct: 171 ADALYLSDGTVRNYISQLLEKL 192


>gi|294501823|ref|YP_003565523.1| flagellar hook-associated protein FlgL [Bacillus megaterium QM
           B1551]
 gi|294351760|gb|ADE72089.1| flagellar hook-associated protein FlgL [Bacillus megaterium QM
           B1551]
          Length = 293

 Score = 44.7 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 66/187 (35%), Gaps = 4/187 (2%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
                      L  ++ TG+            T  + +    + + +   + +       
Sbjct: 15  QISNSYNKLETLQNQLSTGKKITRPSDDPIVATKGMAYRSNLSEVNQYKRNLTEAQSWFD 74

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
           +S++ L  +  I+Q     +V  L G  +++     A  +      ++   N    G Y+
Sbjct: 75  SSESGLEQVNSILQRTKELVVQGLNGTNESDDRQAIAREIEQLKLDYMQVGNTQVAGNYI 134

Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
           F+G+N    P+    ++++      +  L  F  E SK +    ++   ++  Q   D +
Sbjct: 135 FNGVNVGAAPI----SENASGMIESNINLDPFSVEVSKGIQLRVNIHPENIFGQGAFDLM 190

Query: 198 KQLEDKF 204
             ++  F
Sbjct: 191 NNVQTAF 197


>gi|168699686|ref|ZP_02731963.1| flagellar hook-associated protein FlgL [Gemmata obscuriglobus UQM
           2246]
          Length = 311

 Score = 44.7 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/335 (9%), Positives = 90/335 (26%), Gaps = 47/335 (14%)

Query: 23  NKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH 82
           + D  K ++++ +G   +      ++  ++ E +   N +     + S  T  L++  + 
Sbjct: 22  SADLAKFYDQVSSGVRIEKASDDPSKYPALTEAKAASNRLKSYAGTVSESTAVLNSGVST 81

Query: 83  LSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGIN 142
           L  +  I+       +   +  T        A  +       +   N   +G  LFSG  
Sbjct: 82  LQDVNDILVRAKNIALEANDASTQPESREALASEVDSLISRALITVNSRPDGSSLFSGTA 141

Query: 143 SSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLED 202
                             +F           +  +  G       +  +           
Sbjct: 142 LDT--------------NAFRVATTDAQGRPATVVYDGADQRARVVTGR----------- 176

Query: 203 KFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLT 262
                              +  R   +E           G      +  +  +    + +
Sbjct: 177 ----------------GTTVDTRYVGSEVFQ------QPGADVFASLIALRDDLRGTSGS 214

Query: 263 DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322
               N    + ++ +      I         +   ++     + +     D+ +    G 
Sbjct: 215 SATFNQALDQRITDLTAARDSISATIGEQAGNLATLSTLSNVISDSKLDFDSRVGDLEGT 274

Query: 323 EQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   A  ++      ++  Y +T +L    +L+++
Sbjct: 275 DYAEAVVKMQEASTALQAIYAVTAQLADPGLLDFI 309


>gi|94263280|ref|ZP_01287096.1| Flagellin-like:Flagellin hook IN [delta proteobacterium MLMS-1]
 gi|93456363|gb|EAT06487.1| Flagellin-like:Flagellin hook IN [delta proteobacterium MLMS-1]
          Length = 1321

 Score = 44.7 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 54/139 (38%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++  SI+  +      LNKD  ++++++ +G+  D        + + L      + I + 
Sbjct: 3   VTMQSIYANIQTNLGNLNKDMNRINQQISSGKQMDKISDNPVNLVNALGLRTNISEIGQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       ++ S+  L+ M  +V       +    G          A  +++ +E  +
Sbjct: 63  QKNIKYGETVINASEDALTQMNDLVTRAKTLAIQQASGSMTPENRENAAQEVKNLWEQAI 122

Query: 126 TFANMTDEGQYLFSGINSS 144
             AN T   +Y+F G  + 
Sbjct: 123 ILANSTVNNKYIFGGFRTD 141



 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/95 (11%), Positives = 33/95 (34%)

Query: 263  DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322
               +    +K ++ +    + I  Q +  G     I  +     N        +S+    
Sbjct: 1227 SQIQASALQKSIAELDTLHNEITNQVSDFGARANRIEVQNNIYMNLKLATSENLSELEDT 1286

Query: 323  EQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +   A  +L       + +    ++  ++S++++L
Sbjct: 1287 DLVEAIMELKAKETAYQAALSSASRSMQMSLVDFL 1321


>gi|328473446|gb|EGF44294.1| flagellar hook-associated protein FlgL [Vibrio parahaemolyticus
           10329]
          Length = 397

 Score = 44.7 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 11/168 (6%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQ 57
             T IS+   ++ +    +          E++ +G+     SD  L        I    Q
Sbjct: 1   MLTRISSFHNYQSVQNDLRRQENKIHHNQEQLASGKKLLKPSDDPLA----AHYIQNIGQ 56

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
           ++  + + L S  LV  RL   + ++++ +    +     + ++ G             L
Sbjct: 57  QQEQLKQYLSSIVLVRNRLENHEVNIANAESFADESKRLTMEMINGAFSAEDRQAKKREL 116

Query: 118 RDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
            +   +F+   N  D  G Y+F+G     +P   Y  KD   + + D 
Sbjct: 117 EEIANNFLNLVNAQDESGNYVFAGTKPKSQPF--YRDKDGSVQYAGDD 162


>gi|2599232|gb|AAC53430.1| laminin alpha 5 chain [Mus musculus]
          Length = 3635

 Score = 44.7 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/345 (10%), Positives = 101/345 (29%), Gaps = 53/345 (15%)

Query: 23   NKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE-RLHSNSLVTKRLSTSQA 81
             +   ++ E++ +    +    L            +        +     + + ++T++ 
Sbjct: 2265 QRLMARVQEQLTS--FWEENQSLAT------HIRDQLAQYESGLMDLREALNQAVNTTRE 2316

Query: 82   HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG----QYL 137
                  +  + +   L    E   DN                        D+     ++L
Sbjct: 2317 AEELNSRNQERVKEALQWKQELSQDNATLKATLQAASLILGHVSELLQGIDQAKEDLEHL 2376

Query: 138  FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
             + ++ +  PL       S A    D +          + LA     +  +       FI
Sbjct: 2377 AASLDGAWTPLLKRMQAFSPASSKVDLVEAAEAHAQKLNQLAINLSGI--ILGINQDRFI 2434

Query: 198  KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
            ++  +            SNA    +       + +  + +   + +R       +  +  
Sbjct: 2435 QRAVEA-----------SNAYSSIL-------QAVQAAEDAAGQALRQASRTWEMVVQ-- 2474

Query: 258  SKNLTDGARNVLTKKMLSTVQQGLSG-IIEQRAVLGISEKNINEERVFLQ---NKNNIID 313
             + L  GAR +L           L   I+  +  LG+++  +    + L     + N + 
Sbjct: 2475 -RGLAAGARQLLAN------SSALEETILGHQGRLGLAQGRLQAAGIQLHNVWARKNQLA 2527

Query: 314  TYISK---SIGVEQHTAHAQL----STLINKIEMSYMITTKLQKL 351
              I +    + ++      ++    +     +  +  + ++LQ +
Sbjct: 2528 AQIQEAQAMLAMDTSETSEKIAHAKAVAAEALSTATHVQSQLQGM 2572


>gi|23464758|ref|NP_695361.1| hypothetical protein BL0138 [Bifidobacterium longum NCC2705]
 gi|23325330|gb|AAN23997.1| hypothetical protein with similarity to pip phage infection protein
           of L. lactis [Bifidobacterium longum NCC2705]
          Length = 912

 Score = 44.7 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 73/257 (28%), Gaps = 12/257 (4%)

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
           A    + +   K    S   L+  Q   Q     LV  L   T + +    A  + ++  
Sbjct: 236 ASLKQTVAAAQKASRQSGTLLTETQAGSQAFSTTLVGAL--DTSSAQLSGLAVHVNNAAG 293

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           S     N            N+   PLN   T  S  K +  +   G    +       + 
Sbjct: 294 SITGSFNSAQNSVDTI--TNTLSAPLNATQTSISDLKDALTKAGIGKDTTDPVGQNIWKQ 351

Query: 183 LEV--SSMNAQ--QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
           ++   S ++ Q  Q+  F        +  +    N S A  +     I        S   
Sbjct: 352 IDALDSLISKQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALNTARGSLT- 410

Query: 239 NMRGIRDIMFVAVIGTEF-LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
               +  +            + + T  + +    +      Q +  + + +  +  ++ +
Sbjct: 411 -GTVMPSLTSSLNSFAALNGTLDGTLTSLSGTLDQADGLFDQLVDTLNQTKTTISSTQDS 469

Query: 298 INE-ERVFLQNKNNIID 313
           + +        + +I  
Sbjct: 470 LRQVASDVATVRTDIAT 486


>gi|1586274|prf||2203365A laminin alpha5
          Length = 3610

 Score = 44.7 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/345 (10%), Positives = 101/345 (29%), Gaps = 53/345 (15%)

Query: 23   NKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE-RLHSNSLVTKRLSTSQA 81
             +   ++ E++ +    +    L            +        +     + + ++T++ 
Sbjct: 2265 QRLMARVQEQLTS--FWEENQSLAT------HIRDQLAQYESGLMDLREALNQAVNTTRE 2316

Query: 82   HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG----QYL 137
                  +  + +   L    E   DN                        D+     ++L
Sbjct: 2317 AEELNSRNQERVKEALQWKQELSQDNATLKATLQAASLILGHVSELLQGIDQAKEDLEHL 2376

Query: 138  FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
             + ++ +  PL       S A    D +          + LA     +  +       FI
Sbjct: 2377 AASLDGAWTPLLKRMQAFSPASSKVDLVEAAEAHAQKLNQLAINLSGI--ILGINQDRFI 2434

Query: 198  KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
            ++  +            SNA    +       + +  + +   + +R       +  +  
Sbjct: 2435 QRAVEA-----------SNAYSSIL-------QAVQAAEDAAGQALRQASRTWEMVVQ-- 2474

Query: 258  SKNLTDGARNVLTKKMLSTVQQGLSG-IIEQRAVLGISEKNINEERVFLQ---NKNNIID 313
             + L  GAR +L           L   I+  +  LG+++  +    + L     + N + 
Sbjct: 2475 -RGLAAGARQLLAN------SSALEETILGHQGRLGLAQGRLQAAGIQLHNVWARKNQLA 2527

Query: 314  TYISK---SIGVEQHTAHAQL----STLINKIEMSYMITTKLQKL 351
              I +    + ++      ++    +     +  +  + ++LQ +
Sbjct: 2528 AQIQEAQAMLAMDTSETSEKIAHAKAVAAEALSTATHVQSQLQGM 2572


>gi|308050365|ref|YP_003913931.1| flagellar hook-associated protein 3 [Ferrimonas balearica DSM 9799]
 gi|307632555|gb|ADN76857.1| flagellar hook-associated protein 3 [Ferrimonas balearica DSM 9799]
          Length = 404

 Score = 44.3 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 5/146 (3%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSIL--EWEQEKNHIA 63
           I+T+  +         L  D+    + + +G+           V SI+    +Q+   I 
Sbjct: 3   IATNQFYNLNTTNLLRLQSDTNGTLQHLSSGKK--IHTAADDPVASIVLENLKQQSQQIN 60

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
           +   + +L   RLS  +  L   + ++ +    +V   +G   +      A  LR++ ++
Sbjct: 61  QYKANINLANNRLSQQEGRLGEYENLIMNSRDLIVQGNDGALSDENKGALAQDLRETRDA 120

Query: 124 FVTFANMTD-EGQYLFSGINSSEKPL 148
            +  AN  D  G +LF G  +  KP 
Sbjct: 121 ILALANNQDESGNFLFGGYQTGTKPF 146


>gi|28897560|ref|NP_797165.1| flagellar hook-associated protein FlgL [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260364618|ref|ZP_05777220.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus K5030]
 gi|260878277|ref|ZP_05890632.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           AN-5034]
 gi|260898107|ref|ZP_05906603.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           Peru-466]
 gi|260901961|ref|ZP_05910356.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           AQ4037]
 gi|551518|gb|AAD10270.1| hook-associated protein type 3 [Vibrio parahaemolyticus]
 gi|28805772|dbj|BAC59049.1| hook-associated protein type 3 FlgL [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086120|gb|EFO35815.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           Peru-466]
 gi|308090194|gb|EFO39889.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           AN-5034]
 gi|308106762|gb|EFO44302.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           AQ4037]
 gi|308115100|gb|EFO52640.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus K5030]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 11/168 (6%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQ 57
             T IS+   ++ +    +          E++ +G+     SD  L        I    Q
Sbjct: 1   MLTRISSFHNYQSVQNDLRRQENKIHHNQEQLASGKKLLKPSDDPLA----AHYIQNIGQ 56

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
           ++  + + L S  LV  RL   + ++++ +    +     + ++ G             L
Sbjct: 57  QQEQLKQYLSSIVLVRNRLENHEVNIANAESFADESKRLTMEMINGAFSAEDRQAKKREL 116

Query: 118 RDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
            +   +F+   N  D  G Y+F+G     +P   Y  KD   + + D 
Sbjct: 117 EEIANNFLNLVNAQDESGNYVFAGTKPKSQPF--YRDKDGSVQYAGDD 162


>gi|17865768|sp|Q61001|LAMA5_MOUSE RecName: Full=Laminin subunit alpha-5; AltName: Full=Laminin-10
            subunit alpha; AltName: Full=Laminin-11 subunit alpha;
            AltName: Full=Laminin-15 subunit alpha; Flags: Precursor
          Length = 3718

 Score = 44.3 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/345 (10%), Positives = 101/345 (29%), Gaps = 53/345 (15%)

Query: 23   NKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE-RLHSNSLVTKRLSTSQA 81
             +   ++ E++ +    +    L            +        +     + + ++T++ 
Sbjct: 2348 QRLMARVQEQLTS--FWEENQSLAT------HIRDQLAQYESGLMDLREALNQAVNTTRE 2399

Query: 82   HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG----QYL 137
                  +  + +   L    E   DN                        D+     ++L
Sbjct: 2400 AEELNSRNQERVKEALQWKQELSQDNATLKATLQAASLILGHVSELLQGIDQAKEDLEHL 2459

Query: 138  FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
             + ++ +  PL       S A    D +          + LA     +  +       FI
Sbjct: 2460 AASLDGAWTPLLKRMQAFSPASSKVDLVEAAEAHAQKLNQLAINLSGI--ILGINQDRFI 2517

Query: 198  KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
            ++  +            SNA    +       + +  + +   + +R       +  +  
Sbjct: 2518 QRAVEA-----------SNAYSSIL-------QAVQAAEDAAGQALRQASRTWEMVVQ-- 2557

Query: 258  SKNLTDGARNVLTKKMLSTVQQGLSG-IIEQRAVLGISEKNINEERVFLQ---NKNNIID 313
             + L  GAR +L           L   I+  +  LG+++  +    + L     + N + 
Sbjct: 2558 -RGLAAGARQLLAN------SSALEETILGHQGRLGLAQGRLQAAGIQLHNVWARKNQLA 2610

Query: 314  TYISK---SIGVEQHTAHAQL----STLINKIEMSYMITTKLQKL 351
              I +    + ++      ++    +     +  +  + ++LQ +
Sbjct: 2611 AQIQEAQAMLAMDTSETSEKIAHAKAVAAEALSTATHVQSQLQGM 2655


>gi|322692049|ref|YP_004221619.1| hypothetical protein BLLJ_1863 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456905|dbj|BAJ67527.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 883

 Score = 44.3 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 73/265 (27%), Gaps = 12/265 (4%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
               K   A    + +        S   L+  Q   Q     LV  L   + + +    A
Sbjct: 199 LADAKQTTASLKQTVAAAQNASRQSGTLLAETQAGSQAFSTTLVGAL--DSSSAQLSGLA 256

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENS 174
             + ++  S     N            N+   PLN   T  S  K +  +   G    + 
Sbjct: 257 VHVNNAAGSITGSFNSAQNSVDTI--TNTLSAPLNATQTSISDLKDALTKAGIGKDTTDP 314

Query: 175 KSLLAGQHLEV--SSMNAQ--QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
                 + ++   S ++ Q  Q+  F        +  +    N S A  +     I    
Sbjct: 315 VGQNIWKQIDALDSLISKQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALN 374

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEF-LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
               S       +  +            + + T  + +    +      Q +  + + + 
Sbjct: 375 TARGSLT--GTVMPSLTSSLNSFAALNGTLDGTLTSLSGTLDQADGLFDQLVDTLNQTKT 432

Query: 290 VLGISEKNINE-ERVFLQNKNNIID 313
            +  ++ ++ +        + +I  
Sbjct: 433 TISSTQDSLRQVASDVATVRTDIAT 457


>gi|187478192|ref|YP_786216.1| flagellar hook-associated protein 3 [Bordetella avium 197N]
 gi|115422778|emb|CAJ49306.1| flagellar hook-associated protein 3 [Bordetella avium 197N]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS I++              +L E++ +G+            +  +   Q  +     
Sbjct: 3   LSTSMIYQNGLNGILNQEAALSRLQEQLASGKRVLTPSDDPLAASLAVNVAQTASMNKNY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + + + L   +  LSS    +QD++  +V    G   +      + +L+ + +  +
Sbjct: 63  SANRATLKQSLGAEENALSSAVTTLQDVMKRVVEAGNGTMSDADRQTLSNVLKGARDQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
           + AN TD  GQYLFSG   + +P 
Sbjct: 123 SLANSTDGNGQYLFSGYQGNTQPF 146


>gi|54307276|ref|YP_128296.1| flagellar hook-associated protein FlgL [Photobacterium profundum
           SS9]
 gi|46911696|emb|CAG18494.1| Hypothetical FlgL flagellar hook-associated protein [Photobacterium
           profundum SS9]
          Length = 304

 Score = 44.3 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 110/352 (31%), Gaps = 54/352 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ +   M    +       K   ++ +G+              ++  ++E+ +I++ 
Sbjct: 3   LSTAQLNTVMLTSMQSSTTGVNKSFMQLNSGEKMLKPSDDPLGSVQLMMLDREQANISQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN-AGMLRDSYESF 124
             + + +  +L  +++HL +    V  +   ++ +        +     A  L    +  
Sbjct: 63  QKNITNLEAQLGKTESHLDASNNAVLRVQELVISVSNASNSTVEGREAIATELESLLDQL 122

Query: 125 VTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
              AN     G Y+F+G  +  +P+              D     ++   +      +  
Sbjct: 123 ADTANSKNPNGDYIFAGTKTDTQPIT------------KDPATGKYVYNGNGDQRMVKVA 170

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           E  S+ A Q        ED F +     ++  NA +  I                     
Sbjct: 171 ESMSIPANQ------TAEDIFFNG---GSDIFNALNKTIT-------------------- 201

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                      +  +  +   +           +   L  I +    +G     +   + 
Sbjct: 202 -----------DLRNPAIEGASLTASVTAAQRDIDGTLKSINQVWTEVGGQRNALTMVQG 250

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
             ++   +    I     ++   A  +L++ +  ++ + M  +K+Q LS+  
Sbjct: 251 SHEDNKLVNSKLIGDVKDLDYSEAILELNSQMAALQATQMTYSKVQNLSLFK 302


>gi|283850814|ref|ZP_06368100.1| flagellar hook-associated protein 3 [Desulfovibrio sp. FW1012B]
 gi|283573737|gb|EFC21711.1| flagellar hook-associated protein 3 [Desulfovibrio sp. FW1012B]
          Length = 518

 Score = 44.3 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 3/171 (1%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
              ++L    + + + +   + +     L+ + + L+S+  ++  + G       G   +
Sbjct: 47  GAVTVLNTRADIDQLGQYKRNITTANGWLNQADSTLTSVSTLITTIKGYAEQGATGTITD 106

Query: 108 NKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ 167
                 A  +R  ++  ++ AN T  G  LF+G  +  +         S    +FD  L 
Sbjct: 107 ENRGEIASAVRQYFQQLISQANTTYSGNSLFAGQKTDTEAFTEGLGMTS-NDTAFDTALA 165

Query: 168 GFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNAS 218
            +   N    + G       +     T      E      + W     +A+
Sbjct: 166 AWP--NPGYTVEGDTDSTVLVQFTDTTASPPAFEYTADGGQTWTAGTYSAT 214


>gi|195107645|ref|XP_001998419.1| GI23639 [Drosophila mojavensis]
 gi|193915013|gb|EDW13880.1| GI23639 [Drosophila mojavensis]
          Length = 2701

 Score = 44.3 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 52/191 (27%), Gaps = 27/191 (14%)

Query: 107  NNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPL---NGYFTKDSLAKKSFD 163
            +N    N+     +     T  +    G ++F   NS  KP      +F   +   +  +
Sbjct: 2303 SNAVSANSTTASAASSKLNTKQSADVGGGFVFG--NSD-KPFAQSTSWFGGSTGKAQQSN 2359

Query: 164  QMLQGFLEEN-----SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNAS 218
             +  GF   +       + + G   + ++ +      F          +    N  SN S
Sbjct: 2360 SIFGGFSGSDNKINNQTTSIFGGQPQAANQSETPKLTF------SPFGENNLTNTSSNVS 2413

Query: 219  DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTD--GARNVLTKKMLST 276
                   I  +               ++     +    +  N       +  +    + T
Sbjct: 2414 SGVTFGSIAGSSVTPS--------FGNLAKDKTMSFADMINNQNQIKDNKENIAAASIGT 2465

Query: 277  VQQGLSGIIEQ 287
                 S I +Q
Sbjct: 2466 KAVVASTIADQ 2476


>gi|33596146|ref|NP_883789.1| flagellar hook-associated protein FlgL [Bordetella parapertussis
           12822]
 gi|33601548|ref|NP_889108.1| flagellar hook-associated protein FlgL [Bordetella bronchiseptica
           RB50]
 gi|33573149|emb|CAE36797.1| flagellar hook-associated protein 3 [Bordetella parapertussis]
 gi|33575984|emb|CAE33063.1| flagellar hook-associated protein 3 [Bordetella bronchiseptica
           RB50]
          Length = 510

 Score = 44.3 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ I++              +L E++ +G+               +   Q  +  +  
Sbjct: 3   LSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +     + L      L S+ K +Q+M+  +V    G   +         L+ + E  V
Sbjct: 63  DANRKQAEQALGAQTNTLQSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFD 163
             AN TD  GQYLFSG     +P   Y    +  K +++
Sbjct: 123 GLANATDGNGQYLFSGYKGFTQP---YSFDAATGKVTYN 158


>gi|149189843|ref|ZP_01868123.1| flagellar hook-associated protein L [Vibrio shilonii AK1]
 gi|148836329|gb|EDL53286.1| flagellar hook-associated protein L [Vibrio shilonii AK1]
          Length = 299

 Score = 44.3 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 110/355 (30%), Gaps = 65/355 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNH 61
           IS +   + M    +  N    K+ ++M TG    + SD  +        +L  ++E + 
Sbjct: 3   ISDTQFSQMMLQSLQTNNAGLGKVLQQMATGDRLTKLSDDPMA----SIQLLNLDREGSA 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I +   + + V   LS+ + +L S+ + ++ M   ++    G   +         L    
Sbjct: 59  INQYQRNIANVKTTLSSQEVYLDSVNESLKSMRELVLWGSNGTLTDEDRDGMITELESLR 118

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +S  +  N  DE G YLFSG  +    L+     +S A    D                 
Sbjct: 119 DSIESSFNAQDEEGHYLFSGTKTDTPALS-----NSGAGYVVD--------------GNS 159

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
               V+      M   +   +                   N+  +I              
Sbjct: 160 DKRVVTVAKGVTMESNMTAKDILELGGGN-----------NVLNQID------------- 195

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                      +  EF + +    A        L+ +   L  ++     +G    N++ 
Sbjct: 196 ----------ALIVEFKNPSPNFQAE---VDASLNAIDDTLGNVLGAMTEIGGRHNNLDL 242

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                      +D   S    ++   A  +LS  +  ++ +     K+  LS+ +
Sbjct: 243 MDGAHGENKLFVDKVTSDISALDYGEASVRLSNYMAALQATQASYVKINDLSLFD 297


>gi|213645995|ref|ZP_03376048.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 240

 Score = 44.3 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 82/274 (29%), Gaps = 40/274 (14%)

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFS 139
           + LS +   +Q     +V    G   ++     A  L+   +  +  AN TD  G+Y+F+
Sbjct: 1   SVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFA 60

Query: 140 GINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQ 199
           G  +   P +         +KS  Q             +      V      Q+ + I  
Sbjct: 61  GYKTEAAPFDQATGGYHGGEKSVTQ------------QVDSARTMVIGHTGAQIFNSITS 108

Query: 200 LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSK 259
                 D      N     D  I                           A + T     
Sbjct: 109 NAVPEPDGSDSEKNLFVMLDTAI---------------------------AALKTPVEGN 141

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
           ++          K    ++  L+ ++  RA LG     ++       ++       +S  
Sbjct: 142 DVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMSNL 201

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           + V+ ++  +        ++ SY   T +Q +S+
Sbjct: 202 VDVDWNSVISSYVMQQAALQASYKTFTDMQGMSL 235


>gi|148976401|ref|ZP_01813107.1| flagellar hook-associated protein L [Vibrionales bacterium SWAT-3]
 gi|145964224|gb|EDK29480.1| flagellar hook-associated protein L [Vibrionales bacterium SWAT-3]
          Length = 396

 Score = 44.3 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 45/396 (11%), Positives = 120/396 (30%), Gaps = 48/396 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        +    Q+   
Sbjct: 5   ISSFHNYQSVQNDLRRQENKVHHNQAQLASGKKLQSPSDDPLA----THYLQNIGQQSEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + + + + +LV  RL   +  +++ +    +    ++ ++ G             +++  
Sbjct: 61  LKQYVDAITLVRNRLEHHEVMIANSEGFADEAKRTVMEMINGALSPEDRLAKKREIQELA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+  AN  D  G Y F+G     +P             + Y                 
Sbjct: 121 NNFLYLANSQDESGNYTFAGTKPKSQPFFRDNEGTVTYQGDDYQRKMRVASSFEMAMNDP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYW---- 210
            S      D     +  +      +   L  ++ +A+  + +     D  +    +    
Sbjct: 181 GSKLFMEIDNPFGDYEPQYELEPASELLLGRATNSAEDGSTYKVTFVDMQTGKFAYQLEK 240

Query: 211 ------ANNWSNASD---HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
                 A ++  A+      +  + K       S  +  R    I        E +   +
Sbjct: 241 DGAVVAAEDFDPATGIVYEGLNIQFKGQVTKGDSITLEPRETFSIFDTFKEAAEQVENPV 300

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
           +D +      +M          + + R  +G     ++ +    ++    +    S    
Sbjct: 301 SDASATAKLHQMTEEFHAAFIHLTKARTDVGARLSTLDIQEQQHEDFKLSLAKAKSNFED 360

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++   A  + +     ++ S     K + L++ NY+
Sbjct: 361 LDYSKAIIEFNENSRALQASQQAFGKTKDLTLFNYI 396


>gi|307731355|ref|YP_003908579.1| flagellar hook-associated protein 3 [Burkholderia sp. CCGE1003]
 gi|307585890|gb|ADN59288.1| flagellar hook-associated protein 3 [Burkholderia sp. CCGE1003]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 49/404 (12%), Positives = 126/404 (31%), Gaps = 52/404 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++  F        +      +L+ ++ +G S              ++       +A+ 
Sbjct: 3   ISSTQYFTMNVATMSDQQAQLSQLYAQISSGVSLSTPSDNPLGAAQAVQLSSTATSLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     L    + L S+  ++Q +   ++   +G  +N      A  L+      +
Sbjct: 63  TSNQNTALASLQLEDSTLGSVNNVLQSIHTLVLRAGDGSLNNGDRGSIATELQSLRSQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTK----------------DSLAKKSFDQMLQG 168
           T AN TD +G YLF+G  SS +P N                     +S   ++ D  +  
Sbjct: 123 TLANATDPQGNYLFAGYQSSAQPYNTNSAGVVTYSGDTGTPAVQITNSHVVQTGDNGISI 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
           F         A       +     ++          ++ + ++ N+++++ + +      
Sbjct: 183 FGSVAPIGTSAVPAATAGNTGTGVISTVSLNNPTDPTNADTYSINFTSSTTYTVSQTDPA 242

Query: 229 TEGIDVS--------------------------------ANVNMRGIRDIMFVAVIGTEF 256
           T  +  S                                       +     ++ + +  
Sbjct: 243 TGTVTTSGPQAFTAGSAITLGGQSVTISGAPNAGDSFSVTPATQGSMDVFANLSQLISTL 302

Query: 257 LSK---NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
            S      +  +        ++ ++  ++ ++  +A +G  ++ I   +   Q       
Sbjct: 303 QSPISGGASTASFQSALVTSMTQLENTMNNVVTAQATVGGRQQEIKALQTVTQTNTLQTA 362

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +S     +      + +   N ++ +     K+Q LS+  YL
Sbjct: 363 NDLSDLTQTDIVKTVGKYTLAQNALQAAQQAFVKIQNLSLFQYL 406


>gi|51894115|ref|YP_076806.1| flagellar-hook associated protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857804|dbj|BAD41962.1| flagellar-hook associated protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 293

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 57/171 (33%), Gaps = 2/171 (1%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
           L     +  + +  G++ +       RV   ++    K  +     + +   + LS ++ 
Sbjct: 19  LRAQYARAQKRVY-GRALERPSDDPQRVIEAIDLTGMKVKLERAQRAATDAKEWLSIAET 77

Query: 82  HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF-ANMTDEGQYLFSG 140
            L++M + +Q +   ++         +    N  +  +     +    N    G+Y+F+G
Sbjct: 78  SLTAMSEDLQAVYETMIQFGSPANQESTARENLALQIEGLRDAIKREMNTQHRGRYVFAG 137

Query: 141 INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
             +  +P     +     K S  ++ +        ++          + A 
Sbjct: 138 WAADTQPFEDDGSGGVEYKGSKHKIEREIAPGYKVAINIHGDELPYEIIAT 188


>gi|150395494|ref|YP_001325961.1| flagellin domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150027009|gb|ABR59126.1| flagellin domain protein [Sinorhizobium medicae WSM419]
          Length = 395

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
               + ++TD  +      ++  V + L  +I   + LG     I  +  F+    + ID
Sbjct: 288 ASVENIDITDATQAANLDALIRGVDEALEDLISATSALGSISMRIGMQEEFVSKLTDSID 347

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           + I + +  + +    +L  L  + +++      +Q LSI N
Sbjct: 348 SGIGRLVDADMNEESTRLKALQTQQQLA------IQSLSIAN 383


>gi|322690106|ref|YP_004209840.1| hypothetical protein BLIF_1928 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320461442|dbj|BAJ72062.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 877

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 73/265 (27%), Gaps = 12/265 (4%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
               K   A    + +        S   L+  Q   Q     LV  L   + + +    A
Sbjct: 199 LADAKQTTASLKQTVAAAQNASRQSGTLLAETQAGSQAFSTTLVGAL--DSSSAQLSGLA 256

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENS 174
             + ++  S     N            N+   PLN   T  S  K +  +   G    + 
Sbjct: 257 VHVNNAAGSITGSFNSAQNSVDTI--TNTLSAPLNATQTSISDLKDALTKAGIGKDTTDP 314

Query: 175 KSLLAGQHLEV--SSMNAQ--QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
                 + ++   S ++ Q  Q+  F        +  +    N S A  +     I    
Sbjct: 315 VGQNIWKQIDALDSLISKQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALN 374

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEF-LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
               S       +  +            + + T  + +    +      Q +  + + + 
Sbjct: 375 TARGSLT--GTVMPSLTSSLNSFAALNGTLDGTLTSLSGTLDQADGLFDQLVDTLNQTKT 432

Query: 290 VLGISEKNINE-ERVFLQNKNNIID 313
            +  ++ ++ +        + +I  
Sbjct: 433 TISSTQDSLRQVASDVATVRTDIAT 457


>gi|307131602|ref|YP_003883618.1| flagellar hook-associated protein flgL [Dickeya dadantii 3937]
 gi|306529131|gb|ADM99061.1| Flagellar hook-associated protein flgL [Dickeya dadantii 3937]
          Length = 309

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 107/349 (30%), Gaps = 48/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS IF++      +      K  +++ +              +  +   Q +    + 
Sbjct: 3   LSTSIIFQQSMQGVTDGLSAFSKTGQQLASNTRVLTPSDDPIAASKAVMVNQAQAQNEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     +++  + L+++   +      L+     K DN++  + A  LR      +
Sbjct: 63  ALARTFAENGMNSELSVLTNVATALTSASTTLLSADGTKNDNDR-QLIATSLRGLKSQLL 121

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G Y+F G  +  +P        +++    +Q +   ++ +    +     +
Sbjct: 122 NLANSTDGNGSYVFGGYKTDSQPFTT-NASGTVSYVGGNQAISQQVDADRVMTVGHIGSD 180

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V                    ++     +   A D  I       EG   +         
Sbjct: 181 V-------------------FNNAGGTADIFGALDSVISALETPLEGATTAV-------- 213

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                               A           ++  L+ +   +A LG+  + I+     
Sbjct: 214 ------------------KDANLATINAASQGLKNALTNVSSAQATLGVQLQEIDTLDSI 255

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             ++       +S  + ++     +        ++ SY   + +Q LS+
Sbjct: 256 GTDRTTANKQTLSDLVDIDMVATISTYMMQQQSLQASYKAFSDMQSLSL 304


>gi|227546877|ref|ZP_03976926.1| phage infection protein [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227212636|gb|EEI80522.1| phage infection protein [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 887

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 74/265 (27%), Gaps = 12/265 (4%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
               K   A    + +   K    S   L+  Q   Q     LV  L   T + +    A
Sbjct: 206 LADAKQTTASLKQTVAAAQKASRQSGTLLTETQAGSQAFSTTLVGAL--DTSSAQLSGLA 263

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENS 174
             + ++  S     N            N+   PLN   T  S  K +  +   G    + 
Sbjct: 264 VHVNNAAGSITGSFNSAQNSVDTI--TNTLSAPLNATQTSISDLKDALTKAGIGKDTTDP 321

Query: 175 KSLLAGQHLEV--SSMNAQ--QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
                 + ++   S ++ Q  Q+  F        +  +    N S A  +     I    
Sbjct: 322 VGQNIWKQIDALDSLISKQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALN 381

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEF-LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
               S       +  +            + + T  + +    +      Q +  + + + 
Sbjct: 382 TARGSLT--GTVMPSLTSSLNSFAALNGTLDGTLTSLSGTLDQADGLFDQLVDTLNQTKT 439

Query: 290 VLGISEKNINE-ERVFLQNKNNIID 313
            +  ++ ++ +        + +I  
Sbjct: 440 TISSTQDSLRQVASDVATVRTDIAT 464


>gi|296125660|ref|YP_003632912.1| flagellar hook-associated protein 3 [Brachyspira murdochii DSM
           12563]
 gi|296017476|gb|ADG70713.1| flagellar hook-associated protein 3 [Brachyspira murdochii DSM
           12563]
          Length = 417

 Score = 44.3 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 91/301 (30%), Gaps = 13/301 (4%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++  + F R     K    +       + TGQ   Y  Q      + + ++   + +   
Sbjct: 3   VTEQAQFNRTVSTIKRNYSEMEASQTRLSTGQRVQYPHQNVTATINSIYYKTRMSSVDRY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
            ++     +RLS +   +S++ + +       V         +     A  + +  E   
Sbjct: 63  QNNIVDGKERLSVAHDSMSAITQALNRARDLAVQGANSTYGADDRAKMAMEVEEMIERIY 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             +    +G+++FSG +    P   ++  D  A +S  + +    + N ++        +
Sbjct: 123 DISKTQSKGEFVFSGTSIKTAPFRAFYGHDEKAGRSIIKSVMYEGDGNPQNREIENGQLI 182

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASD---HNIKYRIKDTEGIDVSANVNMRG 242
           +         F     +  S  +  A   +   D    ++   IK  + I+         
Sbjct: 183 NVATPGNY-AFWGTDMEIISTTDASAYVAAENQDIMIDDMVINIKQGDNIETIVQ----- 236

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
            R       +               + T      + Q L+G    +  +G+    +    
Sbjct: 237 -RINDANGNVSASIGDLKGGQKVIQLKTGTPHKILLQDLAGGTVLQ-DIGLV--RVGAAN 292

Query: 303 V 303
            
Sbjct: 293 T 293



 Score = 39.7 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 34/102 (33%), Gaps = 1/102 (0%)

Query: 256 FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
                L D  R  +  + L  +   L  +   +A        ++      +++   I+  
Sbjct: 316 LRDAMLNDDVR-AIGSEALGYIDSSLDNVATVQANASSKVTRLDMGYTSFEDQKLAIEEA 374

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++K+  ++        +        S     +L   ++++YL
Sbjct: 375 LAKNENIDYAEEIVNFNMWQYAHNASLQTAGRLLGRTLMDYL 416


>gi|282599763|ref|ZP_05971779.2| flagellar hook-associated protein 3 [Providencia rustigianii DSM
           4541]
 gi|282567727|gb|EFB73262.1| flagellar hook-associated protein 3 [Providencia rustigianii DSM
           4541]
          Length = 305

 Score = 44.3 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 62/181 (34%), Gaps = 3/181 (1%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
                +    ++ +G+  +         +  +   Q ++   + + S       ++   +
Sbjct: 13  AQSRWMDAGSQLASGKRVNKPSDDPQASSQAVRINQSESRNQQYVTSRGFAKTGMTLQMS 72

Query: 82  HLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFS 139
            LS M ++   +   ++    +G   +      A  L    E  V   N TD  G+Y+F+
Sbjct: 73  ILSQMTEVTTQIDTTIIQASNQGALSDKDRTSLAEQLTGLKEQLVGLGNTTDGNGRYIFA 132

Query: 140 GINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQ 199
           G  S + P     T   +  K  D+ +   +  + +        +V   +   M +  K 
Sbjct: 133 GFKSDKAPF-EIDTNGEVLYKGGDKPIMQNVASDREMTTYFTGAQVFETDGAGMVNVFKA 191

Query: 200 L 200
           L
Sbjct: 192 L 192


>gi|260774945|ref|ZP_05883846.1| flagellar hook-associated protein FlgL [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609200|gb|EEX35358.1| flagellar hook-associated protein FlgL [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 49/401 (12%), Positives = 121/401 (30%), Gaps = 57/401 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G    ++SD  L        I    Q+K  
Sbjct: 5   ISSFHNYQSVQNDLRRQEAKVHHNQAQLASGKKLMRASDDPLA----THYIQNIGQQKEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + +   +  L   RL   +  +S+ ++   +    ++ ++ G             L +  
Sbjct: 61  LRQFTDAIVLSRNRLEHHEVIISNAEQYADEAKRTVMEMINGSLSPEDRIAKRRELLEIS 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+  +N+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 NNFLNLSNVQDESGNYIFAGTKPKNQPFFRDKDGDVVYAGDDYQRKMKISNSLEMPINDP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-SMNAQQMTDFIKQLEDKFSDDEYW--- 210
            S      D     F  +     ++   LE + + N    + +     D    +  +   
Sbjct: 181 GSKLFMEIDNPYGDFEPQYDLKGVSELLLERAINTNPDDQSTYKVTFVDMPDGNYGYQLE 240

Query: 211 -------ANNWSNA-----SDHNI--KYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF 256
                  A+N+  A      D  I  K +I   + I +                    + 
Sbjct: 241 RDGAVVKADNFDPAIGIKFEDVTIQVKGQITKGDAITLEPRKTYSIFDTFKQAM----KL 296

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
              +++D +      ++          + + R  +G     ++ +     +    +    
Sbjct: 297 AEGSVSDTSNTAELHQITQEFHAAFIHLNKARTDVGARLNTLDIQEEQHDDFKMTLAKSK 356

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           S    ++   A  + +     ++ S     K + L++ NY+
Sbjct: 357 SNFEDLDYADAIIEFNENSRALQASQQAFGKTKDLTLFNYI 397


>gi|156976148|ref|YP_001447054.1| flagellar hook-associated protein FlgL [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527742|gb|ABU72827.1| hypothetical protein VIBHAR_04919 [Vibrio harveyi ATCC BAA-1116]
          Length = 299

 Score = 44.3 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 116/355 (32%), Gaps = 65/355 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNH 61
           IS S   + M    +  N     + ++M TG    + SD  +        +L  E+E + 
Sbjct: 3   ISDSQFSQMMLQSLQTNNAGLGHVLQQMATGDRLTKLSDDPIA----SIKLLNLERENSA 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I +   + + +   LS  + HL S+ + ++ +   ++    G   +         L+   
Sbjct: 59  IGQYQSNIANLKTTLSAQETHLDSVNESLKSVRDLVLWGANGTLTDEDRSGMIIELKSYR 118

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +S  +  N  DE G YLFSG  +    ++                             AG
Sbjct: 119 DSIESSFNAQDEEGHYLFSGTQTDTPAVSN----------------------------AG 150

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V   + +++    K +                     +   +   E +++    N+
Sbjct: 151 GAYQVDGNSDKRVVTVAKGV--------------------TMDSNMTAKEILELGGGDNV 190

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                +  +  +  EF + +             LS +   L+ ++     +G    N++ 
Sbjct: 191 -----LNQIDALIAEFENPSPN---FQAEVDASLSAIDDTLANVLGAMTEIGGRHNNLDL 242

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                      +D   S    ++   A  +LS  +  ++ +     K+  L++ +
Sbjct: 243 MDSAHGENKLFVDKVTSDLSALDYGEASVRLSNYMAALQATQASYVKINDLNLFD 297


>gi|320459477|dbj|BAJ70098.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 896

 Score = 44.3 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 74/265 (27%), Gaps = 12/265 (4%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
               K   A    + +   K    S   L+  Q   Q     LV  L   T + +    A
Sbjct: 206 LADAKQTTASLKQTVAAAQKASRQSGTLLAETQAGSQAFSTTLVGAL--DTSSAQLSGLA 263

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENS 174
             + ++  S     N            N+   PLN   T  S  K +  +   G    + 
Sbjct: 264 VHVNNAAGSITGSFNSAQNSVDTI--TNTLSAPLNATQTSISDLKNALTKAGIGKDTTDP 321

Query: 175 KSLLAGQHLEV--SSMNAQ--QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
                 + ++   S ++ Q  Q+  F        +  +    N S A  +     I    
Sbjct: 322 AGQNIWKQIDALDSLISKQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALN 381

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEF-LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
               S       +  +            + + T  + +    +      Q +  + + + 
Sbjct: 382 TARGSLT--GTVMPSLTSSLNSFAALNGTLDGTLTSLSGTLDQADGLFDQLVDTLNQTKT 439

Query: 290 VLGISEKNINE-ERVFLQNKNNIID 313
            +  ++ ++ +        + +I  
Sbjct: 440 TISSTQDSLRQVASDVATVRTDIAT 464


>gi|311992307|gb|ADQ26727.1| flagellar hook-filament junction protein at filament [Aeromonas
           hydrophila]
          Length = 401

 Score = 44.3 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 49/399 (12%), Positives = 124/399 (31%), Gaps = 47/399 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+T+ +++R        N+     +E+++TG       +  + ++  L   +E +   + 
Sbjct: 2   ITTNMVYDRNISSLNGANERLSTAYEQLMTGNKFKTAGEDPSGMSQKLALTKEIDLFKQY 61

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + SL+   L   +  L+++   +      +        D  +    A  L    +   
Sbjct: 62  GVNGSLLENSLGHEETVLTALNTAMTSAQTLIQKSNNSAMDLEERKAIASELEGLQKQMF 121

Query: 126 TFANM-TDEGQYLFSGINSSEKPL-----NGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
              N    +G+Y+F G  S  +P        Y  +    +++        +  N      
Sbjct: 122 DLMNSKNSQGEYIFGGNQSKTQPFIKDASGNYVFQGDTGQRNIQVSPTVQIPANDSGFNL 181

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNW--SNASDHNIKYRIKDT----EGID 233
            + +     ++    +    + D+ + D ++ NN+  S AS+      I  T    E  D
Sbjct: 182 FEIVPTRRTSSAGSANIQVGVADQGNFDSFYRNNYDSSLASNQYTVNTIAGTPDTYEIRD 241

Query: 234 VS---------ANVNMRGIRDIMFVAVI--------------------------GTEFLS 258
                         N      +     +                           T    
Sbjct: 242 GGGALLQSGDYVAGNKIPFNGLELTLSLPAGGAAQNFVLDPPQNNNILDGMSDFITALRD 301

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            N+T     +      + ++     + +    +G     + +     +  + +     +K
Sbjct: 302 PNITPDTFQLKVADATAHMKNARQNMDQGLGEIGGRMNGLEQVMGSNEGLSTLNQQARAK 361

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               + +   A LS     +  + +  +K+ KL++ +Y+
Sbjct: 362 VSEADLYEVIATLSKEDAALSATQLSFSKISKLTLFDYI 400


>gi|261209256|ref|ZP_05923648.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289566005|ref|ZP_06446443.1| regulatory protein [Enterococcus faecium D344SRF]
 gi|294616191|ref|ZP_06695988.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|260076802|gb|EEW64537.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289162203|gb|EFD10065.1| regulatory protein [Enterococcus faecium D344SRF]
 gi|291590946|gb|EFF22658.1| DNA-binding response regulator [Enterococcus faecium E1636]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN------KFPINAGMLRDSYESF 124
           L   R+   Q  + + ++I+      +++LL    D           +   +++ + ++ 
Sbjct: 52  LTDIRMPK-QTGIDAAKEILAKFPKAILLLLATFKDEEYIREAFSIGVKGYLIKQNLQAI 110

Query: 125 VTFANMTDEGQYLFSG--INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           +        GQ +F    I +  + +    T DS A  SF +     ++E +      + 
Sbjct: 111 IPSVKSAYNGQAVFGNEIIETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEI 170

Query: 183 LEVSSMNAQQMTDFIKQLEDKF 204
            +   ++   + ++I QL +K 
Sbjct: 171 ADALYLSDGTVRNYISQLLEKL 192


>gi|92114091|ref|YP_574019.1| flagellar hook-associated protein FlgL [Chromohalobacter salexigens
           DSM 3043]
 gi|91797181|gb|ABE59320.1| flagellin-like protein [Chromohalobacter salexigens DSM 3043]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 1/159 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST +++E+         ++ + + +++ +G+               +   Q     A++
Sbjct: 3   ISTVTMYEQGVSAMNRQQQNFMDVGQQIASGKRVVNPSDDPRAAARAVSVSQSLAVNAQQ 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             S       LS  ++ L+S+   +      +V    G   +      A  L  ++E+ V
Sbjct: 63  ESSRVTARNSLSQEESVLNSVSDAIGSAKSLVVQAGNGTLSDADRESLASDLEGAFETLV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFD 163
             AN TD  G YLFSG   + K  +     D++   S++
Sbjct: 123 GLANTTDGNGTYLFSGYQDNAKAFSRTDAGDAVDTISYE 161


>gi|153831579|ref|ZP_01984246.1| flagellar hook-associated protein 3 [Vibrio harveyi HY01]
 gi|148872089|gb|EDL70906.1| flagellar hook-associated protein 3 [Vibrio harveyi HY01]
          Length = 299

 Score = 44.3 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 116/355 (32%), Gaps = 65/355 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNH 61
           IS S   + M    +  N     + ++M TG    + SD  +        +L  E+E + 
Sbjct: 3   ISDSQFSQMMLQSLQTNNAGLGHVLQQMATGDRLTKLSDDPMA----SIKLLNLERENSA 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I +   + + +   LS  + HL S+ + ++ +   ++    G   +         L+   
Sbjct: 59  IGQYQSNIANLKTTLSAQETHLDSVNESLKSVRDLVLWGANGTLTDEDRSGMIIELKSYR 118

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +S  +  N  DE G YLFSG  +    ++                             AG
Sbjct: 119 DSIESSFNAQDEEGHYLFSGTQTDTPAVSN----------------------------AG 150

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V   + +++    K +                     +   +   E +++    N+
Sbjct: 151 GAYQVDGNSDKRVVTVAKGV--------------------TMDSNMTAKEILELGGGDNV 190

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                +  +  +  EF + +             LS +   L+ ++     +G    N++ 
Sbjct: 191 -----LNQIDALIAEFENPSPN---FQAEVDASLSAIDDTLANVLGAMTEIGGRHNNLDL 242

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                      +D   S    ++   A  +LS  +  ++ +     K+  L++ +
Sbjct: 243 MDSAHGENKLFVDKVTSDLSALDYGEASVRLSNYMAALQATQASYVKINDLNLFD 297


>gi|257882181|ref|ZP_05661834.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|294621968|ref|ZP_06701113.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|257817839|gb|EEV45167.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|291598447|gb|EFF29519.1| DNA-binding response regulator [Enterococcus faecium U0317]
          Length = 197

 Score = 44.3 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN------KFPINAGMLRDSYESF 124
           L   R+   Q  + + ++I+      +++LL    D           +   +++ + ++ 
Sbjct: 40  LTDIRMPK-QTGIDAAKEILAKFPKAILLLLTTFKDEEYIREAFSIGVKGYLIKQNLQAI 98

Query: 125 VTFANMTDEGQYLFSG--INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           +        GQ +F    I +  + +    T DS A  SF +     ++E +      + 
Sbjct: 99  IPSVKSAYNGQAVFGNEIIETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEI 158

Query: 183 LEVSSMNAQQMTDFIKQLEDKF 204
            +   ++   + ++I QL +K 
Sbjct: 159 ADALYLSDGTVRNYISQLLEKL 180


>gi|238752860|ref|ZP_04614325.1| Flagellar hook-associated protein [Yersinia rohdei ATCC 43380]
 gi|238708899|gb|EEQ01152.1| Flagellar hook-associated protein [Yersinia rohdei ATCC 43380]
          Length = 302

 Score = 44.3 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 54  EWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN 113
           + EQE++ I +   + + +   LS  +  +++++  + D+   L+        +      
Sbjct: 45  QLEQEQSAIEQYQQNITRLNNSLSKQEKSVTALKNELTDIKDELLSAASDSRGSLDMASY 104

Query: 114 AGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEE 172
              +    E+ VTF N     G+Y+FSG N+   P+  Y    S    + +   +     
Sbjct: 105 GNSIGARLETIVTFLNSKSGEGRYIFSGTNTDTSPV-SYDATTSEYSYAGNSDYRETTTA 163

Query: 173 NSKSL 177
           N  S+
Sbjct: 164 NGISV 168


>gi|260222475|emb|CBA32076.1| hypothetical protein Csp_D30310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 436

 Score = 43.9 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 8/174 (4%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           S ++    ++ L+K        L E + +G+                      + IA   
Sbjct: 10  SANAYDNALSNLSKR-QTALSNLQENLTSGKRVVRPSDDPTAAAQAERSLMRLSRIATDQ 68

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            +  +    ++ +++ L  +   +Q     +V    G     +    A  L+   E  + 
Sbjct: 69  RALEVQRNTMANAESTLGDVVDALQQFRELVVSAGNGSHTAAERQTIANQLQGLREQILG 128

Query: 127 FAN-MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
           +AN     GQ LF  + S+  P  G          + D    G   + + S  A
Sbjct: 129 YANRTDTNGQPLFGALASASVPFTG------PTATAPDYTYNGLPGQTATSETA 176


>gi|206974876|ref|ZP_03235791.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           H3081.97]
 gi|229195952|ref|ZP_04322705.1| Flagellar hook-associated protein 3 [Bacillus cereus m1293]
 gi|206746895|gb|EDZ58287.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           H3081.97]
 gi|228587511|gb|EEK45576.1| Flagellar hook-associated protein 3 [Bacillus cereus m1293]
          Length = 287

 Score = 43.9 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQLMDLNAQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS ++  LS + K +       +  L G     +       +    +  V
Sbjct: 63  QKDIADSKNVLSQTENTLSGIVKSLTRADQLTIQALNGPNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF 169
             AN  ++G+YLF G ++ + P     T     K    ++  G+
Sbjct: 123 YLANTKEQGRYLFGGNSAEKPPFADDGTYQGGEKDVMWKLNDGY 166


>gi|220917709|ref|YP_002493013.1| flagellar hook-associated protein 3 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955563|gb|ACL65947.1| flagellar hook-associated protein 3 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 294

 Score = 43.9 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 2/130 (1%)

Query: 21  ELNKDSVKLHEEMVTG-QSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTS 79
           +      +   +  +G +    G   GA    I     +   +     + +  +  L+  
Sbjct: 18  QARARLDRAVAQAASGVRVVHPGDDPGA-AARIAAERVKVQRMDAIATATARASDELAAV 76

Query: 80  QAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFS 139
            A L  +   +        +      D  +    A  +R    S V    +    +YL  
Sbjct: 77  DAALGEVANGLARAQELATMFASAPYDAAQRAAGAREVRGILASAVASLGVKVGNRYLLG 136

Query: 140 GINSSEKPLN 149
           G      P +
Sbjct: 137 GFRDGAPPFD 146


>gi|117620800|ref|YP_857336.1| flagellar hook-associated protein FlgL [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562207|gb|ABK39155.1| flagellar hook-associated protein 3 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 402

 Score = 43.9 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 46/401 (11%), Positives = 114/401 (28%), Gaps = 51/401 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+T+ +++R        N+     +E+++TG       +  + ++  L   +E +   + 
Sbjct: 3   ITTNMVYDRNISSLNGANERLSTAYEQLMTGNKFKTAGEDPSGMSQKLALTKEIDLFKQY 62

Query: 66  LHSNSLVTKRL---STSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
             + SL+   L    T    L++     Q ++        G  D          L+    
Sbjct: 63  GVNGSLLENSLGHEETVLTALNTAMTSAQTLIQKANDSAVGYEDRQAIASELEGLQKQMF 122

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPL----------------NGYFTKDSLAKKSFDQML 166
             +   N    G+Y+F G  S  +P                        ++   + D   
Sbjct: 123 DLMNSKNSQ--GEYIFGGNQSKTQPFIQDASGNYVFQGDTGQRNIQVSPTVQIAANDSGF 180

Query: 167 QGF--LEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY 224
             F  +     S     +++V   +      F +   D       +  N    +    + 
Sbjct: 181 NLFEIVPTRRTSSAGSANIQVGVADQGHFDSFYRNNYDPSLASNQYTVNTIAGTPDTYEI 240

Query: 225 RIKDTEGIDVS--ANVNMRGIRDIMFVAVI--------------------------GTEF 256
           R      +        N      +     +                           T  
Sbjct: 241 RDGGGALLQSGDYVAGNKIPFNGLELTLSLPAGGAAQNFVLDPPQNNNILDGMSDFITAL 300

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
              N+T     +      + ++     + +    +G     + +     +  + +     
Sbjct: 301 RDPNITPDTFQLKVADATAHMKNARLNVDQGLGEIGGRMNGLEQVMGSNEGLSTLNQQAR 360

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +K    + +   A LS     +  + +  +K+ KL++ +Y+
Sbjct: 361 AKVSEADLYEVIATLSKEDAALSATQLSFSKISKLTLFDYI 401


>gi|209551493|ref|YP_002283410.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209537249|gb|ACI57184.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 389

 Score = 43.9 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 8/131 (6%)

Query: 226 IKDTEGIDVSANVNMRGIRDIMFV-AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGI 284
           ++DT  I+ S+ +             ++       ++T   +  L    L+ V+  L  +
Sbjct: 254 VRDTGAIETSSGIIGTAFNGTYGGTFIVMASIYDLDITGFTQGQL-DSALTGVELVLGAM 312

Query: 285 IEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMI 344
               + LG     I  +  F+   ++ ID+ + + +  +     ++LS L  + +++   
Sbjct: 313 TAAGSALGSISTRIQLQENFVSGLHDSIDSGVGRLVDADMEEESSKLSALQTQQQLA--- 369

Query: 345 TTKLQKLSILN 355
              +Q LSI N
Sbjct: 370 ---VQSLSIAN 377


>gi|319944128|ref|ZP_08018406.1| flagellar hook-associated protein 3 [Lautropia mirabilis ATCC
           51599]
 gi|319742622|gb|EFV95031.1| flagellar hook-associated protein 3 [Lautropia mirabilis ATCC
           51599]
          Length = 299

 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++++    +      E      KL ++  TGQ  +           +     ++      
Sbjct: 4   VASNQFRNQAVQTITEQQATIAKLQQQASTGQKVNRPSDDPLAAAEVERLRSDQARTNIE 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               S    +++ +++ L +  + +Q     ++    G  +       AG L       +
Sbjct: 64  KRMMSFAKSQMAQAESLLGNGIETLQRARDLMISARNGVMNREDRETIAGQLMQYRIELL 123

Query: 126 TFAN-MTDEGQYLFSGINSSEKPL 148
             AN  T +G Y+F G  S   P 
Sbjct: 124 DIANQQTQDGNYIFGGSGSEHAPF 147


>gi|291516641|emb|CBK70257.1| YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
           [Bifidobacterium longum subsp. longum F8]
          Length = 883

 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 74/265 (27%), Gaps = 12/265 (4%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
               K   A    + +   K    S   L+  Q   Q     LV  L   T + +    A
Sbjct: 199 LADAKQTTASLKQTVAAAQKASRQSGTLLTETQAGSQAFSTTLVGAL--DTSSAQLSGLA 256

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENS 174
             + ++  S     N            N+   PLN   T  S  K +  +   G    + 
Sbjct: 257 VHVNNAAGSITGSFNSAQNSVDTI--TNTLSAPLNATQTSISDLKDALTKAGIGKDTTDP 314

Query: 175 KSLLAGQHLEV--SSMNAQ--QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
                 + ++   S ++ Q  Q+  F        +  +    N S A  +     I    
Sbjct: 315 VGQNIWKQIDALDSLISKQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALN 374

Query: 231 GIDVSANVN-MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
               S     M  I   +         L   LT    +    +      Q +  + + + 
Sbjct: 375 TARGSLTGTVMPSITSSLNSFAALNGTLDGTLTS--LSGTLDQADGLFDQLVDTLNQTKT 432

Query: 290 VLGISEKNINE-ERVFLQNKNNIID 313
            +  ++ ++ +        + +I  
Sbjct: 433 TISSTQDSLRQVASDVATVRTDIAT 457


>gi|256833256|ref|YP_003161983.1| flagellar hook-associated protein 3 [Jonesia denitrificans DSM
           20603]
 gi|256686787|gb|ACV09680.1| flagellar hook-associated protein 3 [Jonesia denitrificans DSM
           20603]
          Length = 305

 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 100/356 (28%), Gaps = 57/356 (16%)

Query: 6   ISTSSIFERMNILTKELNKD---SVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
           IS  +       +   + K+     KL E+  +G+         AR +  +    E+   
Sbjct: 2   ISRVTQQSAQRSVLANMQKNLSAMAKLQEQASSGKKIAKVSDDPARASDSMSLRAERAAT 61

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVG-PLVILLEGKTDNNKFPINAGMLRDSY 121
            +   +       L+   + L+S   +++      +     G          A  +    
Sbjct: 62  QQYTRNAQDGLSWLNVIDSSLTSTASMLRRARDLTVQGSNLGTMSAQAREAVAAEIDGIK 121

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
              +  AN    G+ +F+G               S A  +F+    G+    +      +
Sbjct: 122 AGIMEQANTQYLGRSVFAGT--------------SSAGHAFEDTGTGYAFTGAAGTSVER 167

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
            +      A  +T  +         D                     TE    S N N+ 
Sbjct: 168 RI------AADVTVRVDADGASVFGDP--------------------TETDPASPNYNV- 200

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                + +  I     +      A N L  +        +  ++     +G     +   
Sbjct: 201 ----FVLLDDIANTLRTGGDPQSALNQLDTR--------IDAVLNTATTVGARTNQVESA 248

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 K+  + T IS    ++       L       + S   + ++ + ++L++L
Sbjct: 249 ISLTSYKSETLRTDISSVEDIDLAQTIMDLKLQEVAYQSSLNASARVLQPTLLDFL 304


>gi|90418386|ref|ZP_01226298.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90338058|gb|EAS51709.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 322

 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 109/353 (30%), Gaps = 45/353 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T+          +  N+        + TG          A  +       +   ++
Sbjct: 2   TSINTNIAAMAALQTLQATNRSMDATQNRISTGFRVAEAKDNAAYWSIATTMRSDNKALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               S  L   ++  +   L S   +V ++   LV   E   D  K       L+   +S
Sbjct: 62  AVEDSLGLGAAKVDIAYTALESAIDVVDEIKAKLVAASEPGVDKTKIQSEISELKKQLQS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ-H 182
             + A+        FSG N        +   D+        ++  F  +++ ++  G   
Sbjct: 122 IASSAS--------FSGEN--------WLQNDASVAAGSKDIVASFNRDSTGAVSIGTIT 165

Query: 183 LEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242
           ++V++M      +    +  K    +  +    +A+D+ +                    
Sbjct: 166 VDVTAMTLIGTVNETTGVLTKNYHADGISTPIGDATDYVLLD------------------ 207

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
                             LT     +    M+  V   L  +    A LG ++  I  ++
Sbjct: 208 ----AGATGTAASGTEIALTGTTTTLEISSMIKVVDAILKDMTNVAANLGAAKSRIELQQ 263

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
            F+ N  + I + I   +  +      +L  L  + ++       +Q LSI N
Sbjct: 264 NFVSNLTDSISSGIGALVDADMTEESTRLKALQTQQQLG------VQALSIAN 310


>gi|269960123|ref|ZP_06174499.1| flagellar hook-associated protein 3 [Vibrio harveyi 1DA3]
 gi|269835094|gb|EEZ89177.1| flagellar hook-associated protein 3 [Vibrio harveyi 1DA3]
          Length = 299

 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 116/355 (32%), Gaps = 65/355 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNH 61
           IS S   + M    +  N     + ++M TG    + SD  +        +L  E+E + 
Sbjct: 3   ISDSQFSQMMLQSLQTNNAGLGHVLQQMATGDRLTKLSDDPMA----SIKLLNLERENSA 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I +   + + +   LS  + HL S+ + ++ +   ++    G   +         L+   
Sbjct: 59  IGQYQSNIANLKTTLSAQETHLDSVNESLKSVRDLVLWGANGTLTDEDRSGMVIELKSYR 118

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +S  +  N  DE G YLFSG  +    ++                             AG
Sbjct: 119 DSIESSFNAQDEEGHYLFSGTQTDTPAVSN----------------------------AG 150

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
              +V   + +++    K +                     +   +   E +++    N+
Sbjct: 151 GAYQVDGNSDKRVVTVAKGV--------------------TMDSNMTAKEILELGGGDNV 190

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                +  +  +  EF + +             LS +   L+ ++     +G    N++ 
Sbjct: 191 -----LNQIDALIAEFENPSPN---FQAEVDASLSAIDDTLANVLGAMTEIGGRHNNLDL 242

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                      +D   S    ++   A  +LS  +  ++ +     K+  L++ +
Sbjct: 243 MDSAHGENKLFVDKVTSDLSALDYGEASVRLSNYMAALQATQASYVKINDLNLFD 297


>gi|222147580|ref|YP_002548537.1| flagella associated protein [Agrobacterium vitis S4]
 gi|221734568|gb|ACM35531.1| flagella associated protein [Agrobacterium vitis S4]
          Length = 320

 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 45/352 (12%), Positives = 116/352 (32%), Gaps = 44/352 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + ++ D       + +G   +      A  +       +   + 
Sbjct: 2   TSIMTNNAAISALSTLRSISSDMETTQSRISSGYKVESASDNAAYWSIATTMRSDNKALG 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   +  T+   + S   +V D+   LV   E   D +K       L++   S
Sbjct: 62  AVEDAIGLGAAKTDTAYTGMESAISVVSDIKAKLVAAREPGVDKDKINKELTELKNQLGS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A  +  G+               +   +S +  +  +M+  F+  N        ++
Sbjct: 122 VAKSA--SFNGE--------------NWLYDNSDSTGTTQEMVGSFVRGN------DGNV 159

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            + +++       +   E     D       + A+          +  +  S   N    
Sbjct: 160 SIKTISFDTTNSILINDEA---GDGGLLTKGTVATYAYGTTTTTASYYLISSVAGNTSSA 216

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            ++   +    + +               M+++V + L+ + +  A +G +   +  +  
Sbjct: 217 SEVTLTSTTTDDEIDG-------------MVASVDKMLTSMTDAAATIGATTSRLKLQDS 263

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+++ ++ IDT + + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 264 FIKDLSDTIDTGVGRLVDADMNEESTKLKALQTQQQLG------IQSLSIAN 309


>gi|257890986|ref|ZP_05670639.1| response regulator [Enterococcus faecium 1,231,410]
 gi|257827346|gb|EEV53972.1| response regulator [Enterococcus faecium 1,231,410]
          Length = 202

 Score = 43.9 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN------KFPINAGMLRDSYESF 124
           L   R+   Q  + + ++I+      +++LL    D           +   +++ + ++ 
Sbjct: 52  LTDIRMPK-QTGIDAAKEILAKFPKAILLLLTTFKDEEYIREAFSIGVKGYLIKQNLQAI 110

Query: 125 VTFANMTDEGQYLFSG--INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           +        GQ +F    I +  + +    T DS A  SF +     ++E +      + 
Sbjct: 111 IPSVKSAYNGQAVFGNEIIETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEI 170

Query: 183 LEVSSMNAQQMTDFIKQLEDKF 204
            +   ++   + ++I QL +K 
Sbjct: 171 ADALYLSDGTVRNYISQLLEKL 192


>gi|153839998|ref|ZP_01992665.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           AQ3810]
 gi|149746458|gb|EDM57467.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus
           AQ3810]
          Length = 397

 Score = 43.9 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 11/168 (6%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQ 57
             T IS+   ++ +    +          E++ +G+     SD  L        I    Q
Sbjct: 1   MLTRISSFHNYQSVQNDLRRQENKIHHNQEQLASGKKLLKPSDDPLA----AHYIQNIGQ 56

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
           ++  + + L S  LV  RL   + ++++ +    +     + ++ G             L
Sbjct: 57  QQEQLKQYLSSIVLVRNRLENHEVNIANAESFADESKRLTMEMINGAFSAEDRQAKKREL 116

Query: 118 RDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
            +   + +   N  D  G Y+F+G     +P   Y  KD   + + D 
Sbjct: 117 EEIANNLLNLVNAQDESGNYVFAGTKPKSQPF--YRDKDGSVQYAGDD 162


>gi|325291954|ref|YP_004277818.1| flagellin protein FlaD [Agrobacterium sp. H13-3]
 gi|45479288|gb|AAS66690.1| FlaD [Agrobacterium sp. H13-3]
 gi|325059807|gb|ADY63498.1| flagellin protein FlaD [Agrobacterium sp. H13-3]
          Length = 430

 Score = 43.9 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           ++  VA   + F        A + +   M+S V + L  +    + LG  +  IN +  F
Sbjct: 316 NLDVVAAAMSGFSGGTTNYTASDAI-DVMMSFVDKQLEAMTSTASSLGSLQSRINMQENF 374

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           +    ++ID  I + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 375 VSTLMDVIDKGIGRLVDADMNEESTRLKALQTQQQLG------IQALSIAN 419


>gi|33592486|ref|NP_880130.1| flagellar hook-associated protein FlgL [Bordetella pertussis Tohama
           I]
 gi|33572132|emb|CAE41674.1| flagellar hook-associated protein 3 [Bordetella pertussis Tohama I]
 gi|332381903|gb|AEE66750.1| flagellar hook-associated protein FlgL [Bordetella pertussis CS]
          Length = 510

 Score = 43.9 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ I++              +L E++ +G+               +   Q  +  +  
Sbjct: 3   LSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAINVSQTSSMNSNY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +     + L      L S+ K +Q+M+  +V    G   +         L+ + E  V
Sbjct: 63  DANRKQAEQALGAQTNTLQSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFD 163
             AN TD  GQYLFSG     +P   Y    +  K +++
Sbjct: 123 GLANATDGNGQYLFSGYKGFTQP---YSFDAATGKVTYN 158


>gi|187918056|ref|YP_001883619.1| flagellar hook-associated protein FlgL [Borrelia hermsii DAH]
 gi|119860904|gb|AAX16699.1| flagellar hook-associated protein 3 [Borrelia hermsii DAH]
          Length = 423

 Score = 43.9 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 43/99 (43%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            NL +    ++  + L+ + + L+ I    A LG  E  ++     +  +   +   + K
Sbjct: 324 DNLEENREELIGSRSLAEIDESLNKIFATLADLGTKENRLDLSYERISKEIMDMKDDMVK 383

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  ++ ++ + ++L++L
Sbjct: 384 YTNLDVTKAITDLNMTSLAYQVSLGVSARIMQTTLLDFL 422


>gi|42780832|ref|NP_978079.1| flagellar hook-associated protein FlgL [Bacillus cereus ATCC 10987]
 gi|42736752|gb|AAS40687.1| flagellar hook-associated protein FlgL, putative [Bacillus cereus
           ATCC 10987]
          Length = 287

 Score = 43.9 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQLMDLNAQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS ++  LS + K +       +  L G     +       +    +  V
Sbjct: 63  QKDIADSKNVLSQTENTLSGIVKSLTRADQLTIQALNGPNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF 169
             AN  ++G+YLF G ++ + P     T     K    ++  G+
Sbjct: 123 YLANTKEQGRYLFGGDSAEKPPFADDGTYQGGEKDVMWKLNDGY 166


>gi|327254561|gb|EGE66177.1| flagellar hook-associated protein 3 [Escherichia coli STEC_7v]
          Length = 309

 Score = 43.9 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 102/351 (29%), Gaps = 51/351 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ +   + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNNLSGELAHVVEQMATGKEILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+        + NS          
Sbjct: 123 AALNYQDEDGHYVFGGTINDQPPIVALDDDGDGVTDSYS------YQGNSDHRQTTVSNG 176

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V       ++DF     D  +                                       
Sbjct: 177 VEVDTNVAVSDFFGSNLDVLNTLNS----------------------------------- 201

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTK--KMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
                  +  E    N+      V +     ++ V      +    A LG ++  ++   
Sbjct: 202 -------LSQELQDPNVDPADPQVQSDIQNAVNVVDTASDDLNASIASLGETQNTMSMLS 254

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
               + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 255 DAQTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 305


>gi|259907641|ref|YP_002647997.1| Flagellar hook-associated protein 3, FlgL [Erwinia pyrifoliae
           Ep1/96]
 gi|224963263|emb|CAX54747.1| Flagellar hook-associated protein 3, FlgL [Erwinia pyrifoliae
           Ep1/96]
 gi|283477484|emb|CAY73400.1| Flagellar hook-associated protein 3 FlgL [Erwinia pyrifoliae DSM
           12163]
          Length = 302

 Score = 43.9 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 92/316 (29%), Gaps = 69/316 (21%)

Query: 47  ARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKI-VQDMVGPLVILLEGKT 105
                 +  +     +     + S     +    + LSS+ K+  +++   LV  + G  
Sbjct: 44  GGAADAVILQNALAKMELYKDARSGARSGMEQEDSTLSSVGKLLTKNLSEKLVAAMNGTL 103

Query: 106 DNNKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
                 +    +    ++ +  AN  D  G+Y+FSG  +     +               
Sbjct: 104 SEEDRAVLGQEIEGISKNLLDLANTRDGSGRYVFSGFKTGTAAFDE-------------- 149

Query: 165 MLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY 224
                 + N +      H  V+  +  Q++     +    +  + + N  S AS      
Sbjct: 150 ------QGNYQGGDTAIHQTVADGSDMQISHLGSDIFMSGTSSDLFKNLQSAAS------ 197

Query: 225 RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGI 284
                                         E     L +    +        V  G+  +
Sbjct: 198 ------------------------------ELTKSPLDEEQLKLALGAASKAVDAGIDRL 227

Query: 285 IEQRAVLGISEKNINEERVFLQNKNNI-IDTYISKSIGVEQHTAHAQLSTLINK------ 337
            + +A LG   + +      L  + +   ++ + K   V       Q++ +         
Sbjct: 228 GKVQADLGTQLQQL----DALDIQADNDFNSIVGKLQSVLGADTSTQINLIQQTKMAEVV 283

Query: 338 IEMSYMITTKLQKLSI 353
           +E S  +   +QK+S+
Sbjct: 284 MEASMKVFQSMQKMSL 299


>gi|291085836|ref|ZP_06354189.2| flagellar hook-associated protein 3 [Citrobacter youngae ATCC
           29220]
 gi|291069995|gb|EFE08104.1| flagellar hook-associated protein 3 [Citrobacter youngae ATCC
           29220]
          Length = 298

 Score = 43.9 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 103/343 (30%), Gaps = 53/343 (15%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           M     +L+ D   +  +M TG+S           T I E  ++++ + +   +    T 
Sbjct: 1   MTQSFNDLSSDLSHVVTQMATGKSILLPSDDPIAATRITELNRQQSALDQYQTNIDSATA 60

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-E 133
            +S  ++ L  +   +  +   L+    G             ++   E+ V   N  D +
Sbjct: 61  GMSQQESILDGVNNDLLAIRDDLLEAANGTNTAESLSSLGQDIQSMTEAMVAALNYQDED 120

Query: 134 GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQM 193
           G Y+F G  +   P+            S+        + NS+         V       +
Sbjct: 121 GHYVFGGTVNDRPPIVAVDDDGDGVTDSYS------YQGNSEHRQTTVSNGVEVDTNVAV 174

Query: 194 TDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIG 253
           +DF     D  +     +    + S      +++                          
Sbjct: 175 SDFFGDSLDVLNTLTSLSKELQDPSVDPADPQVQSD------------------------ 210

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE---KNINEERVFLQNKNN 310
                            +  + TV      +    A +G ++     ++  +  +   N+
Sbjct: 211 ----------------IQNAIDTVDVASDELNASIATIGETQNTMTMLSGAQTDISTSND 254

Query: 311 IIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            + + +S     +   A    + L   ++ +    +K+ +L++
Sbjct: 255 QLISQLSDL---DYGPASITFTGLEMAMQATLKTYSKVSELNL 294


>gi|330830296|ref|YP_004393248.1| flagellar hook-associated protein 3 [Aeromonas veronii B565]
 gi|328805432|gb|AEB50631.1| Flagellar hook-associated protein 3 [Aeromonas veronii B565]
          Length = 402

 Score = 43.9 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+T+ I++R        N+     ++++ TG       +  A ++  +   +E +   + 
Sbjct: 3   ITTNMIYDRNIYSLNSANERLNTAYQQLQTGNKFQTAGEDPAGMSQKMALTKEIDLFKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + SL+   L   +  L S+   +      +     G    +     A  L    +   
Sbjct: 63  SVNGSLLENSLGHEETVLDSLNTAMLSAQTLIQKSNNGAISMDDRKAIASELEGLQQQMF 122

Query: 126 TFANM-TDEGQYLFSGINSSEKP 147
              N     G+++F G  S  +P
Sbjct: 123 DLMNSKNSSGEFIFGGNQSKTQP 145


>gi|332296508|ref|YP_004438431.1| flagellar hook-associated protein 3 [Thermodesulfobium narugense
           DSM 14796]
 gi|332179611|gb|AEE15300.1| flagellar hook-associated protein 3 [Thermodesulfobium narugense
           DSM 14796]
          Length = 291

 Score = 43.9 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 25  DSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLS 84
              K   E+ +G +             I+ ++++ N I    ++ +     L+++ + L+
Sbjct: 23  SIAKDSYELSSGNAIQLPQDNPVSNNYIMSFKEKINGINNYQNNITAGQSILNSTDSALT 82

Query: 85  SMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSS 144
           S+  I+ +    + +     T+ +        +    +S ++ AN +    Y+F+G  SS
Sbjct: 83  SISTILNNA-NTIALQGANVTNQDSLASLEKSVEALKQSLLSVANTSVGNTYIFAGSKSS 141

Query: 145 EKPLN 149
             P +
Sbjct: 142 SAPFS 146


>gi|205375050|ref|ZP_03227841.1| flagellar hook-associated protein FlgL [Bacillus coahuilensis m4-4]
          Length = 290

 Score = 43.9 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 85/262 (32%), Gaps = 22/262 (8%)

Query: 24  KDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83
               ++ +++ TG+               + +      I +   + S     L +S++ +
Sbjct: 21  NRLGQIQDQLATGKKITKPSDDPVVAMKGMYYRSNLTQIEQYKRNLSEGYLWLESSESAI 80

Query: 84  SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS 143
               + +Q +    V    G   ++     +  ++   E     AN    G+YLF+G + 
Sbjct: 81  EQANQGLQRVRELTVQGQNGTLSDDDKKAISAEIQQIVEDLENTANTKVAGKYLFNGTDV 140

Query: 144 SEKPLNGYFTKDSLA-------KKSFDQMLQGFLEENSKSLLAGQHLEVSSM-----NAQ 191
           +E P+                  +  + +        +          V  +     +  
Sbjct: 141 TESPIASSNPVTVATYGNKNYKIEVSENVFLDVSVNPNNVFSQKLFNTVQGIKDGLESGA 200

Query: 192 QMTDFIKQLEDKFS------DDEYWANNWSNASDHNIKYR-IKDTEGIDVSANVNMRGIR 244
            + +F+  L+D  S       +     N     +  +  + I  T+ +  + NVN   + 
Sbjct: 201 DLNNFLSDLDDVMSVMGAERSELGARYNRIEMVEQRLGSQEISATQILSDNENVN---ME 257

Query: 245 DIMFVAVIGTEFLSKNLTDGAR 266
           + +   ++     +  L+ GAR
Sbjct: 258 EAISELMMQEAVHNAALSTGAR 279



 Score = 36.2 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query: 217 ASDHNIKYRIKDTEGI--DVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKML 274
           A+  N  Y+I+ +E +  DVS N N       +F  V G +   ++  D          L
Sbjct: 154 ATYGNKNYKIEVSENVFLDVSVNPNN-VFSQKLFNTVQGIKDGLESGAD------LNNFL 206

Query: 275 STVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTL 334
           S +   +S +  +R+ LG     I      L ++       +S +  V    A ++L   
Sbjct: 207 SDLDDVMSVMGAERSELGARYNRIEMVEQRLGSQEISATQILSDNENVNMEEAISELMMQ 266

Query: 335 INKIEMSYMITTKLQKLSILNYL 357
                 +     ++ + ++L++L
Sbjct: 267 EAVHNAALSTGARIIQPTLLDFL 289


>gi|221069315|ref|ZP_03545420.1| flagellar hook-associated protein 3 [Comamonas testosteroni KF-1]
 gi|220714338|gb|EED69706.1| flagellar hook-associated protein 3 [Comamonas testosteroni KF-1]
          Length = 404

 Score = 43.9 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 124/411 (30%), Gaps = 62/411 (15%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS-----DYGLQLGARVTSILEW 55
           M    I T+++++             V L E+   G+       D      A        
Sbjct: 1   MSINRIGTANMYDSTINNLGSRQSSLVDLMEKTTAGKRVLRASDDPVAAAQAERARTRIT 60

Query: 56  EQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAG 115
             E +        + +        ++ L      +QD    +V    G  D         
Sbjct: 61  RSENDQRVLGAQRDVIAQG-----ESELGKAHSALQDFRDLVVQAGNGSYDQVARDALVQ 115

Query: 116 MLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDS------------------ 156
            +    E  + +AN  D  G  +F G+ S + PL       S                  
Sbjct: 116 QMESLREQILGYANAKDSNGLPIFRGLGSPDTPLQSTPPGSSSQLNPGQNTGSDNGLPIS 175

Query: 157 ----LAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDF----IKQLEDKFSDDE 208
                A  +       F+   + S       +V S+            +   +D  + + 
Sbjct: 176 LDGHAAWLNVPTGNGVFVVNGAASNSGKAWADVGSVTDPSQVTGDSYTLVFTKDPTTGEI 235

Query: 209 YWANNWSNASDHN----------------------IKYRIKDTEGIDVSANVNMRGIRDI 246
            +  N S+A+  N                      IK    D +   +S +        +
Sbjct: 236 SYEINSSSATATNPVVAATPYKEGQAITVGGQQISIKGTPADGDSFTMSPSTRTDIFSVL 295

Query: 247 MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQ 306
                I T       +   +  L  + LS +  G++ +   R+  G   K  +     ++
Sbjct: 296 DQA--IATVKGGTGGSTALQQGL-GRALSELDSGMNRVQAMRSYAGDQLKRADSLESDMK 352

Query: 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++    +   S++  ++  TA +Q+ T    ++ +     ++QKLS+ NY+
Sbjct: 353 DQALTQEGARSRAEDIDMITALSQVETQKVGLQAALQSYAQMQKLSLFNYI 403


>gi|116618967|ref|YP_819338.1| hypothetical protein LEUM_1891 [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097814|gb|ABJ62965.1| Predicted membrane protein [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 915

 Score = 43.5 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 99/320 (30%), Gaps = 20/320 (6%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILE-WEQEKNHIAERLHSNSLVTKRLS 77
             + + D+   + E +T + +     L A VT+I +     ++ I     +  L   ++S
Sbjct: 377 QLKTSLDNSNQNTEQIT-KLTSSMSSLAANVTTISDYISGTQSKIESVAKTQKLTDTQVS 435

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDE---- 133
             +  L     I   +      L E +T+      ++       ++ V   N +      
Sbjct: 436 ALETALLPTDDINDSLKSATTNLSELQTNLTTLIKSSNTSMSQLKAAVNTLNTSYGTSDD 495

Query: 134 GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQM 193
            + L+ GI+S    LN      +       ++  G  + + KS              +Q+
Sbjct: 496 TKTLYGGISSLVGSLNKVGDSTAQLSTGATKLTSGLSQLSGKSAQLISGSTQLQEGLEQL 555

Query: 194 TD---FIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFV- 249
                 +    +  +      ++ +     N       ++ I    +     +  +    
Sbjct: 556 NTNVPSLTSGIESLASGSSKLSDGTQKLSQNSDKLNAGSQKISSGLSSLNEKMPALGSAT 615

Query: 250 --AVIGTEFLSKNLTDGARN--------VLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
                G+  L+  L   A N               + +  G + + +  A LG     + 
Sbjct: 616 SKLSSGSSQLTSGLDKLAANNSKLLSGSTQLASGATKIADGSAKLADGSAQLGDGLTKVK 675

Query: 300 EERVFLQNKNNIIDTYISKS 319
           +    L +K    +  ++K 
Sbjct: 676 DGNATLADKLGQANNKVNKI 695


>gi|163850117|ref|YP_001638160.1| flagellin domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|163661722|gb|ABY29089.1| flagellin domain protein [Methylobacterium extorquens PA1]
          Length = 585

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 79/267 (29%), Gaps = 28/267 (10%)

Query: 89  IVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPL 148
              D+    V+ +          +NA           + AN    G  + + IN      
Sbjct: 336 TAMDVTTAKVLTVNDGAGVKTVTLNAASFSALGADATSAANTAVNGDDVAAMIN------ 389

Query: 149 NGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDE 208
                  +  K +  +    F                 ++N   +  F     D  +   
Sbjct: 390 -------AQLKTAGSKARVSFGGGALSFGSNAGGSTTITLNGADVAGFGFTAADSTTGTS 442

Query: 209 YWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNV 268
            +    + A   N K  +   +     +   +      + +A +        L       
Sbjct: 443 GFTGKGTAAGTTNAKGILDTVDATTTFSIGEIGTGGTGINIAGLVGTTGDTTL------- 495

Query: 269 LTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
             K +++ V++ ++ +      LG ++  I+ ++ F+       D  I   +  +     
Sbjct: 496 --KNIITQVEKAIASVTNAGTKLGANKTQIDGQKTFVDTLMKANDRTIGTLVDADIEEES 553

Query: 329 AQLSTLINKIEMSYMITTKLQKLSILN 355
            +L  L  + +++      +Q LSI N
Sbjct: 554 TKLKALQTQQQLA------VQALSIAN 574


>gi|218778839|ref|YP_002430157.1| flagellar hook-associated protein 3 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760223|gb|ACL02689.1| Flagellar hook-associated protein 3 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 290

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 57/146 (39%), Gaps = 5/146 (3%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           + IS++  F    + T     +     +  +    +D    L      ++    + +++ 
Sbjct: 6   SIISSNVTFGLGRLTTAMDRANLTIASQRQIL-TMADDPSAL----LQVMNLRSDMSYVD 60

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
           +   +  +    L+ S++ L++++ ++ ++    V +       ++    A  ++   E+
Sbjct: 61  QLNRNIEMGRTWLTASESALTNVEDLITEVKLLTVQMGSDNVGADERQAAAEAVQGFLET 120

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLN 149
            VT  N T   +Y+F+G  +      
Sbjct: 121 AVTLGNSTVGDRYIFAGSQNDSPAFT 146


>gi|296274001|ref|YP_003656632.1| flagellar hook-associated protein FlgL [Arcobacter nitrofigilis DSM
           7299]
 gi|296098175|gb|ADG94125.1| flagellar hook-associated protein FlgL [Arcobacter nitrofigilis DSM
           7299]
          Length = 372

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 108/362 (29%), Gaps = 31/362 (8%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
           LN+  +++  +  T +  D G       +  L  E + N            T +   S +
Sbjct: 15  LNQQQLRVSYQQSTQKKIDDGSDDSVVYSQQLFLEDKINVYDGLKTQVQNTTAQNKVSDS 74

Query: 82  HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGI 141
            L +++K + ++   ++       D       A  +  + ++  T  N   + +Y+FSG 
Sbjct: 75  TLDAIKKQLDEIKDEIIKGRNDTNDEISRKSIATQIEGAKKNLYTLVNERVQDEYIFSGS 134

Query: 142 NSSEKPLN-------GYFTKDSLAKKSFDQ---MLQGFLEENSKSLLAGQHLEVSSMNAQ 191
            ++++           Y    +L K + +      +G    +  S      +    ++ +
Sbjct: 135 ETNKQAFTQDANGKVSYNGNTTLRKSAVEVDSYRDRGVTGLDIMSYTTTAGVSGQPLSFK 194

Query: 192 QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN---------VNMRG 242
           +    I +   ++  +           D        + +    + N          N  G
Sbjct: 195 EGERIIDENGREWKLNAAQTVLVEYDEDGKSTKNFIEVKTTGEAPNKVHEIAELPKNEDG 254

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVL-------TKKMLSTVQQGLSGIIEQRAVLGISE 295
            +          +  + +  D A   L           L ++    +        LG   
Sbjct: 255 SQK-----TFTAKHNTFDAIDDAIKALRNNDGDGMSAALESLNNAWNAANTAHGELGARN 309

Query: 296 KNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
              N     +  K         ++   +      +   L       Y   +K  KLS++N
Sbjct: 310 ATFNAAEERITTKTTHFGVLAIQNDAADMTKVAIESQQLQLIYTSLYSSISKASKLSLVN 369

Query: 356 YL 357
           YL
Sbjct: 370 YL 371


>gi|269792280|ref|YP_003317184.1| flagellin domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099915|gb|ACZ18902.1| flagellin domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 23/145 (15%)

Query: 17  ILTKELNKDSVKL---HEEMVTGQSS--------DYGLQLGARVT--SILEWEQEKNHIA 63
           +L  ++  +  K+    +++ T +          D    L    T    +++ +  +   
Sbjct: 13  MLLSDMQSNLAKMLEIQKQLATQKKFSRPSDNPIDVTRSLSMDTTITENVQYRRNLDD-- 70

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
                       L+ ++     +  + Q +    V   +G   +      A  L    E 
Sbjct: 71  --------ALTWLNNTETAFDQITSVYQQVRQLAVYAGDGGLVDVDMGAIAEQLYQLQEE 122

Query: 124 FVTFANMTDEGQYLFSGINSSEKPL 148
               AN   EG++L SG+++  +P 
Sbjct: 123 MRNAANYEVEGRFLLSGLSTGVRPF 147



 Score = 42.8 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 37/105 (35%)

Query: 253  GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
              + L   + +  R  ++  +L  V      ++  R   G         +  L+  N  +
Sbjct: 903  VMDDLINAVRNEDRRGISDHLLKKVTDWGDNLLRCRTECGALINRYENTQARLKQNNVNL 962

Query: 313  DTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                SK   V+   A  Q        + S  +  ++ + +++++L
Sbjct: 963  TELQSKISDVDLAEAATQFQMAQAVYQASLAVIARIIQPTLVDFL 1007


>gi|115612999|ref|XP_782530.2| PREDICTED: similar to conserved hypothetical protein
           [Strongylocentrotus purpuratus]
 gi|115936933|ref|XP_001180380.1| PREDICTED: similar to conserved hypothetical protein
           [Strongylocentrotus purpuratus]
          Length = 1481

 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 12/127 (9%)

Query: 50  TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNK 109
               + ++  + I     SN+  T+RL  +   +  ++  VQ     +  L    +    
Sbjct: 51  AIDRQLKKLFDRIEGLEESNTATTERLEINDGRIMDLEANVQAKENEIKQLNSTISTQAT 110

Query: 110 FPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF 169
              N  +  +  E             ++F G + + +P           K+  +  LQ  
Sbjct: 111 TLNNLQLSVNDME------------YFVFLGTHCTSQPSTEDKDPPPFDKQPANAPLQEI 158

Query: 170 LEENSKS 176
              +S+ 
Sbjct: 159 APPSSEP 165


>gi|294786151|ref|ZP_06751405.1| putative phage infection protein [Parascardovia denticolens F0305]
 gi|315227354|ref|ZP_07869141.1| YhgE/Pip domain protein [Parascardovia denticolens DSM 10105]
 gi|294484984|gb|EFG32618.1| putative phage infection protein [Parascardovia denticolens F0305]
 gi|315119804|gb|EFT82937.1| YhgE/Pip domain protein [Parascardovia denticolens DSM 10105]
          Length = 924

 Score = 43.5 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 98/320 (30%), Gaps = 32/320 (10%)

Query: 46  GARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT 105
           GAR   I   ++ K ++     + + ++ +L+TS   L    K + D+   +  L     
Sbjct: 188 GARDDVISATDEAKTNVDSTQKALTALSTKLNTSLTSLDQASKTLTDLQTSVASLRRSVQ 247

Query: 106 DNNKFPINAGMLRDSYESFVTFANMT---------DEGQYLFSGIN----------SSEK 146
              K   NA     ++ +  +    +          +  +  + IN          +  +
Sbjct: 248 ATRKLIANAQSSMVTFNNTTSSLLTSGASKLSSLAVQTSFSAAAINKALSDLSINATDAQ 307

Query: 147 P-LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ------QMTDFIKQ 199
             L+G  +++       +Q LQG        L    + +V+ +  Q       +  F   
Sbjct: 308 AQLSGIVSRNDAIVTQLNQALQGSNLSKDSDLYKRLNQQVTQLQGQITAQKTALQSFSTT 367

Query: 200 LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN-MRGIRDIMFVAVIGTEFLS 258
              + +  +    N+++   +            +     N    +   +  A   T  L 
Sbjct: 368 STSRLTAAQSGVRNFASNLSNAATTSANALNTANTQLTGNMSTALVSSLSSANALTGSLD 427

Query: 259 KNLTD-----GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
            +L            L  +M   ++Q  S +      LG   K +      L   ++   
Sbjct: 428 GSLASLQTSLAQAKALIGQMKGILKQTSSTLATTAGSLGSISKQLTSIHTDLVALDSAKS 487

Query: 314 TYISKSIGVEQHTAHAQLST 333
               K I ++       ++ 
Sbjct: 488 WQRFKKISLDPQEISQFIAA 507


>gi|114706706|ref|ZP_01439606.1| flagellin C protein [Fulvimarina pelagi HTCC2506]
 gi|114537654|gb|EAU40778.1| flagellin C protein [Fulvimarina pelagi HTCC2506]
          Length = 424

 Score = 43.5 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 33/296 (11%), Positives = 85/296 (28%), Gaps = 10/296 (3%)

Query: 51  SILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDM-VGPLVILLEGKTDNNK 109
            I + + +   IA     +      + +S A  +S + ++          L  G    + 
Sbjct: 111 EITQLQNQLKSIASSASFSGQNWLSIDSSAASYTSSKDMISSFSRSAGGSLSVGSIRVDT 170

Query: 110 FPINAGMLRDSYESFVTFANMTDEGQYLFSGIN---SSEKPLNGYFTKDSLAKKSFDQML 166
                     +    +    +      L +G +   ++  P        +    +F    
Sbjct: 171 SSFALFDASGTKSGIIDSGKVNMTAVTLGAGTSAAGTAGPPATSGTYTPAAPTAAFTLDS 230

Query: 167 QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI 226
              +       + G   +   +    + D +   +   S    +A  ++ A D      +
Sbjct: 231 DDMISFTLA--VDGGTAQKVLITKGIIDDALGTTDGVVSS-ANYAKVFAKAVDFANVTGV 287

Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLT---DGARNVLTKKMLSTVQQGLSG 283
                  V  + +      + F A          +       + V  K  ++ V   +S 
Sbjct: 288 SVNATTGVVTSNSTGTTSTVAFAAGSSDSIGVSEMDITKSTVKTVDIKAYINIVDSAISK 347

Query: 284 IIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIE 339
           +    + LG  +  I+ +  F+ N  +  +  I   +  +      +L  L  + +
Sbjct: 348 VTAAASTLGSVKNRIDIQTSFVNNLMDTFEKGIGTLVDADMTEESTKLKALQTQQQ 403


>gi|312133693|ref|YP_004001032.1| membrane protein [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772961|gb|ADQ02449.1| Hypothetical Membrane protein [Bifidobacterium longum subsp. longum
           BBMN68]
          Length = 906

 Score = 43.5 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 74/265 (27%), Gaps = 12/265 (4%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
               K   A    + +   K    S   L+  Q   Q     LV  L   T + +    A
Sbjct: 228 LADAKQTTASLRQTVAAAQKASRQSGTLLAETQAGSQAFSTTLVGAL--DTSSAQLSGLA 285

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENS 174
             + ++  S     N            N+   PLN   T  S  K +  +   G    + 
Sbjct: 286 VHVNNAAGSITGSFNSAQNSVDTI--TNTLSAPLNATQTSISDLKDALTKAGIGKDTTDP 343

Query: 175 KSLLAGQHLEV--SSMNAQ--QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
                 + ++   S ++ Q  Q+  F        +  +    N S A  +     I    
Sbjct: 344 VGQNIWKQIDALDSLISKQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALN 403

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEF-LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
               S       +  +            + + T  + +    +      Q +  + + + 
Sbjct: 404 TARGSLT--GTVMPSLTSSLNSFAALNGTLDGTLTSLSGTLDQADGLFDQLVDTLNQTKT 461

Query: 290 VLGISEKNINE-ERVFLQNKNNIID 313
            +  ++ ++ +        + +I  
Sbjct: 462 TISSTQDSLRQVASDVATVRTDIAT 486


>gi|324325757|gb|ADY21017.1| flagellar hook-associated protein FlgL [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 287

 Score = 43.5 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS ++  LS + K +       +  L G     +       +    +  V
Sbjct: 63  QKDIADSKNVLSQTENTLSGIVKSLTRADQLTIQALNGPNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF 169
             AN  ++G+YLF G ++ + P     T     K    ++  G+
Sbjct: 123 YLANTKEQGRYLFGGNSAEKPPFADDGTYQGGEKDVMWKLNDGY 166


>gi|160878767|ref|YP_001557735.1| hypothetical protein Cphy_0609 [Clostridium phytofermentans ISDg]
 gi|160427433|gb|ABX40996.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]
          Length = 772

 Score = 43.5 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 44/290 (15%)

Query: 50  TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEG------ 103
           +  ++ +   N ++  ++ +S +   + T Q  ++S  + V  ++G +    +       
Sbjct: 291 SGAVKLDTATNGLSSIVNGSSSLATGVDTLQNSITSYTQGVDSLLGNISDTTQALAAYAK 350

Query: 104 KTDNNKFPINAGMLRD--------SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
           +T +         L +        + ++  +  N       L SGI++    L+      
Sbjct: 351 QTGDPTITKIVANLTNEKNIANLNALKNASSALNTGVNS--LSSGIHT----LSDGAQNL 404

Query: 156 SLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWS 215
           +  K S  ++  G +     +             A  +   +  L             ++
Sbjct: 405 TQLKNSITELKNGLISAKQGATSLALG-------AGNLNAGLNTLYSA-------GGEFT 450

Query: 216 NASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLS 275
            A+            G+        +GI  +   +       +  L +GA +    + ++
Sbjct: 451 KATSQLTIGATSLNNGLSSLT----KGIDTLAVGSTSLYN-GADKLNNGASS--LGEGMN 503

Query: 276 TVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
           T+  G++ + +  + L   +  I      ++   N     +    G++ +
Sbjct: 504 TLISGVTTLDDGASQL---KDGITTANEGVKTSINSASEQLKALEGLDTY 550


>gi|149201616|ref|ZP_01878590.1| flagellar hook-associated protein 3 FlgL [Roseovarius sp. TM1035]
 gi|149144664|gb|EDM32693.1| flagellar hook-associated protein 3 FlgL [Roseovarius sp. TM1035]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 47/413 (11%), Positives = 112/413 (27%), Gaps = 63/413 (15%)

Query: 5   GISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE 64
            I TS           ++N+    L  ++ +G +         R   +   ++++  +  
Sbjct: 2   SIGTSFFHNVTTRNLSQVNERISDLQGQISSGVNDPRPSADPVRALRLSAAKEQQEALDR 61

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             ++      RL  +   LS    +++ +    +          +       +R   +S 
Sbjct: 62  YSNNLERAGARLDQADTVLSEAGNVMRRVGELALRAASDTATATERDSIGTEVRALRDSL 121

Query: 125 VTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           +  AN  D  G+ LF G  +   P               D          S SL  G   
Sbjct: 122 LGLANARDESGRALFGGYGTQSDPFRD---GPGGVVYQGDGGQSRLQVSESLSLPTGLSG 178

Query: 184 EVSSMNAQQ-------MTDFIKQLEDKFSDDEYWANN----------------WSNASDH 220
           +       +       + DF+  L    S                        WS   + 
Sbjct: 179 DAVFAIGSEGGDVFAVIDDFLASLGTASSAPRASVTGAGQLDLDLTLSRAPAAWSMTLEG 238

Query: 221 NIKYRIK----------------DTEGIDVSANVNMRG--------------IRDIMFVA 250
            +                     + +      +  +                + +I    
Sbjct: 239 PLGSTTIPFVAAEGAMSGAVEAINAQTAATGISAALDPETGGLMLTAQGDVKVSNIARAP 298

Query: 251 VIGTEFLSKNLTDGARNVLT------KKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
             G   +     +G    L         ++  ++     +I+QR  LG    +   +   
Sbjct: 299 DAGGVLMVARDAEGGTQALVPFARTRDAVIDRLRGASEHLIDQRTQLGALSADAARQSDV 358

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + N+   +   +S    ++   A  +L   +   + +     ++ + S+ ++L
Sbjct: 359 IDNRKLAMSQAVSGLEDLDLANALTRLQQSMLTRDATQQAYVRITQQSLFDFL 411


>gi|197122917|ref|YP_002134868.1| flagellar hook-associated protein 3 [Anaeromyxobacter sp. K]
 gi|196172766|gb|ACG73739.1| flagellar hook-associated protein 3 [Anaeromyxobacter sp. K]
          Length = 294

 Score = 43.5 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 2/130 (1%)

Query: 21  ELNKDSVKLHEEMVTG-QSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTS 79
           +      +   +  +G +    G   GA    I     +   +     + +  +  L+  
Sbjct: 18  QARARLDRAVAQAASGVRVVHPGDDPGA-AARIATERVKVQRMDAIATATARASDELAAV 76

Query: 80  QAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFS 139
            A L  +   +        +      D  +    A  +R    S V    +    +YL  
Sbjct: 77  DAALGEVANGLARAQELATMFASAPYDAAQRAGGAREVRGILASAVASLGVKVGNRYLLG 136

Query: 140 GINSSEKPLN 149
           G      P +
Sbjct: 137 GFRDGAPPFD 146


>gi|283784091|ref|YP_003363956.1| lateral flagellar hook associated protein 3 [Citrobacter rodentium
           ICC168]
 gi|282947545|emb|CBG87098.1| lateral flagellar hook associated protein 3 [Citrobacter rodentium
           ICC168]
          Length = 309

 Score = 43.5 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 108/357 (30%), Gaps = 56/357 (15%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T   +      M     +L+ D   +  +M TG+S           T I +  ++++
Sbjct: 1   MRVTAQQSYV---SMTRNFNDLSGDLAHVVTQMATGKSILLPSDDPIASTRITQLNRQQS 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            I +  ++    +  +S  ++ L  +   +  +   L+    G    +        +   
Sbjct: 58  AIEQYQNNIDSASAGMSQQESILDGVNNALLSVRDDLLEAANGTNTADSLASLGQDIASL 117

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
            ES V   N  D +G Y+F G  + + P+            S+     G   + + S   
Sbjct: 118 TESMVAALNYQDEDGHYVFGGTVNDKPPILAVDDDGDGVTDSYSYQGNGDHRQTTVSNGV 177

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                V+      ++DF     D  +     +    + S      +I+            
Sbjct: 178 EVDTNVA------VSDFFGSSLDVLNTLNALSQELQDPSLDPADPQIQSD---------- 221

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE---K 296
                                             +  V Q    +    A LG ++    
Sbjct: 222 ------------------------------IASAIDVVDQAADSLNASVASLGETQNTMT 251

Query: 297 NINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++  +  +   N+ +   +S     +   A    + L   +E +    +K+ +L++
Sbjct: 252 MLSGAQTDIATSNDQLIGSLSDL---DYGPASITFTGLEMAMEATLKTYSKVSELNL 305


>gi|222147579|ref|YP_002548536.1| flagella associated protein [Agrobacterium vitis S4]
 gi|221734567|gb|ACM35530.1| flagella associated protein [Agrobacterium vitis S4]
          Length = 320

 Score = 43.5 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 114/352 (32%), Gaps = 44/352 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + ++ D       + +G   +      A  +       +   + 
Sbjct: 2   TSIMTNTAAISALSTLRSISSDMETTQSRISSGYKVESASDNAAYWSIATTMRSDNKALG 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   +  T+   + S   +V D+   LV   E   D  K       L++   S
Sbjct: 62  AVEDAIGLGAAKTDTAYTGMESAISVVSDIKAKLVAAREPGVDKEKINKELAELKNQLSS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A  +  GQ               +   +S +  +  +M+  F+  N        ++
Sbjct: 122 VAKSA--SFNGQ--------------NWLYDNSDSTGTTQEMVGSFVRGN------DGNV 159

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            + +++       +   E     D       + A+          +  +  S   N    
Sbjct: 160 SIKTISFDTTNSILINDEA---GDGGLLTKGTVATYAYGTTTTTASYYLISSVAGN---- 212

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                     +      LT    +     M+++V + L+ + +  + +G +   +  +  
Sbjct: 213 ---------TSSASEVTLTSTTTDDEIDGMVASVDKMLTSMTDAASTIGATTSRLKLQDS 263

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+++ ++ IDT + + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 264 FIKDLSDTIDTGVGRLVDADMNEESTKLKALQTQQQLG------IQSLSIAN 309


>gi|150395493|ref|YP_001325960.1| flagellin domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150027008|gb|ABR59125.1| flagellin domain protein [Sinorhizobium medicae WSM419]
          Length = 395

 Score = 43.2 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 267 NVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
                 ++S V   L+ +    A LG     I+ +  F+   ++ ID+ + + +  + + 
Sbjct: 302 AAALDALISGVDAALTDMTSAAADLGSIAMRIDLQSDFVNKLSDSIDSGVGRLVDADMNE 361

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILN 355
              +L  L  + +++      +Q LSI N
Sbjct: 362 ESTRLKALQTQQQLA------IQSLSIAN 384


>gi|222095363|ref|YP_002529423.1| flagellar hook-associated protein flgl [Bacillus cereus Q1]
 gi|221239421|gb|ACM12131.1| flagellar hook-associated protein FlgL, putative [Bacillus cereus
           Q1]
          Length = 287

 Score = 43.2 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS ++  LS + K +       +  L G     +       +    +  V
Sbjct: 63  QKDIADSKNVLSQTENTLSGIVKSLTRADQLTIQALNGPNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF 169
             AN  ++G+YLF G ++ + P     T     K    ++  G+
Sbjct: 123 YLANTKEQGRYLFGGNSAEKPPFADDGTYQGGEKDVMWKLNDGY 166


>gi|146277701|ref|YP_001167860.1| flagellin-like protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555942|gb|ABP70555.1| Flagellin and related hook-associated protein-like protein
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 409

 Score = 43.2 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 88/309 (28%), Gaps = 27/309 (8%)

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
                 +      R   +   L S              +             +  LR + 
Sbjct: 114 AEALREAMLAAANRKDGTGQGLFSGYATGAAFEKTATGVRFAGNAGQPVAQLSESLRVA- 172

Query: 122 ESFVTFANMTDEGQYLFSGINSS-------------EKPLNGYFTKDSLAKKSFDQMLQG 168
                    +  G  +F  + +                 L+   +K + ++ S       
Sbjct: 173 --------TSLGGNEVFMTVETEGGVRSLFDLADDLVAALSPPISKATTSRTSVGTASLS 224

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
                 ++ L           + ++   +    ++  +        +  +  +   R+  
Sbjct: 225 IEPVQGEATLRFTLTGPGG--SAEIEQRLPGSVEEAINAAAATTGITATTAADGSLRLAS 282

Query: 229 TEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
              I++S      G R++  +A +  E   +      R      M +     +  + EQR
Sbjct: 283 LGTIELSGMSRSDGAREV--LATLTDERGREGWVVDKR-FGASPMTAAFDAAIGHMAEQR 339

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           A  G    +++ +   ++ +   +   ++    ++   A  +L  L+   E +     K+
Sbjct: 340 ARAGSLAASVDSQMEAIKGRQTRMTQTVAGLEDLDVAAAVTRLQALLLTQEAAQQTYVKI 399

Query: 349 QKLSILNYL 357
              S+ +YL
Sbjct: 400 ASRSLFDYL 408


>gi|289679011|ref|ZP_06499901.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           syringae FF5]
          Length = 392

 Score = 43.2 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  FE  N   +    +  K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFFESTNTNYQRNYSNLNKTSEEVSSGIKLNTAGDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   + T++  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ETNIGTINTNVVTTETTLTSIIDTMQAAREQIVSAGSGAFTDSDRLAKASALKQYQSQIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+FSG  +S  P
Sbjct: 123 GLMNSQDPNGQYIFSGSKASTPP 145


>gi|217959223|ref|YP_002337771.1| flagellar hook-associated protein FlgL [Bacillus cereus AH187]
 gi|229138439|ref|ZP_04267028.1| Flagellar hook-associated protein 3 [Bacillus cereus BDRD-ST26]
 gi|217066372|gb|ACJ80622.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           AH187]
 gi|228644976|gb|EEL01219.1| Flagellar hook-associated protein 3 [Bacillus cereus BDRD-ST26]
          Length = 287

 Score = 43.2 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS ++  LS + K +       +  L G     +       +    +  V
Sbjct: 63  QKDIADSKNVLSQTENTLSGIVKSLTRADQLTIQALNGPNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF 169
             AN  ++G+YLF G ++ + P     T     K    ++  G+
Sbjct: 123 YLANTKEQGRYLFGGDSAEKPPFADDGTYQGGEKDVMWKLNDGY 166


>gi|288574710|ref|ZP_06393067.1| flagellin domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570451|gb|EFC92008.1| flagellin domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 1030

 Score = 43.2 bits (100), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 2/145 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQE-KNHIAE 64
           +S S ++  M           +K++++  TG+           VT  L        +   
Sbjct: 4   VSNSMMYGGMMTDMHNNLARLLKMNKQGSTGKLHHKPSDSPIDVTRELSLSTTIYENEQY 63

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             + N  +T  L  + + L+ + +++  +    V    G  ++ +    A  + +  E  
Sbjct: 64  IRNMNDGLTW-LKNTDSALNQIGEMIDRVRSLSVRAGSGALNDEEMDAIAQEMIELQEGI 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLN 149
              AN + EG+YL SG  +S     
Sbjct: 123 REAANYSVEGRYLLSGAATSVPAFQ 147


>gi|303325591|ref|ZP_07356034.1| flagellar hook-associated protein 3 [Desulfovibrio sp. 3_1_syn3]
 gi|302863507|gb|EFL86438.1| flagellar hook-associated protein 3 [Desulfovibrio sp. 3_1_syn3]
          Length = 519

 Score = 43.2 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 32/87 (36%)

Query: 271 KKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQ 330
            + L+ +++    I  +    G  E  +      L  +       +S +  ++      +
Sbjct: 433 GQSLAALKKAHERITTEADRYGGLENRVEMAADVLSFQKLDQQERLSYTEDIDLTELLTK 492

Query: 331 LSTLINKIEMSYMITTKLQKLSILNYL 357
           L+      +     ++ + KLS+ NY+
Sbjct: 493 LTRQQLTYQTVLQSSSMIMKLSLANYI 519


>gi|323527705|ref|YP_004229858.1| flagellar hook-associated protein 3 [Burkholderia sp. CCGE1001]
 gi|323384707|gb|ADX56798.1| flagellar hook-associated protein 3 [Burkholderia sp. CCGE1001]
          Length = 407

 Score = 43.2 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 50/404 (12%), Positives = 127/404 (31%), Gaps = 52/404 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++  F        +      +L+ E+ +G S              ++       +A+ 
Sbjct: 3   ISSTQYFTMNVATMSDQQAQLSQLYAEISSGVSLSTPSDNPLGAAQAVQLSSTATSLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     L    + L S+  ++Q +   ++   +G  +N      A  L+      +
Sbjct: 63  TSNQNTALASLQLEDSTLGSVNNVLQSIHTLVLRAGDGSLNNGDRGSIATELQSLRSQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTK----------------DSLAKKSFDQMLQG 168
           T AN TD +G YLF+G  SS +P N                      S   ++ D  L  
Sbjct: 123 TLANATDPQGNYLFAGYQSSAQPYNTNSAGVVTYSGDTGTPAVQITGSHVVQTGDNGLAI 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
           F         A       +     ++          ++ + ++ ++++++ + +      
Sbjct: 183 FGSVAPIGTSAVPAAAAGNTGTGVISTVSLNNPTNPANADTYSIDFTSSTTYTVSQTDPA 242

Query: 229 TEGIDVS--------------------------------ANVNMRGIRDIMFVAVIGTEF 256
           T  +  S                                       +     ++ + +  
Sbjct: 243 TGAVTTSGPQAFTAGSAITLGGQSISISGAPNAGDSFSVTPATQGSMDVFANLSQLISTL 302

Query: 257 ---LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
              +S   +  +        ++ ++  ++ ++  +A +G  E+ I   +   Q       
Sbjct: 303 QSPVSGGASTASLQSALVTSMAQLENTMNNVVTAQATVGGREQEIQALQTVTQANTLQTS 362

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +S     +      + +   N ++ +     K+Q +S+  YL
Sbjct: 363 SNLSDLTQTDMIKTVGKYTLAQNALQAAQQAFVKIQNMSLFQYL 406


>gi|241666531|ref|YP_002984615.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240861988|gb|ACS59653.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 302

 Score = 43.2 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 113/352 (32%), Gaps = 63/352 (17%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T++         + +N +       + TG   D      A  +       +   ++
Sbjct: 2   TSINTNNSAMSALQTLRSINSNLETTQNSVSTGYRVDTASDNAAYWSIATTMRSDNKALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+   + +   +V ++   LV   E   D +K       L++   S
Sbjct: 62  AVSDALGLGAAKVDTAYTAMENAIDVVDEIKSKLVAATEDGVDKSKVQEEITQLQEQLLS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N        +   +S  K             +    ++ +  
Sbjct: 122 IAQSAS--------FSGEN--------WVAGESGTKSVVSS-----FVRDGSGAVSVKVT 160

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           + +   +         +    S                    I    GI  + + N   +
Sbjct: 161 DYALDTSST-----GNVLFGMSSGT-----------------IDTASGILGTVDANGDSV 198

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                 ++  T+F +  +            LST++  LS +    A LG     I  +  
Sbjct: 199 -----YSLDITDFTTGQIQS---------ALSTIESALSAMTSAGAQLGSISTRIELQED 244

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+   ++ I++ + + +  +     ++LS L  + +++      +Q LSI N
Sbjct: 245 FVGALSDSIESGVGRLVDADMEEESSRLSALQTQQQLA------IQSLSIAN 290


>gi|256020235|ref|ZP_05434100.1| flagellar hook-associated protein 3 [Shigella sp. D9]
 gi|331666553|ref|ZP_08367427.1| flagellar hook-associated protein 3 [Escherichia coli TA271]
 gi|332281397|ref|ZP_08393810.1| flagellar hook associated protein [Shigella sp. D9]
 gi|331065777|gb|EGI37661.1| flagellar hook-associated protein 3 [Escherichia coli TA271]
 gi|332103749|gb|EGJ07095.1| flagellar hook associated protein [Shigella sp. D9]
          Length = 309

 Score = 43.2 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 109/349 (31%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+    QG  +    ++  G  ++
Sbjct: 123 AALNYQDEDGHYVFGGTINDQPPIVAVDNDGDGVTDSY--SYQGNSDHRQTTVSNGVEVD 180

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +   +      +  L    S  +   +  ++ +D  ++  I++                
Sbjct: 181 TNVAASDFFGSNLDVLNTLNSLSQELQDPNADPADPQVQSDIQN---------------- 224

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                        +  V      +    A LG ++  ++     
Sbjct: 225 ----------------------------AVDVVDTASDDLNASIASLGETQNTMSMLSDA 256

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 257 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 305


>gi|163785038|ref|ZP_02179765.1| hypothetical protein HG1285_05495 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879694|gb|EDP73471.1| hypothetical protein HG1285_05495 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 368

 Score = 43.2 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 65/196 (33%), Gaps = 7/196 (3%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+   IS  + F + + +        +K   ++ +G+               L   +  +
Sbjct: 1   MRVPDISFYNTFLKNDRIK---ENKLLKYTNQLSSGKKILQPSDNAIDSAKSLRLGKIID 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRD 119
            I+    +   V   L T+++ L ++  + Q+    ++ +L  G  D     I     + 
Sbjct: 58  DISTYNRNMDQVQAVLETAESTLGNIVNVSQEARVHIIQVLNTGVMDAEDANILRDYFQS 117

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNG---YFTKDSLAKKSFDQMLQGFLEENSKS 176
                +  AN++     +F G+N+   P N    Y  +    K    + ++     N   
Sbjct: 118 VRNYIIKQANVSVGNSRIFGGVNAQIDPFNTQGIYQGQTLETKVPISKGVELNTTFNGID 177

Query: 177 LLAGQHLEVSSMNAQQ 192
            L      V +     
Sbjct: 178 YLGTIKSGVWNDTNAD 193


>gi|218662349|ref|ZP_03518279.1| putative flagellin protein [Rhizobium etli IE4771]
          Length = 302

 Score = 43.2 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 119/352 (33%), Gaps = 63/352 (17%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T++         + +N +       + TG   D      A  +       +   ++
Sbjct: 2   TSINTNNSAMAALQTLRSINSNLESTQNSVSTGYRVDTASDNAAYWSIATTMRSDNKALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+   + S   +V ++   LV   E   D +K       L++   S
Sbjct: 62  AVSDALGLGAAKVDTAYTAMESAIDVVDEIKAKLVAATEDGVDKSKVQEEISQLQEQLMS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N        +   +S  K         F+ + S ++      
Sbjct: 122 IAQSAS--------FSGEN--------WVAGESGTKSVV----SSFVRDGSGAVSVKMTE 161

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
                ++     F                  S+ S       I+ + GI  +A+ N   +
Sbjct: 162 YALDTSSAGNVLF----------------GMSSGS-------IETSSGILGTADANGDSV 198

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                 ++  T+F +  +            LST++  LS +    A LG     I  +  
Sbjct: 199 -----YSLDITDFTTGQIQS---------ALSTIESALSAMTSAGAQLGSISTRIELQED 244

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+   ++ ID+ + + +  +     ++LS L  + +++      +Q LSI N
Sbjct: 245 FVSALSDSIDSGVGRLVDADMEEESSKLSALQTQQQLA------IQSLSIAN 290


>gi|332187886|ref|ZP_08389619.1| flagellar hook-associated protein 3 [Sphingomonas sp. S17]
 gi|332012047|gb|EGI54119.1| flagellar hook-associated protein 3 [Sphingomonas sp. S17]
          Length = 297

 Score = 43.2 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 226 IKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVL--TKKMLSTVQQGLSG 283
           I D + I+VS     R  +      +     L   L  G  +V    +  +  +      
Sbjct: 164 IADGQSIEVSVGA-ERVFKAGSSDTLNVLNNLVTALKTGTGDVTGTIRDAMDKLSAANDN 222

Query: 284 IIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYM 343
           +   +A +G  E  +  ++   Q       T  S     +  TA  QL   +  ++ +  
Sbjct: 223 VASVQASIGAREARVELQQGLQQQAATDRATLRSTVEDADPTTAITQLQQTMTVLQATQA 282

Query: 344 ITTKLQKLSILNYL 357
             TKL  LS+ +YL
Sbjct: 283 SFTKLSSLSLFDYL 296


>gi|241954820|ref|XP_002420131.1| nuclear pore protein, putative; nucleoporin, putative [Candida
           dubliniensis CD36]
 gi|223643472|emb|CAX42351.1| nuclear pore protein, putative [Candida dubliniensis CD36]
          Length = 1334

 Score = 43.2 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 103 GKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162
           G +       + G    +  +F   +N +  G  LF   N++    +G F   S    + 
Sbjct: 23  GSSSGFGRRASIGGPTTTANTFGNTSNTSGGG--LFGNSNTNTTSGSGLFGNSSNNATNS 80

Query: 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNI 222
              L G    N+ S   G +L  +  +  Q       L    +      N + N +  + 
Sbjct: 81  TGGLFGNSANNTTSNATGSNLFGN--SNNQANTGTTNLFGSTAKPSGTTNLFGNNNATST 138

Query: 223 KYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLS 282
              +  T     + N N             G            +  L     +T+     
Sbjct: 139 TSNLFGTST--SNTNAN-------------GAALG----NSSTQGGLFNN--NTLGSSSG 177

Query: 283 GI-----IEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLIN 336
           G+         ++ G S++        LQ  +N +    +       ++    +S L  
Sbjct: 178 GLFGNSGTSNGSLFGNSQQ-----NNNLQAPSNQLTVNNNN-----PYSYSQVISNLQA 226


>gi|217031520|ref|ZP_03437025.1| hypothetical protein HPB128_21g78 [Helicobacter pylori B128]
 gi|216946720|gb|EEC25316.1| hypothetical protein HPB128_21g78 [Helicobacter pylori B128]
          Length = 157

 Score = 43.2 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 3/142 (2%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  S      +MN     L       + ++ +G    YG Q        L+++ E+N
Sbjct: 1   MRVTFGSKY---NQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEEN 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + + +            +   L    K ++     L+               A  L   
Sbjct: 58  TLDQGIDVAQNAYTSTLNTDKALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERL 117

Query: 121 YESFVTFANMTDEGQYLFSGIN 142
            E  +  AN +  G +    + 
Sbjct: 118 REHMMNVANTSIGGNFYLGAVR 139


>gi|46190574|ref|ZP_00121308.2| COG1511: Predicted membrane protein [Bifidobacterium longum DJO10A]
 gi|189440363|ref|YP_001955444.1| hypothetical protein BLD_1501 [Bifidobacterium longum DJO10A]
 gi|189428798|gb|ACD98946.1| Hypothetical membrane protein [Bifidobacterium longum DJO10A]
          Length = 887

 Score = 42.8 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 74/265 (27%), Gaps = 12/265 (4%)

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
               K   A    + +   K    S   L+  Q   Q     LV  L   + + +    A
Sbjct: 206 LADAKQTTASLRQTVAAAQKASRQSGTLLAETQAGSQAFSTTLVGAL--DSSSAQLSGLA 263

Query: 115 GMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENS 174
             + ++  S     N            N+   PLN   T  S  K +  +   G    + 
Sbjct: 264 VHVNNAAGSITGSFNSAQNSVDTI--TNTLSAPLNATQTSISDLKDALTKAGIGKDTTDP 321

Query: 175 KSLLAGQHLEV--SSMNAQ--QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
                 + ++   S ++ Q  Q+  F        +  +    N S A  +     I    
Sbjct: 322 VGQNIWKQIDALDSLISKQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALN 381

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEF-LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
               S       +  +            + + T  + +    +      Q +  + + + 
Sbjct: 382 TARGSLT--GTVMPSLTSSLNSFAALNGTLDGTLTSLSGTLDQADGLFDQLVDTLNQTKT 439

Query: 290 VLGISEKNINE-ERVFLQNKNNIID 313
            +  ++ ++ +        + +I  
Sbjct: 440 TISSTQDSLRQVASDVATVRTDIAT 464


>gi|218507707|ref|ZP_03505585.1| flagellin C protein [Rhizobium etli Brasil 5]
          Length = 222

 Score = 42.8 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 60/141 (42%), Gaps = 16/141 (11%)

Query: 216 NASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI-GTEFLSKNLTDGARNVLTKKML 274
            +S  N+ + +  T  ID SA +       I  +  +  + F S  ++           L
Sbjct: 85  TSSSGNVLFGMTSTGTIDTSAGIIGTSYGTIGSIYSMDISTFGSVEISM---------AL 135

Query: 275 STVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTL 334
           ++++ GL  + +  + LG     I  +  F+   ++ ID+ + + +  +     ++L+ L
Sbjct: 136 TSIEAGLEAMTKAASQLGSISTRIELQENFVGALSDSIDSGVGRLVDADMEEESSKLTAL 195

Query: 335 INKIEMSYMITTKLQKLSILN 355
             + +++      +Q LSI N
Sbjct: 196 QTQQQLA------IQSLSIAN 210


>gi|186477705|ref|YP_001859175.1| flagellar hook-associated protein FlgL [Burkholderia phymatum
           STM815]
 gi|184194164|gb|ACC72129.1| flagellar hook-associated protein 3 [Burkholderia phymatum STM815]
          Length = 406

 Score = 42.8 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 46/404 (11%), Positives = 122/404 (30%), Gaps = 54/404 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS  F        +      +L++++ +G S              ++   +   +++ 
Sbjct: 3   ISTSQYFGMNVQTMDDQQSTLAQLYQQLSSGVSLATPSDNPVGAAQAVQLSMQGATLSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +   + L +    LSS+  ++  +   LV   +G  ++      A  L+      +
Sbjct: 63  ASNQNTALQALQSEDGSLSSVNTVLTTINTLLVRAGDGSLNDGDRGDIATQLQGIRSQLM 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYF-------------------TKDSLAKKSFDQM 165
             AN TD  G YL++G  +S  P +                      T++     +   +
Sbjct: 123 GLANGTDGSGNYLYAGYQASTPPFSVDASGAVQYNGDNGIQHVQVTGTRNIAIGDTGRDV 182

Query: 166 LQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSNASDHNI 222
             G     S  + AG      S     ++  +    D  +       + +  +       
Sbjct: 183 FLGISPAGSSPVTAGNSSNTGSGTIGNVS--VSNPTDPTNQHKYTINFTSTTTYTITDVT 240

Query: 223 KYRIKDTEG-----------------------------IDVSANVNMRGIRDIMFVAVIG 253
                  +                              +  +A  +     ++  V    
Sbjct: 241 AATTSAPQTYAAGQAITLGGGGQNVTISGAPNAGDSFSVTPAAQSSTDVFANLDKVIAAL 300

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
              +S               ++ +   ++ +   +  +G  E+ I   +   Q  +    
Sbjct: 301 QTSVSGAGGQANLTNALGTAMTQLHNTMNNVTSIQTSVGGREQEIEALQTVTQTNSLQTS 360

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + ++     +  +  ++ +     ++ +    + +QKLS+ +Y+
Sbjct: 361 SNLADLTQTDLTSTISKYTMTQFSLQAAQQGFSMIQKLSLFDYI 404


>gi|261253607|ref|ZP_05946180.1| flagellar hook-associated protein FlgL [Vibrio orientalis CIP
           102891]
 gi|260936998|gb|EEX92987.1| flagellar hook-associated protein FlgL [Vibrio orientalis CIP
           102891]
          Length = 397

 Score = 42.8 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 11/164 (6%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q+K  
Sbjct: 5   ISSFHNYQSVQNDLRRSEAKVHHNQAQLASGKKLMKASDDPLA----THYIQNIGQQKEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + +   +  L   RL   +  +S+ ++   D    ++ ++ G             + +  
Sbjct: 61  LRQYTDAIVLTRNRLEHHEVIISNAEEFTDDAKRTVMEMINGSLSPEDRLAKRREIEELA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
            +F+   N+ D  G Y+F+G     +P   +  KD     + D 
Sbjct: 121 NNFLNLVNVQDESGNYIFAGTKPKNQPF--FRDKDGDVTYAGDD 162


>gi|323191379|gb|EFZ76641.1| flagellar hook-associated protein 3 [Escherichia coli RN587/1]
          Length = 309

 Score = 42.8 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 110/349 (31%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKEILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        ++   ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIQSLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+    QG  +    ++  G  ++
Sbjct: 123 AALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSY--SYQGNSDHRQTTVSNGVEVD 180

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +   +      +  L    S  +   N   + +D  ++  I++                
Sbjct: 181 TNVAASDFFGSNLDVLNTLNSLSQELQNPGVDPADPQVQSDIQN---------------- 224

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                        ++ V      +    A LG ++  ++     
Sbjct: 225 ----------------------------AVNVVDTASDDLNASIASLGETQNTMSMLSDA 256

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 257 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 305


>gi|220905262|ref|YP_002480574.1| flagellar hook-associated protein 3 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869561|gb|ACL49896.1| flagellar hook-associated protein 3 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 512

 Score = 42.8 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 39/87 (44%)

Query: 271 KKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQ 330
           +K L+ ++Q  + I+   A +G  E  ++  +  L  +    +  +S +  ++     A+
Sbjct: 426 QKSLAAIEQAHAHILAYEARIGGLENRVSMAQDVLSFQKLDQEERLSYTEDIDLTELLAK 485

Query: 331 LSTLINKIEMSYMITTKLQKLSILNYL 357
           L+      +     ++ + ++S+  Y+
Sbjct: 486 LTRQQLTYQTVLQSSSMIMQMSLAKYI 512



 Score = 35.8 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 74/225 (32%), Gaps = 16/225 (7%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ SS++  M    ++     ++ +E+  T +  +      A +  +L    + +   + 
Sbjct: 5   VTQSSMYNTMVGQMQKSLSAYMESNEQGSTQKKINRPSDDPAGMYRVLMTRDDISATKQY 64

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L  +   L +        +   +      T  ++  + A   R+ +   +
Sbjct: 65  QSNCDTAKGWLELTDNVLGTQLSNAIISLKSRMEQAATGTTADQRKLIAQEAREIFGQIL 124

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             +N    G+ +F+G       LN Y  + SLA   +D            + ++  H  +
Sbjct: 125 NLSNTQFNGKSIFAGQRYD---LNAY--EQSLALTCWDDTWN--------NEISQGHYSI 171

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWS-NASDHNIKYRIKDT 229
              +   M   I+  +D     +     WS +  D      +   
Sbjct: 172 DGASNTSMM--IQFTDDGTLGTDTLTYRWSKDGGDTWTTSTVPAG 214


>gi|298529919|ref|ZP_07017321.1| flagellar hook-associated protein 3 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509293|gb|EFI33197.1| flagellar hook-associated protein 3 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 645

 Score = 42.8 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 36/88 (40%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            ++ L+ +   L  I  + A +G  E  ++     L    +     +SK   V+     +
Sbjct: 558 IQRSLANIDDTLKHISSELASVGARENRLDVASTVLSGLEHNEKERLSKIEDVDVAELMS 617

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           +L       E     ++ + ++S++N+L
Sbjct: 618 RLMNQQMTYEAVLRSSSMIMQMSLVNHL 645


>gi|313897102|ref|ZP_07830649.1| hypothetical protein HMPREF9162_0260 [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|320530513|ref|ZP_08031571.1| hypothetical protein HMPREF9555_01675 [Selenomonas artemidis F0399]
 gi|312974549|gb|EFR40017.1| hypothetical protein HMPREF9162_0260 [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|320137346|gb|EFW29270.1| hypothetical protein HMPREF9555_01675 [Selenomonas artemidis F0399]
          Length = 448

 Score = 42.8 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 7/133 (5%)

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKF--PINAGMLRDS 120
                S       ++ +Q  LS M+ I +      +       D      P  A  +   
Sbjct: 61  ERYQSSVKAGLSWMNATQNALSGMEDIQKTFKAKTIQAANDDKDEKGGDWPAIAREMMAG 120

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +  V+  N     +Y+FSG     +P   +   DS  K   D+ L   L++   +   G
Sbjct: 121 IQQIVSLGNTQLGDRYIFSGQADLTQP---FSMTDSSHK--VDRGLTKTLDDRQTAFFNG 175

Query: 181 QHLEVSSMNAQQM 193
              E S     QM
Sbjct: 176 VSNEKSGDFLHQM 188



 Score = 40.8 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 30/89 (33%)

Query: 269 LTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
           ++   ++         ++     G   +   +    L N    I   I+     +     
Sbjct: 359 ISSDGVTLADAANQVTLQAHTETGARSRLYTDMTDILTNHKENITKDITDVSSTDVAALA 418

Query: 329 AQLSTLINKIEMSYMITTKLQKLSILNYL 357
            ++      + MS  +  ++  LS+++YL
Sbjct: 419 TKMMQQQTLMSMSLSMGARILPLSLVDYL 447


>gi|332525059|ref|ZP_08401239.1| flagellin-related hook-associated protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332108348|gb|EGJ09572.1| flagellin-related hook-associated protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 308

 Score = 42.8 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 84/283 (29%), Gaps = 50/283 (17%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDE-G 134
           +  +++ L +   ++Q     +V    G    +     A  LR      +  AN  D  G
Sbjct: 73  MLQAESALGNAGDLLQQARELVVQGGNGSYGASNRETLADALRGIRAQLLGVANRGDGAG 132

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
            Y+F+G  +   P     T   +  +  +  +    +E     + G+             
Sbjct: 133 GYVFAGQGADSPPFVD--TPGGVIFRGAEGEISAASDEALPLSVDGRQA----------- 179

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGT 254
                              W  A D +    +     +D                  +  
Sbjct: 180 -------------------WLGARDPSGTGTVSVFTALDT-----------------VIG 203

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
           +    +L++   +   K+ L+ +   ++ ++  RA  G +    +     +        T
Sbjct: 204 KLSDGSLSEAEVSTAVKEGLADIDAVMNNVLTSRAAAGEALNRTDMVESRIAESKLAAKT 263

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             S +  ++   A +         + +    + +Q+ S+  YL
Sbjct: 264 ERSNAEDLDMVQAISDFQNRQTGYDAALKTYSLVQRQSLFQYL 306


>gi|297570284|ref|YP_003691628.1| flagellin hook IN repeat protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926199|gb|ADH87009.1| flagellin hook IN repeat protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 983

 Score = 42.8 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 79/215 (36%), Gaps = 27/215 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           ++  SI+  +     ++N D  ++++++ +G+     SD  + L   +       +   +
Sbjct: 3   VTMQSIYNNILTNLNKVNSDMNRINQQISSGKLMSKISDNPVNLVNALGLRTNLSEIGQY 62

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
                + N+++    S S+  L+  + +V       +               A  +++ +
Sbjct: 63  QRNINYGNTII----SASETALTETKDLVMRAKTLAIQAANAPMTAENRENAAMEVKNLW 118

Query: 122 ESFVTFANMTDEGQYLFSGINS-SEKP----------LNGYFTKDSLAKKSFDQMLQGFL 170
           E  +  AN    G+++F G  +    P          ++GYF   +      D   QG  
Sbjct: 119 EQAIILANSAVNGKHIFGGFRTIGYTPAEPTPFVKGAMDGYFVNGA------DPAPQGIS 172

Query: 171 EENSKSLLAGQHLEVSS--MNAQQMTDFIKQLEDK 203
              +   ++G  L      +N Q +   +++ E  
Sbjct: 173 GPLTSDQISGGTLTTDDLQINGQDLVTLLQEAEYP 207


>gi|270262394|ref|ZP_06190665.1| flagellar hook-associated protein 3 [Serratia odorifera 4Rx13]
 gi|270043078|gb|EFA16171.1| flagellar hook-associated protein 3 [Serratia odorifera 4Rx13]
          Length = 319

 Score = 42.8 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 118/350 (33%), Gaps = 40/350 (11%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++            +K  E++ TG+            +  +   Q ++   + 
Sbjct: 3   MSTSMMYQQNMTGITGNQSLFMKAAEQLSTGKKVSNPSDDPLAASQAVMLAQSQSENTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +   + +S  +  L+     + DM   L++   G   +N     A  L+   +  +
Sbjct: 63  ALARTFARQSVSMEETVLAGATSTISDM-KALIVNAGGTKSDNDRDSLATQLQGLKDQLL 121

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             AN TD  G+++F G  + + P        S++    +  ++  ++ N    +      
Sbjct: 122 NQANSTDGNGRFMFGGFENDKPPFAN--NGGSVSYVGGNTPVEQKVDANRIMTVGHTG-- 177

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
                          +    + +     + S AS  N+   I                  
Sbjct: 178 -------------DTVFMSLTSNPKPEPDGS-ASVSNVFESI------------------ 205

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           DI   A+      + + T    N    K    +    + ++  RA LG ++    +    
Sbjct: 206 DIALKALKTPLDGADDATKQQVNDAMAKANRGLDNSYNKVLSVRAELG-NQLQEMDTLDS 264

Query: 305 LQNKNNIID-TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +    ++I+ T +S  +  +   + +        ++ SY     +Q +S+
Sbjct: 265 IGKDRDMINQTQMSALVDADLTESISSYFMQQAALQASYKTFGDMQGMSL 314


>gi|300817262|ref|ZP_07097480.1| flagellar hook-associated protein 3 [Escherichia coli MS 107-1]
 gi|300530238|gb|EFK51300.1| flagellar hook-associated protein 3 [Escherichia coli MS 107-1]
          Length = 317

 Score = 42.8 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 109/349 (31%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 11  VTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQY 70

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 71  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 130

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+    QG  +    ++  G  ++
Sbjct: 131 AALNYQDEDGHYVFGGTINDQPPIVAVDNDGDGVTDSY--SYQGNSDHRQTTVSNGVEVD 188

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +   +      +  L    S  +   +  ++ +D  ++  I++                
Sbjct: 189 TNVAASDFFGSNLDVLNTLNSLSQELQDPNADPADPQVQSDIQN---------------- 232

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                        +  V      +    A LG ++  ++     
Sbjct: 233 ----------------------------AVDVVDTASDDLNASIASLGETQNTMSMLSDA 264

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 265 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 313


>gi|269961606|ref|ZP_06175968.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833647|gb|EEZ87744.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 396

 Score = 42.8 bits (99), Expect = 0.091,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 123/402 (30%), Gaps = 52/402 (12%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQ 57
             T IS+   ++ +    +          E++ +G+     SD  L        I    Q
Sbjct: 1   MLTRISSFHNYQSVQNDLRRQENKVHHNQEQLASGKQLTKPSDDPLA----THYIQSIGQ 56

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
           ++  + + L +  LV  RL   +  +++ ++   +     + ++ G             L
Sbjct: 57  QEEQLKQYLDAIVLVRNRLENQEVVIANAEQFTDESKRISMEMINGAFSPEDRAAKKREL 116

Query: 118 RDSYESFVTFANMTD-EGQYLFSGINSSEKP-LNGYFTKDSLAKKSFDQMLQGFLEENSK 175
            +   +F+   N  D  G Y+F+G     +P    Y    S+     D   +  +  N +
Sbjct: 117 EEIANNFLALVNTQDESGNYVFAGTKPKSQPFFRDY--DGSVVYTGDDYQRKMKIASNIE 174

Query: 176 SLLAGQHLEVSSMNAQQMTDF-------------IKQLEDKFSDDEYWANNWSNASDHNI 222
             +      + S       DF             + Q      D+  +   + + S+   
Sbjct: 175 LGINYPGNHLFSEIPNPFGDFEPQYDLQEGSELLLGQATSASEDNSNYKVTFVDMSNGKF 234

Query: 223 KYRIKDTEGI---------------------DVSANVNMRGIRDIMFVAVIGTEF----- 256
            Y+++    I                         +       +      +   F     
Sbjct: 235 GYQLEKDGSIVQVDDYSPIDGIQYEGINIQLKGQVSAGDSITLEPRQTFSVFDAFKETMQ 294

Query: 257 -LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
               +++D +      +M    Q     + + R  LG     ++ +    ++ N  +   
Sbjct: 295 WSESSVSDASATAKLHQMTEEFQAAFVHMNKVRTDLGAKLSTLDIQEQNHEDFNLSLAKA 354

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            S    ++   A  + S     ++ S     K + L++ NY+
Sbjct: 355 KSNFEDLDYSKAVIEFSENSRALQASQQAFGKTKDLTLFNYI 396


>gi|152222|gb|AAA26278.1| flagellin B (flaB) [Sinorhizobium meliloti]
          Length = 396

 Score = 42.8 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
              ++S V   L+ +    A LG     I+ +  F+    ++ID  + + +  + +    
Sbjct: 305 LDALISGVDAALTDMTSAAADLGSIAMRIDLQSDFVNKLMDVIDKGVGRLVDADMNEEST 364

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +L  L  + ++       +Q LSI N
Sbjct: 365 RLKALQTQQQLG------IQSLSIAN 384


>gi|307136865|ref|ZP_07496221.1| flagellar hook-associated protein FlgL [Escherichia coli H736]
          Length = 260

 Score = 42.8 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M     +L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNDLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
              N  D +G Y+F G  + + P+
Sbjct: 123 AALNYQDEDGHYVFGGTINDQPPI 146


>gi|209546052|ref|YP_002277942.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209538909|gb|ACI58842.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 302

 Score = 42.8 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 115/352 (32%), Gaps = 63/352 (17%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T++         + +N +       + TG   D      A  +       +   ++
Sbjct: 2   TSINTNNSAMAALQTLRSINSNLETTQNSVSTGYRVDTASDNAAYWSIATTMRSDNKALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+   + S   +V ++   LV   E   D +K       L++   S
Sbjct: 62  AVSDALGLGAAKVDTAYTAMDSAIDVVDEIKSKLVAATEDGVDKSKVQEEISQLQEQLMS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A  +  G+   +G + ++  ++ +    S A       +  ++ + S +      +
Sbjct: 122 IAQSA--SFSGENWVAGADGTKSVVSSFVRDGSGA---VSVKMTDYVLDTSSAGNVLFGM 176

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
              S+   + +  I    D  S D  ++ + +N +   I+  +   E             
Sbjct: 177 SGGSI---ETSTGILGTADA-SGDSVYSLDITNFTTGQIQSALSTIE------------- 219

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                                                LS +    A LG     I+ +  
Sbjct: 220 -----------------------------------SALSAMTSAGAQLGSISTRIDLQED 244

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+   ++ ID+ + + +  +     ++LS L  + +++      +Q LSI N
Sbjct: 245 FVGALSDSIDSGVGRLVDADMEEESSKLSALQTQQQLA------IQSLSIAN 290


>gi|116626182|ref|YP_828338.1| flagellar hook-associated protein 3 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229344|gb|ABJ88053.1| flagellar hook-associated protein 3 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 306

 Score = 42.8 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 33/339 (9%), Positives = 105/339 (30%), Gaps = 49/339 (14%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
              + +   +   ++ +G+  +        + +I++ +    H  +   + ++V    + 
Sbjct: 16  IARVQRSVDEASRQVSSGKRVNVASDDPGNIDTIMQLKTGDTHNQQIQSNLAVVATDANA 75

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +   L+S  K++               D       A  ++   E  V+ +  T +G+Y+F
Sbjct: 76  ADTALTSATKLMDRARTLATQGSNFTMDAGGRQSMAAEVQSLLEQMVSISRTTVQGRYVF 135

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
            G   +  P +   T D+   +  +      +E+ S    A            Q    ++
Sbjct: 136 GGDQDATAPYDLDLTADNGVARLTNATATRRVEDASGGSFAVSK-------GAQEIFDLR 188

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
             +D  +    +A     A +      + + +    + N                     
Sbjct: 189 DSDDNLASGNVFA-----ALNSLRNSLLNNDQTQIAATN--------------------- 222

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
                             +Q     +   +A  G  +  I +   +    +  +   + +
Sbjct: 223 ----------------GALQVASDHLNVSQAFYGTVQNRIQDATNYAAGYSGQLKIQLGQ 266

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +   A   ++    +++ ++ +  K+ + ++ +++
Sbjct: 267 KQDADIAAAALAITQGNTELQAAFSMQAKMPRTTLFDFM 305


>gi|331007441|ref|ZP_08330618.1| Flagellar hook-associated protein flgL [gamma proteobacterium
           IMCC1989]
 gi|330418748|gb|EGG93237.1| Flagellar hook-associated protein flgL [gamma proteobacterium
           IMCC1989]
          Length = 421

 Score = 42.4 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 2/152 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  I+   N    + N   +K  E++ TG+            T I +       + + 
Sbjct: 3   ISTLHIYNLANNSMADANSAIIKTQEQLSTGKRVLTAADDPVAATQIQQLTDNLAQVDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESF 124
             + +     L+  +  L+++  +VQ +    V          +++   A  +       
Sbjct: 63  TKNIATAEHNLAEEETALNNVTNLVQRIKELAVQAGNTASLSESEYDALATEVDSRINEL 122

Query: 125 VTFANM-TDEGQYLFSGINSSEKPLNGYFTKD 155
           V   N     G Y+F+G  S      G     
Sbjct: 123 VGLTNSRNANGDYIFAGYKSQSPAFVGDSVNG 154


>gi|77457734|ref|YP_347239.1| flagellar hook-associated protein FlgL [Pseudomonas fluorescens
           Pf0-1]
 gi|77381737|gb|ABA73250.1| putative flagellar hook-associated protein 3 [Pseudomonas
           fluorescens Pf0-1]
          Length = 523

 Score = 42.4 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  +       +     +V    E  + Q  +           +L+  Q+   + + 
Sbjct: 3   ISTAQYYATQAAQYQRNYSKTVATANEASSLQRINTAADDPIGAGRLLKLGQQAAMLEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L+  ++ L+S+   +       +    G   +      A  L    +  +
Sbjct: 63  KGNIDTTKSSLTVQESTLTSITTALARAKEIGLAANNGIATDTDRKAYAAELTQIQQQVL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  G YLFSG  +   P
Sbjct: 123 GLMNSKDANGNYLFSGSKTDTAP 145



 Score = 37.8 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/108 (11%), Positives = 35/108 (32%)

Query: 248 FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN 307
            V  + T      +         +  L  ++   + I      +G   ++++E+    + 
Sbjct: 414 MVTALNTPIDGDPVAKQKFQGAMESALGNIESAANQIGSAVTSIGARGQSLDEQTTTNET 473

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                 T        +      +L+     ++ S +  +K+ +L + N
Sbjct: 474 LIQANTTTQGSIRDSDPAEVMTRLTLQQTMLQASQLAFSKISQLGLFN 521


>gi|302339107|ref|YP_003804313.1| flagellar hook-associated protein 3 [Spirochaeta smaragdinae DSM
           11293]
 gi|301636292|gb|ADK81719.1| flagellar hook-associated protein 3 [Spirochaeta smaragdinae DSM
           11293]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.100,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 1/106 (0%)

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
           +        L       +    L  +      +IE  + LG  ++ +   R  +  +   
Sbjct: 309 MVMNLRDSLLKGDTIE-IGGSALKGISMAQDNLIETMSGLGSRDERLQLIRQRIAQERPE 367

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           I    S+   V+   A   L+ L    + +     K+ + ++L++L
Sbjct: 368 IVNRDSQETDVDLAEAITDLTALEQSHKAALQTAGKILQPTLLDFL 413


>gi|148546714|ref|YP_001266816.1| flagellar hook-associated protein FlgL [Pseudomonas putida F1]
 gi|148510772|gb|ABQ77632.1| flagellar hook-associated protein 3 [Pseudomonas putida F1]
          Length = 521

 Score = 42.4 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS  +   +   +    +  K  +E   G     G         +L+ +Q++N + + 
Sbjct: 3   ISTSQFYNSNSANYQRSFSNLDKTRQEASDGIRVRRGADDPVGAARLLQLQQQQNMLDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + V   L T+++ L+++  I+Q +    +        +     NA  L    +   
Sbjct: 63  TRNVTNVRNALGTAESTLNAIGTILQRVNELAISSGNAGFTDADRKANATELASLEDQLF 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
           +  N  D  G YLFSG    + P
Sbjct: 123 SLMNSKDESGAYLFSGSKGDKPP 145


>gi|332701539|ref|ZP_08421627.1| flagellar hook-associated protein 3 [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551688|gb|EGJ48732.1| flagellar hook-associated protein 3 [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 492

 Score = 42.4 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 34/88 (38%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
               L  ++     +      +G     +   +  L  + +  +T++S    V++     
Sbjct: 405 IGDSLEKLKSAHEQLTSAAGEIGGRINRVELAQTSLTLEKDRAETFLSAVEDVDEIQLSV 464

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
            L+      +     ++K+ KLS+L+Y+
Sbjct: 465 DLARSEYIYQSVLSTSSKILKLSLLDYM 492


>gi|218887611|ref|YP_002436932.1| flagellar hook-associated protein 3 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758565|gb|ACL09464.1| flagellar hook-associated protein 3 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 507

 Score = 42.4 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 35/91 (38%)

Query: 267 NVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
               ++ L  +      I+   A +G  E  ++  +  L+++ +     +S    V+   
Sbjct: 417 QTGIQQALDELGTASKVILTAAARVGGKENRLDVVQGILESQEDDQTMRMSSIEDVDVAK 476

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              QL+            ++ + ++++ N+L
Sbjct: 477 LMTQLAQQQLTYNSVLKSSSMIMQMNLTNFL 507


>gi|330975983|gb|EGH76049.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 530

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  FE  N   +    +  K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFFESTNTNYQRNYSNLNKTSEEVSSGIKLNTAGDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   + T++  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ETNIGTINTNVVTTETTLTSIIDTMQAAREQIVSAGSGAFTDSDRLAKASALKQYQSQIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+FSG  +S  P
Sbjct: 123 GLMNSQDPNGQYIFSGSKASTPP 145


>gi|190890375|ref|YP_001976917.1| flagellin C protein [Rhizobium etli CIAT 652]
 gi|218516720|ref|ZP_03513560.1| flagellin C protein [Rhizobium etli 8C-3]
 gi|190695654|gb|ACE89739.1| flagellin C protein [Rhizobium etli CIAT 652]
          Length = 342

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 110/343 (32%), Gaps = 45/343 (13%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T  I++++    +++L   +NK++ +  +++ +G   +      +  +       +  +
Sbjct: 23  MTVKITSAAAVNALSVLRS-INKEASQTQQQVSSGYRIETAADDASYWSVATVMRSDSTN 81

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           +     +  L   ++  +   ++S   +V  +   LV   E  TD +K        +D  
Sbjct: 82  LGTVGDALGLGAAKVDATYTAMTSAIDLVTQIRAKLVAAREPGTDKDKINAEISEYKDQL 141

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
           ++ V     +  G+               +      A      ++ GF+  ++       
Sbjct: 142 KTVVES--TSFAGE--------------NWLLNSDKAAPPTWSVISGFVRASTGEY---- 181

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                     Q  DF          +      ++ A D               + N +  
Sbjct: 182 --------QAQSIDFPSSQTILIDKNNASGGLFTKAVDAQ-------------AINNSGT 220

Query: 242 GIRDIMFV---AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           G R+   +   +          +     +     ML      LS +    A +G+ +  I
Sbjct: 221 GPRNYYLLDADSTTPATGTEVAIGKNTTDAQLADMLDVTDSLLSSLTTTSASIGVMKARI 280

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
           +++  +  + ++ ID  +   +  +   A  +   +  + +M+
Sbjct: 281 DDQIDYTADLSDSIDKSVGALVDTDMDEASIRQKAIETQKQMA 323


>gi|295136522|ref|YP_003587198.1| TonB-dependent outer membrane receptor [Zunongwangia profunda
           SM-A87]
 gi|294984537|gb|ADF55002.1| TonB-dependent outer membrane receptor [Zunongwangia profunda
           SM-A87]
          Length = 952

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 73/244 (29%), Gaps = 40/244 (16%)

Query: 95  GPLVILLEGKTDNNKFPINAGMLRDSYESFVTFA----NMTDEGQY------LFSG---- 140
             L        D   F  +          F        N+   G+Y      + +G    
Sbjct: 496 ASLEGTSPTSFDAGGFSFSQNTTNLDVSQFFPQLFEGFNVAFGGEYRLENYNIIAGEEKS 555

Query: 141 -----------INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN 189
                       N+S++P   +F     A+    Q+  GF  +N+ S         +   
Sbjct: 556 YAQYTADGTVITNASQQPTTDFF---GNARAGGAQVFPGFSPDNAISRQRNSVAAYADFE 612

Query: 190 AQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMF- 248
           A    D +     +F   E +++  S   +  +  R K T+ I++ A VN  G R     
Sbjct: 613 ADVTKDLLLTFAGRF---ENYSDFGSTL-NFKVASRYKLTDNINLRAAVN-TGFRAPSLH 667

Query: 249 --VAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGI---IEQRAVLGISEKNINEERV 303
                  +   +           +    +    G+  +     + A LGI+   I +  +
Sbjct: 668 QIYYNSTSTVFNDEGNPVQVGTFSNDSRAAKLLGIPDLKEETSKSASLGIT-AKIPDANL 726

Query: 304 FLQN 307
            +  
Sbjct: 727 TITA 730


>gi|17380397|sp|P13119|FLAB2_RHIME RecName: Full=Flagellin B
 gi|12057230|gb|AAB81423.2| FlaB [Sinorhizobium meliloti]
          Length = 395

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 267 NVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
                 ++S V   L+ +    A LG     I+ +  F+   ++ ID+ + + +  + + 
Sbjct: 302 AAALDALISGVDAALTDMTSAAADLGSIAMRIDLQSDFVNKLSDSIDSGVGRLVDADMNE 361

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILN 355
              +L  L  + +++      +Q LSI N
Sbjct: 362 ESTRLKALQTQQQLA------IQSLSIAN 384


>gi|119389099|pdb|2D4X|A Chain A, Crystal Structure Of A 26k Fragment Of Hap3 (Flgl)
          Length = 248

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 5/136 (3%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
            +  +   Q +   ++   + +  T+++S  ++ LS +   +Q     +V    G   ++
Sbjct: 8   ASQAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDD 67

Query: 109 KFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFD 163
                A  L+   +  +  AN TD  G+Y+F+G  +   P +    GY   +    +  D
Sbjct: 68  DRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQQVD 127

Query: 164 QMLQGFLEENSKSLLA 179
                 +      +  
Sbjct: 128 SARTMVIGHTGAQIFN 143


>gi|331640720|ref|ZP_08341867.1| bacterial flagellin N-terminus subfamily [Escherichia coli H736]
 gi|331040094|gb|EGI12302.1| bacterial flagellin N-terminus subfamily [Escherichia coli H736]
          Length = 268

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 1/144 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M     +L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 11  VTTQQTYVSMTQSFNDLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQY 70

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 71  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 130

Query: 126 TFANMTD-EGQYLFSGINSSEKPL 148
              N  D +G Y+F G  + + P+
Sbjct: 131 AALNYQDEDGHYVFGGTINDQPPI 154


>gi|146294543|ref|YP_001184967.1| flagellar hook-associated protein 3 [Shewanella putrefaciens CN-32]
 gi|145566233|gb|ABP77168.1| flagellar hook-associated protein 3 [Shewanella putrefaciens CN-32]
          Length = 305

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 70/197 (35%), Gaps = 12/197 (6%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
            V  +++ +++   + + + +   ++  +S S+ +LSSM +  Q M    +         
Sbjct: 45  GVVRVMDNQRDLALVQQYIKNIDSLSTSMSRSETYLSSMVETQQRMKEISIATNSSNLSA 104

Query: 108 NKFPINAGMLRDSYESFVTFAN-MTDEGQYLFSGINSSEKPL-----NGYFTKDSLAKKS 161
                 A  + +  +  V   N   + G YLFSG    + P+       Y  +    +++
Sbjct: 105 EDRASYASEMEELLKGLVDNINATDESGNYLFSGNVIDKIPVVKDATGRYVYQGDANQRT 164

Query: 162 FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHN 221
                  +   N  +           +  Q M D+I  L+D        A  +S A++  
Sbjct: 165 VQTSNSSWTTANVTAEQLLFSNAGQDILNQTM-DYISVLKDPSLSPSDPA--FSAAANGI 221

Query: 222 IKYRIKDTEGIDVSANV 238
              +   +E +D     
Sbjct: 222 ---QTALSETLDSIGAA 235


>gi|78067829|ref|YP_370598.1| flagellar hook-associated protein FlgL [Burkholderia sp. 383]
 gi|77968574|gb|ABB09954.1| Flagellin-like protein [Burkholderia sp. 383]
          Length = 413

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 44/368 (11%), Positives = 102/368 (27%), Gaps = 57/368 (15%)

Query: 47  ARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTD 106
           A     ++       +++   + +     L      L ++  ++ +    LV   +G   
Sbjct: 44  AGAAQAVQLSMASATLSQYATNQNAALASLQAEDQTLQNVSTVLTNTQSLLVRAGDGSMS 103

Query: 107 NNKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTK----------- 154
           ++     A  L+   +  +T AN  D  G YLF+G  +S  P +   +            
Sbjct: 104 DSDRSALATQLQGYRDQLMTLANTNDGAGNYLFAGTKNSAAPFSTTPSGSVAYVGDTGTR 163

Query: 155 -----DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY 209
                DS      D     F+   +            +     +           ++   
Sbjct: 164 QVQITDSSTVSQGDTGAAVFMSVPAIGSSPVPSARAGNTGTGTIGAVTVTNPSIATNGHQ 223

Query: 210 WANNW---------------------SNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM- 247
           ++  +                     + A  ++    I    G+ V+ +           
Sbjct: 224 FSITFGGTAAAPTYTVTDNSVSPPTTTPAQAYSSGSAISLGSGMTVAVSGTPAAGDKFAV 283

Query: 248 ------------------FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
                              VA + T      +             + +   L  +   +A
Sbjct: 284 EPAPQASGGSDVFSTLDAMVAALKTPVTGNPVAAATLKNALMTGSTKLGNTLRNVTTIQA 343

Query: 290 VLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQ 349
            +G  E+ +   +   Q  +  + + +S        +  +Q   + N +  S     +LQ
Sbjct: 344 SVGGREQEVKAMQAVNQTASLQVTSNLSDLTSTNMVSTISQFLQMQNALTGSQKAYAQLQ 403

Query: 350 KLSILNYL 357
            LS+  Y+
Sbjct: 404 NLSLFQYI 411


>gi|218135313|ref|ZP_03464117.1| hypothetical protein BACPEC_03218 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990698|gb|EEC56709.1| hypothetical protein BACPEC_03218 [Bacteroides pectinophilus ATCC
           43243]
          Length = 325

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 61/203 (30%), Gaps = 11/203 (5%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+ T  +T  I   +             L  +M T +  +   +        L      N
Sbjct: 1   MRIT--NTMMINNSL-ANIAVNKNQLSTLDTQMSTKKKINRPSEDPIIAIRALRLRSSLN 57

Query: 61  HIAERLHSN-SLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
            + + L  N       +   Q  L   + +V D+               +    A  L++
Sbjct: 58  EVTQYLEKNIPDANSWMKVIQGALEEGENVVSDLYKNCNQGATDSYSTEQRATLADDLQN 117

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
             E++    N+   G+Y+FSG  +  +           ++   D       +  +     
Sbjct: 118 LKETYYDQGNVDYAGRYVFSGYRTDSR-------LTFASEAEADNYSYSITQGLTADNFD 170

Query: 180 GQHLEVSSMNAQQMTDFIKQLED 202
            +++  + ++   +  +I     
Sbjct: 171 TKYVYSNPVDVTDLESYINSTAA 193


>gi|26991069|ref|NP_746494.1| flagellar hook-associated protein FlgL [Pseudomonas putida KT2440]
 gi|24986103|gb|AAN69958.1|AE016634_7 flagellar hook-associated protein FlgL [Pseudomonas putida KT2440]
          Length = 521

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  +E       +   +  K+ E++ +                +L  +Q+   + + 
Sbjct: 3   ISTAQFYETSATSYSQNYSNLAKITEQVTSKSRIQSAGDDPVGAARLLVLQQQSALLEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + V   L   ++ LS++   +Q      +    G   +      A  +++   +  
Sbjct: 63  SGNMTTVKNALLQEESVLSTINDALQRASELAIQAGNGGLSDADRTSIASEIKEIEANVF 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  G Y+F G  SS  P
Sbjct: 123 GLLNSRDANGDYMFGGSKSSTPP 145


>gi|94266405|ref|ZP_01290101.1| Flagellin hook IN [delta proteobacterium MLMS-1]
 gi|93452977|gb|EAT03473.1| Flagellin hook IN [delta proteobacterium MLMS-1]
          Length = 683

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/95 (10%), Positives = 33/95 (34%)

Query: 263 DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322
              +    +K ++ +    + +  Q +  G     I  +     N        +S+    
Sbjct: 589 SQIQASALQKSITELDTLHNELTNQISDFGARANRIEVQNNIYMNLKLATSENLSELEDT 648

Query: 323 EQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +   A  +L       + +    ++  ++S++++L
Sbjct: 649 DLVEAIMELKAKETAYQAALSSASRTMQMSLVDFL 683


>gi|66046699|ref|YP_236540.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257406|gb|AAY38502.1| Flagellin, N-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 530

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  FE  N   +    +  K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFFESTNTNYQRNYSNLNKTSEEVSSGIKLNTAGDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   + T++  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ETNIGTINTNVVTTETTLTSIIDTMQAAREQIVSAGSGAFTDSDRLAKASALKQYQSQIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+FSG  +S  P
Sbjct: 123 GLMNSQDPNGQYIFSGSKASTPP 145


>gi|213416584|ref|ZP_03349728.1| flagellar hook-associated protein FlgL [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 236

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 79/270 (29%), Gaps = 40/270 (14%)

Query: 85  SMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINS 143
            +   +Q     +V    G   ++     A  L+   +  +  AN TD  G+Y+F+G  +
Sbjct: 1   QVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYKT 60

Query: 144 SEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDK 203
              P +         +KS  Q             +      V      Q+ + I      
Sbjct: 61  EAAPFDQATGGYHGGEKSVTQ------------QVDSARTMVIGHTGAQIFNSITSNAVP 108

Query: 204 FSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTD 263
             D      N     D  I                           A + T     ++  
Sbjct: 109 EPDGSDSEKNLFVMLDTAI---------------------------AALKTPVEGNDVEK 141

Query: 264 GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
                   K    ++  L+ ++  RA LG     ++       ++       +S  + V+
Sbjct: 142 EKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMSNLVDVD 201

Query: 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            ++  +        ++ SY   T +Q +S+
Sbjct: 202 WNSVISSYVMQQAALQASYKTFTDMQGMSL 231


>gi|307318920|ref|ZP_07598351.1| flagellin domain protein [Sinorhizobium meliloti AK83]
 gi|306895334|gb|EFN26089.1| flagellin domain protein [Sinorhizobium meliloti AK83]
          Length = 395

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 267 NVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
                 ++S V   L+ +    A LG     I+ +  F+   ++ ID+ + + +  + + 
Sbjct: 302 AAALDALISGVDAALTDMTSAAADLGSIAMRIDLQSDFVNKLSDSIDSGVGRLVDADMNE 361

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILN 355
              +L  L  + +++      +Q LSI N
Sbjct: 362 ESTRLKALQTQQQLA------IQSLSIAN 384


>gi|229160703|ref|ZP_04288695.1| Flagellar hook-associated protein 3 [Bacillus cereus R309803]
 gi|228622718|gb|EEK79552.1| Flagellar hook-associated protein 3 [Bacillus cereus R309803]
          Length = 287

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 54/164 (32%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS ++  L  + K +       +  L G     +       +    +  V
Sbjct: 63  QKDIADSKNVLSQTENTLQGIVKSLTRADQLTIQALNGTNSEKELKAIGTEVDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF 169
             AN  ++G+YLF G ++ + P     T     K    ++  G+
Sbjct: 123 YLANTKEQGRYLFGGDSAEKPPFADDGTYQGGEKDVMWKLNDGY 166


>gi|149377472|ref|ZP_01895214.1| Ribulose-5-phosphate 4-epimerase [Marinobacter algicola DG893]
 gi|149358239|gb|EDM46719.1| Ribulose-5-phosphate 4-epimerase [Marinobacter algicola DG893]
          Length = 208

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 210 WANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVL 269
           +   WS A+  N   RI D E I V+ +   +G   ++   V+  +     +   AR+  
Sbjct: 22  YGQGWSPATSSNYSARI-DDEHIAVTVSGRHKG--KLVAGDVMVVDLAGNPIQSDARSSA 78

Query: 270 TKKMLSTVQQG---LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
             ++ + + Q    +  ++   +V       +      L  +   +    S   GV+ H 
Sbjct: 79  ETRLHTVLYQAFPDVGAVLHTHSVKATVLSRLLPAGEPLTLQGYELQKAFS---GVDTHE 135

Query: 327 AHAQL 331
           +   +
Sbjct: 136 SQLTV 140


>gi|330899412|gb|EGH30831.1| flagellar hook-associated protein FlgL [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 530

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  FE  N   +    +  K  EE+ +G   +           +L+  Q+ + + + 
Sbjct: 3   ISTTQFFESTNTNYQRNYSNLNKTSEEVSSGIKLNTAGDDPVGAARVLQLAQQNSMLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   +   + T++  L+S+   +Q     +V    G   ++     A  L+      +
Sbjct: 63  ETNIGTINTNVVTTETTLTSIIDTMQAAREQIVSAGSGAFTDSDRLAKASALKQYQSQIL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
              N  D  GQY+FSG  +S  P
Sbjct: 123 GLMNSQDPNGQYIFSGSKASTPP 145


>gi|1620510|gb|AAB17053.1| laminin-5 alpha 3 chain [Rattus norvegicus]
          Length = 1725

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 100/343 (29%), Gaps = 49/343 (14%)

Query: 10  SIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQ------LGARVTSILEWEQEKNHI- 62
           +I + +N    +L      L E    G+ +  GL       LGA    + E +  K ++ 
Sbjct: 414 NIRDSLNDYEAKLQDLRSVLQEAAAQGKQA-TGLNHENEGVLGAIQRQMKEMDSLKKYLT 472

Query: 63  -------AERLHSNSLVTKRLSTSQAHLSSMQKI---VQDMVGPLVILLEGKTDNNKFPI 112
                  A  L +NSL+ +R+ TSQ    S+       +  +   V  L           
Sbjct: 473 EHLATADASLLQTNSLL-QRMDTSQKEYESLAAALNGARQELNDQVRELSRSGGKAPLVA 531

Query: 113 NAGMLRDSYESFVTFA-----NMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ 167
            A     S +           N +          + S + +    T       +      
Sbjct: 532 EAEKHAQSLQELAKQLEEIKRNTSG---------DESVRCVVDAATAYESILNAIRAAED 582

Query: 168 GFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIK 227
              + +S S  A Q +    +  ++        E+  ++ +          +  +    +
Sbjct: 583 AAGKADSASESAFQTVIKEDL-PRRAKTLSSDSEELLNEAKMTRKRLQQEINPALNSLQQ 641

Query: 228 DTEGIDVS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGI 284
             + + V     + N+  +R+ +     G +    +        + +K      + L G+
Sbjct: 642 TLKTVSVQKDLLDANVTAVRNDLR----GIQRGDIDSVVSGAKSMVRKANGITSEVLDGL 697

Query: 285 IEQRAVLGISE-----KNINEERVFL---QNKNNIIDTYISKS 319
              +  LG  +         +    L    N    +   +   
Sbjct: 698 SPIQTDLGRIKDSYGSTRHEDFNKALIDANNSVKKLTKKLPDL 740


>gi|90408067|ref|ZP_01216238.1| flagellar hook-associated protein 3 [Psychromonas sp. CNPT3]
 gi|90310824|gb|EAS38938.1| flagellar hook-associated protein 3 [Psychromonas sp. CNPT3]
          Length = 501

 Score = 42.0 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 1/145 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS+   F+R          +  + +  + T +    G      + +I   +Q+ +   + 
Sbjct: 3   ISSQVFFQRNTQSVFNNQSELSEKNIHLSTQKRVINGSDDAVAIATIQRLKQDLSMADQH 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +  +     +     L+    I+Q M   +V         +     A  L+   E  +
Sbjct: 63  VQNGEMAETANALESISLAQSTNILQRMRELMVSSGNATYSADGREAIATELKHLREELI 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN 149
             AN  D   QY+FSG      P  
Sbjct: 123 GVANTKDGNSQYIFSGFEVDTLPFQ 147


>gi|302878283|ref|YP_003846847.1| flagellar hook-associated protein 3 [Gallionella capsiferriformans
           ES-2]
 gi|302581072|gb|ADL55083.1| flagellar hook-associated protein 3 [Gallionella capsiferriformans
           ES-2]
          Length = 401

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 1/149 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS+++IF+             V+  +++ +G+            T  L+  Q      ++
Sbjct: 3   ISSNTIFDNNVATLGAQQARLVQTQQQIASGRRLLTAASDPVAATRALDVTQADAINTQQ 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   V   LS S++ L+S+  ++QD+    V        N         L    +  +
Sbjct: 63  TANRGTVKDPLSISESTLASVTLLLQDVRTAAVAAGNATLTNTDRATIGKNLNGRLQELI 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFT 153
             AN TD  G  L++G  S   P      
Sbjct: 123 GLANSTDGSGNALYAGFQSKTTPFVASTA 151


>gi|78222344|ref|YP_384091.1| Phage tail sheath protein [Geobacter metallireducens GS-15]
 gi|78193599|gb|ABB31366.1| Phage tail sheath protein [Geobacter metallireducens GS-15]
          Length = 638

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 14/178 (7%)

Query: 29  LHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV---TKRLSTSQAHLSS 85
             E   T   +D    + A+V   +            +  N LV     RL+TS A ++ 
Sbjct: 234 ATEFSATSTLADVAGIIQAQVRGAVVANPAVRDFTCAVDGNQLVLTSGTRLTTSSAVVTG 293

Query: 86  MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
                      L+ L    T+           + S ++ ++          L  G N SE
Sbjct: 294 PGDATDASTTLLLGLANDGTE--------RTGQQSLDAMLSGIAGQVS---LAGGTNGSE 342

Query: 146 KPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDK 203
              N Y    +  +K  D  +     +   S      ++ +  +A++M   +  ++  
Sbjct: 343 PDKNAYDDIFAAFEKVRDISILCLPGQAWDSTTEQSIIDAAVAHAEKMRSRMVIIDPP 400


>gi|47566122|ref|ZP_00237160.1| flagellar hook-associated protein flgL, putative [Bacillus cereus
           G9241]
 gi|47557039|gb|EAL15369.1| flagellar hook-associated protein flgL, putative [Bacillus cereus
           G9241]
          Length = 287

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS ++  L  + K +  +    +  L G     +       +    E  V
Sbjct: 63  QKDIADSRNVLSQTENTLQGIVKSLTRVDQLTIQALNGTNSEKELKSIGTEIDQILEHVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLN 149
             AN  ++G+YLF G ++ + P  
Sbjct: 123 YLANTKEQGRYLFGGDSADKPPFT 146



 Score = 35.8 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 36/79 (45%)

Query: 279 QGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI 338
           + L G+I +   +G +   ++  +  L  +N  +     +   V+   A ++L+ +    
Sbjct: 209 KNLDGVINRTTEVGSTMNTVDTFKTILSEQNLALQENRKEIEDVDLAAAISELAYINATY 268

Query: 339 EMSYMITTKLQKLSILNYL 357
           E +    + + K SIL+Y+
Sbjct: 269 EATLKAVSTMSKTSILDYM 287


>gi|70729011|ref|YP_258745.1| flagellar hook-associated protein FlgL [Pseudomonas fluorescens
           Pf-5]
 gi|68343310|gb|AAY90916.1| flagellar hook-associated protein FlgL [Pseudomonas fluorescens
           Pf-5]
          Length = 522

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 2/231 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ISTS  +E      ++     V+  EE  +                +L+  Q+ + + + 
Sbjct: 3   ISTSQFYESSATNYQKNFSKVVQSSEEASSLVRVKTAADDPVGAARLLQLGQQASLLDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + +   L  +++ ++S+  ++                +     NA  L    E  +
Sbjct: 63  KTNTNSIKASLGQTESVMTSINNVLARAKELASGAGNAGYTDADRQANASELGQIEEQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           +  N  D  G+Y+F G      P +   +  + +       LQ  + +           +
Sbjct: 123 SLMNSQDENGKYIFGGSKDDVPPFSR-NSDGTYSYNGDQSSLQLPVGDTMMMAANSTGWD 181

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
           V           +        D     +N   A++     + +  E   VS
Sbjct: 182 VFQQALNTSRSQVTMTAPAVDDGRISLSNGQVANNGAYNSQFRSGEPYTVS 232


>gi|329901237|ref|ZP_08272762.1| Flagellar hook-associated protein flgL [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549169|gb|EGF33761.1| Flagellar hook-associated protein flgL [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 413

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 53/410 (12%), Positives = 124/410 (30%), Gaps = 58/410 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST++ +E  +    +L   + +   ++ +G+             + L   Q  +   + 
Sbjct: 3   ISTAAFYENASTRISDLQSATAQKQTQIASGKRILTPADDPVAAAAALTVSQAIDVNTQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       LS  ++ LS+   ++Q++    +    G  D+++    A  L   Y+  +
Sbjct: 63  AANRGTAKDALSLQESVLSNYTTLLQNVKTLTIAAGNGALDDSQRQYMASELAGRYQELM 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSL--------------------------- 157
             AN  D  G Y+F G  ++  P        +                            
Sbjct: 123 GIANSRDSTGNYIFGGFKNTLAPFTDVAGTTATYNGDQGQRLLQVSTSRQLSINDAGSAI 182

Query: 158 --AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT------DFIKQLEDK------ 203
               KS D  +    +  + +   G     +  +A Q+       DF             
Sbjct: 183 FQNIKSGDDSVSVTPDAGNSATATGAISAATVTDATQLKHHNYSIDFTTSAALPPVTSYK 242

Query: 204 ---FSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN-------------MRGIRDIM 247
               + D         A+++    +    +G+  SA+                   + I 
Sbjct: 243 VFDLTTDPKKTGTPVAAANYTTDPQTIAFDGLQFSASGTPASGDKYNINPNAQSIFKTIG 302

Query: 248 FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN 307
            +        +                + +   L   +  RA  G   + ++       N
Sbjct: 303 DLITALNTPATGVTGKANLTASLSAANTNITAALDTTLNVRAAGGARLQELDTLDNEGDN 362

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++    + +S    ++   A ++L+     ++ +     K+  LS+ NY+
Sbjct: 363 RSLQYASTLSNLQDLDYAKAVSELTQNQLTLQAAQQSFVKIANLSLFNYI 412


>gi|297182076|gb|ADI18249.1| hypothetical protein [uncultured Chromatiales bacterium
           HF0200_41F04]
          Length = 744

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 31/103 (30%), Gaps = 6/103 (5%)

Query: 1   MKTTGISTSSI------FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILE 54
           M    +S S++                  +    L  E  T + ++ G +LG  +  + +
Sbjct: 1   MLVILVSFSALAVKPSPTSDPLAAIGNAQRLLSTLDSEATTSRYAEVGRELGRTIDGVRD 60

Query: 55  WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPL 97
            +     +       S +  R +     L  +    +  +  L
Sbjct: 61  GKATIEQLTTMREITSELRNRTTARLTALEVVAGEDEAALETL 103


>gi|149015650|gb|EDL75009.1| similar to Laminin alpha-3 chain precursor (Nicein alpha subunit),
            isoform CRA_a [Rattus norvegicus]
          Length = 1993

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 101/347 (29%), Gaps = 57/347 (16%)

Query: 10   SIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQ------LGARVTSILEWEQEKNHI- 62
            +I + +N    +L      L E    G+ +  GL       LGA    + E +  KN + 
Sbjct: 682  NIRDSLNDYEAKLQDLRSVLQEAAAQGKQA-TGLNHENEGVLGAIQRQMKEMDSLKNDLT 740

Query: 63   -------AERLHSNSLVTKRLSTSQAHLSSMQKI---VQDMVGPLVILLEGKTDNNKFPI 112
                   A  L +NSL+ +R+ TSQ    S+       +  +   V  L           
Sbjct: 741  EHLATADASLLQTNSLL-QRMDTSQKEYESLAAALNGARQELNDQVRELSRSGGKAPLVA 799

Query: 113  NAGMLRDSYESFVTFA-----NMTDEGQYLFSGINSSEK------PLNGYFTKDSLAKKS 161
             A     S +           N +   + +   ++++         +         A  +
Sbjct: 800  EAEKHAQSLQELAKQLEEIKRNTS-GDELVRCAVDAATAYESILNAIRAAEDAAGKAASA 858

Query: 162  FDQMLQGFLEENSKSLLAGQHLEVSS-MNAQQMTDFIKQLEDKFSDDEYWANNWSNASDH 220
             +   Q  ++E+          +    +N  +M         +   +   A N    S  
Sbjct: 859  SESAFQTVIKEDLPRRAKTLSSDSEELLNEAKM------TRKRLQQEINPALN----SLQ 908

Query: 221  NIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG 280
                 +   + +    + N+  +R+ +     G +    +        + +K      + 
Sbjct: 909  QTLKTVSVQKDL---LDANVTAVRNDLR----GIQRGDIDSVVSGAKSMVRKANGITSEV 961

Query: 281  LSGIIEQRAVLGISE-----KNINEERVFL---QNKNNIIDTYISKS 319
            L G+   +  LG  +         +    L    N    +   +   
Sbjct: 962  LDGLSPIQTDLGRIKDSYGSTRHEDFNKALIDANNSVKKLTKKLPDL 1008


>gi|78358191|ref|YP_389640.1| flagellar hook-associated protein FlgL [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220596|gb|ABB39945.1| flagellar hook-associated protein FlgL, putative [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 504

 Score = 42.0 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
               ++ +      I +   +    T  L+T+   L+ +  ++  + G       G  D 
Sbjct: 45  GAARVMGYRDSLAAIKQYRSNVDTATSWLATADQTLTQVNTVLTRIKGLAEQAATGTLDA 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ 167
           N     +  LR  YE  +  AN   EG+++F+G  + +           L   + D    
Sbjct: 105 NNREQISFELRQQYEQLINLANTRVEGRHIFAGHKTDQPAFV-----QGLNVSTIDTAFS 159

Query: 168 G 168
           G
Sbjct: 160 G 160



 Score = 39.3 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 34/91 (37%)

Query: 267 NVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
               ++ L+ +      ++ Q A +G  E  ++  +  L        + +S    V+   
Sbjct: 414 QAGIQRSLAALDDVGQHVMTQVASIGGRENRLDVAKNVLTTAELDDKSRMSDIEDVDVAE 473

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              +L+            ++ + ++++ NYL
Sbjct: 474 LMTRLAQQQLIYNSVLKSSSMIMQMNLTNYL 504


>gi|300869688|ref|YP_003784559.1| flagellar hook-associated protein FlgL [Brachyspira pilosicoli
           95/1000]
 gi|300687387|gb|ADK30058.1| flagellar hook-associated protein, FlgL [Brachyspira pilosicoli
           95/1000]
          Length = 417

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 36/102 (35%), Gaps = 1/102 (0%)

Query: 256 FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
                L D  R  +  + L  +   +  ++  +A        ++      +++   ID  
Sbjct: 316 LRDAMLNDDVR-AIGSEALGYIDSAIDNVLTVQANASSKVTRLDMGYNSFEDQKLAIDEA 374

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++K+  ++        +        +   T +L   ++L+Y+
Sbjct: 375 LAKNENIDYAEEIVNFNMWQYAHNATLQTTGRLLGRTLLDYM 416



 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++  + + R     K+   +       + TGQ      +      + + +   K+ +   
Sbjct: 3   VTEQAQYNRAISSIKKNYSEMEASQTRLSTGQRVQRPHENVTSTINSIYYRTRKSSLDRY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
            ++     +RLS +   +SS+ + +       V               A  + +  E   
Sbjct: 63  QNNIVDGKERLSVAHDSMSSITQALSRARDLAVQGANSTYSAEDRAKMAMEVEEMIERIY 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162
             +    +G+++FSG +    P    +  D  A +S 
Sbjct: 123 DISKTQSKGEFIFSGTSVKTAPFRALYGHDEKAGRSI 159


>gi|323181554|gb|EFZ66974.1| flagellar hook-associated protein 3 [Escherichia coli 1357]
          Length = 298

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 105/340 (30%), Gaps = 47/340 (13%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           M      L+ D   + E+M TG+            T I +  ++++ I +   +    + 
Sbjct: 1   MTQSFNNLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQYQSNIDSASA 60

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-E 133
            LS  ++ L  +   +  +   L+    G    +        +    ES V   N  D +
Sbjct: 61  GLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMVAALNYQDED 120

Query: 134 GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQM 193
           G Y+F G  + + P+            S+    QG  +    ++  G  ++ +   +   
Sbjct: 121 GHYVFGGTINDQPPIVAVDNDGDGVTDSY--SYQGNSDHRQTTVSNGVEVDTNVAASDFF 178

Query: 194 TDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIG 253
              +  L    S  +   +  ++ +D  ++  I++                         
Sbjct: 179 GSNLDVLNTLNSLSQELQDPNADPADPQVQSDIQN------------------------- 213

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
                               +  V      +    A LG ++  ++       + +   D
Sbjct: 214 -------------------AVDVVDTASDDLNASIASLGETQNTMSMLSDAQTDISTSND 254

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             I     ++   A    + L   +E +    +K+ +L++
Sbjct: 255 ELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 294


>gi|312962288|ref|ZP_07776779.1| flagellar hook-associated protein FlgL [Pseudomonas fluorescens
           WH6]
 gi|311283215|gb|EFQ61805.1| flagellar hook-associated protein FlgL [Pseudomonas fluorescens
           WH6]
          Length = 527

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST   F+  +   ++     VK  ++  TG               +L  +Q+K+ + + 
Sbjct: 3   ISTQQYFDTSSTKYQDNYSGVVKAQDQASTGVRVQTASDDPVAAAQLLMLQQQKDMLGQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + + +   L+  ++ LSS+   +Q   G  +     +  N+     A  +    +  +
Sbjct: 63  NGNITTLQNSLNNEESVLSSISLAMQTASGLALQAGNLQMSNDDRKAIAAQVGALEDHVL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKP 147
              N  D  G Y+FSG  +   P
Sbjct: 123 GLLNSKDSSGNYMFSGAKTDTPP 145


>gi|222084873|ref|YP_002543402.1| flagellin C protein [Agrobacterium radiobacter K84]
 gi|221722321|gb|ACM25477.1| flagellin C protein [Agrobacterium radiobacter K84]
          Length = 327

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 111/355 (31%), Gaps = 64/355 (18%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           + T+ I+ +S    +  L   ++ +       + +G          A  +     + + +
Sbjct: 26  LMTSIITNNSAMAALQTLKG-ISSNLQDTQNAVSSGLRISKASDNAAYWSISTSMKSDDS 84

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            +     +  L   ++ T+   ++S   +V  +   LV  +EG  D +      G L+  
Sbjct: 85  ALGAVSDALGLGAAKVDTASTAVTSAIDVVGQIKDKLVTAMEGSVDKDAVQEEIGQLQAQ 144

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
            +S    A  +  G+      +     +   F + +    S       F    + ++L G
Sbjct: 145 LQSVAQSA--SFNGENWVMAASGDSASVVSSFIRGTNGTVSVSTTSYAFDTGATGNVLFG 202

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
                                                          ++  ID +     
Sbjct: 203 ----------------------------------------------SNSGTIDTA----- 211

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
            GI   +  +         ++T G         L  VQ  L+ +    + LG     I+ 
Sbjct: 212 SGILGTVSGSYSVFSLDISSMTTGQ----ISSALDMVQTALNSLTSMGSKLGSISSRIDL 267

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           +  F  + ++ I + + K +  +     ++LS L  + +++      +Q LSI N
Sbjct: 268 QTSFASSLSDSIQSGVGKLVDADMEEESSKLSALQTQQQLA------IQSLSIAN 316


>gi|222147578|ref|YP_002548535.1| flagella associated protein [Agrobacterium vitis S4]
 gi|221734566|gb|ACM35529.1| flagella associated protein [Agrobacterium vitis S4]
          Length = 320

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 112/352 (31%), Gaps = 44/352 (12%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + ++         + +G          A  +       +   ++
Sbjct: 2   TSIMTNNSAISALSTLRTISSQMETTQSAISSGYKVKDASDNAAYWSIATTMRSDNKAMS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  +   +  T+   + +   +V D+   LV   E   D +K       L++   S
Sbjct: 62  AVQDALGVGAAKTDTAYTGMEAAIGVVSDIKAKLVAAREPGVDKDKINKELTELKNQLSS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A  +  G+               +   +S +  +  +M+  F+  N        ++
Sbjct: 122 VAKSA--SFNGE--------------NWLYDNSDSTGTTQEMVGSFVRGN------DGNV 159

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            + ++        +   E     D       + A+          +  +  S   N    
Sbjct: 160 SIKTITFDTTNSILINDEA---GDGGLLTKGTVATYAYGTTTTTASYYLISSVAGN---- 212

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                     +      LT    +     M+++V + LS + +  A +G ++  I  +  
Sbjct: 213 ---------TSSASEVTLTSSTTDDEIDGMVASVDKMLSSMTDAAATIGATKSRIESQSS 263

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F ++ ++ ID  I K +  + +    +L  L  + ++       +Q LSI N
Sbjct: 264 FAKDLSDTIDVGIGKLVDADMNEESTKLKALQTQQQLG------IQALSIAN 309


>gi|314991314|ref|ZP_07856793.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594087|gb|EFR72932.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN------KFPINAGMLRDSYESF 124
           L   R+   +  + + ++I+      +++LL    D           +   +++ + ++ 
Sbjct: 52  LTDIRMPK-KTGIDAAKEILAKFPKAILLLLTTFKDEEYIREAFSIGVKGYLIKQNLQAI 110

Query: 125 VTFANMTDEGQYLFSG--INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQH 182
           +        GQ +F    I +  + +    T DS A  SF +     ++E +      + 
Sbjct: 111 IPSVKSAYNGQAVFGNEIIETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEI 170

Query: 183 LEVSSMNAQQMTDFIKQLEDKF 204
            +   ++   + ++I QL +K 
Sbjct: 171 ADALYLSDGTVRNYISQLLEKL 192


>gi|121607554|ref|YP_995361.1| flagellar hook-associated protein 3 [Verminephrobacter eiseniae
           EF01-2]
 gi|121552194|gb|ABM56343.1| flagellar hook-associated protein 3 [Verminephrobacter eiseniae
           EF01-2]
          Length = 417

 Score = 42.0 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 81/262 (30%), Gaps = 23/262 (8%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI 62
            T + T+++++               L E + +G+     ++      S  + E+  N +
Sbjct: 5   ITRLGTANMYDSALRNLGTRQSQLANLQESLTSGKRV---VRASDDPVSAAQAERALNRL 61

Query: 63  AERL-HSNSLVTKR--LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
           A       +L  +R  ++  ++ L     +VQ+    +V   +           A  L+ 
Sbjct: 62  ARIQSDQRALAAQRNAIALGESALGDAVDLVQNFRALVVSAGDASLQPADRATIANQLQS 121

Query: 120 SYESFVTFANMTD-EGQYLFSGINSSEKPLN-------GY-FTKDSLAKKSFDQMLQGFL 170
             E  +  AN  D  G  L S + S++ P          Y F        S    +   L
Sbjct: 122 LREQLLQVANRKDTNGVALLSALGSAQTPFAGPLGGAPDYRFAGQPGQSASAGARIAATL 181

Query: 171 EENSKSLLAGQHLEVSSMNAQQMTDF-------IKQLEDKFSDDEYWANNWSNASDHNIK 223
           + ++  +   +   V +     +          +     +    + +   +S A      
Sbjct: 182 DGDAAFMFDPRRDGVYTATVSPIPTGRQLTTSAVTPTAPRLVTGDDYRITFSAAGPGATP 241

Query: 224 YRIKDTEGI-DVSANVNMRGIR 244
                +  I + S       +R
Sbjct: 242 GTSSASYTITNSSTGAVSAPVR 263


>gi|118581856|ref|YP_903106.1| flagellar hook-associated protein 3 [Pelobacter propionicus DSM
           2379]
 gi|118504566|gb|ABL01049.1| flagellar hook-associated protein 3 [Pelobacter propionicus DSM
           2379]
          Length = 295

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 33/84 (39%)

Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
            + +  G + I  Q+  +      ++     L+     ++  IS +   +      +LS 
Sbjct: 212 TADLDTGFNQITNQQTEVASRITRLDGAANMLKITKTTLENIISDTQLADTTKLAVELSL 271

Query: 334 LINKIEMSYMITTKLQKLSILNYL 357
                + S   T K+  LS+L+YL
Sbjct: 272 QETAYKASLSATAKILNLSLLDYL 295



 Score = 40.5 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 33/101 (32%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
            + +L        + +   + S     LS +   L  +   +      +  +  G +D  
Sbjct: 46  TSLLLSTNDRLQAVEQYGSNISKTNTWLSMTSTALQGISDTLTTAKSLMSTIGSGTSDQT 105

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLN 149
                   L    E    F N     QYLFSG  ++ KP +
Sbjct: 106 ARESVVAQLTALREQLADFGNTKYLDQYLFSGSQTATKPFD 146


>gi|218678948|ref|ZP_03526845.1| flagellin domain protein [Rhizobium etli CIAT 894]
          Length = 296

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 115/352 (32%), Gaps = 63/352 (17%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T++         + +N +       + TG   D      A  +       +   ++
Sbjct: 2   TSINTNNSAMAALQTLRSINSNLETTQNSVSTGYRVDTASDNAAYWSIATTMRSDNKALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+   + S   +V ++   LV   E   D +K       L++   S
Sbjct: 62  AVSDALGLGAAKVDTAYTAMDSAIDVVDEIKSKLVAATEDGVDKSKVQEEISQLQEQLMS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A  +  G+   +G + ++  ++ +    S A       +  ++ + S +      +
Sbjct: 122 IAQSA--SFSGENWVAGADGTKNVVSSFVRDGSGA---VSVKMTDYVLDTSSAGNVLFGM 176

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
              S+   + +  I    D  + D  ++ + +N +   I+  +   E             
Sbjct: 177 SGGSI---ETSTGILGTADA-NGDSVYSLDITNFTTGQIQSALSTIE------------- 219

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                                                LS +    A LG     I+ +  
Sbjct: 220 -----------------------------------SALSAMTSAGAQLGSISTRIDLQED 244

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+   ++ ID+ + + +  +     ++LS L  + +++      +Q LSI N
Sbjct: 245 FVGALSDSIDSGVGRLVDADMEEESSKLSALQTQQQLA------IQSLSIAN 290


>gi|70908057|emb|CAJ17008.1| hypothetical protein Tb11.0330 [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 603

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 54/184 (29%), Gaps = 17/184 (9%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
            +R+ +  +E       L E +  G+    G++L  R +      QE   I       + 
Sbjct: 242 TDRLRVAQREGLTRIQVLEERLKEGRLHAVGMELALRSS-----SQELEAIQALNERKAA 296

Query: 72  VTKRLSTSQA-HLSSMQKIVQDMVGPL-VILLEGKTDNNKFPINAGMLRDSYESFVTFAN 129
           + +RL  S    L  M++  +       ++        +        +    E   +  N
Sbjct: 297 MYERLDKSCTFALKQMREAAETCEKVQHMLFFRSAEAASTDSSVFRFISCELEKISSALN 356

Query: 130 MTDEGQYL-----FSGINSSEKP---LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            +    ++       G+ S E P   +            +  Q     + +   + +   
Sbjct: 357 AS--SAFVRDDMDTKGMASDEAPRCTVAPTAAVPQPPMAAVPQPPMAAVPQPPMAAVPQP 414

Query: 182 HLEV 185
            +  
Sbjct: 415 PMAA 418


>gi|170694401|ref|ZP_02885555.1| flagellar hook-associated protein 3 [Burkholderia graminis C4D1M]
 gi|170140824|gb|EDT08998.1| flagellar hook-associated protein 3 [Burkholderia graminis C4D1M]
          Length = 407

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 49/404 (12%), Positives = 122/404 (30%), Gaps = 52/404 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IS++  F        +      +L+ ++ +G S              ++       +A+ 
Sbjct: 3   ISSTQYFTMNVATMSDQQAQLSQLYAQISSGVSLSTPSDNPLGAAQAVQLSSTATTLAQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     L      L S+  ++Q +   ++   +G  +N      A  L+      +
Sbjct: 63  TSNQNTALASLQLESTTLGSVTDVLQKVHTLVLNAGDGALNNGDRGSIATELQSLRSQLM 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTK----------------DSLAKKSFDQMLQG 168
           T AN TD +G YLF+G  SS +P N                     DS   ++ D     
Sbjct: 123 TLANATDPQGNYLFAGYQSSAQPYNTNSAGVVTYSGDTGIPAVQITDSHLVQTSDNGTSI 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKD 228
           F         +      ++     +           +++  ++ N+S+++ + +      
Sbjct: 183 FSSVAPIGTSSVPAGAAANTGTGVIGTVSLNNPTDPTNNNTYSINFSSSTTYTVSQTDPA 242

Query: 229 TEGIDVS--------------------------------ANVNMRGIRDIMFVAVIGTEF 256
           T  +  S                                       +     ++ + +  
Sbjct: 243 TGAVTTSGPQAFTAGSAITLGGQSVTISGAPNAGDSFSVTPATQGSMDVFANLSQLISTL 302

Query: 257 LSK---NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
            S      +  +        ++ ++  ++ ++   A +G   + +   +   QN      
Sbjct: 303 QSPISGGASTASYQSALVTSMTQLENTINNVVTATATVGGRSQEVQALQKVTQNNTLQTA 362

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + +S     +      + +   N  + +     K+Q  S+  YL
Sbjct: 363 SNLSDLTQTDMIKTVGKYTLAQNAFDTAQQAFVKIQNFSLFQYL 406


>gi|120597312|ref|YP_961886.1| flagellar hook-associated protein 3 [Shewanella sp. W3-18-1]
 gi|120557405|gb|ABM23332.1| flagellar hook-associated protein 3 [Shewanella sp. W3-18-1]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 70/197 (35%), Gaps = 12/197 (6%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
            V  +++ +++   + + + +   ++  +S S+ +LSSM +  Q M    +         
Sbjct: 45  GVVRVMDNQRDLALVQQYIKNIDSLSTSMSRSETYLSSMVETQQRMKEISIATNSSNLSV 104

Query: 108 NKFPINAGMLRDSYESFVTFAN-MTDEGQYLFSGINSSEKPL-----NGYFTKDSLAKKS 161
                 A  + +  +  V   N   + G YLFSG    + P+       Y  +    +++
Sbjct: 105 EDRASYASEMEELLKGLVDNINATDESGNYLFSGNVIDKIPVVKDATGRYVYQGDANQRT 164

Query: 162 FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHN 221
                  +   N  +           +  Q M D+I  L+D        A  +S A++  
Sbjct: 165 VQTSNSSWTTANVTAEQLLFSNAGQDILNQTM-DYISVLKDPSLSPSDPA--FSAAANGI 221

Query: 222 IKYRIKDTEGIDVSANV 238
              +   +E +D     
Sbjct: 222 ---QTALSETLDSIGAA 235


>gi|163856442|ref|YP_001630740.1| flagellar hook-associated protein 3 [Bordetella petrii DSM 12804]
 gi|163260170|emb|CAP42472.1| flagellar hook-associated protein 3 [Bordetella petrii]
          Length = 405

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 60/406 (14%), Positives = 130/406 (32%), Gaps = 66/406 (16%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           +ST+ I++       +      +L E++ +G+     +D  L      +  +   Q  + 
Sbjct: 3   LSTALIYQNGLNGILKQESTLSRLQEQLASGRRVLTPADDPLA----ASLAVNVSQTSSM 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
            A    + +   + L      LSS+   +Q ++  +V      +D ++  +    L  S 
Sbjct: 59  NATYASNRNTAKQTLGLESNALSSVVTTLQSVLQRVVQAGGTLSDPDRQALV-TELEASR 117

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPLN-------GYFTKDSLAKKSFDQMLQGFLEEN 173
           +  V  AN TD  GQYLFSG      P+         Y   +       DQ  Q     +
Sbjct: 118 DQLVGLANSTDGNGQYLFSGHQGFSAPVTLDADGNVSYGGDNGQRLIQVDQSRQ-MAGSD 176

Query: 174 SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNA---------------- 217
             S + G+    S     +  +       +FS   +     S A                
Sbjct: 177 VISDIFGKASAGSKAYIVEANEANTGT-GQFSSVSFDTTTGSGANQDFIVTFSDVGGVLH 235

Query: 218 -------SDHNIKYRIKDTEGID---VSANVNMRG---------------IRDIMFVAVI 252
                  S   +     + + ID   +S +V+ +                +     +  +
Sbjct: 236 YTTDTVPSSAPVTAPYVEGQTIDLGGISFSVSGQPAVGDSYTIETPKASNMDMFETLDTL 295

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQ----GLSGIIEQRAVLGISEKNINEERVFLQNK 308
                     D A        L+T  +     L  ++  +A +G     + +    + ++
Sbjct: 296 IDTLGRSTTNDPAAVAAINNALATANKKLNLTLDNVLTVQASVGARLNEL-DALDAVGSQ 354

Query: 309 NNI-IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             +     +S    V+ ++  ++L      ++ +    + +Q  S+
Sbjct: 355 RTLSYTKQLSNLEDVDVYSVTSELLLRKVALDAASSSFSIIQGSSL 400


>gi|149191160|ref|ZP_01869418.1| flagellar hook-associated protein [Vibrio shilonii AK1]
 gi|148834998|gb|EDL51977.1| flagellar hook-associated protein [Vibrio shilonii AK1]
          Length = 294

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 97/288 (33%), Gaps = 10/288 (3%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ S     M     + N    K+ E+M TG   ++          +   ++  +   + 
Sbjct: 3   VTDSQFNAVMQRSLMDNNIRLNKVFEQMSTGLKLNHLSDDPIAAVRLEGLKKTVSDNQQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   V  +L+  + ++++++++ Q +   L+    G  D          L+      +
Sbjct: 63  QRNIENVQSQLTRYETNVNTLEELSQQVNELLLQGKNGTLDAQSRAGIVLELKSLKTEML 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
           T  N  +EG YLFSG + + + +    T       S     +  + ++          ++
Sbjct: 123 TTLNQANEGSYLFSGTDITNQAI---STTPPYTLNSNSDYRETKVGDDQYVPSNLTITDI 179

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
              NA         L++  ++ E     ++ A D  +       + + VS          
Sbjct: 180 IGTNA-----IFTDLDNAIAELEVPTAGFTPALDSALDTNQALHQNLLVSLTDIGSQYNA 234

Query: 246 I--MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVL 291
           +  +    I   F ++ +      +   +    + QG+  +   +   
Sbjct: 235 LDRLKETSIDMVFFAETVRSELEELDYAQASVELNQGMIALEATQKTF 282


>gi|310764853|gb|ADP09803.1| Flagellar hook-associated protein 3, FlgL [Erwinia sp. Ejp617]
          Length = 302

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 38/316 (12%), Positives = 91/316 (28%), Gaps = 69/316 (21%)

Query: 47  ARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKI-VQDMVGPLVILLEGKT 105
                 +  +     +     + S     +    + LSS+ K+  +++   LV  + G  
Sbjct: 44  GGAADAVILQNALAKMELYKDARSGARSGMEQEDSTLSSVGKLLTKNLSEKLVAAMNGTL 103

Query: 106 DNNKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
                 +    +    ++ +  AN  D  G+Y+FSG  +     +               
Sbjct: 104 SEEDRAVLGQEIEGISKNLLDLANTRDGSGRYVFSGFKTGTAAFDE-------------- 149

Query: 165 MLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY 224
                 + N +      H  V+  +  Q++     +    +  + + N  S AS      
Sbjct: 150 ------QGNYQGGDTAIHQTVADGSDMQISHLGSDIFMSGTGSDLFKNLQSAAS------ 197

Query: 225 RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGI 284
                                         E     + +    +        V  G+  +
Sbjct: 198 ------------------------------ELTKSPIDEEQLKLALGAASKAVDAGIDRL 227

Query: 285 IEQRAVLGISEKNINEERVFLQNKNNI-IDTYISKSIGVEQHTAHAQLSTLINK------ 337
            + +A LG   + +      L  + +   ++ + K           Q++ +         
Sbjct: 228 GKVQADLGTQLQQL----DALDIQADNDFNSTVGKLQSALGADTSTQINLIQQTKMAEVV 283

Query: 338 IEMSYMITTKLQKLSI 353
           +E S  +   +QK+S+
Sbjct: 284 MEASMKVFQSMQKMSL 299


>gi|228933023|ref|ZP_04095886.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826624|gb|EEM72395.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 66/204 (32%), Gaps = 2/204 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ + +  +     +     +    ++ + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLFMSEDPLAASKSFAIQHSLANMEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K V       V  L G     +       +    +  V
Sbjct: 63  QKDIADSKNVLTQTETALQGVLKSVTRADQLAVQALNGPNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             AN  ++G+Y+F G +  + P     T          Q+  G+  +  ++  A     +
Sbjct: 123 YLANTKEQGRYIFGGDSIEKPPFTEDGTYQGGPNDVNWQLNDGYEVKAFRNGEALLSPVI 182

Query: 186 SSMN--AQQMTDFIKQLEDKFSDD 207
            ++   ++ M    ++       +
Sbjct: 183 KTLKQMSEAMQKGDQKALQPLLGE 206


>gi|190890374|ref|YP_001976916.1| flagellin C protein [Rhizobium etli CIAT 652]
 gi|190695653|gb|ACE89738.1| flagellin C protein [Rhizobium etli CIAT 652]
 gi|327193049|gb|EGE59961.1| flagellin C protein [Rhizobium etli CNPAF512]
          Length = 303

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 60/141 (42%), Gaps = 16/141 (11%)

Query: 216 NASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI-GTEFLSKNLTDGARNVLTKKML 274
            +S  N+ + +  T  ID SA +       I  +  +  + F S  ++           L
Sbjct: 166 TSSSGNVLFGMTSTGTIDTSAGIIGTSYGTIGSIYSMDISTFGSVEISM---------AL 216

Query: 275 STVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTL 334
           ++++ GL  + +  + LG     I  +  F+   ++ ID+ + + +  +     ++L+ L
Sbjct: 217 TSIEAGLEAMTKAASQLGSISTRIELQENFVGALSDSIDSGVGRLVDADMEEESSKLTAL 276

Query: 335 INKIEMSYMITTKLQKLSILN 355
             + +++      +Q LSI N
Sbjct: 277 QTQQQLA------IQSLSIAN 291


>gi|323171071|gb|EFZ56720.1| flagellar hook-associated protein 3 [Escherichia coli LT-68]
          Length = 298

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 96/342 (28%), Gaps = 51/342 (14%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           M      L+ D   + E+M TG+            T I +  ++++ I +   +    + 
Sbjct: 1   MTQSFNNLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQYQSNIDSASA 60

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-E 133
            LS  ++ L  +   +  +   L+    G    +        +    ES V   N  D +
Sbjct: 61  GLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMVAALNYQDED 120

Query: 134 GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQM 193
           G Y+F G  + + P+            S+        + NS          V        
Sbjct: 121 GHYVFGGTINDQPPIVAVDNDGDGVTDSYS------YQGNSDHRQTTVSNGVEVDTNVAA 174

Query: 194 TDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIG 253
           +DF     D  +                                              + 
Sbjct: 175 SDFFGSNLDVLNTLNS------------------------------------------LS 192

Query: 254 TEFLSKNLTDGARNVLTK--KMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
            E    N+      V +     +  V      +    A LG ++  ++       + +  
Sbjct: 193 QELQDPNVDPADPQVQSDIQNAVDVVDTASDDLNASIASLGETQNTMSMLSDAQTDISTS 252

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 253 NDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 294


>gi|303248232|ref|ZP_07334495.1| flagellar hook-associated protein 3 [Desulfovibrio fructosovorans
           JJ]
 gi|302490370|gb|EFL50281.1| flagellar hook-associated protein 3 [Desulfovibrio fructosovorans
           JJ]
          Length = 507

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 60/195 (30%), Gaps = 7/195 (3%)

Query: 24  KDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83
              +  +E+  T +  +           +L    + + + +   + +     L+ + + L
Sbjct: 23  ARLMATNEQASTQKRINAPSDDPNGAVQVLGTRTDLSQLGQYQSNITSAKGWLNQADSTL 82

Query: 84  SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS 143
           SS   ++  +         G          A  +R  +   ++ AN T  G  +F+G  +
Sbjct: 83  SSTSTLITTIKSYAEQAATGTVTQENRNEIATQIRQYFGQLISLANTTYNGDSIFAGQKT 142

Query: 144 SEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDK 203
           +          +S      D      +  +    ++G   E   +  Q M       +  
Sbjct: 143 NTAAYTQGLWMNSN-----DATFDAAVSASGGFAISGGSDETVLV--QFMGTDPTNYQPA 195

Query: 204 FSDDEYWANNWSNAS 218
           F         W+N +
Sbjct: 196 FQYSSDGGTTWNNGT 210


>gi|218663822|ref|ZP_03519752.1| flagellin C protein [Rhizobium etli IE4771]
          Length = 353

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 50/376 (13%), Positives = 113/376 (30%), Gaps = 56/376 (14%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T+ I+ +     +  L   +N    K  +++ +G   +      A  +       +K  
Sbjct: 1   MTSIITNNGAMAALQTLRA-VNSGLEKTQQQVSSGLRVEKASDNAAYWSIATTMRSDKKA 59

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQK----------IVQDMVGPLVILLEGKTD--NNK 109
           ++    S       L T+   +  +++            Q +  P        TD   + 
Sbjct: 60  MSAVSDSIGFAKAVLDTTYDGMDKIREELVTIRNLVITAQSLPPPATDGYSNWTDYQPDA 119

Query: 110 FPINAGMLR---------DSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKD-SLAK 159
               + + +             S V  A+        F G+N      N     D   AK
Sbjct: 120 IYDRSQIAKVDADIYQHWQQISSIVDSAS--------FGGVNLLR---NDASEPDLPGAK 168

Query: 160 KSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASD 219
             F                    +         + +        + D   W  N      
Sbjct: 169 TEFTTGYVDGQVLTVSIDTKDTTMINYGRTVDNLWNQPGSENMGYVDGVIWNANI----- 223

Query: 220 HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQ 279
                 I     +D    V   G    +  + +       +     RN     M++ + +
Sbjct: 224 ------IFPITYVDGGGVVQKNGNIYTLRNSEVRIAANGLD-----RNEYYNGMINQLDE 272

Query: 280 GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIE 339
            +  ++   +V+G ++K ++ +  F Q+  + +D  + + +  +   A A+LS    + +
Sbjct: 273 RIQAVVGGMSVVGSTQKRVDMQDEFNQSMMDDVDKGVGRLVDADMEEASAKLSATQTQQQ 332

Query: 340 MSYMITTKLQKLSILN 355
           ++      +Q L+I N
Sbjct: 333 LA------IQALNIAN 342


>gi|23092322|gb|AAN08647.1| FlgL [Aeromonas hydrophila]
          Length = 402

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 45/401 (11%), Positives = 119/401 (29%), Gaps = 51/401 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+T+ ++ R        N+     +E++ +G       +  + ++  +   +E +   + 
Sbjct: 3   ITTNMVYNRNISSLNNANERLSTAYEQLQSGDKFKTSGEDPSGMSQKMALTKEIDLFKQY 62

Query: 66  LHSNSLVTKRL---STSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
             + SL+   L    T    L++     Q ++        G  D          L+    
Sbjct: 63  GVNGSLLENSLGHEETVLTALNTAMTSAQTLIQKANDSAVGSDDRKAIASELEGLQKQMF 122

Query: 123 SFVTFANMTDEGQYLFSGINSSEKPLNGYFT----------------KDSLAKKSFDQML 166
             +   N    G+++F G  S  +P     +                  ++   + D   
Sbjct: 123 DLMNSKNSQ--GEFIFGGNQSKTQPFVQDASGNYLFQGDTGQRNIQVSPTVQIAANDSGF 180

Query: 167 QGF--LEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY 224
             F  +     S     +++V   +      F +   D       +    +  +    + 
Sbjct: 181 NLFEIVPTRRTSSAGSANIQVGVADQGNFDSFYRNNYDPALASNQYTVTTAAGAPDTYEI 240

Query: 225 RIKDTEGIDVS--ANVNMRGIRDIMFVAVIGTEFLSKN--LTDGARNVLTKKMLSTVQQG 280
           R      +        N      +     +     ++N  L     N +   M   +   
Sbjct: 241 RDGGGALLQSGDYVAGNKIPFNGLELTLDLPAGGAAQNFVLDSPQNNNILDGMSDFITAL 300

Query: 281 LS----------GIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG--------- 321
                        + +  + +  +  N+++    +  + N ++  +  + G         
Sbjct: 301 RDPNISAHDFQVKVADATSHMKNARLNVDQGLGEIGGRMNSLEQVLGSNEGLSTLNHQAR 360

Query: 322 -----VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                 + +   A LS     +  S +  +K+ KL++ +Y+
Sbjct: 361 AKVSEADLYEVIAALSKEDAALSASQLSFSKISKLTLFDYI 401


>gi|307313512|ref|ZP_07593133.1| flagellar hook-associated protein 3 [Escherichia coli W]
 gi|306906680|gb|EFN37191.1| flagellar hook-associated protein 3 [Escherichia coli W]
 gi|315059549|gb|ADT73876.1| flagellar hook-filament junction protein [Escherichia coli W]
 gi|323379892|gb|ADX52160.1| flagellar hook-associated protein 3 [Escherichia coli KO11]
          Length = 309

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 109/349 (31%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+    QG  +    ++  G  ++
Sbjct: 123 AALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSY--SYQGNSDHRQTTVSNGVEVD 180

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +   +      +  L    S  +   +  ++ +D  ++  I++                
Sbjct: 181 TNVAASDFFGSNLDVLNTLNSLSQELQDPNADPADPQVQSDIQN---------------- 224

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                        +  V      +    A LG ++  ++     
Sbjct: 225 ----------------------------AVDVVDTASDDLNASIASLGETQNTMSMLSDA 256

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 257 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 305


>gi|254445413|ref|ZP_05058889.1| Bacterial flagellin N-terminus domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198259721|gb|EDY84029.1| Bacterial flagellin N-terminus domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 277

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 12/169 (7%)

Query: 191 QQMTDFIKQLEDKFSDDEYWANNWS-NASDHNIKYRIKDTEGIDVSANVNMR-------- 241
            Q+ D I    +  +    W  + S      N          +      N          
Sbjct: 99  DQLRDIIGNGPNGTNSAPNWNISGSEPTGSFNGISLFGARPDLKAVVGANGDQTMNIGQV 158

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
            +R+I           S +      +V +   + T+ + +  + + RA LG  +  +   
Sbjct: 159 NLREIGGALSDLLWDNSVDSGQADISVDSSTAMDTLIEAVQQVADNRATLGAVQSRLEIV 218

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
              LQ ++  +    S+   V+      +L+     ++     T  L +
Sbjct: 219 DAQLQVQSENLTAANSRIRDVDVAEESTRLAKYQILVQSG---TAMLSQ 264


>gi|153834456|ref|ZP_01987123.1| flagellar hook-associated protein 3 [Vibrio harveyi HY01]
 gi|148869152|gb|EDL68184.1| flagellar hook-associated protein 3 [Vibrio harveyi HY01]
          Length = 396

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 9/152 (5%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQ 57
             T IS+   ++ +    +          E++ +G+     SD  L        I    Q
Sbjct: 1   MLTRISSFHNYQSVQNDLRRQENKVHHNQEQLASGKQLTKPSDDPLA----THYIQSIGQ 56

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
           ++  + + L +  LV  RL   +  +++ ++ V +     + ++ G             L
Sbjct: 57  QEEQLRQYLDAIVLVRNRLENQEVVVANAEQFVDESKRISMEMINGAFSPEDRAAKKREL 116

Query: 118 RDSYESFVTFANMTD-EGQYLFSGINSSEKPL 148
            +   +F+  AN  D  G Y+F+G     +P 
Sbjct: 117 EEIANNFMALANSQDESGNYVFAGTKPKSQPF 148


>gi|238919266|ref|YP_002932781.1| flagellar hook-associated protein 3, [Edwardsiella ictaluri 93-146]
 gi|238868835|gb|ACR68546.1| flagellar hook-associated protein 3, putative [Edwardsiella
           ictaluri 93-146]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 111/356 (31%), Gaps = 56/356 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           +S+S I+++      +   +  ++  ++ +G+     SD  L      + ++   Q K+ 
Sbjct: 3   LSSSMIYQQNMNGVLDAQSEWQRVGAQLDSGKKVINPSDDPLA----ASQLVGLNQSKSM 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDS 120
             +   +     +  S  ++ L  +  ++Q+    LV  +  G   +      A  L   
Sbjct: 59  NEQYGMARGYARESTSMEESVLQQVTNVLQNATPVLVDGMSSGTKSDEDRAAIATQLSSM 118

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
               +  AN TD  G+Y+F+G  S+ +P                       E + +    
Sbjct: 119 RNQLLNLANSTDGNGRYIFAGYKSNAEPF--------------------VKEASGEIKYV 158

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
           G    ++       T  +    D     +    +   A    I       + +D + +  
Sbjct: 159 GGKKALTQQVDAARTMIVSHTGDHVFKSDNGKKDIFAALQKAIT---ALNQPLDKATDA- 214

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
                                           +  + ++  L  + + RA LG     ++
Sbjct: 215 ----------------------DKAKVAQALNEANTGLRASLDNVSKVRAELGTQLNELD 252

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                 +       T IS    V    A +  +     ++ SY + T +Q +S+  
Sbjct: 253 SLDAIGEENAITFKTRISGLQDVNWTQAISDYTFRQVSLQASYKVFTDMQGMSLFK 308


>gi|225871952|ref|YP_002753406.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196]
 gi|225792213|gb|ACO32303.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196]
          Length = 298

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 1/196 (0%)

Query: 13  ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV 72
             +     +      +L EE+  G S        + V   +      +   +   + S  
Sbjct: 9   NNVAAAIDQTTSVQQQLTEELSNGTSIQQLSDNPSAVGENVSLNSAISSDVQYQQTASSA 68

Query: 73  TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
              L  + + L S+   +   +        G  + +     A  L    +  ++ AN + 
Sbjct: 69  QGMLQVTDSALGSVVTQLTSAISLATEGNNGTLNPSNEQAIATQLSGIRDEVLSLANTSY 128

Query: 133 EGQYLFSG-INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ 191
            GQY+FSG +N+    LN   +  ++       +      +     L     +V + +  
Sbjct: 129 LGQYVFSGSVNTEPFTLNSSTSPATVTYNGDSAVNTMTTPDGQSISLNLPGNQVFTASGG 188

Query: 192 QMTDFIKQLEDKFSDD 207
            +   + QL   +S +
Sbjct: 189 NVLGSLNQLISDYSSN 204


>gi|203284103|ref|YP_002221843.1| flagellar hook-associated protein 3 [Borrelia duttonii Ly]
 gi|201083546|gb|ACH93137.1| flagellar hook-associated protein 3 [Borrelia duttonii Ly]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 43/99 (43%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            NL +    ++  + L+ + + LS I+   A LG  E  +      L  +   +   + +
Sbjct: 325 DNLEENREGLIGSRNLAEIDESLSKILSTLADLGTKENRLELSYARLSKEIMDMKDDMVQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  ++ ++ + ++L++L
Sbjct: 385 YTDLDVTKAITDLNMTSLAYQVSLGVSARIMQTTLLDFL 423


>gi|238917954|ref|YP_002931471.1| flagellar hook-associated protein 3 FlgL [Eubacterium eligens ATCC
           27750]
 gi|238873314|gb|ACR73024.1| flagellar hook-associated protein 3 FlgL [Eubacterium eligens ATCC
           27750]
          Length = 515

 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 7/153 (4%)

Query: 199 QLEDKFSDDEYWANNWSN----ASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGT 254
                  DD    NN S+     +   I   + D   + +    N   +  I   A+   
Sbjct: 353 NTVGTIFDDSN--NNGSSVAGAGTAKTINQEVTDVGTMSIHVGANQDQVIVIDIPAITTY 410

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
              + NL          + +STV Q ++   E R+ LG  E   +     L   N  +  
Sbjct: 411 TLGTDNLNVMTHYT-ASQAISTVDQAITRTNEIRSKLGAYENRFDHTTNNLDVSNENLTK 469

Query: 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTK 347
            +S  I  +        ++     + +  I  +
Sbjct: 470 SLSTMIDTDMAEEMTTYTSETVLTQAATSILAQ 502


>gi|149015651|gb|EDL75010.1| similar to Laminin alpha-3 chain precursor (Nicein alpha subunit),
           isoform CRA_b [Rattus norvegicus]
          Length = 1725

 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 101/347 (29%), Gaps = 57/347 (16%)

Query: 10  SIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQ------LGARVTSILEWEQEKNHI- 62
           +I + +N    +L      L E    G+ +  GL       LGA    + E +  KN + 
Sbjct: 414 NIRDSLNDYEAKLQDLRSVLQEAAAQGKQA-TGLNHENEGVLGAIQRQMKEMDSLKNDLT 472

Query: 63  -------AERLHSNSLVTKRLSTSQAHLSSMQKI---VQDMVGPLVILLEGKTDNNKFPI 112
                  A  L +NSL+ +R+ TSQ    S+       +  +   V  L           
Sbjct: 473 EHLATADASLLQTNSLL-QRMDTSQKEYESLAAALNGARQELNDQVRELSRSGGKAPLVA 531

Query: 113 NAGMLRDSYESFVTFA-----NMTDEGQYLFSGINSSEK------PLNGYFTKDSLAKKS 161
            A     S +           N +   + +   ++++         +         A  +
Sbjct: 532 EAEKHAQSLQELAKQLEEIKRNTS-GDELVRCAVDAATAYESILNAIRAAEDAAGKAASA 590

Query: 162 FDQMLQGFLEENSKSLLAGQHLEVSS-MNAQQMTDFIKQLEDKFSDDEYWANNWSNASDH 220
            +   Q  ++E+          +    +N  +M         +   +   A N    S  
Sbjct: 591 SESAFQTVIKEDLPRRAKTLSSDSEELLNEAKM------TRKRLQQEINPALN----SLQ 640

Query: 221 NIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG 280
                +   + +    + N+  +R+ +     G +    +        + +K      + 
Sbjct: 641 QTLKTVSVQKDL---LDANVTAVRNDLR----GIQRGDIDSVVSGAKSMVRKANGITSEV 693

Query: 281 LSGIIEQRAVLGISE-----KNINEERVFL---QNKNNIIDTYISKS 319
           L G+   +  LG  +         +    L    N    +   +   
Sbjct: 694 LDGLSPIQTDLGRIKDSYGSTRHEDFNKALIDANNSVKKLTKKLPDL 740


>gi|94987190|ref|YP_595123.1| flagellin-like protein [Lawsonia intracellularis PHE/MN1-00]
 gi|94731439|emb|CAJ54802.1| Flagellin and related hook-associated proteins [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 525

 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 273 MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLS 332
            L  ++     I+ Q A +G  E  +   +  L          +S     +     ++L 
Sbjct: 441 ALKDLELAQKNILTQAARIGGKENRLEITKEALDTNKYDQTQRLSGVEDADLTELVSRL- 499

Query: 333 TLINKIEMSYMI----TTKLQKLSILNYL 357
               + +M+Y      ++ + +L++  Y+
Sbjct: 500 ---AQQQMAYSTILKSSSMIMQLNLTKYI 525


>gi|203287641|ref|YP_002222656.1| flagellar hook-associated protein 3 [Borrelia recurrentis A1]
 gi|201084861|gb|ACH94435.1| flagellar hook-associated protein 3 [Borrelia recurrentis A1]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 43/99 (43%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            NL +    ++  + L+ + + LS I+   A LG  E  +      L  +   +   + +
Sbjct: 325 DNLEENREGLIGSRNLAEIDESLSKILSTLADLGTKENRLEVSYARLSKEIMDMKDDMVQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  ++ ++ + ++L++L
Sbjct: 385 YTDLDVTKAITDLNMTSLAYQVSLGVSARIMQTTLLDFL 423


>gi|302343764|ref|YP_003808293.1| hypothetical protein Deba_2337 [Desulfarculus baarsii DSM 2075]
 gi|301640377|gb|ADK85699.1| hypothetical protein Deba_2337 [Desulfarculus baarsii DSM 2075]
          Length = 606

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/189 (9%), Positives = 60/189 (31%), Gaps = 7/189 (3%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S  + +   +     +  +  +L+ +  TG              ++     +   + + 
Sbjct: 3   VSQMTFYRTSSAQLMRIQTELSRLNNQAATGDIISKPSDAPVSSITVQSATVQLQELDQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
                     LS + +  S +  ++Q  +     +  G  D++   + A  ++      +
Sbjct: 63  AIDLEHAKSWLSQATSDFSQLDSLIQQALTLAEQMSTGTMDSSNRQVAAEKVQGLIGDII 122

Query: 126 TFANMTDEGQYLFSGINSSEKP------LNGYFTKDSLAKKSFD-QMLQGFLEENSKSLL 178
              N    G ++++G  + +        ++   T  S    + +      +    S+ + 
Sbjct: 123 LICNNEISGSHIYAGTRTDQSAVSSSLKVDDIATPASGNTGTGNIYAFGDYSGLMSRDIT 182

Query: 179 AGQHLEVSS 187
                 V++
Sbjct: 183 ITADATVAN 191


>gi|293408374|ref|ZP_06652213.1| flagellar hook-associated protein 3 [Escherichia coli B354]
 gi|291471552|gb|EFF14035.1| flagellar hook-associated protein 3 [Escherichia coli B354]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 101/351 (28%), Gaps = 51/351 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        ++   ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIQSLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+        + NS          
Sbjct: 123 AALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSYS------YQGNSDHRQTTVSNG 176

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V        +DF     D  +                                       
Sbjct: 177 VEVDTNVAASDFFGSNLDVLNTLNS----------------------------------- 201

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTK--KMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
                  +  E    N+      V +     +  V      +    A LG ++  ++   
Sbjct: 202 -------LSQELQDPNVDPADPQVQSDIQNAVDVVDTASDNLNASIASLGETQNTMSMLS 254

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
               + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 255 DAQTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 305


>gi|212709499|ref|ZP_03317627.1| hypothetical protein PROVALCAL_00541 [Providencia alcalifaciens DSM
           30120]
 gi|212687837|gb|EEB47365.1| hypothetical protein PROVALCAL_00541 [Providencia alcalifaciens DSM
           30120]
          Length = 305

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 59/176 (33%), Gaps = 3/176 (1%)

Query: 29  LHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQK 88
              ++ +G+  +         +  +   Q +N   + + S       ++   + L+ M  
Sbjct: 20  AGSQLASGKRVNKPSDDPQASSQAVRINQSENRNQQYVTSRGFAKTGMTLQMSILTQMTD 79

Query: 89  IVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEK 146
           +   +   ++    +G   +      A  +    E  V   N TD  G+Y+F+G  S + 
Sbjct: 80  VTTQIDTSIIQASNQGALSDKDRNTLADQITGLKEQLVALGNSTDGNGRYIFAGFKSDKA 139

Query: 147 PLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLED 202
           P         +     D+ +   +  + +        +V   +   M +  K L +
Sbjct: 140 PF-EIDADGEVLYHGGDKPITQNVASDREMTTYFTGAQVFETDGAGMVNVFKALNE 194


>gi|149908752|ref|ZP_01897413.1| flagellar hook-associated protein [Moritella sp. PE36]
 gi|149808294|gb|EDM68233.1| flagellar hook-associated protein [Moritella sp. PE36]
          Length = 288

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 105/309 (33%), Gaps = 56/309 (18%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
               ++  + E+ ++ +   +     + LS ++ +++S+   +  +    +    G    
Sbjct: 33  GTVKLMALQAEQANLKQFNTNIENARRHLSGAETYVTSISDQLGKLRDLTLEAGNGTLTP 92

Query: 108 NKFPINAGMLRDSYESFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQML 166
                 A  +    ES +  +N     G+YLFSG   ++ P+ G          + D   
Sbjct: 93  AGRKAIAQEMEAVKESLLASSNAKGSNGKYLFSGSEVAKAPIAG------PDPVTGDYTY 146

Query: 167 QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI 226
            G   E   ++ +G  + VS+++ ++   F    +D F D + +          N   ++
Sbjct: 147 VGDNSERKITIASGVKV-VSNIDVEE--TFFDGGKDFFKDLDGYIEKL------NTDSQV 197

Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIE 286
                            R +M  A+  +   +  L            L+T+   LS II 
Sbjct: 198 PAD--------------RKVMLAAIDSSADTNLQL------------LTTIGTRLSEII- 230

Query: 287 QRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITT 346
                        +    +      +         ++  TA  +L+     ++ + M+  
Sbjct: 231 ----------QTKDTNTDISLYGKNLQ---LSLEQLDYGTASFELAQAELALKTTQMVYV 277

Query: 347 KLQKLSILN 355
           K  KLS+ N
Sbjct: 278 KASKLSLFN 286


>gi|84514826|ref|ZP_01002189.1| flagellar hook-associated protein 3 FlgL [Loktanella vestfoldensis
           SKA53]
 gi|84510985|gb|EAQ07439.1| flagellar hook-associated protein 3 FlgL [Loktanella vestfoldensis
           SKA53]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 41/405 (10%), Positives = 117/405 (28%), Gaps = 69/405 (17%)

Query: 20  KELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTS 79
            ++NK+      ++ TG+      +       +   EQ    +     + +   +RLS  
Sbjct: 6   SQVNKEIELRQTKISTGREITEASEKPIEAVKLSALEQSLTQLKGFQRNTTTAQQRLSLG 65

Query: 80  QAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN---------- 129
              L+S+  I+  +    +         +        +  S E+ +  AN          
Sbjct: 66  DTVLASVDGIMAQLRERAISANTDTVSASDLAAIRVDVAQSREALIDLANSRTSDDQALF 125

Query: 130 --------------------------------------MTDEGQYLFSGINSS------- 144
                                                  +  G  +F  +++S       
Sbjct: 126 GGYATDIQPFTPDTNGRIQYRGDGGQHTLAASETTRLPTSVNGAEVFMQVDTSDGVASIF 185

Query: 145 -------EKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
                     L       +L+  + D++   F  +     ++      S   +   TD +
Sbjct: 186 DIVDSFEAALLTDGSYASTLSADAGDELSLSFNGDRVPRDVSFDLQGPSGSTSITATDVV 245

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE-GIDVSANVNMRGIRDIM----FVAVI 252
               D+        ++ +      +   +  +     ++ +       ++        ++
Sbjct: 246 GGSHDQLKSAINKKSDETGVIATVVGGHLVLSAATGTIALSALKIEGVELASREPRFTIM 305

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
                 + +   A+       L  + Q    I   R  +G   K   ++   LQ++   +
Sbjct: 306 ADGEPPQTMVPTAQT--LDAQLEKLVQAGQDIAVSRTKIGARLKRAEDQEAALQSRALAL 363

Query: 313 DTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +T +++    +      +L  L+   + +    +++ + S+ ++L
Sbjct: 364 ETDVNELGSADLGKVVTELQALLVSRDAAMQAYSRIGQSSLFDFL 408


>gi|49184567|ref|YP_027819.1| flagellar hook-associated protein [Bacillus anthracis str. Sterne]
 gi|65319006|ref|ZP_00391965.1| COG1344: Flagellin and related hook-associated proteins [Bacillus
           anthracis str. A2012]
 gi|227815504|ref|YP_002815513.1| putative flagellar hook-associated protein FlgL [Bacillus anthracis
           str. CDC 684]
 gi|254683227|ref|ZP_05147088.1| putative flagellar hook-associated protein FlgL [Bacillus anthracis
           str. CNEVA-9066]
 gi|254734580|ref|ZP_05192292.1| putative flagellar hook-associated protein FlgL [Bacillus anthracis
           str. Western North America USA6153]
 gi|254740988|ref|ZP_05198676.1| putative flagellar hook-associated protein FlgL [Bacillus anthracis
           str. Kruger B]
 gi|254755231|ref|ZP_05207265.1| putative flagellar hook-associated protein FlgL [Bacillus anthracis
           str. Vollum]
 gi|254759767|ref|ZP_05211791.1| putative flagellar hook-associated protein FlgL [Bacillus anthracis
           str. Australia 94]
 gi|49178494|gb|AAT53870.1| flagellin, N-terminus [Bacillus anthracis str. Sterne]
 gi|227003631|gb|ACP13374.1| putative flagellar hook-associated protein FlgL [Bacillus anthracis
           str. CDC 684]
          Length = 207

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLTNIEQM 62

Query: 66  LHSNSLVTKR--LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
                +   R  LS ++  L S+ K +  +    +  L G     +       L    + 
Sbjct: 63  QK--DIADSRNVLSQTENTLQSIVKSLTRVDQLTIQALNGTNSEKELKAIGAELDQLVKQ 120

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
            V  AN  ++G+Y+F G ++ + P     T
Sbjct: 121 VVYLANTKEQGRYIFGGDSAEKPPFTDDGT 150


>gi|238796910|ref|ZP_04640414.1| Flagellin and hook-associated protein [Yersinia mollaretii ATCC
           43969]
 gi|238719170|gb|EEQ10982.1| Flagellin and hook-associated protein [Yersinia mollaretii ATCC
           43969]
          Length = 298

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 96/314 (30%), Gaps = 58/314 (18%)

Query: 47  ARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKI-VQDMVGPLVILLEGKT 105
           A  +  + ++    ++ +   +       L      L+S+  +  +++   +V    G  
Sbjct: 37  AGASQAVIYQNALANMQQFDTARLYAQDALEQEDNTLTSIGHLLTENLSKKIVAGGNGAL 96

Query: 106 DNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
            +      A  L+   ++ +   N T   G+Y+F G  +   P      +        D 
Sbjct: 97  SDADRQALATELQGIRDNLLDLGNTTNSNGRYIFGGYKTGSAPF-----EKDGTYVGGDT 151

Query: 165 MLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY 224
            +   + ++++  +     +V          F+                           
Sbjct: 152 AMTQHVADSTEMQVGHIGSDV----------FMSG------------------------- 176

Query: 225 RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGI 284
                         N      +        E +  +    A          ++++G+  +
Sbjct: 177 -------------SNDDIFAALDSAIAALNEPIVDDADREALQKTLDSANISIKKGIDNL 223

Query: 285 IEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA---HAQLSTLINKIEMS 341
            + +A +G + + I+        +   + + + +++G +  T     +Q       +  S
Sbjct: 224 GKVQAQVGTNLQQIDSLAERSAVEQINMQSRLQQTVGSDPSTMITLASQSKMTEFALNSS 283

Query: 342 YMITTKLQKLSILN 355
            M+   +QKLSI N
Sbjct: 284 MMVFQSMQKLSIFN 297


>gi|90418385|ref|ZP_01226297.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90338057|gb|EAS51708.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 297

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 105/352 (29%), Gaps = 67/352 (19%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T+            +N +  +    + TG   +      A  +       +   + 
Sbjct: 2   TSINTNVSAMTALQSLSMINNNLNETQSRISTGYRVNAASDNAAYWSIATTMRSDNKALG 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   +L T+   + +   +V ++   LV   E   D  K       L+    S
Sbjct: 62  AVEDALGLGQAKLDTAYTGMKAAIDVVDEIKAKLVAAREPGVDKTKIQAEITELQGQLTS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             T A+        FSG N        + +  +        ++  F              
Sbjct: 122 IATSAS--------FSGEN--------WLSIGTGIVAGTKTIVSSF-------------N 152

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             +  +    T  +   + K  D +                              N  GI
Sbjct: 153 RAADASVSVSTIGVDTTKTKLFDTD------------------------------NTDGI 182

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            D+      GT   +  +T G  +     M+S V + L  +    + LG ++  ++ +  
Sbjct: 183 LDVGR--TNGTVVSTFTITAGTTDAQVSAMISDVDEALQAMTTAASNLGAAKNRVDIQSE 240

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+    + I+  +   +  +      +L  L  + ++       +Q LSI N
Sbjct: 241 FVSTLRDSIEKGVGTLVDADMTEESTRLKALQTQQQLG------VQALSIAN 286


>gi|251789175|ref|YP_003003896.1| flagellar hook-associated protein 3 [Dickeya zeae Ech1591]
 gi|247537796|gb|ACT06417.1| flagellar hook-associated protein 3 [Dickeya zeae Ech1591]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 38/306 (12%), Positives = 100/306 (32%), Gaps = 48/306 (15%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
            +  +   Q +N   +   + +     ++   + L+++   +      L+   +G  ++N
Sbjct: 46  ASKAVMVNQAQNQNEQYTLARTFAKNGMNGELSVLTNVVTALTTGSTTLISA-DGTKNDN 104

Query: 109 KFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ 167
              + A  LR      +  AN TD  G Y+F G  ++ +P        +++     Q + 
Sbjct: 105 ARQMIATSLRGLKSQLLNLANSTDGNGNYVFGGYKTNVQPFTT-DASGTVSYVGGTQAIS 163

Query: 168 GFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIK 227
             ++ N    +     +V                  F++    A+ +S            
Sbjct: 164 QQVDANRIMTVGHIGSDV------------------FNNASGTADIFSA----------- 194

Query: 228 DTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQ 287
               +D + +     +              + +    A        + +++  L+ +   
Sbjct: 195 ----LDSAISALETPLE------------GATDAVKSANTASLNGAIQSIRSALTNVSSA 238

Query: 288 RAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTK 347
           +A LG+  + I+       ++       +S  I ++     +        ++ SY   + 
Sbjct: 239 QATLGVQLQEIDTLDSIGTDRTMANKETLSDLIDIDLVATISSYMMQQQSLQASYKAFSD 298

Query: 348 LQKLSI 353
           +Q LS+
Sbjct: 299 MQGLSL 304


>gi|315616820|gb|EFU97437.1| flagellar hook-associated protein 3 [Escherichia coli 3431]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 108/349 (30%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M     +L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNDLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+    QG  +    ++  G  ++
Sbjct: 123 AALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSY--SYQGNSDHRQTTVSNGVEVD 180

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +   +      +  L    S  +       + +D  ++  I++                
Sbjct: 181 TNVAASDFFGSNLDVLNTLNSLSQELQAPNVDPADPQVQSDIQN---------------- 224

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                        +  V      +    A LG ++  ++     
Sbjct: 225 ----------------------------AVDVVDTASDDLNASIASLGETQNTMSMLSDA 256

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 257 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 305


>gi|221635455|ref|YP_002523331.1| flagellar hook-associated protein 3 [Thermomicrobium roseum DSM
           5159]
 gi|221157287|gb|ACM06405.1| flagellar hook-associated protein 3 [Thermomicrobium roseum DSM
           5159]
          Length = 291

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 43/133 (32%)

Query: 24  KDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83
               ++++++ + +             ++L        I + L +       L  +   L
Sbjct: 21  ARMERVYQQITSARRISRPSDDPVGTATVLRLGSAAQEIEQYLANVEQARTWLDLTDQAL 80

Query: 84  SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS 143
           +++ + +Q     +V         +        L    E   T  N    G+YLF+G  +
Sbjct: 81  TTIGQSLQRARELVVQAANDTLSADDRQAIWQELTALQEQIATTGNYAHAGRYLFAGSLT 140

Query: 144 SEKPLNGYFTKDS 156
             +P +      +
Sbjct: 141 QTEPFDLSTDPPT 153


>gi|261338457|ref|ZP_05966341.1| YhgE/Pip domain protein [Bifidobacterium gallicum DSM 20093]
 gi|270276442|gb|EFA22296.1| YhgE/Pip domain protein [Bifidobacterium gallicum DSM 20093]
          Length = 933

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/343 (8%), Positives = 93/343 (27%), Gaps = 28/343 (8%)

Query: 7   STSS-IFERMNILTKELNKDSVKLHEEMVTGQSS----------DYGLQLGARVTSILEW 55
           ST++ +  R +    +   +     + +  G+ +                 AR       
Sbjct: 179 STNAELSNRTDQAIAKTTNELNAAQQSIKDGRDTISELTHTLEQTPERTQAARTAIDQAV 238

Query: 56  EQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNK--FPIN 113
               +          L    L+ +Q  + +        +     LL   + +        
Sbjct: 239 SAASSASTGLKTGQDL----LNQTQTKIGTFSSQASSTLDEGSALLSQASGDTASNITTI 294

Query: 114 AGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEEN 173
           +  +        +            + I S  + +          ++    ++    ++N
Sbjct: 295 SSAISSGTGQTGSALTGMQGVNSSMASILSDLQAI-DVSALSPELQQQLQAIITDLQQKN 353

Query: 174 SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
           + + +    L+   +N+   T          +     +   S  +  N + +I       
Sbjct: 354 TDTGVIITDLQT--LNSDTQTT--ANTVSALATQTNTSVQDSLRAAGNARTQISTGALPK 409

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
           ++  +N            +      +         +  ++ +      + +     +LG 
Sbjct: 410 LNMGLNSLA----TTAGTLAGGLSGQQSLVEQTRTVLDQLDAVASSAKTALQNTDTLLGT 465

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLIN 336
               I+  +  L + ++     ++  +GV+       ++  +N
Sbjct: 466 MNGRIDTLKTDLTSLSS--ANALTSLLGVDGKLDATTIADFMN 506


>gi|90418384|ref|ZP_01226296.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90338056|gb|EAS51707.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 319

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 112/353 (31%), Gaps = 47/353 (13%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T++           +N +  +    + TG          A  +       +   + 
Sbjct: 2   TSINTNTSAMTALQSLSMINSNLDETQNRISTGFRVGAASDNAAYWSIATTMRSDNKALG 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+   +++   +V ++   LV   E   D  K       L+    S
Sbjct: 62  AVEDALGLGQAKVDTAYTGMNAAIDVVDEIKAKLVAAREPGVDKTKIQSEITELQGQLTS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             T A+        FSG N        + + DS A  +  + +      +S   ++   +
Sbjct: 122 IATSAS--------FSGEN--------WLSVDSTAPANATKSVVASFNRDSAGAVSVGTI 165

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           EV   +  +   F    +   +        +S A    +  +      +           
Sbjct: 166 EV---DTSKTKLFDAATDAATAGTGILDGMYSAADGSYLADQTAAGFNVST--------- 213

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKM-LSTVQQGLSGIIEQRAVLGISEKNINEER 302
                            LTD A +V T    +S V   L  +    + LG ++  ++ + 
Sbjct: 214 ------------LDISALTDAAGDVTTLNSYISGVDDALQRMTTAASNLGAAKSRMDIQS 261

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
            F+ N  + I+  +   +  +      +L  L  + ++       +Q LSI N
Sbjct: 262 EFVSNLRDSIEKGVGTLVDADMTEESTRLKALQTQQQLG------VQALSIAN 308


>gi|149911695|ref|ZP_01900303.1| putative flagellar synthesis; flagellar regulon;
           hook-associatedprotein [Moritella sp. PE36]
 gi|149805225|gb|EDM65242.1| putative flagellar synthesis; flagellar regulon;
           hook-associatedprotein [Moritella sp. PE36]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 60/407 (14%), Positives = 121/407 (29%), Gaps = 57/407 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ + IF R      +  +     H ++ +           A V+       E N   + 
Sbjct: 3   LTNNQIFTRSMQDMSKSQQRLNTAHTQITSLNKYKTSADSPADVSKSTYLNDEINKNTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             ++ ++   L   +A LS++   ++      +  L G          A  + +  +   
Sbjct: 63  QKNSLMLKSTLGLEEATLSNIHTAMERGRVLTIRALNGSVGELDLNAIATEINEVQKEIF 122

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ----------------G 168
              N     G ++FSG  S  +       K     +  +Q  +                 
Sbjct: 123 NLVNTKNANGDHIFSGSASEVQSYTWDANKAQYNFQGNEQDNKIQIASNVFIRNGDNGRE 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKF----SDDEYWANNWSNAS-DHNIK 223
             E     L+A     V +++A ++    +   D F     D    ANN    +      
Sbjct: 183 VFESAPARLIALSDNLVGNVSAAEVRIIDQGEYDNFHRDNYDYAMPANNIFKITVSPPTI 242

Query: 224 YRIKDTEGIDVSANV----------NMRGIRDIMFVAVIGTE-----FLSKNLTD----- 263
               DT  I  S N           N+     +   A   +       L+ ++ +     
Sbjct: 243 PGNSDTYTITDSGNNVQQSGNFMSDNIIRFGGMAMSATGASPGSVDIILAPSINENILNT 302

Query: 264 -GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG- 321
             A   +      T  +   GI + +  +G ++  +      +  +NN I+     +   
Sbjct: 303 LEAFKKVLTDTSITKSEFQDGIADAQLGIGNAKHAVMSVISSIGGRNNAIERITESNESF 362

Query: 322 -------------VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                         +   A   L+   N +E SY    K+  LS+ N
Sbjct: 363 KLINQEAMAILTETDLAAAMTDLTKEQNILETSYKTFNKINNLSLFN 409


>gi|159184370|ref|NP_353593.2| flagellin protein FlaD [Agrobacterium tumefaciens str. C58]
 gi|2459700|gb|AAB71776.1| FlaD [Agrobacterium tumefaciens]
 gi|159139683|gb|AAK86378.2| flagellin protein FlaD [Agrobacterium tumefaciens str. C58]
          Length = 430

 Score = 41.2 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
              M+S V + L  +    + LG  +  I+ +  F+ +  ++ID  + + +  + +    
Sbjct: 340 IDMMMSFVDKQLEAMTSTASSLGSLQSRISMQENFVSSLMDVIDKGVGRLVDADMNEEST 399

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +L  L  + ++       +Q LSI N
Sbjct: 400 RLKALQTQQQLG------IQALSIAN 419


>gi|170021353|ref|YP_001726307.1| flagellar hook-associated protein 3 [Escherichia coli ATCC 8739]
 gi|188492112|ref|ZP_02999382.1| flagellar hook-associated protein 3 [Escherichia coli 53638]
 gi|169756281|gb|ACA78980.1| flagellar hook-associated protein 3 [Escherichia coli ATCC 8739]
 gi|188487311|gb|EDU62414.1| flagellar hook-associated protein 3 [Escherichia coli 53638]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 108/349 (30%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+    QG  +    ++  G  ++
Sbjct: 123 AALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSY--SYQGNSDHRQTTVSNGVEVD 180

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +   +      +  L    S  +   +   + +D  ++  I++                
Sbjct: 181 TNVAASDFFGSNLDVLNTLNSLSQELQDPDVDPADPQVQSDIQN---------------- 224

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                        +  V      +    A LG ++  ++     
Sbjct: 225 ----------------------------AVDVVDTASDDLNASIASLGETQNTMSMLSDA 256

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 257 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 305


>gi|59889787|emb|CAH19143.1| Lateral flagellar hook associated protein 3 (FlgL-like)
           [Escherichia coli]
 gi|284920051|emb|CBG33108.1| lateral flagellar hook associated protein 3 (FlgL-like)
           [Escherichia coli 042]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 102/351 (29%), Gaps = 51/351 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKEILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+        + NS          
Sbjct: 123 VALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSYS------YQGNSDHRQTTVSNG 176

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V       ++DF     D  +                                       
Sbjct: 177 VEVDTNVAVSDFFGSNLDVLNT-------------------------------------- 198

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTK--KMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
               +  +  E    N+      V +     +  V      +    A LG ++  ++   
Sbjct: 199 ----LNTLSQELQDPNVDPADPQVQSDIQNAVDVVDTASDNLNASIASLGETQNTMSMLS 254

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
               + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 255 DAQTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 305


>gi|312879809|ref|ZP_07739609.1| flagellin domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783100|gb|EFQ23498.1| flagellin domain protein [Aminomonas paucivorans DSM 12260]
          Length = 1021

 Score = 40.8 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 5/129 (3%)

Query: 229  TEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
             + + V    N +G      +  +      ++     R  ++  +L  V      +++ R
Sbjct: 897  NQQVQVRTAANQKGQDFFGVLDDLIAAVKGED-----RLGISNFLLGKVTAWGDNLLKCR 951

Query: 289  AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
               G            L+  N  +    SK   V+   A  Q        + S  + +K+
Sbjct: 952  TECGALVNRYENSESRLKENNLNLTELQSKISDVDLAEAATQFQMAQAVYQASLAVISKI 1011

Query: 349  QKLSILNYL 357
             + +++++L
Sbjct: 1012 VQPTLVDFL 1020



 Score = 40.5 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 16/151 (10%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSS--------DYGLQLGARVTSILEWEQ 57
           +S   + + M    +      +++  ++ T +          D    L    T     + 
Sbjct: 5   VSNPMMQQMMLTDMQNNLARMLEIQHQIATQKKFSKPSDNPIDVTRSLAMGTTITENVQY 64

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
           ++N               L  ++   + +  + Q +    +   +G   +      A  L
Sbjct: 65  QRNIDDGVTW--------LKNTETSFNQITNVYQQVRQLAIYAGDGGLADVDMGAIAEQL 116

Query: 118 RDSYESFVTFANMTDEGQYLFSGINSSEKPL 148
               E     AN   EG++L SG+++  +P 
Sbjct: 117 EQLQEEMRCAANYEVEGRFLLSGLSTGIRPF 147


>gi|319443813|pdb|3PWX|A Chain A, Structure Of Putative Flagellar Hook-Associated Protein
           From Vibrio Parahaemolyticus
 gi|319443814|pdb|3PWX|B Chain B, Structure Of Putative Flagellar Hook-Associated Protein
           From Vibrio Parahaemolyticus
          Length = 239

 Score = 40.8 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 1/100 (1%)

Query: 51  SILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKF 110
            +L  E+E + IA+   + + +   LS+ + HL S+ + ++     ++    G   +   
Sbjct: 12  KLLNLERENSAIAQYQSNIANLKTTLSSQETHLDSVSESLKSXRDIVLWGANGSLTDQDR 71

Query: 111 PINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLN 149
                 L+   +S  +  N  DE G +LFSG  +    LN
Sbjct: 72  SGXITELKSYRDSIESSFNAQDEEGHFLFSGTKTDTAALN 111


>gi|90418383|ref|ZP_01226295.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90338055|gb|EAS51706.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 309

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 103/352 (29%), Gaps = 55/352 (15%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T+            +N +  +    + TG          A  +       +   + 
Sbjct: 2   TSINTNVSAMTALQSLSMINSNLDETQNRISTGFRVGAASDNAAYWSIATTMRSDNKALG 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+   + +   +V +M   LV   E   D +K       L+    S
Sbjct: 62  AVEDALGLGQAKVDTAYTGMKAAIDVVDEMKSKLVAAREPGVDKSKIQAELKELQGQLTS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             + A+        FSG N      +G          SF++   G +   +  ++ G   
Sbjct: 122 IASSAS--------FSGENWLS--FDGAANTSKSVVASFNRSAAGAVSVGTIDIVIGGTK 171

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
                           L   F+     A   S ++       I DT+             
Sbjct: 172 LFGDDTVGVGGANNGILNTAFTTTGAGAATVSVSTLDITAANIDDTD------------- 218

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                                       +M+S V   +  +    + LG ++  ++ +  
Sbjct: 219 --------------------------ISEMISAVDGAIQSMTTGASNLGAAKSRMDIQSE 252

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+ N  + I+  +   +  +      +L  L  + ++       +Q LSI N
Sbjct: 253 FVSNLRDSIEKGVGTLVDADMTEESTRLKALQTQQQLG------VQALSIAN 298


>gi|254508428|ref|ZP_05120548.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus 16]
 gi|219548638|gb|EED25643.1| flagellar hook-associated protein 3 [Vibrio parahaemolyticus 16]
          Length = 397

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 120/404 (29%), Gaps = 63/404 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQEKNH 61
           IS+   ++ +    +           ++ +G+     SD  L        I    Q+K  
Sbjct: 5   ISSFHNYQSVQNDLRRQEGKVHHNQAQLASGKKLMKASDDPLA----THYIQNIGQQKEQ 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + +   +  L   RL   +  +S+ ++   +    ++ ++ G             + +  
Sbjct: 61  LRQYSDAIVLTRNRLEHHEVIISNAEEFADEAKRTVMEMINGALSPEDRFAKRREIEEIA 120

Query: 122 ESFVTFANMTD-EGQYLFSGINSSEKPL------------NGYF--------------TK 154
            +F+   N+ D  G Y+F+G     +P             + Y                 
Sbjct: 121 NNFLNLVNVQDESGNYIFAGTKPKNQPFFRDKDAEVVYAGDDYQRKMKISNSLEMPINDP 180

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS-SMNAQQMTDFIKQLEDKFSDDEYWA-- 211
            S      D     F  +      +   LE + ++N    + +     D  +    +   
Sbjct: 181 GSKLFMEIDNPFGDFSPKYDLQEASELLLERAINLNPDDQSTYKVTFVDMPNGKYGYQLE 240

Query: 212 NNWSNASDH---------------NIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF 256
            + S                     +K +I   + I++                 + +  
Sbjct: 241 RDGSVVQADTFDPSKGIKYEDVTIQVKGQITKGDAIELEPRRTYSIFETFKEAMDLSSGS 300

Query: 257 LSKNLTDGARNVLTKK---MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           +S +      + +T++       + +  + +  +   L I E+   +  + L        
Sbjct: 301 VSDSSNTAQLHQVTQEFHAAFIHLNKARTDVGARLNTLDIQEEQHADFEMTLAKSK---- 356

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              S    ++   A  + +     ++ S     K + L++ NY+
Sbjct: 357 ---SNFEDLDYAAAIIEFNENSRALQASQQAFGKTKDLTLFNYI 397


>gi|301645422|ref|ZP_07245363.1| flagellar hook-associated protein 3 [Escherichia coli MS 146-1]
 gi|301076306|gb|EFK91112.1| flagellar hook-associated protein 3 [Escherichia coli MS 146-1]
          Length = 317

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 108/349 (30%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M     +L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 11  VTTQQTYVSMTQSFNDLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQY 70

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 71  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 130

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+    QG  +    ++  G  ++
Sbjct: 131 AALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSY--SYQGNSDHRQTTVSNGVEVD 188

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            +   +      +  L    S  +       + +D  ++  I++                
Sbjct: 189 TNVAASDFFGSNLDVLNTLNSLSQELQAPNVDPADPQVQSDIQN---------------- 232

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                        +  V      +    A LG ++  ++     
Sbjct: 233 ----------------------------AVDVVDTASDDLNASIASLGETQNTMSMLSDA 264

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 265 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 313


>gi|218671649|ref|ZP_03521318.1| putative flagellin protein [Rhizobium etli GR56]
          Length = 250

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  LST++  LS +    A LG     I  +  F+   ++ ID+ + + +  +     +
Sbjct: 159 IQSALSTIESALSAMTSAGAQLGSISTRIELQEDFVSALSDSIDSGVGRLVDADMEEESS 218

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 219 KLSALQTQQQLA------IQSLSIAN 238


>gi|152221|gb|AAA26277.1| flagellin A (flaA) [Sinorhizobium meliloti]
          Length = 395

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 267 NVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
                 ++S V   L+ +    A LG     I+ +  F+   ++ I++ + + +  + + 
Sbjct: 302 AAALDALISGVDAALTDMTSAAASLGSISSRIDLQSEFVNKLSDSIESGVGRLVDADMNE 361

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILN 355
              +L  L  + +++      +Q LSI N
Sbjct: 362 ESTRLKALQTQQQLA------IQALSIAN 384


>gi|313905161|ref|ZP_07838530.1| hypothetical protein EubceDRAFT_1245 [Eubacterium cellulosolvens 6]
 gi|313470064|gb|EFR65397.1| hypothetical protein EubceDRAFT_1245 [Eubacterium cellulosolvens 6]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 33/74 (44%)

Query: 284 IIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYM 343
           I      LG+ +  + + +  L    + +      ++GV+Q+ A  ++ +     + +  
Sbjct: 342 ISNTYRQLGMKQAFLEDTQTKLGIVKDTLQKQYDDTLGVDQYQAITKMYSQQYAYQAALK 401

Query: 344 ITTKLQKLSILNYL 357
           + + L + S+ +++
Sbjct: 402 VGSNLMQSSLFDFV 415


>gi|150395492|ref|YP_001325959.1| flagellin domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150027007|gb|ABR59124.1| flagellin domain protein [Sinorhizobium medicae WSM419]
          Length = 395

 Score = 40.8 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 267 NVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
                 ++S V   L+ +    A LG     I+ +  F+   ++ ID+ + + +  + + 
Sbjct: 302 AAALDALISGVDAALTDMTSAAASLGSISSRIDLQSEFVNKLSDSIDSGVGRLVDADMNE 361

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILN 355
              +L  L  + +++      +Q LSI N
Sbjct: 362 ESTRLKALQTQQQLA------IQALSIAN 384


>gi|13124736|sp|P13118|FLAA2_RHIME RecName: Full=Flagellin A
 gi|12057227|gb|AAB81420.2| FlaA [Sinorhizobium meliloti]
          Length = 395

 Score = 40.8 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 267 NVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
                 ++S V   L+ +    A LG     I+ +  F+   ++ I++ + + +  + + 
Sbjct: 302 AAALDALISGVDAALTDMTSAAASLGSISSRIDLQSEFVNKLSDSIESGVGRLVDADMNE 361

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILN 355
              +L  L  + +++      +Q LSI N
Sbjct: 362 ESTRLKALQTQQQLA------IQALSIAN 384


>gi|304392499|ref|ZP_07374439.1| flagellin B [Ahrensia sp. R2A130]
 gi|303295129|gb|EFL89489.1| flagellin B [Ahrensia sp. R2A130]
          Length = 314

 Score = 40.8 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 103/352 (29%), Gaps = 50/352 (14%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           + I T++         +  N         + TG          A  +       +   ++
Sbjct: 2   SSILTNTASMTALKTLQATNNALETTQSRISTGLKVQDASDNAAYWSIATTMRSDNKALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   +   +   L++   +V  +   LV   E   D +K       L+    S
Sbjct: 62  TVQDALGLGAAKSDIAYTGLNAAIDVVDQIKTKLVAAREPGVDKSKIQAELKELQGQLTS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             T    +  G+   S I+          T   L K+      +      S   L     
Sbjct: 122 IATS--SSFSGENWLS-IDHDS----DTVTDTDLTKEIVSSFNRDASGSVSVGTLEVNVT 174

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
            V+  NA   +D +  ++                          DTE +  + +      
Sbjct: 175 NVALFNANAASDGLLDVDFDI-----------------------DTETVAGTKDQVSVAN 211

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            DI    +   +                 M+S V   +S +    A LG +   I  +  
Sbjct: 212 LDISLATITDADI--------------DAMISGVDAAVSSMTSAAANLGATSSRIEMQND 257

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+ N  + ID  +S  +  +      +LS L  + ++       +Q LSI N
Sbjct: 258 FVGNLMDAIDRGVSALVDADMTAESTRLSALQTQQQLG------IQSLSIAN 303


>gi|218509946|ref|ZP_03507824.1| flagellin C protein [Rhizobium etli Brasil 5]
          Length = 261

 Score = 40.8 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+T++  LS +    A LG     I+ +  F+   ++ ID+ + + +  +     +
Sbjct: 170 IQSALTTIESALSAMTSAGAQLGSISTRIDLQEDFVGALSDSIDSGVGRLVDADMEEESS 229

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 230 KLSALQTQQQLA------IQSLSIAN 249


>gi|219684714|ref|ZP_03539657.1| flagellar hook-associated protein 3 [Borrelia garinii PBr]
 gi|219685804|ref|ZP_03540613.1| flagellar hook-associated protein 3 [Borrelia garinii Far04]
 gi|219672076|gb|EED29130.1| flagellar hook-associated protein 3 [Borrelia garinii PBr]
 gi|219672637|gb|EED29667.1| flagellar hook-associated protein 3 [Borrelia garinii Far04]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 42/99 (42%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L +    ++  + L+ + + L  ++   A LG  E  ++     +  +   +   + +
Sbjct: 325 DTLYNNKEELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKEAADMKEDMVQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  I+ K+ + ++L+++
Sbjct: 385 YTDLDVTKAITNLNMASLAYQVSLGISAKIMQTTLLDFI 423


>gi|260853473|ref|YP_003227364.1| putative lateral flagellar hook-filament junction protein
           [Escherichia coli O26:H11 str. 11368]
 gi|260866419|ref|YP_003232821.1| putative lateral flagellar hook-filament junction protein
           [Escherichia coli O111:H- str. 11128]
 gi|257752122|dbj|BAI23624.1| predicted lateral flagellar hook-filament junction protein
           [Escherichia coli O26:H11 str. 11368]
 gi|257762775|dbj|BAI34270.1| predicted lateral flagellar hook-filament junction protein
           [Escherichia coli O111:H- str. 11128]
 gi|323178486|gb|EFZ64064.1| flagellar hook-associated protein 3 [Escherichia coli 1180]
          Length = 309

 Score = 40.8 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 101/349 (28%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+        + NS          
Sbjct: 123 AALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSYS------YQGNSDHRQTTVSNG 176

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V        +DF     D  +     +    N        +++                 
Sbjct: 177 VEVDTNVAASDFFGSNLDVLNTLNSLSQELQNPDVDPADPQVQSD--------------- 221

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                     +  +  V      +    A LG ++  ++     
Sbjct: 222 -------------------------IQNAVDVVDTASDDLNASIASLGETQNTMSMLSDA 256

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E++    +K+ +L++
Sbjct: 257 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEVTLKTYSKVSELNL 305


>gi|291326354|ref|ZP_06124196.2| flagellar hook-associated protein 3 [Providencia rettgeri DSM 1131]
 gi|291314692|gb|EFE55145.1| flagellar hook-associated protein 3 [Providencia rettgeri DSM 1131]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 2/129 (1%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
                +    ++ +G+            +  +   Q +N   + + S       ++   +
Sbjct: 13  AQARWMDAGSQLASGKRVSKPSDDPQASSQAVRINQSENRNQQYVASRGFAKTGMTLQMS 72

Query: 82  HLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFS 139
            L+ M  +   +   ++    +G   +      A  L    E  V   N TD  G+Y+F+
Sbjct: 73  ILTQMTDVTTQIDTTIIQASNQGALSDKDRNTLAEQLTGLKEQLVALGNSTDGNGRYIFA 132

Query: 140 GINSSEKPL 148
           G  S + P 
Sbjct: 133 GFKSDKPPF 141


>gi|224370753|ref|YP_002604917.1| putative flagellin [Desulfobacterium autotrophicum HRM2]
 gi|223693470|gb|ACN16753.1| putative flagellin [Desulfobacterium autotrophicum HRM2]
          Length = 692

 Score = 40.8 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 3/160 (1%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M+   IS   I+         +  +    +E + T +  +        ++ ++       
Sbjct: 1   MRVPNIS---IYSSATYRLGTITSNLQDANEVVSTQKRINSMSDDPIGLSQVMGMNTNLK 57

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            + +   +  +    L T +A L+S    + ++   +  L       ++    A  + + 
Sbjct: 58  GLEQFNRNIDMGKTWLDTGEAALTSTNDSLLELKISIQQLSSAAAGTDQRAAMADNVDNI 117

Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKK 160
            +  V   N      Y+FSG   SEKPL      +  A  
Sbjct: 118 IKQLVDIGNSQVLDNYIFSGSKISEKPLTFDNELNPTAVV 157



 Score = 37.0 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 32/88 (36%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
             + LS +   +  +    A  G+ + N+      +      +    S     +   +  
Sbjct: 605 LTRTLSRLDSHMDQVQSYIADSGLKQNNLEIRVNVMSETTLSVTERRSMVEDADIVQSVM 664

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
            L  +    E +   T+K+  +S+++Y+
Sbjct: 665 DLKAIETAYEAALASTSKIMSISLVDYM 692


>gi|210614858|ref|ZP_03290357.1| hypothetical protein CLONEX_02571 [Clostridium nexile DSM 1787]
 gi|210150500|gb|EEA81509.1| hypothetical protein CLONEX_02571 [Clostridium nexile DSM 1787]
          Length = 1745

 Score = 40.8 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 89/318 (27%), Gaps = 28/318 (8%)

Query: 50   TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNK 109
                    +K  + + L +    +   + S+    +     Q +        +G  D+  
Sbjct: 1332 AKTDTVNVDKAELKKLLDNKEDTSSWTTDSKQAYDAAIAAGQKVYDSEHAS-KGSVDSAV 1390

Query: 110  FPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQM---- 165
              I   +     +  ++      + + L    N + +    Y    S  + + +      
Sbjct: 1391 LAIKNAVADKELKGDMSKLQAALD-KALKDSENYTARTWRVYSNAVSAIETAMENADNTS 1449

Query: 166  -------LQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNAS 218
                   L       S  +     +E   +  Q   DFI   +     +E W N    A+
Sbjct: 1450 VADVEKLLADLEAAKSALVYNPSAMEECMLAVQAENDFINATDKSIYTEESWNNFV--AA 1507

Query: 219  DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKM----- 273
               ++  I+  +   V  +     ++ +       T      ++    + L K       
Sbjct: 1508 KEAVEQLIEKNKTTPVHPSEFKDALKALKDAKEGLTFVPVAPVSKEVLSGLIKTAEGLDA 1567

Query: 274  -------LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
                      + + L+    +      +E+++      L      + T  +    V+ + 
Sbjct: 1568 QLYTKDSYQALTEALNAAKAEFDRTDSTEESVKAAVDKLDAAIKALVTRANG-EEVKAYI 1626

Query: 327  AHAQLSTLINKIEMSYMI 344
               +L       E SY +
Sbjct: 1627 NGIELKDASKYTEESYKV 1644


>gi|188025868|ref|ZP_02960117.2| hypothetical protein PROSTU_02025 [Providencia stuartii ATCC 25827]
 gi|188020804|gb|EDU58844.1| hypothetical protein PROSTU_02025 [Providencia stuartii ATCC 25827]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 93/334 (27%), Gaps = 47/334 (14%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
                +    ++ +G+            +  +   Q +N   + + S       +    +
Sbjct: 13  AQARWMDAGSQLASGKRVSKPSDDPQASSQAVRVNQSENRNQQYVASRGFAKTGMLLQMS 72

Query: 82  HLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFS 139
            L+ M ++   +   ++    +G   ++     A  L    +  V   N TD  G+Y+F+
Sbjct: 73  VLTQMTEVTTQIDTTIIQASNQGSLSDSDRMSLAEQLSGLKDQLVALGNTTDGNGRYIFA 132

Query: 140 GINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQ 199
           G  S + P       D + K     ++Q    +                   +MT +   
Sbjct: 133 GYKSDKPPFEVNAAGDVIYKGGDKAIMQNVSSDR------------------EMTTYFTG 174

Query: 200 LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSK 259
            +  F+ D     N   A +  I       +    S                        
Sbjct: 175 AQ-VFATDSNNVVNVFKALNEGIAALKTPQDQATQS------------------------ 209

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
                A         + V+  L  I    +  G+  + I++       ++      IS+ 
Sbjct: 210 --EKEAAQKALDSANTAVKSALDKISNIESKQGLQLQEIDQLNFLADTRSIQNSQRISEL 267

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
           +              +   + S  I   L  +S+
Sbjct: 268 LDTNWTGVTTDYYKEMAMFQASQDIFKDLNSMSL 301


>gi|291486065|dbj|BAI87140.1| hypothetical protein BSNT_05346 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 273

 Score = 40.5 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 54/167 (32%), Gaps = 2/167 (1%)

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGI--DVSANVNMRGI 243
           +     Q T+ +  ++D+        +  S  ++ N K  +  +E          N    
Sbjct: 97  AGNTGTQQTEDLTAIKDEMDALTEEIDGISQRTEFNGKKLLDGSETAGFTFQIGANAGQN 156

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            ++    +  T    K +   A +      +  +   ++ +  QRA LG  +  +     
Sbjct: 157 INVTIGNMDATTLGVKGIDVSADDFSFDTEIVKIDSAITSVSNQRAKLGAVQNRLEHTIN 216

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
            L   +  +    S+   V+     ++ +      + S  +  +  +
Sbjct: 217 NLGASSENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQ 263


>gi|300911991|ref|ZP_07129434.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus subsp. aureus TCH70]
 gi|300886237|gb|EFK81439.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus subsp. aureus TCH70]
          Length = 9904

 Score = 40.5 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 5693 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 5752

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 5753 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 5812

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 5813 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 5869

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A +  NA D  +K  I D + I 
Sbjct: 5870 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLDNAMDQ-LKQGIADHDTIV 5928

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +    + 
Sbjct: 5929 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DSN 5987

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 5988 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6047

Query: 343  M 343
             
Sbjct: 6048 A 6048


>gi|323976262|gb|EGB71355.1| flagellar hook protein 3 [Escherichia coli TW10509]
          Length = 309

 Score = 40.5 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 108/349 (30%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ +   + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNNLSGELAHVVEQMATGKEILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+      D     +     QG  +    ++  G  ++
Sbjct: 123 AALNYQDEDGHYVFGGTINDQPPIV--AVDDDGDGVTDRYSYQGNSDHRQTTVSNGVEVD 180

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
                    +DF     D  +          NA    ++             N N+    
Sbjct: 181 ----TNVAASDFFGSNLDVLNTL--------NALSQELQ-------------NPNVDP-- 213

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                             D       +  ++ V      +    A LG ++  ++     
Sbjct: 214 -----------------ADPQVQSDIQNAVNVVDTASDDLNASIASLGETQNTMSMLSDA 256

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 257 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 305


>gi|21283053|ref|NP_646141.1| hypothetical protein MW1324 [Staphylococcus aureus subsp. aureus MW2]
 gi|81762503|sp|Q8NWQ6|EBH_STAAW RecName: Full=Extracellular matrix-binding protein ebh; AltName:
            Full=ECM-binding protein homolog; Flags: Precursor
 gi|21204492|dbj|BAB95189.1| ebh [Staphylococcus aureus subsp. aureus MW2]
          Length = 9904

 Score = 40.5 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 5693 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 5752

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 5753 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 5812

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 5813 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 5869

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A +  NA D  +K  I D + I 
Sbjct: 5870 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLDNAMDQ-LKQGIADHDTIV 5928

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +    + 
Sbjct: 5929 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DSN 5987

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 5988 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6047

Query: 343  M 343
             
Sbjct: 6048 A 6048


>gi|229023208|ref|ZP_04179719.1| Flagellar hook-associated protein 3 [Bacillus cereus AH1272]
 gi|228738133|gb|EEL88618.1| Flagellar hook-associated protein 3 [Bacillus cereus AH1272]
          Length = 287

 Score = 40.5 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 54/148 (36%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQMMDLNVQQQYYRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS ++  L  + K +  +    +  + G    N+   +A  +    +  V
Sbjct: 63  QKDIADSRNVLSQTENTLQGIVKSLTRVEQLTLQAVNGTNSPNELKASAAEIDQLLKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++S+ P     T
Sbjct: 123 YLANKQEQGRYIFGGDSASKPPFAEDGT 150


>gi|296282272|ref|ZP_06860270.1| flagellar hook-associated protein FlgL [Citromicrobium
           bathyomarinum JL354]
          Length = 306

 Score = 40.5 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 101/354 (28%), Gaps = 52/354 (14%)

Query: 5   GISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE 64
            +ST + +ER       L   +  L +++ TG+  +           +   ++E+   A 
Sbjct: 3   SLSTGAFYERSATQIGSLRSRAESLQKQIGTGERLERSSDDPVAAARLRMLDREERVTAV 62

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
              +       +  +   L  +  ++       +      T +++    A  L    ES 
Sbjct: 63  DTRNADQAENNMRFTDEALGQIATMISRARELALHAANATTSDDQRASIATELDGLRESL 122

Query: 125 VTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
           +  AN     G  LF G     + +   +  D +   +      G    +   +  GQ +
Sbjct: 123 LGLANGRNASGHSLFGG-----QAVGNAYDIDPVTGAA---TYAGTPTLDLVEIGEGQTI 174

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           +   M  Q +  F               + ++  +  +   R       D          
Sbjct: 175 QP-GMTGQDVFAFSD-------AGGAPTDLFAQLASLSTALRTGGAGAADA--------- 217

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                                      +  L+T+  G   +   + VLG     +     
Sbjct: 218 --------------------------ARDALTTLDTGFDKVTTAQTVLGSRMAWLEIMSE 251

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              +    I    S   G +      +L  ++  +E S     +L  L++ + L
Sbjct: 252 RRVDNVERITEERSVMGGADPAVTMTRLQEMMTVLEASQASFVRLANLNLFSML 305


>gi|307318919|ref|ZP_07598350.1| flagellin domain protein [Sinorhizobium meliloti AK83]
 gi|306895333|gb|EFN26088.1| flagellin domain protein [Sinorhizobium meliloti AK83]
          Length = 395

 Score = 40.5 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 267 NVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
                 ++S V   L+ +    A LG     I+ +  F+   ++ I++ + + +  + + 
Sbjct: 302 AAALDALISGVDAALTDMTSAAASLGSISSRIDLQSEFVNKLSDSIESGVGRLVDADMNE 361

Query: 327 AHAQLSTLINKIEMSYMITTKLQKLSILN 355
              +L  L  + +++      +Q LSI N
Sbjct: 362 ESTRLKALQTQQQLA------IQALSIAN 384


>gi|111115004|ref|YP_709622.1| flagellar hook-associated protein FlgL [Borrelia afzelii PKo]
 gi|216263850|ref|ZP_03435844.1| flagellar hook-associated protein 3 [Borrelia afzelii ACA-1]
 gi|110890278|gb|ABH01446.1| flagellar hook-associated protein 3 [Borrelia afzelii PKo]
 gi|215979894|gb|EEC20716.1| flagellar hook-associated protein 3 [Borrelia afzelii ACA-1]
          Length = 424

 Score = 40.5 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 40/92 (43%)

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
             ++  + L+ + + L  ++   A LG  E  ++     +  +   +   + +   ++  
Sbjct: 332 EELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKETADMKEDMVQYTDLDVT 391

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            A   L+      ++S  I+ K+ + ++L+++
Sbjct: 392 KAITNLNMASLAYQVSLGISAKIMQTTLLDFI 423


>gi|209521597|ref|ZP_03270295.1| flagellar hook-associated protein 3 [Burkholderia sp. H160]
 gi|209497980|gb|EDZ98137.1| flagellar hook-associated protein 3 [Burkholderia sp. H160]
          Length = 408

 Score = 40.5 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 48/404 (11%), Positives = 119/404 (29%), Gaps = 52/404 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  F        +      ++++E+ +GQS              ++       +++ 
Sbjct: 3   ISTAQYFSMNVSTMSDQQAQLSQIYQEISSGQSLTTPADNPLGAAQAVQLSSTAAALSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     L    + L+S+   +Q      + +  G  ++      A  L    +  +
Sbjct: 63  STNQTTALSSLRAEDSTLTSVITTLQSANTLGLSVGSGTLNDTNRSAIAAQLTTLRDQLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTK----------------DSLAKKSFDQMLQG 168
           T+AN TD  G  +F+G  +S K                        DS +    D  +  
Sbjct: 123 TYANATDGSGNAMFAGFQNSTKAFTTNAAGTVVYSGDTGTRTVQVTDSNSVAIGDNGMSV 182

Query: 169 FLEENSKSLLAGQHLEVSSMNAQQMT----DFIKQLEDKFSDDEYWANNWSNASDHNIKY 224
           F+   + +         S+     +            +  S    ++ + S+ +      
Sbjct: 183 FMSVGATNAEPIASGSSSNTGTGVIGPVTVTNPTNTANADSYQIQFSGSGSSLTYTVTDT 242

Query: 225 RIKDTEGIDVSAN---------------------------VNMRGIRDIMFVAVIGTEFL 257
                       +                            N  G      +  + T   
Sbjct: 243 TTGVAGTAQTYTSGSNITVGGQTVDITGTPAANDTFTVQPANKAGTNVFANLNAMITALQ 302

Query: 258 SKNLTDGARNVLTKKMLST----VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
                + A     +  ++T    +   L+ I   +A +G  E+ +   +   Q  +    
Sbjct: 303 QPVTGNDAAAATLQNAMNTGLSQLANTLNNITAVQASVGGREQEVEALQTVTQTNSTQTA 362

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           + ++     +     ++ +     ++ S     K+Q +S+ +Y+
Sbjct: 363 SNLADLTSTDMTKTISKYTLTQEALQASQQAFVKIQGMSLFDYI 406


>gi|218703532|ref|YP_002411051.1| lateral flagellar hook associated FlgL-like protein [Escherichia
           coli UMN026]
 gi|293403362|ref|ZP_06647453.1| predicted protein [Escherichia coli FVEC1412]
 gi|298378973|ref|ZP_06988854.1| predicted protein [Escherichia coli FVEC1302]
 gi|218430629|emb|CAR11495.1| Lateral flagellar hook associated protein 3 (FlgL-like)
           [Escherichia coli UMN026]
 gi|291429215|gb|EFF02235.1| predicted protein [Escherichia coli FVEC1412]
 gi|298280086|gb|EFI21590.1| predicted protein [Escherichia coli FVEC1302]
          Length = 309

 Score = 40.5 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 101/351 (28%), Gaps = 51/351 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKEILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+        + NS          
Sbjct: 123 VALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSYS------YQGNSDHRQTTVSNG 176

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V        +DF     D  +                                       
Sbjct: 177 VEVDTNVAASDFFGSNLDVLNT-------------------------------------- 198

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTK--KMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
               +  +  E    N+      V +     +  V      +    A LG ++  ++   
Sbjct: 199 ----LNTLSQELQDPNVDPADPQVQSDIQNAVDVVDTASDNLNASIASLGETQNTMSMLS 254

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
               + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 255 DAQTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 305


>gi|331671811|ref|ZP_08372607.1| flagellar hook-associated protein 3 [Escherichia coli TA280]
 gi|331070800|gb|EGI42159.1| flagellar hook-associated protein 3 [Escherichia coli TA280]
          Length = 317

 Score = 40.5 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 100/351 (28%), Gaps = 51/351 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 11  VTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKEILQPSDDPIAATRITQLNRQQSAIEQY 70

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 71  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 130

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+        + NS          
Sbjct: 131 AALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSYS------YQGNSDHRQTTVSNG 184

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V        +DF     D  +                                       
Sbjct: 185 VEVDTNVAASDFFGSNLDVLNTLNS----------------------------------- 209

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTK--KMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
                  +  E    N+      V +     +  V      +    A LG ++  ++   
Sbjct: 210 -------LSQELQDPNVDPADPQVQSDIQNAVDVVDTASDNLNASIASLGETQNTMSMLS 262

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
               + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 263 DAQTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 313


>gi|224532221|ref|ZP_03672853.1| flagellar hook-associated protein 3 [Borrelia valaisiana VS116]
 gi|224511686|gb|EEF82092.1| flagellar hook-associated protein 3 [Borrelia valaisiana VS116]
          Length = 424

 Score = 40.5 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 42/99 (42%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L +    ++  + L+ + + L  ++   A LG  E  ++     +  +   +   + +
Sbjct: 325 DTLYNNKEELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKEAADMKEDMVQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  I+ K+ + ++L+++
Sbjct: 385 YTDLDVTKAITNLNMASLAYQVSLGISAKIMQTTLLDFI 423


>gi|318604260|emb|CBY25758.1| flagellar hook-associated protein FlgL [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 293

 Score = 40.5 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 55/142 (38%), Gaps = 4/142 (2%)

Query: 219 DHNIKYRIKDTEGID--VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLST 276
           D  +   I   E  D   S + +   +  +  +  +  + +  ++   A N      L+ 
Sbjct: 153 DAVVGNGITLQENTDLSSSLSASGNNLEILTNLKKLANKMIDSSIKPAAYNQEISDNLAA 212

Query: 277 VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS-KSIGVEQHTAHAQLSTLI 335
           ++ G   I      LG  +  +      L +   I++  +     G++    ++ + +  
Sbjct: 213 IEIGAKKIGGMLTDLGAKQNRLEH-LSNLHDDVEIVNANLEKDLAGIDILQVNSAMQSNF 271

Query: 336 NKIEMSYMITTKLQKLSILNYL 357
              ++++ +  K+ +LS+ NY+
Sbjct: 272 LSTKIAHSMQAKISQLSLFNYI 293


>gi|51598443|ref|YP_072631.1| flagellar hook-associated protein FlgL [Borrelia garinii PBi]
 gi|51573014|gb|AAU07039.1| flagellar hook-associated protein 3 [Borrelia garinii PBi]
          Length = 424

 Score = 40.5 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 42/99 (42%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L +    ++  + L+ + + L  ++   A LG  E  ++     +  +   +   + +
Sbjct: 325 DTLYNNKEELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKEAADMKEDMVQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  I+ K+ + ++L+++
Sbjct: 385 YTDLDVTKAITNLNMASLAYQVSLGISAKIMQTTLLDFI 423


>gi|225352442|ref|ZP_03743465.1| hypothetical protein BIFPSEUDO_04064 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156949|gb|EEG70318.1| hypothetical protein BIFPSEUDO_04064 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 927

 Score = 40.5 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 89/309 (28%), Gaps = 43/309 (13%)

Query: 54  EWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN 113
             ++    I     SN  +   ++ S   L ++ K    +        + +  +N     
Sbjct: 219 TLDKALTTIDSAKQSNIALASEITNS---LDTVGKASDLLSETRT---QTERFSNTLVGA 272

Query: 114 AGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEEN 173
                          N+++    + SG+N+++  L+   +       +   +L G  +  
Sbjct: 273 LDNGSTQLSGL--QVNVSNATGTVLSGLNTTQDALDQVSSTMHRINTTTGTVLDGVEKAL 330

Query: 174 SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
             S L         ++AQ      +    +   D         A D +    I   +   
Sbjct: 331 QASQLDPNSQTYKDLSAQLAEARKQLTFQQQRID---------AFDQDTTAAINAGKNTA 381

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGII----EQRA 289
              N ++  +      ++             AR  +T  ++  +  GL  +         
Sbjct: 382 NGFNDDVTTLAKNGTASM-----------TSARTTITGTVMPNLNTGLDTLSLANGSLSG 430

Query: 290 VLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEM------SYM 343
            L   +  + +    L   +  +    +   G        QL+ L  ++        +  
Sbjct: 431 TLTTLQSTLEQGNGLLDQLSRTVTQTNTTIAG-----TQTQLANLAKQLNTTRTDVAALS 485

Query: 344 ITTKLQKLS 352
            +   Q+LS
Sbjct: 486 SSAMFQQLS 494


>gi|227820867|ref|YP_002824837.1| putative flagellin A [Sinorhizobium fredii NGR234]
 gi|227339866|gb|ACP24084.1| putative flagellin A [Sinorhizobium fredii NGR234]
          Length = 305

 Score = 40.5 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 272 KMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQL 331
           + L+ V+ GL  +    + LG     I  +  F+    + ID+ I + +  + +    +L
Sbjct: 216 EALTLVEDGLQAMTSAASELGSISMRIGLQEDFVAALTDSIDSGIGRLVDADMNEESTRL 275

Query: 332 STLINKIEMSYMITTKLQKLSILN 355
             L  + +++      +Q LSI N
Sbjct: 276 KALQTQQQLA------VQSLSIAN 293


>gi|86139958|ref|ZP_01058523.1| secreted hemolysin-type calcium-binding bacteriocin, putative
           [Roseobacter sp. MED193]
 gi|85823376|gb|EAQ43586.1| secreted hemolysin-type calcium-binding bacteriocin, putative
           [Roseobacter sp. MED193]
          Length = 3377

 Score = 40.5 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 38/384 (9%), Positives = 97/384 (25%), Gaps = 65/384 (16%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           T ++ + + +  ++L         E+   Q+      +GA  +   + +Q        L 
Sbjct: 163 TGNVDQALELQRQQLQSALDTASAELAAAQN-----NVGAMTSDKADADQTVTDAQTTLD 217

Query: 68  SNSLVTKRLSTS-------------QAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA 114
           + +     L +S             Q  L   Q  +    G L                 
Sbjct: 218 AAAATMSLLQSSGQVGDAQAALSLAQTALIQSQNALNAAQGELDTATTSAASMLSMRDAK 277

Query: 115 GMLRDSYESFVTFANMTDEG-QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEEN 173
                + ++  T A+      + L S    +           ++A+ + D          
Sbjct: 278 QTEVTNLQNQKTTADQELATTEALLSDAQDALLLETNGADAVTVAQTAVDDATTAVNAAQ 337

Query: 174 SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
           +        L+ +      +   ++  +D  +D +        A+D     R       D
Sbjct: 338 THVNELDGQLQQAQSELDGLNAQLQTAQDAVTDTQARVTAAEQAADETQTARDSAQALFD 397

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTD------------------------------ 263
                  +    +  ++ +       +L D                              
Sbjct: 398 TEVT--EQASAQVEMLSALNVYLSGGSLADFSVASAAYSAAREEKLAAETALADAISADD 455

Query: 264 ----------GARNVLTKKMLSTVQQGLSGIIE---QRAVLGISEKNINEERVFLQN-KN 309
                      A +    ++ +   Q  + I         LG +   ++  +  L   + 
Sbjct: 456 AADQLAATENAALSTAQSQVTTLTGQRDAAITTRDGLNTQLGAANTVLSTAQGNLSTVQQ 515

Query: 310 NIIDTYISKSIGVEQHTAHAQLST 333
           +++    +    ++   A  Q   
Sbjct: 516 DLLTAQQNNQAYIDAQEAVTQAQA 539


>gi|260949193|ref|XP_002618893.1| hypothetical protein CLUG_00052 [Clavispora lusitaniae ATCC 42720]
 gi|238846465|gb|EEQ35929.1| hypothetical protein CLUG_00052 [Clavispora lusitaniae ATCC 42720]
          Length = 1411

 Score = 40.5 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 50/176 (28%), Gaps = 13/176 (7%)

Query: 92  DMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGY 151
           +        L G + NN      G        F + AN T     LF   N+  KP  G 
Sbjct: 53  NTQQNANTGLFGNSSNNASTTLPGSTSSGL--FGSSANNTSNNGGLFG--NTGSKPTGGL 108

Query: 152 FTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY-- 209
           F   + +  +    L  F   NS S   G  L  +S +                 +    
Sbjct: 109 FGNTNSSSAAAGGGL--FGNTNSSSSTTGGGLFGTSASNPTSNTGTSNTSGGLFGNSNKP 166

Query: 210 -----WANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN 260
                + ++ S A+   +      T   + ++        +    A  G  F +  
Sbjct: 167 ATGGLFGSSNSTANTGGLFGHPNTTATGNSNSTAAGGLFGNSNSTATTGGLFGAST 222


>gi|170703621|ref|ZP_02894362.1| flagellar hook-associated protein 3 [Burkholderia ambifaria
           IOP40-10]
 gi|170131467|gb|EDT00054.1| flagellar hook-associated protein 3 [Burkholderia ambifaria
           IOP40-10]
          Length = 413

 Score = 40.5 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 3/143 (2%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
                ++       +++   + +     L      L S+  ++  +   +V   +G   +
Sbjct: 45  GAAQAVQLSMTSATLSQYATNQTAALASLQAEDQALQSVSGVLTSVQTLVVRAGDGSLAD 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQML 166
           +     A  L+   +  +T AN  D  G YLF+G+N+S  P     + +       D   
Sbjct: 105 SDRSALATQLQGYRDQLMTLANSNDGAGNYLFAGLNNSSAPFT--SSPNGSVSYVGDSGT 162

Query: 167 QGFLEENSKSLLAGQHLEVSSMN 189
           +     +S S+  G       M+
Sbjct: 163 RQVQIADSSSVAQGDTGSAVFMS 185


>gi|148980295|ref|ZP_01815982.1| flagellar hook-associated protein [Vibrionales bacterium SWAT-3]
 gi|145961314|gb|EDK26624.1| flagellar hook-associated protein [Vibrionales bacterium SWAT-3]
          Length = 294

 Score = 40.5 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 97/288 (33%), Gaps = 10/288 (3%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++ S     M     + N    K+ E+M TG   ++          +   ++  +   + 
Sbjct: 3   VTDSQFNAVMQRSLMDNNIRLNKVFEQMSTGLRINHLSDDPIAAVRLEGLKKTVSDNQQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +   V  +L+  + ++++++ + Q +   L+    G  D+         L+      +
Sbjct: 63  QRNIENVQSQLTRYETNVNTLESLSQQVNELLLQGKNGTLDSESRAGIVLELKSLKTEML 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
              N  +EG YLFSG + S   ++            + +   G  +    +L     +  
Sbjct: 123 NTLNQANEGSYLFSGTDISNPAIDTAPPYTLNPNSDYRETKVGDNQYVPSNLTITDTIGS 182

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           S++           L++  S+ E     ++ A D+ +       + + VS          
Sbjct: 183 SAI--------FTDLDNAISELELATGGFTTALDNALNTNQALHQDLLVSLTDIGSQYNA 234

Query: 246 I--MFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVL 291
           +  +    I   F ++ +      +   +    + QG+  +   +   
Sbjct: 235 LERLKETSIDMVFFAETVRSELEELDYAEASVELNQGMIALEATQKTF 282


>gi|300936134|ref|ZP_07151073.1| flagellar hook-associated protein 3 [Escherichia coli MS 21-1]
 gi|300458712|gb|EFK22205.1| flagellar hook-associated protein 3 [Escherichia coli MS 21-1]
          Length = 317

 Score = 40.1 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 100/349 (28%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+     + E+M TG+            T I +  ++++ I + 
Sbjct: 11  VTTQQTYVSMTQSFNNLSGSLAHVVEQMATGKEILQPSDDPIAATRITQLNRQQSAIEQY 70

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        ++   ES V
Sbjct: 71  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIQSLTESMV 130

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+        + NS          
Sbjct: 131 AALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSYS------YQGNSDHRQTTVSNG 184

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V        +DF     D  +     +    N        +++                 
Sbjct: 185 VEVDTNVAASDFFGSNLDVLNTLNSLSQELQNPDVDPADPQVQSD--------------- 229

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                     +  +  V      +    A LG ++  ++     
Sbjct: 230 -------------------------IQNAVDVVDTASDDLNASIASLGETQNTMSMLSDA 264

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 265 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 313


>gi|158422976|ref|YP_001524268.1| flagellin [Azorhizobium caulinodans ORS 571]
 gi|158329865|dbj|BAF87350.1| flagellin [Azorhizobium caulinodans ORS 571]
          Length = 366

 Score = 40.1 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 102/352 (28%), Gaps = 12/352 (3%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + +N      ++ + TG+  +      A          +   + 
Sbjct: 16  TSIITNNAASVALATLRSINDSLNTTNDRVSTGKKINSAADGAAYWNISTTLTSDNGALG 75

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               + +L    + T+   ++ +   +  +   LV       D      N        +S
Sbjct: 76  AVKDAINLDLASVKTTNTGVTQIMNSLNTIKQALVSAQSSTADRTSLQKNIANAVSDIKS 135

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             + A     G    S              K  LA  S    +         +     + 
Sbjct: 136 AASSA--VVNGANWLS---VDSSATGFNANKSLLANFSRTSGVVSVGSTTLDTGAFAVYD 190

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             ++  A   +  I +     +     +   + A   N        +    S + ++ G 
Sbjct: 191 AKTNGTATGTSSTIDKAVTAVATSATVSGGLTVAVGTNAGNLKGFMDT-TYSISGSVGGT 249

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
               F A I    +S   +           +  V   + G+      LG ++  +  ++ 
Sbjct: 250 TVAAFTASIADIDISALTSSDVDLAKLSSYMKIVSATIDGLQNGSTALGTTQTRLTSQQS 309

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F Q+  +I  + I   +         +L  L  + +++      +Q LSI N
Sbjct: 310 FAQSLIDINTSSIGSLVDANMEEESTKLKALQTQQQLA------VQSLSIAN 355


>gi|225618971|ref|YP_002720197.1| flagellar hook-associated protein FlgL [Brachyspira hyodysenteriae
           WA1]
 gi|225213790|gb|ACN82524.1| flagellar hook-associated protein FlgL [Brachyspira hyodysenteriae
           WA1]
          Length = 417

 Score = 40.1 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++  + F R     K    +       + TGQ   Y  Q      + + ++   + +   
Sbjct: 3   VTEQAQFNRTVSTIKRNYNEMEASQTRLSTGQRVQYPHQNVTSTINSIYYKTRMSSVDRY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +     ++LS +   +S++ + +       +         +     A  + +  E   
Sbjct: 63  QSNIVDGKEKLSVAHDSMSAITEALNRARDLAIQGANSTYGADDRAKMAMEVEEMIERIY 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162
             +    +G+Y+FSG +    P    +  D  A +S 
Sbjct: 123 DISKTQSKGEYIFSGTSIKTAPFRALYGHDEKAGRSI 159



 Score = 39.3 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 34/102 (33%), Gaps = 1/102 (0%)

Query: 256 FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
                L D  R  +  + L  +   L  +   +A        ++      +++   I+  
Sbjct: 316 LRDAMLNDDVR-AIGSEALGYIDSSLDNVATVQANASSKVTRLDMGYASFEDQKLAIEEA 374

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           ++K+  ++        +        S     +L   ++++YL
Sbjct: 375 LAKNENIDYAEEIVNFNMWQYAHNASLQTAGRLLGRTLMDYL 416


>gi|315122277|ref|YP_004062766.1| flagellin domain-containing protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495679|gb|ADR52278.1| flagellin domain-containing protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 457

 Score = 40.1 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
                K+MLS + Q L  +      +G     I+ +  F++   + ++  I + +  +  
Sbjct: 362 EATTMKEMLSFIDQKLKLVTSAAGKIGSISSRIHLQEDFVKFMRDAVEKGIGRLVDADMA 421

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILN 355
              ++LS L  + +++      +Q LSI+N
Sbjct: 422 DESSKLSALQTQQQLA------IQALSIVN 445


>gi|225552502|ref|ZP_03773442.1| flagellar hook-associated protein 3 [Borrelia sp. SV1]
 gi|225371500|gb|EEH00930.1| flagellar hook-associated protein 3 [Borrelia sp. SV1]
          Length = 424

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 42/99 (42%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L +    ++  + L+ + + L  ++   A LG  E  ++     +  +   +   + +
Sbjct: 325 DTLYNNKEELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKEAADMKEDMVQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  I+ K+ + ++L+++
Sbjct: 385 YTDLDVTKAITNLNMASLAYQLSIGISAKIMQTTLLDFI 423


>gi|300899459|ref|ZP_07117707.1| flagellar hook-associated protein 3 [Escherichia coli MS 198-1]
 gi|300356938|gb|EFJ72808.1| flagellar hook-associated protein 3 [Escherichia coli MS 198-1]
          Length = 317

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 101/351 (28%), Gaps = 51/351 (14%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+ D   + E+M TG+            T I +  ++++ I + 
Sbjct: 11  VTTQQTYVSMTQSFNNLSGDLAHVVEQMATGKEILQPSDDPIAATRITQLNRQQSAIEQY 70

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 71  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 130

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+        + NS          
Sbjct: 131 VALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSYS------YQGNSDHRQTTVSNG 184

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V        +DF     D  +                                       
Sbjct: 185 VEVDTNVAASDFFGSNLDVLNT-------------------------------------- 206

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTK--KMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
               +  +  E    N+      V +     +  V      +    A LG ++  ++   
Sbjct: 207 ----LNTLSQELQDPNVDPADPQVQSDIQNAVDVVDTASDNLNASIASLGETQNTMSMLS 262

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
               + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 263 DAQTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 313


>gi|254723816|ref|ZP_05185602.1| flagellar hook-associated protein FlgL [Bacillus anthracis str.
           A1055]
          Length = 287

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 51/148 (34%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLTNIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     LS ++  L S+ K +  +    +  L G     +       L    +  V
Sbjct: 63  QKDIADSRNVLSQTENTLQSIVKSLTRVDQLTIQALNGTNSEKELKAIGAELDQLVKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEKPPFTDDGT 150


>gi|218661981|ref|ZP_03517911.1| flagellin C protein [Rhizobium etli IE4771]
          Length = 310

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 98/326 (30%), Gaps = 44/326 (13%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            + +NK++ +  +++ +G   +      +  +       +  ++     +  L   ++  
Sbjct: 7   LRSINKEASQTQQQVSSGYRIETAADDASYWSVATVMRSDSTNLGTIGDALGLGAAKVDA 66

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +   ++S   +V  +   LV   E  TD +K        ++   + V     +  G+   
Sbjct: 67  TYTAMTSAIDLVTQIRAKLVAAREPGTDKDKINAEISEYKEQLRTVVES--TSFAGE--- 121

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
                       +      A      ++ GF+   +    A      SS           
Sbjct: 122 -----------NWLLNSDKAAPPTWSVISGFVRAPTGEYQAQSIDFPSSQT--------- 161

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFV---AVIGTE 255
                  D          AS       I        + N +  G R+   +   +     
Sbjct: 162 ----ILIDKNN-------ASGGLFTKAIDA-----QAINNSGTGPRNYYLLDADSTTPAT 205

Query: 256 FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
                +     +     ML      LS +    A +G+ +  I+++  +  + ++ ID  
Sbjct: 206 GTEVAIGKNTTDAQLADMLDVTDSLLSSLTTTSASIGVMKARIDDQIDYTADLSDSIDKS 265

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMS 341
           +   +  +   A  +   +  + +M+
Sbjct: 266 VGALVDTDMDEASIRQKAIETQKQMA 291


>gi|190892543|ref|YP_001979085.1| flagellin C protein [Rhizobium etli CIAT 652]
 gi|190697822|gb|ACE91907.1| flagellin C protein [Rhizobium etli CIAT 652]
          Length = 332

 Score = 40.1 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 94/315 (29%), Gaps = 27/315 (8%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            +++N++       + TG             +       +   ++    +  +    + T
Sbjct: 16  LRDINRNMTVTQNHVTTGMRVAKAADNAVYWSIATTARTDNKAVSAIQDALGMAAATMGT 75

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +   + ++  +V ++   LV   E   D +K       L++   S    A    +   + 
Sbjct: 76  AYTGVQNVIDVVSEIKAKLVAATEDGVDKSKIDEEIKQLQEQLRSVSESATFNSDNWVI- 134

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
             +N+   P        S  + +   +  G L  +  +   G         + +   ++ 
Sbjct: 135 --LNNDATPTQPRQIPASFIRNADGTISVGMLSYHIDNTPVG-------ATSSKDARYLI 185

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
                 S +     +   A++            +  S N    G              + 
Sbjct: 186 DDRATGSGEYGVLTSAYFATELGT----SQDYVLMTSKNGTTTG-------------QVV 228

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            +L+         +M+S V   L+ +    +  G  EK I  +  F    ++ I   I +
Sbjct: 229 ISLSSSTTKGQVSEMISVVDAALTQLTTVGSAFGALEKRIELQNDFATKLHDNITAGIGR 288

Query: 319 SIGVEQHTAHAQLST 333
            +  +     ++L  
Sbjct: 289 LVDADMEEESSRLRA 303


>gi|170681553|ref|YP_001742380.1| lateral flagellar hook associated protein 3 [Escherichia coli
           SMS-3-5]
 gi|170519271|gb|ACB17449.1| lateral flagellar hook associated protein 3 [Escherichia coli
           SMS-3-5]
          Length = 309

 Score = 40.1 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 100/349 (28%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+     + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNNLSGSLAHVVEQMATGKEILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        ++   ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIQSLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+        + NS          
Sbjct: 123 AALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSYS------YQGNSDHRQTTVSNG 176

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V        +DF     D  +     +    N        +++                 
Sbjct: 177 VEVDTNVAASDFFGSNLDVLNTLNSLSQELQNPDVDPADPQVQSD--------------- 221

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                     +  +  V      +    A LG ++  ++     
Sbjct: 222 -------------------------LQNAVDVVDTASDDLNASIASLGETQNTMSMLSDA 256

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 257 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 305


>gi|327194121|gb|EGE60993.1| flagellin C protein [Rhizobium etli CNPAF512]
          Length = 292

 Score = 40.1 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+T++  LS +    A LG     I+ +  F+   ++ ID+ + + +  +     +
Sbjct: 201 IQSALTTIESALSAMTSAGAQLGSISTRIDLQEDFVGALSDSIDSGVGRLVDADMEEESS 260

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 261 KLSALQTQQQLA------IQSLSIAN 280


>gi|300765794|ref|ZP_07075769.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
            N1-017]
 gi|300513488|gb|EFK40560.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
            N1-017]
          Length = 2028

 Score = 40.1 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 78/288 (27%), Gaps = 25/288 (8%)

Query: 50   TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIV----QDMVGPLVILLEGKT 105
               L   +       +   NS    RL + Q   + +  I     Q  V PL   +   +
Sbjct: 1332 AQALTLAKTAAFEEVKDGVNSSAEDRLDSVQVSQTQLDAIKNGSNQGGVYPLTYSITKDS 1391

Query: 106  DNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKP----LNGYFTKDSLAKKS 161
                  I   + +D   +     +    G    +  N                D     S
Sbjct: 1392 KTVSVTIQVTVAKD-LTAVNAHDSTIYIGDAWEAKDNFDSATNKEGATDIAFSDVTVTGS 1450

Query: 162  FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA--NNWSNASD 219
             +  + G            + + V     + +   +   +      + W   +N+ +A D
Sbjct: 1451 VNTAVAGVYPVTYTYNGVSKKINV---TVKAIKTAVNAHDSTIYTGDTWNARDNFDSALD 1507

Query: 220  HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQ 279
             +          +  S N N  G   I +     ++ ++  + +    +          +
Sbjct: 1508 KDGNSVAFADVTVTGSVNTNETGTNTITYSYDGVSQTITVTVVENKEGISAHDSTIYAGE 1567

Query: 280  GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
              +           ++ N +       N  ++ D  +++   V+   A
Sbjct: 1568 SWN-----------AKDNFDSAFDKDGNAVDLEDVTVTEKPTVDTTKA 1604


>gi|229189836|ref|ZP_04316847.1| Flagellar hook-associated protein 3 [Bacillus cereus ATCC 10876]
 gi|228593644|gb|EEK51452.1| Flagellar hook-associated protein 3 [Bacillus cereus ATCC 10876]
          Length = 287

 Score = 40.1 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 62

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q  L S+ +  Q  V  L     G     +       +    
Sbjct: 63  QKDIADSKNVLTQTENTLQGVLKSLTRADQLTVQAL----NGTNSEKELQAIGAEIDQIL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++ + P     T
Sbjct: 119 KQVVYLANTKEQGRYIFGGDSAEKPPFTEDGT 150


>gi|226223460|ref|YP_002757567.1| hypothetical protein Lm4b_00858 [Listeria monocytogenes Clip81459]
 gi|225875922|emb|CAS04626.1| unnamed protein product [Listeria monocytogenes serotype 4b str. CLIP
            80459]
          Length = 2030

 Score = 40.1 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 78/288 (27%), Gaps = 25/288 (8%)

Query: 50   TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIV----QDMVGPLVILLEGKT 105
               L   +       +   NS    RL + Q   + +  I     Q  V PL   +   +
Sbjct: 1346 AQALTLAKTAAFEEVKDGVNSSAEDRLDSVQVSQTQLDAIKNGSNQGSVYPLTYSITKDS 1405

Query: 106  DNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKP----LNGYFTKDSLAKKS 161
                  I   + +D   +     +    G    +  N                D     S
Sbjct: 1406 KTVSVTIQVTVAKD-LTAVNAHDSTIYIGDAWEAKDNFDSATNKEGATDIAFSDVTVTGS 1464

Query: 162  FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA--NNWSNASD 219
             +  + G            + + V     + +   +   +      + W   +N+ +A D
Sbjct: 1465 VNTAVAGVYPVTYTYNGVSKKINV---TVKAIKTAVNAHDSTIYTGDTWNARDNFDSALD 1521

Query: 220  HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQ 279
             +          +  S N N  G   I +     ++ ++  + +    +          +
Sbjct: 1522 KDGNSVAFADVTVTGSVNTNETGTNTITYSYDGVSQTITVTVVENKEGISAHDSTIYAGE 1581

Query: 280  GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
              +           ++ N +       N  ++ D  +++   V+   A
Sbjct: 1582 SWN-----------AKDNFDSAFDKDGNAVDLEDVTVTEKPTVDTTKA 1618


>gi|46907073|ref|YP_013462.1| cell wall surface anchor family protein [Listeria monocytogenes
            serotype 4b str. F2365]
 gi|46880340|gb|AAT03639.1| cell wall surface anchor family protein [Listeria monocytogenes
            serotype 4b str. F2365]
          Length = 2027

 Score = 40.1 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 78/288 (27%), Gaps = 25/288 (8%)

Query: 50   TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIV----QDMVGPLVILLEGKT 105
               L   +       +   NS    RL + Q   + +  I     Q  V PL   +   +
Sbjct: 1346 AQALTLAKTAAFEEVKDGVNSSAEDRLDSVQVSQTQLDAIKNGSNQGSVYPLTYSITKDS 1405

Query: 106  DNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKP----LNGYFTKDSLAKKS 161
                  I   + +D   +     +    G    +  N                D     S
Sbjct: 1406 KTVSVTIQVTVAKD-LTAVNAHDSTIYIGDAWEAKDNFDSATNKEGATDIAFSDVTVTGS 1464

Query: 162  FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA--NNWSNASD 219
             +  + G            + + V     + +   +   +      + W   +N+ +A D
Sbjct: 1465 VNTAVAGVYPVTYTYNGVSKKINV---TVKAIKTAVNAHDSTIYTGDTWNARDNFDSALD 1521

Query: 220  HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQ 279
             +          +  S N N  G   I +     ++ ++  + +    +          +
Sbjct: 1522 KDGNSVAFADVTVTGSVNTNETGTNTITYSYDGVSQTITVTVVENKEGISAHDSTIYAGE 1581

Query: 280  GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
              +           ++ N +       N  ++ D  +++   V+   A
Sbjct: 1582 SWN-----------AKDNFDSAFDKDGNAVDLEDVTVTEKPTVDTTKA 1618


>gi|47092049|ref|ZP_00229842.1| cell wall surface anchor family protein [Listeria monocytogenes str.
            4b H7858]
 gi|47019489|gb|EAL10229.1| cell wall surface anchor family protein [Listeria monocytogenes str.
            4b H7858]
          Length = 2027

 Score = 40.1 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 78/288 (27%), Gaps = 25/288 (8%)

Query: 50   TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIV----QDMVGPLVILLEGKT 105
               L   +       +   NS    RL + Q   + +  I     Q  V PL   +   +
Sbjct: 1346 AQALTLAKTAAFEEVKDGVNSSAEDRLDSVQVSQTQLDAIKNGSNQGSVYPLTYSITKDS 1405

Query: 106  DNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKP----LNGYFTKDSLAKKS 161
                  I   + +D   +     +    G    +  N                D     S
Sbjct: 1406 KTVSVTIQVTVAKD-LTAVNAHDSTIYIGDAWEAKDNFDSATNKEGATDIAFSDVTVTGS 1464

Query: 162  FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA--NNWSNASD 219
             +  + G            + + V     + +   +   +      + W   +N+ +A D
Sbjct: 1465 VNTAVAGVYPVTYTYNGVSKKINV---TVKAIKTAVNAHDSTIYTGDTWNARDNFDSALD 1521

Query: 220  HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQ 279
             +          +  S N N  G   I +     ++ ++  + +    +          +
Sbjct: 1522 KDGNSVAFADVTVTGSVNTNETGTNTITYSYDGVSQTITVTVVENKEGISAHDSTIYAGE 1581

Query: 280  GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
              +           ++ N +       N  ++ D  +++   V+   A
Sbjct: 1582 SWN-----------AKDNFDSAFDKDGNAVDLEDVTVTEKPTVDTTKA 1618


>gi|306813296|ref|ZP_07447489.1| flagellar hook-associated protein FlgL [Escherichia coli NC101]
 gi|305854059|gb|EFM54498.1| flagellar hook-associated protein FlgL [Escherichia coli NC101]
          Length = 309

 Score = 40.1 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 99/349 (28%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+     + E+M TG+            T I +  ++++ I + 
Sbjct: 3   VTTQQTYVSMTQSFNNLSGSLAHVVEQMATGKEILQPSDDPIAATRITQLNRQQSAIEQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    ES V
Sbjct: 63  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMV 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+        + NS          
Sbjct: 123 AALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSYS------YQGNSDHRQTTVSNG 176

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V        +DF     D  +     +    N        +++                 
Sbjct: 177 VEVDTNVAASDFFGSNLDVLNTLNSLSQELQNPDVDPADPQVQSD--------------- 221

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                     +  +  V      +    A LG ++  ++     
Sbjct: 222 -------------------------IQNAVDVVDTASDDLNASIASLGETQNTMSMLSDA 256

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 257 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 305


>gi|218249249|ref|YP_002374710.1| flagellar hook-associated protein 3 [Borrelia burgdorferi ZS7]
 gi|218164437|gb|ACK74498.1| flagellar hook-associated protein 3 [Borrelia burgdorferi ZS7]
          Length = 424

 Score = 40.1 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 42/99 (42%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L +    ++  + L+ + + L  ++   A LG  E  ++     +  +   +   + +
Sbjct: 325 DTLYNNKEELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKEAADMKEDMIQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  I+ K+ + ++L+++
Sbjct: 385 YTDLDVTKAITNLNMASLAYQVSIGISAKIMQTTLLDFI 423


>gi|308802796|ref|XP_003078711.1| kinesin K39, putative (ISS) [Ostreococcus tauri]
 gi|116057164|emb|CAL51591.1| kinesin K39, putative (ISS) [Ostreococcus tauri]
          Length = 1163

 Score = 40.1 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 41/370 (11%), Positives = 119/370 (32%), Gaps = 31/370 (8%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSS------DYGLQLGARVTSILEWEQEKN 60
           S+ +  + +      +  +      E+ +  ++        G    A  T +   + E  
Sbjct: 336 SSGAATQALETQLASMQSELQATQLELESKSAALEQAQSSSGAATQALETQLASMQSELQ 395

Query: 61  HIAERLHSNSLV-----TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAG 115
                L S S       +   + +QA  + +  +  ++    + L        +   ++G
Sbjct: 396 ATQLELESKSAALEQAQSSSGAATQALETQLASMQSELQATQLELESKSAALEQAQSSSG 455

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSK 175
               + E+ +       +   L   + S    L    +    A ++ +  L     E   
Sbjct: 456 AATQALETQLASMQSELQATQL--ELESKSAALEQAQSSSGAATQALETQLASMQSELQA 513

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
           + L  +    +    +Q                    +   A+   ++ +    E    S
Sbjct: 514 TQLELESKSAAL---EQAQSSSGAATQALETQLASMQSELQATQLELESKSAALEQAQSS 570

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL----SGIIEQRAVL 291
           +    + +     +A + +E  +  L   +++   ++  S+         + +   ++ L
Sbjct: 571 SGAATQALET--QLASMQSELQATQLELESKSAALEQAQSSSGAATQALETQLASMQSEL 628

Query: 292 GISEKNINEERVFL-QNKNNIIDTYISKSIGVEQH--------TAHAQLSTLINKIEMSY 342
             ++  +  +   L Q +++++    S    +E+H         A  +L  L  +++ + 
Sbjct: 629 QATQLELESKSAALEQAQSSLVQARSSSGTAIEEHSITLETLSEAEVRLGQLQTELDEAN 688

Query: 343 MITTKLQKLS 352
             T+ L+ +S
Sbjct: 689 ATTSALRGVS 698


>gi|225548520|ref|ZP_03769568.1| flagellar hook-associated protein 3 [Borrelia burgdorferi 94a]
 gi|225370783|gb|EEH00218.1| flagellar hook-associated protein 3 [Borrelia burgdorferi 94a]
          Length = 424

 Score = 40.1 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 42/99 (42%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L +    ++  + L+ + + L  ++   A LG  E  ++     +  +   +   + +
Sbjct: 325 DTLYNNKEELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKEAADMKEDMIQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  I+ K+ + ++L+++
Sbjct: 385 YTDLDVTKAITNLNMASLAYQVSIGISAKIMQTTLLDFI 423


>gi|91792671|ref|YP_562322.1| flagellar hook-associated protein FlgL [Shewanella denitrificans
           OS217]
 gi|91714673|gb|ABE54599.1| flagellin-like protein [Shewanella denitrificans OS217]
          Length = 400

 Score = 40.1 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 7/152 (4%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSIL---EWEQEKNHI 62
           IST  +F++           + K  +++ +G+  +     G    + +      Q+   +
Sbjct: 3   ISTGQMFQQNTKSILNNQSAANKTLQQLASGKRVN---TAGDDPVASIAIDNLSQKNVQV 59

Query: 63  AERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122
           ++ + +       LS +++ L S   ++  M G  +  + G        I A  ++ + +
Sbjct: 60  SQYIKNIDYAKNHLSIAESKLGSADSLMTTMRGQFLQGINGSLTAADRQIIADEMKSNLK 119

Query: 123 SFVTFANMTD-EGQYLFSGINSSEKPLNGYFT 153
             +  AN  D  G YLFSG   + KP     +
Sbjct: 120 ELLAIANSQDESGNYLFSGFKINSKPFAFDTS 151


>gi|297244608|ref|ZP_06928491.1| extracellular matrix-binding protein ebh [Staphylococcus aureus
            A8796]
 gi|297178638|gb|EFH37884.1| extracellular matrix-binding protein ebh [Staphylococcus aureus
            A8796]
          Length = 10624

 Score = 39.7 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 6572 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|282927961|ref|ZP_06335570.1| extracellular matrix-binding protein ebh [Staphylococcus aureus
            A10102]
 gi|282590258|gb|EFB95338.1| extracellular matrix-binding protein ebh [Staphylococcus aureus
            A10102]
 gi|312829827|emb|CBX34669.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            ECT-R 2]
          Length = 10624

 Score = 39.7 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 6572 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|258447397|ref|ZP_05695541.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus A6300]
 gi|257853588|gb|EEV76547.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus A6300]
          Length = 10598

 Score = 39.7 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6310 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6369

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 6370 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6429

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6430 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEA 6486

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6487 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 6545

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 6546 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 6604

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6605 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6664

Query: 343  M 343
             
Sbjct: 6665 A 6665


>gi|148267922|ref|YP_001246865.1| hypothetical protein SaurJH9_1495 [Staphylococcus aureus subsp.
            aureus JH9]
 gi|150393985|ref|YP_001316660.1| hypothetical protein SaurJH1_1524 [Staphylococcus aureus subsp.
            aureus JH1]
 gi|258420574|ref|ZP_05683516.1| cell surface protein [Staphylococcus aureus A9719]
 gi|205716444|sp|A6U1Q5|EBH_STAA2 RecName: Full=Extracellular matrix-binding protein ebh; AltName:
            Full=ECM-binding protein homolog; Flags: Precursor
 gi|205716445|sp|A5ISW6|EBH_STAA9 RecName: Full=Extracellular matrix-binding protein ebh; AltName:
            Full=ECM-binding protein homolog; Flags: Precursor
 gi|147740991|gb|ABQ49289.1| protein of unknown function DUF1542 [Staphylococcus aureus subsp.
            aureus JH9]
 gi|149946437|gb|ABR52373.1| protein of unknown function DUF1542 [Staphylococcus aureus subsp.
            aureus JH1]
 gi|257843522|gb|EEV67929.1| cell surface protein [Staphylococcus aureus A9719]
 gi|315129147|gb|EFT85142.1| hypothetical protein CGSSa03_06886 [Staphylococcus aureus subsp.
            aureus CGS03]
          Length = 10624

 Score = 39.7 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 6572 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|255520214|ref|ZP_05387451.1| hypothetical protein LmonocFSL_03112 [Listeria monocytogenes FSL
            J1-175]
          Length = 2033

 Score = 39.7 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 78/288 (27%), Gaps = 25/288 (8%)

Query: 50   TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIV----QDMVGPLVILLEGKT 105
               L   +       +   NS    RL + Q   + +  I     Q  V PL   +   +
Sbjct: 1346 AQALTLAKTAAFEEVKDGVNSSAEDRLDSVQVSQTQLDAIKNGSNQGSVYPLTYSITKDS 1405

Query: 106  DNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKP----LNGYFTKDSLAKKS 161
                  I   + +D   +     +    G    +  N                D     S
Sbjct: 1406 KTVSVTIQVTVAKD-LTAVNAHDSTIYIGDAWEAKDNFDSATNKEGATDIAFSDVTVTGS 1464

Query: 162  FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA--NNWSNASD 219
             +  + G            + + V     + +   +   +      + W   +N+ +A D
Sbjct: 1465 VNTAVAGVYPVTYTYNGVSKKINV---TVKAIKTAVNAHDSTIYTGDTWNARDNFDSALD 1521

Query: 220  HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQ 279
             +          +  S N N  G   I +     ++ ++  + +    +          +
Sbjct: 1522 KDGNSVAFADVTVTGSVNTNETGTNTITYSYDGVSQTITVTVVENKEGISAHDSTIYAGE 1581

Query: 280  GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
              +           ++ N +       N  ++ D  +++   V+   A
Sbjct: 1582 SWN-----------AKDNFDSAFDKDGNAVDLEDVTVTEKPTVDTTKA 1618


>gi|149916042|ref|ZP_01904565.1| Animal haem peroxidase [Roseobacter sp. AzwK-3b]
 gi|149810116|gb|EDM69964.1| Animal haem peroxidase [Roseobacter sp. AzwK-3b]
          Length = 2197

 Score = 39.7 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 93/298 (31%), Gaps = 28/298 (9%)

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
           T QA L++  +IVQ     +         +    +    L+ + ++         +G   
Sbjct: 138 TGQAMLTTANEIVQAYQRVIDAQAAAGNVDQALELQRQELQTALDTATAEL-TAAQGD-- 194

Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQ--QMTD 195
              + +     N      + A+ + D      +    +  +A   + +++  A   Q   
Sbjct: 195 ---VAAKTTAKNEADQAVTQAQDTLDNAAATMVTLQGQGQVAEMQVALNAAVAAHTQAEA 251

Query: 196 FIKQLEDKFSDDEYWAN---NWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI 252
            +K  +D+    E  A       NA    +          D        G+      A +
Sbjct: 252 DLKAAQDELLQAESAAASMLTMHNAKQTTVTNLQGQKATADQEL-ATAEGLLSDARAA-L 309

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN---KN 309
             E  +      A+  + +   + V    + + E  A L  +E ++ +    LQ      
Sbjct: 310 ALETDAAGAVTEAQTAV-ENATTAVSNAQTRVNELDAQLTQAEADLADLNTQLQAAEQTR 368

Query: 310 NIIDTYI------SKSIGVEQHTAHAQLST-----LINKIEMSYMITTKLQKLSILNY 356
           +   T +      + +   ++  A A   T        + EM   +T  +   S+ ++
Sbjct: 369 DAAQTRVTAAQEAAAATQADREDAQALFDTEVSELATAQAEMLSALTNYITGGSLADF 426



 Score = 37.8 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 33/346 (9%), Positives = 103/346 (29%), Gaps = 17/346 (4%)

Query: 11  IFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQ-----LGARVTSILEWEQEKNHIAER 65
           +   ++  T EL      +  +      +D  +      L     +++  + +      +
Sbjct: 177 LQTALDTATAELTAAQGDVAAKTTAKNEADQAVTQAQDTLDNAAATMVTLQGQGQVAEMQ 236

Query: 66  LHSNSLVTKR------LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
           +  N+ V         L  +Q  L   +     M+          T+       A     
Sbjct: 237 VALNAAVAAHTQAEADLKAAQDELLQAESAAASMLTMHNAKQTTVTNLQGQKATADQELA 296

Query: 120 SYESFVTFANMTDEGQYLFSGINS-SEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
           + E  ++ A      +   +G  + ++  +    T  S A+   +++     +  +    
Sbjct: 297 TAEGLLSDARAALALETDAAGAVTEAQTAVENATTAVSNAQTRVNELDAQLTQAEADLAD 356

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
               L+ +          +   ++  +  +    +     D  +   +   +   +SA  
Sbjct: 357 LNTQLQAAEQTRDAAQTRVTAAQEAAAATQADREDAQALFDTEV-SELATAQAEMLSALT 415

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           N      +   +V    + +      A        +    +    +I++ A L  ++  +
Sbjct: 416 NYITGGSLADFSVASAAYSAAREEKLAAETALNDAIDADDEADQAVIDETAALTTAQSRV 475

Query: 299 NEERVFLQ---NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
           +             + + T + ++ G+   +A   L+     ++ +
Sbjct: 476 STLTTQRDNDMTTRDGLSTQLDEANGL-LTSAQNTLTAAEQTLQTA 520


>gi|295110994|emb|CBL27744.1| Flagellin and related hook-associated proteins [Synergistetes
           bacterium SGP1]
          Length = 912

 Score = 39.7 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 11/133 (8%)

Query: 219 DHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQ 278
           D+   ++I   EG D+  N+       +   AV+ T+  S             + ++ + 
Sbjct: 782 DNTTVFQIGANEGEDMGINIGDMRAHALGLNAVLVTDRES-----------AARSITIID 830

Query: 279 QGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI 338
             +  +  QRA LG  +  +      L      + +  S+    +        + L   +
Sbjct: 831 NAIDKVSTQRAKLGAYQNRLEHTINNLNTAAENLTSAESRIRDTDMAKEMMNFTKLQIML 890

Query: 339 EMSYMITTKLQKL 351
           +    +  +  +L
Sbjct: 891 QAGTSMLAQANQL 903


>gi|254823890|ref|ZP_05228891.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
            J1-194]
 gi|293593115|gb|EFG00876.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
            J1-194]
          Length = 2033

 Score = 39.7 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 78/288 (27%), Gaps = 25/288 (8%)

Query: 50   TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIV----QDMVGPLVILLEGKT 105
               L   +       +   NS    RL + Q   + +  I     Q  V PL   +   +
Sbjct: 1346 AQALTLAKTAAFEEVKDGVNSSAEDRLDSVQVSQTQLDAIKNGSNQGSVYPLTYSITKDS 1405

Query: 106  DNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKP----LNGYFTKDSLAKKS 161
                  I   + +D   +     +    G    +  N                D     S
Sbjct: 1406 KTVSVTIQVTVAKD-LTAVNAHDSTIYIGDAWEAKDNFDSATNKEGATDIAFSDVTVTGS 1464

Query: 162  FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA--NNWSNASD 219
             +  + G            + + V     + +   +   +      + W   +N+ +A D
Sbjct: 1465 VNTAVAGVYPVTYTYNGVSKKINV---TVKAIKTAVNAHDSTIYTGDTWNARDNFDSALD 1521

Query: 220  HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQ 279
             +          +  S N N  G   I +     ++ ++  + +    +          +
Sbjct: 1522 KDGNSVAFADVTVTGSVNTNETGTNTITYSYDGVSQTITVTVVENKEGISAHDSTIYAGE 1581

Query: 280  GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
              +           ++ N +       N  ++ D  +++   V+   A
Sbjct: 1582 SWN-----------AKDNFDSAFDKDGNAVDLEDVTVTEKPTVDTTKA 1618


>gi|238916200|ref|YP_002929717.1| flagellar hook-associated protein 3 FlgL [Eubacterium eligens ATCC
           27750]
 gi|238871560|gb|ACR71270.1| flagellar hook-associated protein 3 FlgL [Eubacterium eligens ATCC
           27750]
          Length = 518

 Score = 39.7 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query: 221 NIKYRIKDTEGIDV----SANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLST 276
           +I  +I   E +      S + +   ++ IM       +F    +   A      +M   
Sbjct: 382 DIDAQISKVESMQKDSQYSDDASQEKLKTIMEGLTKQRDFAKSEM-KNAFEAGIGQMQGY 440

Query: 277 VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLIN 336
           + Q    +   +A +G  +  ++  +  L  +        S++  ++        ++   
Sbjct: 441 MDQ----VSNAKADVGNRQIRLDLTKTRLTEQKTNFTDLKSQNEDIDLEEIVVTYTSAEL 496

Query: 337 KIEMSYMITTKLQKLSILNYL 357
             + +    +K+ + S+L++L
Sbjct: 497 VYQAALSAASKVVQQSLLDFL 517



 Score = 37.8 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 72/248 (29%), Gaps = 17/248 (6%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+   +        +        L  E+ T +               L      + + + 
Sbjct: 3   ITNQMMINSSISNIQVNKNQINTLSTELSTQKKISKPSDDPIIAIRALRLRSSLDEVTQY 62

Query: 66  LHSN-SLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
           L  N    +  LS +   L     I++D+    V         ++    A  L    E++
Sbjct: 63  LGKNIPDASSWLSVTHDALDESNSIIKDLYKYCVQGSTDSYSESERNTLAESLNKLVEAY 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAK-------------KSFDQMLQGFLE 171
               N+   G+Y+F+G  +  +PL      D+                 +       +  
Sbjct: 123 YEQGNVDYAGRYVFTGHATD-RPLTYQSDADAKNVDYSITQNFTREDLSTKTAYTNAYSN 181

Query: 172 ENSKSLLAGQHLEVSSMNAQ-QMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTE 230
           ++  +L        + +    Q  + I+   D+ +    +     N +  N+      T 
Sbjct: 182 DDILNLTVKTDANGNIITPNIQSVNRIQLAYDEINGGT-FTLGMGNNNSANVTINADGTV 240

Query: 231 GIDVSANV 238
            ++ S   
Sbjct: 241 TMNGSLTA 248


>gi|86157769|ref|YP_464554.1| flagellar hook-associated protein FlgL [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774280|gb|ABC81117.1| flagellar hook-associated protein FlgL [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 294

 Score = 39.7 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 25/105 (23%)

Query: 56  EQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAG 115
                 +     +    +  L+   A L  +   +               D  +    A 
Sbjct: 53  RVTVARMDAIATATGRASDELAAVDAALGEVATGLARAQELATRYASAPYDAAQRASGAR 112

Query: 116 MLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKK 160
            +R    S V    +   G+YL  G      P +        A  
Sbjct: 113 EVRGILASAVASLGVKVGGRYLLGGFRDGAPPFDAGGAYQGDAGV 157


>gi|329727598|gb|EGG64054.1| putative methyl-coenzyme M reductase, alpha subunit [Staphylococcus
            aureus subsp. aureus 21172]
          Length = 10547

 Score = 39.7 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 6572 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|328467116|gb|EGF38206.1| hypothetical protein LM1816_05083 [Listeria monocytogenes 1816]
          Length = 1971

 Score = 39.7 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 78/288 (27%), Gaps = 25/288 (8%)

Query: 50   TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIV----QDMVGPLVILLEGKT 105
               L   +       +   NS    RL + Q   + +  I     Q  V PL   +   +
Sbjct: 1346 AQALTLAKTAAFEEVKDGVNSSAEDRLDSVQVSQTQLDAIKNGSNQGSVYPLTYSITKDS 1405

Query: 106  DNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKP----LNGYFTKDSLAKKS 161
                  I   + +D   +     +    G    +  N                D     S
Sbjct: 1406 KTVSVTIQVTVAKD-LTAVNAHDSTIYIGDAWEAKDNFDSATNKEGATDIAFSDVTVTGS 1464

Query: 162  FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA--NNWSNASD 219
             +  + G            + + V     + +   +   +      + W   +N+ +A D
Sbjct: 1465 VNTAVAGVYPVTYTYNGVSKKINV---TVKAIKTAVNAHDSTIYTGDTWNARDNFDSALD 1521

Query: 220  HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQ 279
             +          +  S N N  G   I +     ++ ++  + +    +          +
Sbjct: 1522 KDGNSVAFADVTVTGSVNTNETGTNTITYSYDGVSQTITVTVVENKEGISAHDSTIYAGE 1581

Query: 280  GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
              +           ++ N +       N  ++ D  +++   V+   A
Sbjct: 1582 SWN-----------AKDNFDSAFDKDGNAVDLEDVTVTEKPTVDTTKA 1618


>gi|224532856|ref|ZP_03673471.1| flagellar hook-associated protein 3 [Borrelia burgdorferi WI91-23]
 gi|224512245|gb|EEF82631.1| flagellar hook-associated protein 3 [Borrelia burgdorferi WI91-23]
          Length = 424

 Score = 39.7 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 42/99 (42%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L +    ++  + L+ + + L  ++   A LG  E  ++     +  +   +   + +
Sbjct: 325 DTLYNNKEELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKEAADMKEDMIQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  I+ K+ + ++L+++
Sbjct: 385 YTDLDVTKAITNLNMASLAYQVSIGISAKIMQTTLLDFI 423


>gi|216264188|ref|ZP_03436180.1| flagellar hook-associated protein 3 [Borrelia burgdorferi 156a]
 gi|224534091|ref|ZP_03674674.1| flagellar hook-associated protein 3 [Borrelia burgdorferi CA-11.2a]
 gi|225549797|ref|ZP_03770761.1| flagellar hook-associated protein 3 [Borrelia burgdorferi 118a]
 gi|215980661|gb|EEC21468.1| flagellar hook-associated protein 3 [Borrelia burgdorferi 156a]
 gi|224512790|gb|EEF83158.1| flagellar hook-associated protein 3 [Borrelia burgdorferi CA-11.2a]
 gi|225369605|gb|EEG99054.1| flagellar hook-associated protein 3 [Borrelia burgdorferi 118a]
 gi|312149722|gb|ADQ29793.1| flagellar hook-associated protein 3 [Borrelia burgdorferi N40]
          Length = 424

 Score = 39.7 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 42/99 (42%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L +    ++  + L+ + + L  ++   A LG  E  ++     +  +   +   + +
Sbjct: 325 DTLYNNKEELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKEAADMKEDMIQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  I+ K+ + ++L+++
Sbjct: 385 YTDLDVTKAITNLNMASLAYQVSIGISAKIMQTTLLDFI 423


>gi|15594527|ref|NP_212316.1| flagellar hook-associated protein FlgL [Borrelia burgdorferi B31]
 gi|221217535|ref|ZP_03589005.1| flagellar hook-associated protein 3 [Borrelia burgdorferi 72a]
 gi|226321500|ref|ZP_03797026.1| flagellar hook-associated protein 3 [Borrelia burgdorferi Bol26]
 gi|2688081|gb|AAC66578.1| flagellar hook-associated protein 3 (flgL) [Borrelia burgdorferi
           B31]
 gi|221192598|gb|EEE18815.1| flagellar hook-associated protein 3 [Borrelia burgdorferi 72a]
 gi|226232689|gb|EEH31442.1| flagellar hook-associated protein 3 [Borrelia burgdorferi Bol26]
 gi|312148539|gb|ADQ31198.1| flagellar hook-associated protein 3 [Borrelia burgdorferi JD1]
          Length = 424

 Score = 39.7 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 42/99 (42%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L +    ++  + L+ + + L  ++   A LG  E  ++     +  +   +   + +
Sbjct: 325 DTLYNNKEELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKEAADMKEDMIQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  I+ K+ + ++L+++
Sbjct: 385 YTDLDVTKAITNLNMASLAYQVSIGISAKIMQTTLLDFI 423


>gi|323158096|gb|EFZ44195.1| flagellar hook-associated protein 3 [Escherichia coli EPECa14]
          Length = 298

 Score = 39.7 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 97/340 (28%), Gaps = 47/340 (13%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           M      L+ D   + E+M TG+            T I +  ++++ I +   +    + 
Sbjct: 1   MTQSFNNLSGDLAHVVEQMATGKQILQPSDDPIAATRITQLNRQQSAIEQYQSNIDSASA 60

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-E 133
            LS  ++ L  +   +  +   L+    G    +        +    ES V   N  D +
Sbjct: 61  GLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTESMVAALNYQDED 120

Query: 134 GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQM 193
           G Y+F G  + + P+            S+        + NS          V        
Sbjct: 121 GHYVFGGTINDQPPIVAVDDDGDGVTDSYS------YQGNSDHRQTTVSNGVEVDTNVAA 174

Query: 194 TDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIG 253
           +DF     D  +     +    N        +++                          
Sbjct: 175 SDFFGSNLDVLNTLNSLSQELQNPDVDPADPQVQSD------------------------ 210

Query: 254 TEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
                            +  +  V      +    A LG ++  ++       + +   D
Sbjct: 211 ----------------IQNAVDVVDTASDDLNASIASLGETQNTMSMLSDAQTDISTSND 254

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             I     ++   A    + L   +E++    +K+ +L++
Sbjct: 255 ELIGSLQDLDYGPASITFTGLEVAMEVTLKTYSKVSELNL 294


>gi|223889254|ref|ZP_03623842.1| flagellar hook-associated protein 3 [Borrelia burgdorferi 64b]
 gi|223885287|gb|EEF56389.1| flagellar hook-associated protein 3 [Borrelia burgdorferi 64b]
          Length = 424

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 43/99 (43%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L +    ++  + L+ + + L  ++   A LG  E  ++     +  + + +   + +
Sbjct: 325 DTLYNNKEELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKEASDMKEDMIQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  I+ K+ + ++L+++
Sbjct: 385 YTDLDVTKAITNLNMASLAYQVSIGISAKIMQTTLLDFI 423


>gi|195941913|ref|ZP_03087295.1| flagellar hook-associated protein FlgL [Borrelia burgdorferi 80a]
          Length = 424

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 42/99 (42%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L +    ++  + L+ + + L  ++   A LG  E  ++     +  +   +   + +
Sbjct: 325 DTLYNNKEELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKEAADMKEDMIQ 384

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  I+ K+ + ++L+++
Sbjct: 385 YTDLDVTKAITNLNMASLAYQVSIGISAKIMQTTLLDFI 423


>gi|227820865|ref|YP_002824835.1| flagellin C protein [Sinorhizobium fredii NGR234]
 gi|227339864|gb|ACP24082.1| flagellin C protein [Sinorhizobium fredii NGR234]
          Length = 302

 Score = 39.7 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 97/351 (27%), Gaps = 62/351 (17%)

Query: 5   GISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE 64
            I T+S         + ++         + TG          A  +       +   ++ 
Sbjct: 3   SILTNSSATAALQTLRSISSSMEDTQNRISTGMRVGSASDNAAYWSIATTMRSDNAALSS 62

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
              +  +   ++ T+ A + +   +V+++   +V   E   D  K       L+D   S 
Sbjct: 63  VTDALGMGAAKVDTAYAGMEAAIDVVKEIKAKIVAATEEGVDGAKVQEEIDQLQDQLLSI 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              A  +  G+   +G                     F +   G +   + S       +
Sbjct: 123 AESA--SFNGENWIAG-----------EAATKTVVTGFVRASDGTVSIKTSSYTLTDAAD 169

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            + + A      +                                       N N     
Sbjct: 170 GTLLFADDGAGGLDTATGILG---------------------------TAGTNGND---- 198

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                           +   A      + LS V+  L+ +    + LG     I+ +  F
Sbjct: 199 --------VYGLDISAMDATA----LGEALSDVEDALTAMTSAASSLGSMSTRIDLQADF 246

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           +   ++ I+  I + +  + +    +L  L  + +++      +Q LSI N
Sbjct: 247 VSELSDSIENGIGRLVDADMNEESTRLKALQTQQQLA------IQALSIAN 291


>gi|240137251|ref|YP_002961720.1| putative flagellin (flaA-like; flaB-like) [Methylobacterium
           extorquens AM1]
 gi|240007217|gb|ACS38443.1| putative flagellin (flaA-like; flaB-like) [Methylobacterium
           extorquens AM1]
          Length = 452

 Score = 39.7 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
            +        A    +F    L     +     +++ V + ++ + +    LG S+  I+
Sbjct: 332 SQAGSYTAGGAYSIADFDISTLVGTNGDADLSAIITAVDKAIAKVTDAGTKLGASKTQID 391

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
            +  F+       +  I   +  +      +L  L  + +++      +Q LSI N
Sbjct: 392 GQSSFVDTLMKANNRTIGTLVDADIEEESTKLKALQTQQQLA------VQALSIAN 441


>gi|148266108|ref|YP_001232814.1| flagellar hook-associated protein 3 [Geobacter uraniireducens Rf4]
 gi|146399608|gb|ABQ28241.1| flagellar hook-associated protein 3 [Geobacter uraniireducens Rf4]
          Length = 298

 Score = 39.7 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 78/282 (27%), Gaps = 57/282 (20%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQ 135
           L+ + + ++ M  ++       V +     + +        L+      +T  N    G+
Sbjct: 73  LTMADSAMAGMGDVLSRAKELAVAMSSDTNNADSRTAAVNELQQLKGQIITLGNTQLNGK 132

Query: 136 YLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTD 195
           Y+F G  +   P    F        + D +           +       V+         
Sbjct: 133 YIFGGFKNDTPP----FDAAGNFTGTNDDINIEIERGTFLPVNYAGDKLVNGGTPA---- 184

Query: 196 FIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTE 255
                              S+ +D      IK  + +  + N                  
Sbjct: 185 ------------------GSSGTDI-----IKIFDNLVTALNAGST-------------- 207

Query: 256 FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY 315
                          +  L  +   +S ++  R+ +G     ++       N    +   
Sbjct: 208 ------------SAVQAELPNLDSAMSQVLAARSDVGARMNRLDGSSQVNDNTKLSLTKI 255

Query: 316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           +S    V+     + LS      + +   + K+ ++++L+YL
Sbjct: 256 LSNIQDVDYMQVISDLSKQQTAYQAAIAASAKISQVTLLDYL 297


>gi|292489126|ref|YP_003532013.1| flagellar hook-associated protein 3 FlgL [Erwinia amylovora
           CFBP1430]
 gi|292900245|ref|YP_003539614.1| flagellar hook-associated protein 3 [Erwinia amylovora ATCC 49946]
 gi|291200093|emb|CBJ47219.1| flagellar hook-associated protein 3 [Erwinia amylovora ATCC 49946]
 gi|291554560|emb|CBA22167.1| Flagellar hook-associated protein 3 FlgL [Erwinia amylovora
           CFBP1430]
 gi|312173284|emb|CBX81539.1| Flagellar hook-associated protein 3 FlgL [Erwinia amylovora ATCC
           BAA-2158]
          Length = 302

 Score = 39.7 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 34/316 (10%), Positives = 86/316 (27%), Gaps = 69/316 (21%)

Query: 47  ARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKI-VQDMVGPLVILLEGKT 105
                 +  +     +     + + V   +    + LSS+ K+  +++   LV  + G  
Sbjct: 44  GGAADAVIMQNALAKMELYKDARAGVRSGMEQEDSTLSSVGKLLTKNLSEKLVAAMNGTL 103

Query: 106 DNNKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
                 +    +    ++ +  AN  D  G+Y+FSG  ++    +     D    +  D 
Sbjct: 104 SEEDRAVLGQEIEGISKNMLDLANTRDGSGRYIFSGFKTATAAFD-----DQGNYQGGDT 158

Query: 165 MLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY 224
            +   + +                    M       +   S                   
Sbjct: 159 AIHQTVAD-----------------GSDMQTSHLGSDIFMSGTG---------------- 185

Query: 225 RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGI 284
                              +++       +E     + +             V  G+  +
Sbjct: 186 ---------------SDLFKNLQEA---VSELTKSPIDEEQLKSALGAASKAVDAGIDRL 227

Query: 285 IEQRAVLGISEKNINEERVFLQNKN-NIIDTYISKSIGVEQHTAHAQLSTLINK------ 337
            + +A LG   + +      L  +  +  +  + K           Q++ +         
Sbjct: 228 GKVQADLGTQLQQL----DALDIQADDDFNAMVGKLQSALGADTSTQINLIQRTKMAEVV 283

Query: 338 IEMSYMITTKLQKLSI 353
           +E S  +   +QK+S+
Sbjct: 284 MEASMKVFQSMQKMSL 299


>gi|167769546|ref|ZP_02441599.1| hypothetical protein ANACOL_00880 [Anaerotruncus colihominis DSM
           17241]
 gi|167668514|gb|EDS12644.1| hypothetical protein ANACOL_00880 [Anaerotruncus colihominis DSM
           17241]
          Length = 390

 Score = 39.7 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/176 (9%), Positives = 50/176 (28%), Gaps = 1/176 (0%)

Query: 148 LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDD 207
           ++   T     K         F    +         +VS +   ++      +   FS D
Sbjct: 179 ISADKTGTVTVKAGGKATGVKFTVTQTGKGFYSVTADVSGVTDDKIKAAWSGVTANFSVD 238

Query: 208 EYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARN 267
               +    A +        ++  + +    +      +   ++         +    + 
Sbjct: 239 GPKDDGTYAAGEQKFTAGKNESMQLQIGDTADSFNQLKVGIGSMSSAALGVDKVDISNQE 298

Query: 268 VLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
               K +  ++  +  +  QRA LG ++  +      L   +  + +  S+    +
Sbjct: 299 G-AAKAIDIIRNAIDRVSSQRASLGATQNRLEYTINNLDTASENLQSANSRIRDTD 353


>gi|292660173|gb|ADE34755.1| spike glycoprotein [Bat SARS coronavirus HKU3-7]
          Length = 1242

 Score = 39.7 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 5/127 (3%)

Query: 229 TEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTD----GARNVLTKKMLSTVQQGLSGI 284
           +                I F   +   F    +T       + ++  +  S + +    +
Sbjct: 848 SGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSL 907

Query: 285 IEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMI 344
               + LG  +  +N+    L      + +       V  +   ++L  +  ++++  +I
Sbjct: 908 SSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSV-LNDILSRLDKVEAEVQIDRLI 966

Query: 345 TTKLQKL 351
           T +LQ L
Sbjct: 967 TGRLQSL 973


>gi|258444769|ref|ZP_05693098.1| cell surface protein [Staphylococcus aureus A8115]
 gi|282892930|ref|ZP_06301165.1| extracellular matrix-binding protein ebh [Staphylococcus aureus
            A8117]
 gi|257850262|gb|EEV74215.1| cell surface protein [Staphylococcus aureus A8115]
 gi|282764927|gb|EFC05052.1| extracellular matrix-binding protein ebh [Staphylococcus aureus
            A8117]
          Length = 10473

 Score = 39.7 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 6572 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|292660185|gb|ADE34766.1| spike glycoprotein [Bat SARS coronavirus HKU3-8]
          Length = 1242

 Score = 39.7 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 5/127 (3%)

Query: 229 TEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTD----GARNVLTKKMLSTVQQGLSGI 284
           +                I F   +   F    +T       + ++  +  S + +    +
Sbjct: 848 SGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSL 907

Query: 285 IEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMI 344
               + LG  +  +N+    L      + +       V  +   ++L  +  ++++  +I
Sbjct: 908 SSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSV-LNDILSRLDKVEAEVQIDRLI 966

Query: 345 TTKLQKL 351
           T +LQ L
Sbjct: 967 TGRLQSL 973


>gi|291288371|ref|YP_003505187.1| flagellin domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885531|gb|ADD69231.1| flagellin domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 1284

 Score = 39.7 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 274  LSTVQQGLSGIIEQRAVLGISEKNINEE---RVFLQNKNNIIDTYISKSIGVEQHTAHAQ 330
            +  ++   S I     ++G  E            L   +  +    + S  ++Q  A   
Sbjct: 1198 MKVMETAESQIHTALTIVGNRENRAESAVTFNESLITASEKLKAEYTGSTTMDQAAAATN 1257

Query: 331  LSTLINKIEMSYMITTKLQKLSILNYL 357
             +      + +   T ++ ++S+L+YL
Sbjct: 1258 YTVAQTVYQSALAATAQILQISLLDYL 1284



 Score = 37.0 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 77  STSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQY 136
           S  Q   S + +   ++    V       D +     AG + + YE  +  AN     +Y
Sbjct: 78  SILQTASSILSRAKDEL---AVAGKNDSQDADSRKALAGEVMNIYEELLDLANSKYLDRY 134

Query: 137 LFSGINSSEKPLNGYFTKDSLAKKSFDQ--MLQGFLEENSKSLLAGQ 181
           +F G  + E P      + +    S D        L  +   L  G 
Sbjct: 135 IFGGYETEEAPFTSGDRQVTSVVSSMDDGEAFSSRLYSDMPDLAKGS 181


>gi|254423112|ref|ZP_05036830.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196190601|gb|EDX85565.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 566

 Score = 39.7 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 39  SDYGLQLGARVTSI-LEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPL 97
           +D G+Q G   T   +   Q+   +A    +N+L+ KRL ++QA L       Q +   L
Sbjct: 107 ADLGIQSGGETTVALVNTLQDMTALACIRENNNLLHKRLESNQAKLRK----AQQLESTL 162

Query: 98  VILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF---SGINS 143
             + +   ++        +L+ +    V   N       L+    G ++
Sbjct: 163 KRITDRVRESLD---EQQILQTAVNELVEVLNAKAANTALYDLEQGTST 208


>gi|160878465|ref|YP_001557433.1| flagellar hook-associated protein 3 [Clostridium phytofermentans
           ISDg]
 gi|160427131|gb|ABX40694.1| flagellar hook-associated protein 3 [Clostridium phytofermentans
           ISDg]
          Length = 514

 Score = 39.7 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 44/147 (29%), Gaps = 2/147 (1%)

Query: 1   MKTTG-ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEK 59
           M+ +  I+   +   +            K  ++  TG+      +        L+     
Sbjct: 1   MEVSMRITNKMMTNNVLYNINNNKNSLSKTEQQYSTGKKIQRPSEDPIVAVRALKLRTNL 60

Query: 60  NHIAERLHSN-SLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLR 118
             + +    N       +  +++ LS++ +I+  +    V               A  L 
Sbjct: 61  TELNQYYEKNIPDALAWMDLTESSLSNINEILTKIHTYCVNGANDTLTEEDRNSLAVNLN 120

Query: 119 DSYESFVTFANMTDEGQYLFSGINSSE 145
              +      N    G+Y+FSG  +  
Sbjct: 121 QLKDQIYQEGNTNYAGRYVFSGYKTDS 147



 Score = 37.4 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 2/137 (1%)

Query: 221 NIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG 280
            +  +I +   +  S N+       +     + T    K L D          LS +++ 
Sbjct: 380 AVDKKISEVNKMLASGNITEEQKTTLNQALEVLTA--EKILKDEVMQKTFGSALSGIKEQ 437

Query: 281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEM 340
            + I    + LG     I      L  +    +  +SK+   +      ++ +  +    
Sbjct: 438 QNIINVAVSDLGSRSVRIQLTESRLSMEQVDFEDLLSKNEDADIVDTIIKMKSQESVYNA 497

Query: 341 SYMITTKLQKLSILNYL 357
           S     K+ K S+L++L
Sbjct: 498 SLSAAAKIVKNSLLDFL 514


>gi|260767930|ref|ZP_05876864.1| flagellar hook-associated protein FlgL [Vibrio furnissii CIP
           102972]
 gi|260615960|gb|EEX41145.1| flagellar hook-associated protein FlgL [Vibrio furnissii CIP
           102972]
 gi|315179633|gb|ADT86547.1| flagellar hook-associated protein L [Vibrio furnissii NCTC 11218]
          Length = 299

 Score = 39.7 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 118/355 (33%), Gaps = 65/355 (18%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTG----QSSDYGLQLGARVTSILEWEQEKNH 61
           IS +   + M    +  N    K+ ++M TG    + SD  +        +L  ++E + 
Sbjct: 3   ISDTQFSQMMLQSLQLNNAGLGKVMQQMSTGDRLTKLSDDPMA----SIKLLNLDREGSA 58

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           I +   + + V   LS+ + +L S+ + ++ +   ++    G    +        L+   
Sbjct: 59  IEQYQANIANVKTTLSSQEVYLDSVNESLKSIRERVLWGANGTMTTDDREGIVTELKSLR 118

Query: 122 ESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +S  +  N  DE G +LFSG  +S   L+                       +  S +  
Sbjct: 119 DSIASSFNAQDEEGHFLFSGTATSTAALDN----------------------SGGSYVLQ 156

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
            + +   +                            A    ++  +   + +D+    N+
Sbjct: 157 GNSDKRVVTV--------------------------AKGVTMESNMTAQDILDLGGGSNV 190

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                +  +  + +EF +               L+ V   L+ ++     +G    N++ 
Sbjct: 191 -----LNTLDALISEFEAPTAN---FRTEVDNTLAAVDSTLNNVLAAMTEIGGRHNNLDL 242

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
                 +    +D   S    ++   A  +LS  +  ++ +     K+  LS+ +
Sbjct: 243 LDSAHGDNKLFVDKVTSDLSALDYGEASVRLSNYMAALQATQASYVKIDDLSLFD 297


>gi|331645425|ref|ZP_08346529.1| flagellar hook-associated protein 3 [Escherichia coli M605]
 gi|331045587|gb|EGI17713.1| flagellar hook-associated protein 3 [Escherichia coli M605]
          Length = 317

 Score = 39.3 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 99/349 (28%), Gaps = 47/349 (13%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           ++T   +  M      L+     + E+M TG+            T I +  ++++ I + 
Sbjct: 11  VTTQQTYVSMTQSFNNLSGSLAHVVEQMATGKEILQPSDDPIAATRITQLNRQQSAIEQY 70

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +    +  LS  ++ L  +   +  +   L+    G    +        +    +S V
Sbjct: 71  QSNIDSASAGLSQQESILDGVNNSLLAVRDDLLEAANGTNTADSLASLGQDIESLTDSMV 130

Query: 126 TFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
              N  D +G Y+F G  + + P+            S+        + NS          
Sbjct: 131 AALNYQDEDGHYVFGGTINDQPPIVAVDDDGDGVTDSYS------YQGNSDHRQTTVSNG 184

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
           V        +DF     D  +     +    N        +++                 
Sbjct: 185 VEVDTNVAASDFFGSNLDVLNTLNSLSQELQNPDVDPADPQVQSD--------------- 229

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
                                     +  +  V      +    A LG ++  ++     
Sbjct: 230 -------------------------IQNAVDVVDTASDDLNASIASLGETQNTMSMLSDA 264

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + +   D  I     ++   A    + L   +E +    +K+ +L++
Sbjct: 265 QTDISTSNDELIGSLQDLDYGPASITFTGLEVAMEATLKTYSKVSELNL 313


>gi|320142680|gb|EFW34483.1| signal peptide, YSIRK family [Staphylococcus aureus subsp. aureus
            MRSA177]
          Length = 10498

 Score = 39.3 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
             +++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 IQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
             S    N +                 ++ +                V    +G+      
Sbjct: 6572 ASGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|107023945|ref|YP_622272.1| flagellar hook-associated protein FlgL [Burkholderia cenocepacia AU
           1054]
 gi|116691032|ref|YP_836655.1| flagellar hook-associated protein FlgL [Burkholderia cenocepacia
           HI2424]
 gi|254246971|ref|ZP_04940292.1| Flagellin [Burkholderia cenocepacia PC184]
 gi|105894134|gb|ABF77299.1| Flagellar hook-associated protein 3 [Burkholderia cenocepacia AU
           1054]
 gi|116649121|gb|ABK09762.1| flagellar hook-associated protein 3 [Burkholderia cenocepacia
           HI2424]
 gi|124871747|gb|EAY63463.1| Flagellin [Burkholderia cenocepacia PC184]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 68/185 (36%), Gaps = 3/185 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  ++       +      +L++++ +G S              ++       +++ 
Sbjct: 3   ISTAQFYQMNVAQMSDQQAQLSQLYQQISSGVSLATPADNPLGAAQAVQLSMTSATLSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     L      L S+  ++  +   ++   +G   ++     +  L+   +  +
Sbjct: 63  ASNQNAALSSLQKEDQTLISVNNLLNSIHTVVIQAGDGSLSDSDRSALSTQLQGYRDQLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           T AN TD  G YLF+G  S+  P +           S D   +     +++S+  G +  
Sbjct: 123 TLANSTDGSGNYLFAGFQSATAPFSN--APGGGVTYSGDTGSRQVQIADTRSIAQGDNGA 180

Query: 185 VSSMN 189
              ++
Sbjct: 181 NVFLS 185


>gi|269940929|emb|CBI49313.1| very large surface anchored protein [Staphylococcus aureus subsp.
            aureus TW20]
 gi|302751265|gb|ADL65442.1| extracellular matrix binding protein [Staphylococcus aureus subsp.
            aureus str. JKD6008]
          Length = 10421

 Score = 39.3 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
             +++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 IQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
             S    N +                 ++ +                V    +G+      
Sbjct: 6572 ASGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|160896072|ref|YP_001561654.1| flagellar hook-associated protein 3 [Delftia acidovorans SPH-1]
 gi|160361656|gb|ABX33269.1| flagellar hook-associated protein 3 [Delftia acidovorans SPH-1]
          Length = 399

 Score = 39.3 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 50/398 (12%), Positives = 114/398 (28%), Gaps = 41/398 (10%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M  + I T+++++         N   V L E+  +G+                      +
Sbjct: 1   MSISRIGTANMYDSTINNLNSRNTSLVDLMEKTTSGKRVVRASDDPVAAAQAERALTRIS 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
                     L    ++  ++ L + Q  ++D    ++    G  D          L   
Sbjct: 61  RSENDQRVLGLQRDVMAQGESKLGTAQDALKDFRDLILQSGNGSYDQKARDALVQQLESL 120

Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYF---------TKDSLAKKSFDQMLQGFL 170
               +++AN  D  G  +F G+ S E PL              + + ++      L GF 
Sbjct: 121 RNQVLSYANAKDSNGLPIFRGLGSKEDPLVNSTPGANSQLQPGQATGSENGLPLALDGFA 180

Query: 171 E--ENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWS------------- 215
                            S   +    D     +        +  N++             
Sbjct: 181 TWMNVPTGNGVFAVSRQSPTGSSAYADLGTVSDPSAITGASYTLNFTKDATTGALSYTVT 240

Query: 216 -----------NASD----HNIKYRIKDT-EGIDVSANVNMRGIRDIMFVAVIGTEFLSK 259
                       A D      +  +I       D       +       +  +     + 
Sbjct: 241 SGGTTGTAVPYTAGDSITVGGMSMKISGNLATGDSFTLAPSQRTDLFSVLDNVIAGVKNG 300

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
               GA      + L+ +  G+S +   R+  G      +     ++N+ +  +   S++
Sbjct: 301 ATDAGAMQQALGRGLNELDAGMSRVQAMRSFAGDQLNRADRLEDDMKNQADQQEAARSRA 360

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             ++   A + +      ++ +      +QKLS+ N++
Sbjct: 361 EDIDMIKALSDVDMQKVGMQAALQSYASIQKLSLFNFI 398


>gi|329314112|gb|AEB88525.1| Extracellular matrix binding protein [Staphylococcus aureus subsp.
            aureus T0131]
          Length = 10421

 Score = 39.3 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
             +++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 IQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
             S    N +                 ++ +                V    +G+      
Sbjct: 6572 ASGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|57651379|ref|YP_186319.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus subsp. aureus COL]
 gi|81694497|sp|Q5HFY8|EBH_STAAC RecName: Full=Extracellular matrix-binding protein ebh; AltName:
            Full=ECM-binding protein homolog; Flags: Precursor
 gi|57285565|gb|AAW37659.1| Cell wall associated fibronectin-binding protein [Staphylococcus
            aureus subsp. aureus COL]
          Length = 10498

 Score = 39.3 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
             +++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 IQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
             S    N +                 ++ +                V    +G+      
Sbjct: 6572 ASGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|315197822|gb|EFU28156.1| extracellular matrix binding protein [Staphylococcus aureus subsp.
            aureus CGS01]
          Length = 10421

 Score = 39.3 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
             +++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 IQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
             S    N +                 ++ +                V    +G+      
Sbjct: 6572 ASGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|87161956|ref|YP_494024.1| cell surface protein [Staphylococcus aureus subsp. aureus
            USA300_FPR3757]
 gi|161509602|ref|YP_001575261.1| extracellular matrix binding protein [Staphylococcus aureus subsp.
            aureus USA300_TCH1516]
 gi|123485939|sp|Q2FH04|EBH_STAA3 RecName: Full=Extracellular matrix-binding protein ebh; AltName:
            Full=ECM-binding protein homolog; Flags: Precursor
 gi|205716446|sp|A8Z414|EBH_STAAT RecName: Full=Extracellular matrix-binding protein ebh; AltName:
            Full=ECM-binding protein homolog; Flags: Precursor
 gi|87127930|gb|ABD22444.1| cell surface protein [Staphylococcus aureus subsp. aureus
            USA300_FPR3757]
 gi|160368411|gb|ABX29382.1| extracellular matrix binding protein [Staphylococcus aureus subsp.
            aureus USA300_TCH1516]
          Length = 10421

 Score = 39.3 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
             +++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 IQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
             S    N +                 ++ +                V    +G+      
Sbjct: 6572 ASGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|238785490|ref|ZP_04629473.1| Flagellar hook-associated protein 3 [Yersinia bercovieri ATCC
           43970]
 gi|238713592|gb|EEQ05621.1| Flagellar hook-associated protein 3 [Yersinia bercovieri ATCC
           43970]
          Length = 320

 Score = 39.3 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/336 (10%), Positives = 100/336 (29%), Gaps = 31/336 (9%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
                   ++  +++ TG+            +  +   Q ++   +   + S     LS 
Sbjct: 10  VSTAQSLWMQSGQQLSTGKRVVNPSDDPMAASQAVMVSQSQSENNQYTLARSFARNELSQ 69

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN-MTDEGQYL 137
               L  +   +Q +   ++        ++     A  L+   +  +  AN     G+Y 
Sbjct: 70  ETKTLEQVTSTIQSIQSIIISAKSDVLSDDDRASYATQLQGLKDQLLNQANSTNGSGRYA 129

Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
           F+   S + P         +  +  D  ++  ++ +    +      V            
Sbjct: 130 FAAFKSDKPPFV-VSATGEVTYQGGDVAIEQKVDASRSMTIGHTGTSVFMALTSNAK--- 185

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
            + +D   +      N  N  D  +K        +    +     +++     +      
Sbjct: 186 PEPDDAAGNPVASEANIFNTIDTVLKS-------LKTPLSGATDAVKEQAQADM------ 232

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
                         K +  +   L+ ++  ++ +G   + ++       ++       ++
Sbjct: 233 -------------DKGIRGMANSLNNVLSVQSEVGTQLQELDNLDSLGSDRTLSNKQRLT 279

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
             + V+   A +        ++ SY   T +Q LS+
Sbjct: 280 DLVDVDYTAAISSYVMQQAALQASYTTFTNMQGLSL 315


>gi|325524326|gb|EGD02428.1| flagellar hook-associated protein FlgL [Burkholderia sp. TJI49]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 38/365 (10%), Positives = 96/365 (26%), Gaps = 55/365 (15%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
                ++       +++   + ++    L      L+++  ++  +   ++   +G   +
Sbjct: 45  GAAQAVQLSMTSATLSQYATNQNVALSSLQKEDQTLTTVNNLLNTIHSSVMQAGDGSLSD 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFT------------- 153
           +     A  L+   +  +T AN TD  G YLF+G  S+  P +                 
Sbjct: 105 SDRSAIATQLQGYRDQLMTLANTTDGAGNYLFAGYQSTTAPFSNSTGGGAIYSGDRGARQ 164

Query: 154 ---KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYW 210
               D+      D     F+                ++    +           ++   +
Sbjct: 165 VQIADTRTIAQGDDGASVFMSVPMLGSQPVPAAGARNLGTGTIGAVSITDPSAATNTHQF 224

Query: 211 ANNWSNASDHNI----------------------------------KYRIKDTEGIDVSA 236
              +   SD                                           +       
Sbjct: 225 TITFGGTSDAPTYTVTDNTATPATTTDPQPYEAGTAIALGNGLTVPVSGTPASGDTFSVT 284

Query: 237 NVNMRGIRDIMFVAVIGTEF----LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLG 292
                G      +  +         +      A         + +   ++ I+  +A +G
Sbjct: 285 PAPQAGTDVFATLDTMIAALKVPVGNDTAAAAALANTMTTGTTKLDNTMTNILTVQASVG 344

Query: 293 ISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLS 352
             E+ I   +   Q     + + ++        T  +Q   + N +  +     +LQ LS
Sbjct: 345 GREQEIQAMQAVNQTNTLQVTSNLADVTSTNMVTTISQFLQMQNALTGAQKAYAQLQNLS 404

Query: 353 ILNYL 357
           +  Y+
Sbjct: 405 LFQYI 409


>gi|258422532|ref|ZP_05685440.1| large surface anchored protein [Staphylococcus aureus A9635]
 gi|257847289|gb|EEV71295.1| large surface anchored protein [Staphylococcus aureus A9635]
          Length = 7732

 Score = 39.3 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 112/361 (31%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q ++    L             K ++    H
Sbjct: 5443 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTNAKNALNGDANVRQAKSDAKANLGTLTH 5502

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   N   +    
Sbjct: 5503 LNNAQKQDLTSQIEDATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKANENYIDADP 5562

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 5563 TKKTAFDNAITQAESYLNKDH---GANKDKQAVEQTIQSVTSTENALNGDANLQRAKTEA 5619

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A + ++A D  +K  I D + I 
Sbjct: 5620 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNSAMDQ-LKQAIADHDTIV 5678

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    +G+      
Sbjct: 5679 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 5737

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 5738 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 5797

Query: 343  M 343
             
Sbjct: 5798 A 5798


>gi|293115383|ref|ZP_05791245.2| flagellar hook-associated protein 3 [Butyrivibrio crossotus DSM
           2876]
 gi|292810061|gb|EFF69266.1| flagellar hook-associated protein 3 [Butyrivibrio crossotus DSM
           2876]
          Length = 491

 Score = 39.3 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 50/137 (36%), Gaps = 2/137 (1%)

Query: 221 NIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG 280
           +I+ +I   + +  S   +    ++I    +I       +           K ++ V++ 
Sbjct: 357 DIENKIAKLKTMKESGAYSDDEKKNI--DTMIAASEKEHDYALDNMKKTFSKEITNVKEY 414

Query: 281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEM 340
              +  + A LG  +  +   +  L  +    D   S++  V+      + S+     + 
Sbjct: 415 QQTVSLELADLGARQNRLTLTKDRLSEQYTTFDDLKSRNEDVDLEDVVIKFSSARTLYQA 474

Query: 341 SYMITTKLQKLSILNYL 357
           +    +   + S+L+Y+
Sbjct: 475 ALSAASSCVQKSLLDYI 491



 Score = 37.8 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 56/187 (29%), Gaps = 5/187 (2%)

Query: 11  IFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSN- 69
           + + +     +   +      E+ T +               L      + I + L  N 
Sbjct: 3   MNQTLRN-VSKSKNNLNTSENELATEKKITRPSDDPIVAIRALSLRSSLSEINQYLKHNI 61

Query: 70  SLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN 129
                 L  + + L++M  I+ D+          +   N       +L+    +  + AN
Sbjct: 62  PDAESWLDVTHSSLNNMDGILSDIFQYCNQGSSDQFTTNDRSAIIDVLKQYRTAIYSEAN 121

Query: 130 MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN 189
               G+Y F+G  +         + +S  K    +  +   E  +   +    ++ + + 
Sbjct: 122 ADYAGRYCFTGYKTDTS-FTFLTSTESDKKYEITETFKA--EAVTTDNIMKNSVDATKVT 178

Query: 190 AQQMTDF 196
                 +
Sbjct: 179 GINAEKY 185


>gi|317156379|ref|XP_001825702.2| C6 transcription factor [Aspergillus oryzae RIB40]
          Length = 598

 Score = 39.3 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 32  EMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQ 91
           ++ T QS+D  L+L  +    +   + +  +AE          R++  +  + S+   + 
Sbjct: 6   QIATRQSADVCLRLKRKCQLSVSVRRRRGLMAEGFDM------RIARLEEKMESLLAAMD 59

Query: 92  DMVGPLVILL----EGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKP 147
             V     L+      ++       +  M    +   +  +N T          +++  P
Sbjct: 60  TFVSSSGSLVGLADTTRSGATSISASVNMTSSGFSERLALSNTTVS-------THTNSSP 112

Query: 148 LNGYFTKDSLAK 159
            +        A 
Sbjct: 113 CSDSSAPSPTAS 124


>gi|224534347|ref|ZP_03674925.1| flagellar hook-associated protein 3 [Borrelia spielmanii A14S]
 gi|224514449|gb|EEF84765.1| flagellar hook-associated protein 3 [Borrelia spielmanii A14S]
          Length = 424

 Score = 39.3 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 39/92 (42%)

Query: 266 RNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
             ++  + L+ +   L  ++   A LG  E  ++     +  +   +   + +   ++  
Sbjct: 332 EELVGSRSLAEIDGSLKRLLISVADLGAKENRLDRSYERISKETADMKEDMVQYTDLDVT 391

Query: 326 TAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            A   L+      ++S  I+ K+ + ++L+++
Sbjct: 392 KAITNLNMASLAYQVSLGISAKIMQTTLLDFI 423


>gi|253733319|ref|ZP_04867484.1| extracellular matrix binding protein [Staphylococcus aureus subsp.
            aureus TCH130]
 gi|253728859|gb|EES97588.1| extracellular matrix binding protein [Staphylococcus aureus subsp.
            aureus TCH130]
          Length = 10547

 Score = 39.3 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A +  NA D  +K  I D + I 
Sbjct: 6513 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLDNAMDQ-LKQGIADHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +    + 
Sbjct: 6572 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DSN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|10281324|gb|AAG14365.1| flagellin B [Agrobacterium sp. H13-3]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 277 VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLIN 336
           V++ L+ +    A LG  +  I+ +  F    ++ ID  I + +  + +    +L  L  
Sbjct: 327 VEKALTSLTSAAAELGSIKMRIDLQEDFASKLSDSIDKGIGRLVDADMNEESTKLKALQT 386

Query: 337 KIEMSYMITTKLQKLSILN 355
           + +++      +Q LSI N
Sbjct: 387 QQQLA------IQSLSIAN 399


>gi|32473855|ref|NP_866849.1| flagellar hook-associated protein 3 [Rhodopirellula baltica SH 1]
 gi|32444391|emb|CAD74390.1| probable flagellar hook-associated protein 3 [Rhodopirellula
           baltica SH 1]
          Length = 651

 Score = 39.3 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 40/88 (45%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
             ++ + + + L      R  +G+    + + R  ++N+N ++ + +S ++  +     +
Sbjct: 564 IGRLQARLDEDLDDSTRTRGRVGVWHSALQDSRTAVENENVLLQSQLSDAMDADLAVVIS 623

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           +L      +E S     +   +++LNYL
Sbjct: 624 ELQARQVALEASMRFVGQTSGITVLNYL 651


>gi|325291931|ref|YP_004277795.1| Flagellin B protein [Agrobacterium sp. H13-3]
 gi|325059784|gb|ADY63475.1| Flagellin B protein [Agrobacterium sp. H13-3]
          Length = 411

 Score = 39.3 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 277 VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLIN 336
           V++ L+ +    A LG  +  I+ +  F    ++ ID  I + +  + +    +L  L  
Sbjct: 327 VEKALTSLTSAAAELGSIKMRIDLQEDFASKLSDSIDKGIGRLVDADMNEESTKLKALQT 386

Query: 337 KIEMSYMITTKLQKLSILN 355
           + +++      +Q LSI N
Sbjct: 387 QQQLA------IQSLSIAN 399


>gi|301053276|ref|YP_003791487.1| flagellar hook-associated protein [Bacillus anthracis CI]
 gi|300375445|gb|ADK04349.1| flagellar hook-associated protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 287

 Score = 39.3 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 52/148 (35%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ + +  +     +     +    +I + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLFMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K V      ++  L  +    +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVLKSVTRTDQLMLQALSEQNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ ++P     T
Sbjct: 123 YLANTKEQGRYIFGGDSTEKQPFTEDGT 150


>gi|260439399|ref|ZP_05793215.1| flagellin [Butyrivibrio crossotus DSM 2876]
 gi|292808195|gb|EFF67400.1| flagellin [Butyrivibrio crossotus DSM 2876]
          Length = 452

 Score = 39.3 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 12/175 (6%)

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
           S  A    E +++  + +  F   +E     D  +A     A+D  I         + + 
Sbjct: 280 SSTATLTTEGANITVKDIGSFEMDIEIP--GDTKYAECVIKATDIGI---------MRIQ 328

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE 295
           A  N      I    V        NL     +   K  ++ +   +S +   R+ LG  +
Sbjct: 329 AGANEGQQLSIGIPEVSMHTLGLDNLNLRTEDC-AKDAMTRLDDAISKVSSIRSKLGAYQ 387

Query: 296 KNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
             +      L   N  I   +S+    +      + +    K + +  I  +  +
Sbjct: 388 NRLETATGNLNEYNENITAALSRIEDCDMAAEMTEFTAQNVKTQAATSILAQANQ 442


>gi|196039109|ref|ZP_03106416.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           NVH0597-99]
 gi|196030254|gb|EDX68854.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           NVH0597-99]
          Length = 287

 Score = 39.3 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 50/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +      ++  L  +    +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLMLQALSEQNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSTEKPPFTEDGT 150


>gi|115353110|ref|YP_774949.1| flagellar hook-associated protein FlgL [Burkholderia ambifaria
           AMMD]
 gi|115283098|gb|ABI88615.1| flagellar hook-associated protein 3 [Burkholderia ambifaria AMMD]
          Length = 413

 Score = 39.3 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 45/367 (12%), Positives = 101/367 (27%), Gaps = 57/367 (15%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
                ++       +++   + +     L      L S+  ++  +   +V   +G   +
Sbjct: 45  GAAQAVQLSMTSATLSQYATNQTAALASLQAEDQALQSVSGVLTGVQTLVVRAGDGSLAD 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGY--------------- 151
           +     A  L+   +  +T AN  D  G YLF+G+N+S  P                   
Sbjct: 105 SDRSALATQLQGYRDQLMTLANSNDGAGNYLFAGLNNSSAPFTSSPNGSVSYVGDSGTRQ 164

Query: 152 -FTKDSLAKKSFDQMLQGFLE-----------ENSKSLLAGQHLEVSSMNAQQMTDFIKQ 199
               DS +    D     F+              + +   G    V+       T+  + 
Sbjct: 165 VQIGDSSSVAQGDTGSAVFMSVPSLGSAPVPSAGAANTGTGTITAVTVTTPSAATNGHQF 224

Query: 200 LEDKFSDDEYWANNWSNASDHNIK----------YRIKDTEGIDVSANVNMRGIRDIM-- 247
                          ++ S                 I    G+ V+ +            
Sbjct: 225 SIAFGGTPAAPTYTVTDNSAKPPTTTPAQAYTAGASIALGGGMTVAVSGTPAAGDTFAVT 284

Query: 248 -----------------FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                             ++ + T      +   A +         V   +  +   +A 
Sbjct: 285 PGPQASGGADIFSTLDSMISALKTPVTGNPVAAAALSNALMTGSIKVGNTMRNVTTIQAS 344

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
           +G  E+ +   +   Q  +    + ++        T  +Q   + N +  +     +LQ 
Sbjct: 345 VGGREQEVKAMQAVNQTASLQTTSNLTDLTSTNMTTTISQYLQVQNALTGAQKAYVQLQN 404

Query: 351 LSILNYL 357
           LS+  Y+
Sbjct: 405 LSLFQYI 411


>gi|327542209|gb|EGF28700.1| flagellar hook-associated protein 3 [Rhodopirellula baltica WH47]
          Length = 651

 Score = 39.3 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 40/88 (45%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
             ++ + + + L      R  +G+    + + R  ++N+N ++ + +S ++  +     +
Sbjct: 564 IGRLQARLDEDLDDSTRTRGRVGVWHSALQDSRTAVENENVLLQSQLSDAMDADLAVVIS 623

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           +L      +E S     +   +++LNYL
Sbjct: 624 ELQARQVALEASMRFVGQTSGITVLNYL 651


>gi|218512918|ref|ZP_03509758.1| flagellin C protein [Rhizobium etli 8C-3]
          Length = 145

 Score = 39.3 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+T++  LS +    A LG     I+ +  F+   ++ ID+ + + +  +     +
Sbjct: 54  IQSALTTIESALSAMTSAGAQLGSISTRIDLQEDFVGALSDSIDSGVGRLVDADMEEESS 113

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 114 KLSALQTQQQLA------IQSLSIAN 133


>gi|171322358|ref|ZP_02911182.1| flagellar hook-associated protein 3 [Burkholderia ambifaria MEX-5]
 gi|171092320|gb|EDT37689.1| flagellar hook-associated protein 3 [Burkholderia ambifaria MEX-5]
          Length = 413

 Score = 39.3 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 45/367 (12%), Positives = 100/367 (27%), Gaps = 57/367 (15%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
                ++       +++   + +     L      L S+  ++  +   +V   +G   +
Sbjct: 45  GAAQAVQLSMTSATLSQYATNQTAALASLQAEDQALQSVSGVLTGVQTLVVRAGDGSLAD 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGY--------------- 151
                 A  L+   +  +T AN  D  G YLF+G+N+S  P                   
Sbjct: 105 GDRSALATQLQGYRDQLMTLANSNDGAGNYLFAGLNNSSAPFTSSPNGSVSYVGDSGTRQ 164

Query: 152 -FTKDSLAKKSFDQMLQGFLE-----------ENSKSLLAGQHLEVSSMNAQQMTDFIKQ 199
               DS +    D     F+              + +   G    V+  +    T+    
Sbjct: 165 VQIGDSSSVAQGDTGSAVFMSVASLGSAPVPSAGAANTGTGTITAVTVTSPSAATNGHHF 224

Query: 200 LEDKFSDDEYWANNWSNASDHN----------IKYRIKDTEGIDVSANVNMRGIRDIM-- 247
                          ++ S                 I    G+ V+ +            
Sbjct: 225 SIAFGGTPAAPTYTVTDNSATPPTTTAAQAYTAGASIALGGGMTVAVSGTPAAGDTFAVT 284

Query: 248 -----------------FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                             +A + T      +   A +         +   +  +   +A 
Sbjct: 285 PGPQASGGADVFSTLDSMIAALKTPVTGNPVAAAALSNAMMTGSIKLGNTMRNVTTIQAS 344

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
           +G  E+ +   +   Q  +    + ++        T  +Q   + N +  +     +LQ 
Sbjct: 345 VGGREQEVKAMQTVNQTASLQTTSNLTDLTSTNMTTTISQYLQVQNALTGAQKAYVQLQN 404

Query: 351 LSILNYL 357
           LS+  Y+
Sbjct: 405 LSLFQYI 411


>gi|86360666|ref|YP_472554.1| flagellin C protein [Rhizobium etli CFN 42]
 gi|86284768|gb|ABC93827.1| flagellin C protein [Rhizobium etli CFN 42]
          Length = 302

 Score = 39.3 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+T++  LS +    A LG     I+ +  F+   ++ ID+ + + +  +     +
Sbjct: 211 IQSALTTIESALSAMTSAGAQLGSISTRIDLQEDFVGALSDSIDSGVGRLVDADMEEESS 270

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 271 KLSALQTQQQLA------IQSLSIAN 290



 Score = 36.6 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 74/247 (29%), Gaps = 25/247 (10%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T++         + +N +       + TG   D      A  +       +   ++
Sbjct: 2   TSINTNNSAMAALQTLRSINSNLETTQNSVSTGYRVDTASDNAAYWSIATTMRSDNKALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+   + S   +V ++   LV   E   D +K       L++   S
Sbjct: 62  AVSDALGLGAAKVDTAYTAMDSAIDVVDEIKAKLVAATEDGVDKSKVQEEISQLQEQLMS 121

Query: 124 FVTFAN-------------MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQML---- 166
               A+              +    ++  G  +    +  Y    S        M     
Sbjct: 122 IAQSASFSGENWVAGADGTKSVVSSFVRDGSGAVSVKMTDYVLDTSSTGNVLFGMNGGSI 181

Query: 167 ---QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK 223
               G L     +  +   L++++    Q+   +  +E   S         + A   +I 
Sbjct: 182 ETSSGILGTADANGDSVYSLDITNFTTGQIQSALTTIESALSAMTS-----AGAQLGSIS 236

Query: 224 YRIKDTE 230
            RI   E
Sbjct: 237 TRIDLQE 243


>gi|190895629|ref|YP_001985921.1| flagellin C protein [Rhizobium etli CIAT 652]
 gi|190699574|gb|ACE93658.1| flagellin C protein [Rhizobium etli CIAT 652]
          Length = 302

 Score = 39.3 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+T++  LS +    A LG     I+ +  F+   ++ ID+ + + +  +     +
Sbjct: 211 IQSALTTIESALSAMTSAGAQLGSISTRIDLQEDFVGALSDSIDSGVGRLVDADMEEESS 270

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 271 KLSALQTQQQLA------IQSLSIAN 290



 Score = 36.6 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 74/247 (29%), Gaps = 25/247 (10%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T++         + +N +       + TG   D      A  +       +   ++
Sbjct: 2   TSINTNNSAMAALQTLRSINSNLETTQNSVSTGYRVDTASDNAAYWSIATTMRSDNKALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+   + S   +V ++   LV   E   D +K       L++   S
Sbjct: 62  AVSDALGLGAAKVDTAYTAMDSAIDVVDEIKAKLVAATEDGVDKSKVQEEISQLQEQLMS 121

Query: 124 FVTFAN-------------MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQML---- 166
               A+              +    ++  G  +    +  Y    S        M     
Sbjct: 122 IAQSASFSGENWVAGADGTKSVVSSFVRDGSGAVSVKMTDYVLDTSSTGNVLFGMNGGSI 181

Query: 167 ---QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK 223
               G L     +  +   L++++    Q+   +  +E   S         + A   +I 
Sbjct: 182 ETSTGILGTADANGDSVYSLDITNFTTGQIQSALTTIESALSAMTS-----AGAQLGSIS 236

Query: 224 YRIKDTE 230
            RI   E
Sbjct: 237 TRIDLQE 243


>gi|116255719|ref|YP_771552.1| putative flagellin protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115260367|emb|CAK03471.1| flagellin. Expressed but not required for motility [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|262283897|gb|ACY40758.1| FlaE [Rhizobium leguminosarum bv. viciae]
          Length = 302

 Score = 39.3 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  LST++  LS +    A LG     I  +  F+   ++ ID+ + + +  +     +
Sbjct: 211 IQSALSTIESALSAMTSAGAQLGSISTRIELQEDFVGALSDSIDSGVGRLVDADMEEESS 270

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 271 KLSALQTQQQLA------IQSLSIAN 290


>gi|294497860|ref|YP_003561560.1| flagellin [Bacillus megaterium QM B1551]
 gi|294347797|gb|ADE68126.1| flagellin [Bacillus megaterium QM B1551]
          Length = 242

 Score = 39.3 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 33/102 (32%)

Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIE 286
            +          N     D+ F  +  T    K++       ++   + T+   +  + +
Sbjct: 141 GNAGKFTFQIGANKDQKIDVTFAKMDSTSLGVKDIDLSVDAAISTAAIDTIDTAIKNVSD 200

Query: 287 QRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
           +R+ LG  +  +      L   +  +    S+   V+   A 
Sbjct: 201 ERSQLGAKQNRLEHTINNLSTSSENLTAAESRIRDVDYALAA 242


>gi|323490120|ref|ZP_08095340.1| flagellin [Planococcus donghaensis MPA1U2]
 gi|323396168|gb|EGA88994.1| flagellin [Planococcus donghaensis MPA1U2]
          Length = 431

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 76/270 (28%), Gaps = 8/270 (2%)

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
             ++SN+ +  + S +    + +  + +     ++   +              L     S
Sbjct: 165 TFINSNATLATKASVTLTATAGVNTVDKSDSLTIIANGKTYNVGTTAGQTYDDLAKKITS 224

Query: 124 FVTFANM---TDEGQYLFSG--INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
            V  A     +  G + F     N+ +       T  +L               N+  L 
Sbjct: 225 TVDGATATWDSTAGTFKFESNDANADQSISVAETTLGALDGTKDFTTAATDTGSNASGLD 284

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
           A         N   +T      E    + +   +  S  +   I   I  ++ + +    
Sbjct: 285 AANTTFSYEGNKVTVTGGSAGFEGLTFNLKA--DVGSTTTATVIGSTIDVSDQLTMQIGS 342

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           N      I   A+  +     ++            ++++   +  +  +R+ LG  +  +
Sbjct: 343 NEGQSISININAMDASNLGVADIDVTTHEG-ASSAITSIDAAIKSVSSERSKLGAVQNRL 401

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
                 L      +    S+   V+   A 
Sbjct: 402 EHSINNLNTSAENLTAAESRIRDVDYAEAA 431


>gi|323492331|ref|ZP_08097484.1| flagellar hook-associated protein FlgL [Vibrio brasiliensis LMG
           20546]
 gi|323313378|gb|EGA66489.1| flagellar hook-associated protein FlgL [Vibrio brasiliensis LMG
           20546]
          Length = 298

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 95/306 (31%), Gaps = 58/306 (18%)

Query: 51  SILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKF 110
            +L  ++E + I +   + + V   LS+ + HL S+ + ++ +   ++    G   ++  
Sbjct: 48  QLLNLDREGSAINQYQSNIANVKTALSSQEVHLDSVNESLKSINDLVLWGANGTLTDDDR 107

Query: 111 PINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF 169
                 L     S V+  N  DE G+YLFSG  +            +    +    +   
Sbjct: 108 VGIITELESLRSSIVSSFNAQDEEGRYLFSGTKTD----------TAALSNASGSYVIEG 157

Query: 170 LEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDT 229
             +     +A      ++M A+++ D          DD                      
Sbjct: 158 NNDKRVVTVAKGVSMEANMTAEEILDLGGNNVLNQLDD---------------------- 195

Query: 230 EGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
                                 +  EF +      A     +  L+ ++     ++    
Sbjct: 196 ----------------------LIAEFKAP---TAAFRTTVESSLNAIESTSGNVLSALT 230

Query: 290 VLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQ 349
            LG    N++            +D   S    ++   A  +LS  +  ++ +     K+ 
Sbjct: 231 ELGGRHNNLDLMDSAHGENKLFVDKVTSDLSALDYGEASVRLSNYMAALQATQASYMKIN 290

Query: 350 KLSILN 355
            LS+ N
Sbjct: 291 DLSLFN 296


>gi|160881968|ref|YP_001560936.1| flagellin domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160430634|gb|ABX44197.1| flagellin domain protein [Clostridium phytofermentans ISDg]
          Length = 502

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 45/144 (31%), Gaps = 6/144 (4%)

Query: 216 NASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLS 275
            A   N+   +     +D+    N     ++    V      +  +    +       +S
Sbjct: 358 GAGSDNVSITVLQAGPMDLQIGANEGQTMEVRIPRVDTYTLGTNIVNVCTQEG-ASSAIS 416

Query: 276 TVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLI 335
            + + ++ + + RA LG  +  +      L      I   +S+    +     +  +   
Sbjct: 417 ILSKAITMVTDIRAKLGAYQNRLEHAIANLDVGAENITEALSRIEDTDMAKEMSLFTQKN 476

Query: 336 NKIEMSYMITTKLQK-----LSIL 354
             ++    +  +  +     LS+L
Sbjct: 477 VLVQAGTAMLAQANQRPQNILSLL 500


>gi|91225880|ref|ZP_01260849.1| flagellar hook-associated protein L [Vibrio alginolyticus 12G01]
 gi|269965417|ref|ZP_06179536.1| flagellar hook-associated protein [Vibrio alginolyticus 40B]
 gi|91189530|gb|EAS75806.1| flagellar hook-associated protein L [Vibrio alginolyticus 12G01]
 gi|269829896|gb|EEZ84126.1| flagellar hook-associated protein [Vibrio alginolyticus 40B]
          Length = 397

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 11/168 (6%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQ 57
             T IS+   ++ +    +          E++ +G+     SD  L          + EQ
Sbjct: 1   MLTRISSFHNYQSVQNDLRRQENKVHHNQEQLASGKKLLKPSDDPLAAHYIQNISQQQEQ 60

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
            + +++  +    LV  RL   + ++++ +    +     + ++ G             L
Sbjct: 61  LQQYLSSIV----LVRNRLENHEVNIANAENFADESKRLTMEMINGAFSAEDRQAKKREL 116

Query: 118 RDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
            +   +F+   N  D  G Y+F+G     +P   Y  KD   + + D 
Sbjct: 117 EEIANNFLNLVNSQDESGNYVFAGTKPKSQPF--YRDKDGSVQYAGDD 162


>gi|330809605|ref|YP_004354067.1| methyl-accepting chemotaxis protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377713|gb|AEA69063.1| Putative methyl-accepting chemotaxis protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 598

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 44/127 (34%), Gaps = 3/127 (2%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
           +TT IS S+   +  +     + +S+    E   G+ +D    +     S        + 
Sbjct: 329 QTTQISHSARETQKVVERASGHFESMIGDFESTNGKLADIATHIQQFADSNTGIN---DR 385

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           + +    + L+ +R+  S      +  + + +   L   + G    +     A   RD+ 
Sbjct: 386 VTQIHADSQLIDQRMQHSATATRDLSGVAEKVQALLGRFVLGHGKLDAAITRASQCRDTL 445

Query: 122 ESFVTFA 128
           +  +   
Sbjct: 446 QVRLEAL 452


>gi|291526820|emb|CBK92406.1| Flagellin and related hook-associated proteins [Eubacterium rectale
           M104/1]
          Length = 510

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 57/187 (30%), Gaps = 2/187 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + I                K + +M T +      +        L      +H+ + 
Sbjct: 3   ITNNMIMGNTKTNINSTKVLVDKYNTQMTTQKKISKASEDPVIAIRSLRLSTSLSHLDQY 62

Query: 66  LHSN-SLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             +N    +  +  +Q  LS+M+ ++ D+    V         +        L    E  
Sbjct: 63  KDNNIPDASSWMDVTQTALSNMKSLLTDIRTQCVNGSTDTLTADVRNTILQQLTALSEQV 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
            T  N    G+ +F+G  +S K L       S  + + +       E+   +        
Sbjct: 123 YTEGNADYAGRTVFTGYRTSSK-LTFQKDTKSTYQITQEFSAADLSEKRYYTNGVTVPNS 181

Query: 185 VSSMNAQ 191
           +++    
Sbjct: 182 INAATPD 188


>gi|229058372|ref|ZP_04196756.1| Flagellar hook-associated protein 3 [Bacillus cereus AH603]
 gi|228719881|gb|EEL71471.1| Flagellar hook-associated protein 3 [Bacillus cereus AH603]
          Length = 287

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 49/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQMMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L G     +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLTVQALNGTNSEKELKAIGAEIEQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEQVPFTEDGT 150


>gi|222149358|ref|YP_002550315.1| flagella associated protein [Agrobacterium vitis S4]
 gi|221736342|gb|ACM37305.1| flagella associated protein [Agrobacterium vitis S4]
          Length = 319

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 42/351 (11%), Positives = 100/351 (28%), Gaps = 41/351 (11%)

Query: 5   GISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAE 64
            +S +S       L    +K       ++ TG+  D      A  +     + +   ++ 
Sbjct: 3   SVSINSTSASALSLLSGSSKALEATQTKVATGKKVDDASDNAAYWSIATTMKSDSLSLSS 62

Query: 65  RLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
              + +L      T+   L     +V D+   L+       +          L+D   + 
Sbjct: 63  AEDATALSAAVSDTAALGLEQATGLVSDIQAKLIASKAAGANKGAINDEISQLKDQLSTV 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
                 +  GQ   +                S    S    +      N    +      
Sbjct: 123 AQS--SSFNGQNWLA-----------LDANQSPKVTSMVSSVGSDGSGNLAVNVTNFDTA 169

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
            S + ++                        +ASD  +      T  I    + +   + 
Sbjct: 170 QSVLTSKN-----------------------DASDGILTR---STLTIGSDGSASEYYLM 203

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
           ++              ++D   N     M+   Q  LS I +  A +G ++  I+     
Sbjct: 204 NVGSQTPAAPTAAEIAISDDTSNAQIDAMIGATQSILSSITDASAAVGATQNRISNSSDL 263

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLST--LINKIEMSYMITTKLQKLSI 353
           +++  +     I +    +      +LS   + ++++ + +     Q+ S+
Sbjct: 264 MKDLQDTATVSIGRLTDADMEEEATKLSAQSVQSQLQTASLSIANSQQKSL 314


>gi|162421086|ref|YP_001606479.1| flagellar hook-associated protein 3 [Yersinia pestis Angola]
 gi|162353901|gb|ABX87849.1| flagellar hook-associated protein 3 [Yersinia pestis Angola]
          Length = 248

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 55/145 (37%), Gaps = 1/145 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +STS ++++            ++  +++ TG+            +  +   Q ++  ++ 
Sbjct: 3   LSTSMLYQQNMQGITNAQSLWMQTGQQLSTGKRVVNPSDDPMAASQAVMVSQAESENSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S   +  S     L+     +Q +   ++        ++     A  L+   +  +
Sbjct: 63  TLARSFARQSSSLETTVLAQTTSTIQSIQSLVISAKNDTLSDDDRASYATQLQGLKDQLL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKPLN 149
             AN TD  G+Y+F+G  S + P  
Sbjct: 123 NQANTTDGNGRYIFAGFKSDKPPFA 147


>gi|315641797|ref|ZP_07896801.1| phage infection protein [Enterococcus italicus DSM 15952]
 gi|315482472|gb|EFU73011.1| phage infection protein [Enterococcus italicus DSM 15952]
          Length = 905

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 88/281 (31%), Gaps = 23/281 (8%)

Query: 45  LGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGK 104
           LG++ +   E     + +A      + +   +++    L ++ +   D+      L    
Sbjct: 327 LGSQASGTSE-----SVLAFAKQLQTALPTIITSVDTTLDAISQAAGDVQTTTSDLQTLL 381

Query: 105 TDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
             N         +    E+     N       L + + +  + L       S A  S  Q
Sbjct: 382 DKNELTDAEKQQVVTLLEALAAHFNTQAT---LLNSVITLLENLQ--QATGSTALDSVIQ 436

Query: 165 MLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY 224
            L+    E + S LA +   ++        D IK            A      +  N+K 
Sbjct: 437 QLKTV--EQTVSDLATRATSLAEQAKNGEFDQIKTDISALLTSANQAAGAVQTTITNVKA 494

Query: 225 RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGI 284
            +   + I    N        ++      +  +S+ +       L      TV+  +S +
Sbjct: 495 -LNVGDSITTIVN-------QLIDTLTTASSLMSQ-VNFEQLESLLTATHGTVKNAISIL 545

Query: 285 IEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH 325
            + +A L    + +++    L      I   I+K  G + +
Sbjct: 546 EKYQAQLPAIRQELSDANTLLNGHMTQIVDAINK--GADLY 584


>gi|258614829|ref|ZP_05712599.1| two component LuxR family transcriptional regulator [Enterococcus
           faecium DO]
          Length = 122

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN------KFPINAGMLRDSYESF 124
           L   R+   Q  + + ++I+      +++LL    D           +   +++ + ++ 
Sbjct: 7   LTDIRMPK-QTGIDAAKEILAKFPKAILLLLTTFKDEEYIREAFSIGVKGYLIKQNLQAI 65

Query: 125 VTFANMTDEGQYLFSG--INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKS 176
           +        GQ +F    I +  + +    T DS A  SF +     ++E +  
Sbjct: 66  IPSVKSAYNGQAVFGNEIIETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAG 119


>gi|228964722|ref|ZP_04125829.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794972|gb|EEM42471.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 12  VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 71

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q  L S+ +  Q  V  L      +    +       +    
Sbjct: 72  QKDIADSKNVLTQTENTLQGVLKSLTRADQLTVQAL----SEQNGEKELKAIGAEIDQIL 127

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++   P     T
Sbjct: 128 KQVVYLANTKEQGRYIFGGDSAENPPFTEDGT 159


>gi|228978343|ref|ZP_04138720.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis Bt407]
 gi|228781360|gb|EEM29561.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis Bt407]
          Length = 296

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 12  VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 71

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q  L S+ +  Q  V  L      +    +       +    
Sbjct: 72  QKDIADSKNVLTQTENTLQGVLKSLTRADQLTVQAL----SEQNGEKELKAIGAEIDQIL 127

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++   P     T
Sbjct: 128 KQVVYLANTKEQGRYIFGGDSAENPPFTEDGT 159


>gi|151221557|ref|YP_001332379.1| hypothetical protein NWMN_1345 [Staphylococcus aureus subsp. aureus
            str. Newman]
 gi|205716443|sp|A6QGY5|EBHB_STAAE RecName: Full=Extracellular matrix-binding protein ebhB; AltName:
            Full=ECM-binding protein homolog B; Flags: Precursor
 gi|150374357|dbj|BAF67617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            str. Newman]
          Length = 7031

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
             +++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 IQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
             S    N +                 ++ +                V    +G+      
Sbjct: 6572 ASGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|317052273|ref|YP_004113389.1| chemotaxis sensory transducer [Desulfurispirillum indicum S5]
 gi|316947357|gb|ADU66833.1| chemotaxis sensory transducer [Desulfurispirillum indicum S5]
          Length = 573

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 64/202 (31%), Gaps = 5/202 (2%)

Query: 149 NGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDE 208
             +  + +  K+S D + Q     +      G     +S          + L       E
Sbjct: 313 ATFDAQSNKLKQSADHIEQIGNASSDVLNAMGDAASSTSQTLSMAQQGKENLSAAVLSME 372

Query: 209 YWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNV 268
               N S+ S           +   +   +N    +  +       E      +     V
Sbjct: 373 NIRENASSLSATVANLSGSTDQITTILGTINDIADQTNLLALNAAIEAARAGDSGRGFAV 432

Query: 269 LTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH 328
           +  ++    ++    I E  A+LG  +         ++  ++ + T + +   V++    
Sbjct: 433 VADEVRKLAERTQEAISEISAILGGLQSEAAIANASMKTTSDNVQTGVERFEAVDRF--- 489

Query: 329 AQLSTLINKIEMSYMITTKLQK 350
              ST++ K+E    + T+ Q+
Sbjct: 490 --FSTVLEKLEQIAAVNTQAQR 509


>gi|283470647|emb|CAQ49858.1| EbhA protein [Staphylococcus aureus subsp. aureus ST398]
          Length = 10544

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6333 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6392

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6393 LNNAQKQDLTSQIEGVTTVNGVNGVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6452

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6453 TNKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6509

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A + ++A D  +K  I D + I 
Sbjct: 6510 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNSAMDQ-LKQAIADHDTIV 6568

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    +G+      
Sbjct: 6569 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6627

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6628 LATAKQQAKDALRQMTHLSNAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6687

Query: 343  M 343
             
Sbjct: 6688 A 6688


>gi|228952119|ref|ZP_04114214.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228807651|gb|EEM54175.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 287

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 62

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q  L S+ +  Q  V  L     G     +       +    
Sbjct: 63  QKDIADSKNVLTQTENTLQGVLKSLTRADQLTVQAL----NGTNSEKELQAIGVEIDQIL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++   P     T
Sbjct: 119 KQVVYLANTKEQGRYIFGGDSAKNPPFTEDGT 150


>gi|291526375|emb|CBK91962.1| Flagellin and related hook-associated proteins [Eubacterium rectale
           DSM 17629]
          Length = 510

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 57/187 (30%), Gaps = 2/187 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + I                K + +M T +      +        L      +H+ + 
Sbjct: 3   ITNNMIMGNTKTNINSTKVLVDKYNTQMTTQKKISKASEDPVIAIRSLRLSTSLSHLDQY 62

Query: 66  LHSN-SLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             +N    +  +  +Q  LS+M+ ++ D+    V         +        L    E  
Sbjct: 63  KDNNIPDASSWMDVTQTALSNMKSLLTDIRTQCVNGSTDTLTADVRNTILQQLTALSEQV 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
            T  N    G+ +F+G  +S K L       S  + + +       E+   +        
Sbjct: 123 YTEGNADYAGRTVFTGYRTSSK-LTFQKDTKSTYQITQEFSAADLSEKRYYTNGVTVPNS 181

Query: 185 VSSMNAQ 191
           +++    
Sbjct: 182 INAATPD 188


>gi|172061964|ref|YP_001809616.1| flagellar hook-associated protein FlgL [Burkholderia ambifaria
           MC40-6]
 gi|171994481|gb|ACB65400.1| flagellar hook-associated protein 3 [Burkholderia ambifaria MC40-6]
          Length = 413

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 45/367 (12%), Positives = 101/367 (27%), Gaps = 57/367 (15%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
                ++       +++   + +     L      L S+  ++  +   +V   +G   +
Sbjct: 45  GAAQAVQLSMTSATLSQYATNQTAALASLQAEDQALQSVSGVLTGVQTLVVRAGDGSLAD 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGY--------------- 151
           +     A  L+   +  +T AN  D  G YLF+G+N+S  P                   
Sbjct: 105 SDRSALATQLQGYRDQLMTLANSNDGAGNYLFAGLNNSSAPFTSSPNGSVSYVGDSGTRQ 164

Query: 152 -FTKDSLAKKSFDQMLQGFLE-----------ENSKSLLAGQHLEVSSMNAQQMTDFIKQ 199
               DS +    D     F+              + +   G    V+       T+  + 
Sbjct: 165 VQIGDSSSVAQGDTGSAVFMSVPSLGSAPVPSAGAANTGTGTITAVTVTTPSAATNGHQF 224

Query: 200 LEDKFSDDEYWANNWSNASDHN----------IKYRIKDTEGIDVSANVNMRGIRDIM-- 247
                          ++ S                 I    G+ V+ +            
Sbjct: 225 SIAFGGTPAAPTYTVTDNSAKPPTTTAAQAYTAGASIALGGGMTVAVSGTPAAGDTFAVT 284

Query: 248 -----------------FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                             ++ + T      +   A +         V   +  +   +A 
Sbjct: 285 PGPQASGGADIFSTLDSMISALKTPVTGNPVAAAALSNALMTDSIKVGNTMRNVTTIQAS 344

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
           +G  E+ +   +   Q  +    + ++        T  +Q   + N +  +     +LQ 
Sbjct: 345 VGGREQEVKAMQAVNQTASLQTTSNLTDLTSTNMTTTISQYLQVQNALTGAQKAYVQLQN 404

Query: 351 LSILNYL 357
           LS+  Y+
Sbjct: 405 LSLFQYI 411


>gi|89902484|ref|YP_524955.1| flagellin-like protein [Rhodoferax ferrireducens T118]
 gi|89347221|gb|ABD71424.1| flagellin-like [Rhodoferax ferrireducens T118]
          Length = 410

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 46/401 (11%), Positives = 111/401 (27%), Gaps = 51/401 (12%)

Query: 7   STSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERL 66
           S ++    +  L+         L E + +G+                      + IA   
Sbjct: 10  SANTYDNALRNLSMR-QSALSNLQENLTSGKKVVRASDDPTGAAQAERAMTRISRIATDQ 68

Query: 67  HSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVT 126
            +       ++ ++  L  +   +Q+    +V    G   + +       L+   +   +
Sbjct: 69  RALEAQRNSIAMAEGTLGDVTDALQNFRELVVSAGNGVLTSAERKSITIQLQGLRDQVFS 128

Query: 127 FANMTD-EGQYLFSGINSSEKPL-------NGYFTKDSLAKKSFDQMLQGFL-------- 170
            AN  D  GQ LFS + S+  P          Y       + +  ++   F         
Sbjct: 129 LANRKDSNGQPLFSALGSALAPFVGPNAPPQDYAFNGLPGQSASSEVAIPFALDGDSAFM 188

Query: 171 ----------------EENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA--N 212
                             N K+  A  +   ++  A     F        +    +   +
Sbjct: 189 LQTNRDGVYNVSLGSGTTNLKTGPATLNPPTAATGASYTISFTSVTAAAGNTTASYDIVD 248

Query: 213 NWSNASDHNIKYRIKDTE----------------GIDVSANVNMRGIRDIMFVAVIGTEF 256
           + S A+           +                   V+  V +     +  V       
Sbjct: 249 SGSGAAVATGTKTYSTGQSFTVTEMPGLSLTITGTPTVADTVKVESSPSLFSVLDDAISS 308

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
           +    ++   +    + L  +  G+  +   R   G      +      + ++  ++   
Sbjct: 309 IGSASSNATASQAVSQALGNIDIGMGRVSAVRGQAGDLLNRADRITSNQEARSIQLEADR 368

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
           S++  ++     A         + +     ++QKLS+ NY+
Sbjct: 369 SRAEDLDMVKGIADFQNQQTGYQAALQSYAQVQKLSLFNYI 409


>gi|218662515|ref|ZP_03518445.1| flagellin C protein [Rhizobium etli IE4771]
          Length = 332

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 93/315 (29%), Gaps = 27/315 (8%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            +++N++       + TG             +       +   I+    +  +    + T
Sbjct: 16  LRDINRNMTVTQNHITTGMRVAKAADNAVYWSIATTARTDNKAISAVQDALGMAAATMGT 75

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +   + ++  +V ++   LV   E   D  K       L++   S    A    +   + 
Sbjct: 76  AYTGVQNVVDVVSEIKAKLVAATEDGVDKAKINEELKQLQEQLRSVSESATFNSDNWVV- 134

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
             +N+   P        S  + +   +  G L  +  +   G         + +   ++ 
Sbjct: 135 --LNNDATPTQPRQIPASFIRNADGTVSVGMLSYHIDNTPVG-------ATSSKDARYLI 185

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
                 S +          +  +    +  ++   +  + N                 + 
Sbjct: 186 DDRATGSGEYG------VLTSAHFASELGTSQNYVLMTSKNGT-----------TAGQVV 228

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            +L+         +M+S V   L+ +    +  G  EK I  +  F    ++ I   I +
Sbjct: 229 ISLSATTTQGQIGEMISVVDAALTQLTTVGSAFGALEKRIELQNDFAAKLHDNITAGIGR 288

Query: 319 SIGVEQHTAHAQLST 333
            +  +     ++L  
Sbjct: 289 LVDADMEEEASKLKA 303


>gi|258426771|ref|ZP_05687991.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus A9299]
 gi|257849932|gb|EEV73890.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus A9299]
          Length = 9810

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 6572 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|323700467|ref|ZP_08112379.1| flagellar hook-associated protein 3 [Desulfovibrio sp. ND132]
 gi|323460399|gb|EGB16264.1| flagellar hook-associated protein 3 [Desulfovibrio desulfuricans
           ND132]
          Length = 397

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 46/139 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+ I+            D  KL     + +  +      A +  I+E     N +   
Sbjct: 3   ISTAQIYSLSLNQMNSALNDVTKLTIMNASQKQVNSPSDDPAGMGRIVELSGYGNSLTGY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           + +  +    L T+   L +  + +   +            + +  + A  ++   ++  
Sbjct: 63  IDNCGVALDYLGTADDVLGTASETITAALELAEQASTETYTDEELDMMALEMQGYLDALY 122

Query: 126 TFANMTDEGQYLFSGINSS 144
             AN       +F+G ++ 
Sbjct: 123 AIANTQVGSDSIFAGDDTG 141


>gi|218534722|ref|YP_002424483.1| flagellin domain-containing protein [Methylobacterium
           chloromethanicum CM4]
 gi|218525871|gb|ACK86454.1| flagellin domain-containing protein [Methylobacterium
           chloromethanicum CM4]
          Length = 439

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
           +++   +   K  + TV + ++ I E    LG ++  I+ ++ F+       D  I   +
Sbjct: 340 ISNSTTDAALKAHIDTVDRAIAKITEAATTLGAAKTQIDGQKTFVDTLMKSNDRAIGILV 399

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
             +      +L  L  + +++      +Q LSI N
Sbjct: 400 DADIEEESTKLKALQTQQQLA------IQTLSIAN 428


>gi|327193046|gb|EGE59958.1| flagellin C protein [Rhizobium etli CNPAF512]
          Length = 302

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+ V+  L  +    A LG   K I+ +  F+   ++ ID+ I + +  +     +
Sbjct: 211 IQSALTNVEAALKSMTSAGAALGSLSKRIDNQEDFVSALSDSIDSGIGRLVDADMEEESS 270

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 271 KLSALQTQQQLA------IQSLSIAN 290


>gi|293605010|ref|ZP_06687406.1| flagellar hook-associated protein 3 [Achromobacter piechaudii ATCC
           43553]
 gi|292816615|gb|EFF75700.1| flagellar hook-associated protein 3 [Achromobacter piechaudii ATCC
           43553]
          Length = 420

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 1/143 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST+ ++            D  +L E++ +G+            +  +   Q K+  +  
Sbjct: 3   LSTTMMYSNGLSGVLSQESDMNRLVEQVGSGRKFLTPADDPLSASLSIGVAQTKSMNSTY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       L      L S+   +QD+   ++    G   ++     +  L+ + ++ +
Sbjct: 63  GLNRDTAMTNLGQESNVLDSITTALQDVRTRVIQAGNGTFADSDRQALSTALKSARDALL 122

Query: 126 TFANMTD-EGQYLFSGINSSEKP 147
             AN TD  GQYLFSG      P
Sbjct: 123 GLANSTDGNGQYLFSGYQGGVVP 145


>gi|156050327|ref|XP_001591125.1| hypothetical protein SS1G_07750 [Sclerotinia sclerotiorum 1980]
 gi|154692151|gb|EDN91889.1| hypothetical protein SS1G_07750 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 976

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 11/129 (8%)

Query: 189 NAQQMTDFIKQLEDK-------FSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
              +M  FIK  ED         + +E +A+    A    +     ++   DV  +V   
Sbjct: 77  TIAKMPKFIKSEEDLKRGLLNCLTSNEGFASFVFPALFQKLDS---ESVRADVKIDVFD- 132

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
            + + +      +EF +         V   +    + + +  I    + LG    NI ++
Sbjct: 133 AMLECIRNYTNVSEFSTTIWDTLKWEVWNGENEDFINRSIENIAAVASQLGRQSSNIKDD 192

Query: 302 RVFLQNKNN 310
              L    N
Sbjct: 193 NDKLAKYIN 201


>gi|258449718|ref|ZP_05697819.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus A6224]
 gi|257856966|gb|EEV79866.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus A6224]
          Length = 9810

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 6572 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|86356322|ref|YP_468214.1| flagellin C protein [Rhizobium etli CFN 42]
 gi|86280424|gb|ABC89487.1| flagellin C protein [Rhizobium etli CFN 42]
          Length = 303

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
               L++++ GL  + +  + LG     I  +  F+   ++ ID+ + + +  +     +
Sbjct: 212 ISMALTSIEAGLEAMTKAASQLGSISTRIELQENFVGALSDSIDSGVGRLVDADMEEESS 271

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +L+ L  + +++      +Q LSI N
Sbjct: 272 KLTALQTQQQLA------IQSLSIAN 291


>gi|228920450|ref|ZP_04083795.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839080|gb|EEM84376.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 296

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 12  VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 71

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q  L S+ +  Q  V  L      +    +       +    
Sbjct: 72  QKDIADSKNVLTQTENTLQGVLKSLTRADQLTVQAL----SEQNGEKELKAIGAEIDQIL 127

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++ + P     T
Sbjct: 128 KQVVYLANTKEQGRYIFGGDSAEKPPFTEDGT 159


>gi|94313610|ref|YP_586819.1| hypothetical protein Rmet_4688 [Cupriavidus metallidurans CH34]
 gi|93357462|gb|ABF11550.1| hypothetical protein Rmet_4688 [Cupriavidus metallidurans CH34]
          Length = 1385

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 14/230 (6%)

Query: 35   TGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMV 94
            TG ++  G+       + L+ +Q   +    +        RL   QA L+++   +  +V
Sbjct: 825  TGSAATGGVSAIGSTVADLK-QQAATYAPGLVAD---AQARLDALQAALTALSNAIAPLV 880

Query: 95   GPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTK 154
                  ++              ++ + +     A  T  G  L +G+  S          
Sbjct: 881  NT---SIDAAPALPNLATAITAVQSASDQLRATAGATVAGVSLPAGLRQSLI-----QAA 932

Query: 155  DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNW 214
            +     + D      L    K+L A     +     +     +   +  F+  +   N  
Sbjct: 933  NVATALAGDLGTVAALVAEGKALFAALDAILGD--PKAFQALLSDADALFAHLKAVQNAL 990

Query: 215  SNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDG 264
            +   D    +R+ +        NV    +  +     +    L     D 
Sbjct: 991  APLRDTLANFRLLEGAARQTLLNVLDAMMLALAVSDDVLRTLLQVLFGDE 1040


>gi|332092869|gb|EGI97937.1| flagellar hook-associated protein 3 [Shigella dysenteriae 155-74]
          Length = 197

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 67/235 (28%), Gaps = 48/235 (20%)

Query: 124 FVTFANMTD-EGQYLFSGINSSEKPLN----GYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
            +  AN TD  G+Y+F+G  +   P +     Y       K+  D      +        
Sbjct: 1   MLNLANTTDGNGRYIFAGYKTETAPFSEANGDYVGGTESIKQQVDASRSMVIGH------ 54

Query: 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANV 238
                        ++ D I                    S+   +     +E        
Sbjct: 55  ----------TGDKIFDSIT-------------------SNAVAEPDGSASET------- 78

Query: 239 NMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
           N+  + D    A + T                 K    ++  L+ ++  RA LG     +
Sbjct: 79  NLFAMLDSAIAA-LKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNEL 137

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
                   ++       +S  + V+ +   +        ++ SY   T +Q LS+
Sbjct: 138 ESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 192


>gi|50954395|ref|YP_061683.1| flagellar hook-associated protein 3 [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50950877|gb|AAT88578.1| flagellar hook-associated protein 3 [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 290

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 97/358 (27%), Gaps = 70/358 (19%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M     ST+ +      L          L++E   G          A V ++L   ++ +
Sbjct: 1   MTMRVTSTAQLLTTQRNLQA-AKASMNDLYQEGTRGVKIAKPSDDPAGVANLLTVRKQLS 59

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLV-ILLEGKTDNNKFPINAGMLRD 119
             A+   +       + T  + L+    ++  +   +V     G +           +  
Sbjct: 60  QNAQHTSNVDDGIGWMKTVDSALTGSADVISKIRDLVVQAANTGTSSPANQDSIVKSIEQ 119

Query: 120 SYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
             ++ +  AN    G+ +F+G               S A  +FD     F          
Sbjct: 120 LKQNLLALANTQYLGRSVFAGT--------------SDADTAFDVKSYAFNGTPGAE--- 162

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
                                                     +  R+  +  I VSA   
Sbjct: 163 ------------------------------------------VSRRVSPSATIPVSA--- 177

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
             G       +      +    T  A +      L+ +   L+ I   +A +G +   + 
Sbjct: 178 -DGAAVFGTGSGSVFSLIDGIATKIAADRNVGSELAAIDSALNTISGAQAAIGTNFAQLQ 236

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                       ++   S+    +      +L+      + +  +  K  + ++++YL
Sbjct: 237 LGTDA-----TTLEEARSRIEDADPADVVLRLNAQQVSYQTALAVAAKSIQKTLMDYL 289


>gi|229132552|ref|ZP_04261401.1| Flagellar hook-associated protein 3 [Bacillus cereus BDRD-ST196]
 gi|228650898|gb|EEL06884.1| Flagellar hook-associated protein 3 [Bacillus cereus BDRD-ST196]
          Length = 287

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 50/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ + +  +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQMMDLNVQQQYHRNQVTSGKKNLFMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L G     +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLTVQALNGTNSEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEQAPFTEDGT 150


>gi|302333046|gb|ADL23239.1| extracellular matrix binding protein [Staphylococcus aureus subsp.
            aureus JKD6159]
          Length = 10548

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6337 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6396

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6397 LNNAQKQDLTSQIESATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6456

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + +Y++ +T A           G N  ++ +       +  + +   D  LQ    + 
Sbjct: 6457 TKKTAYDNAITQAESYLNKD---RGANKDKQAVEQAIQSVTTTENALNGDANLQRAKSDA 6513

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6514 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQSIADHDTIV 6572

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    +G+      
Sbjct: 6573 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6631

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6632 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6691

Query: 343  M 343
             
Sbjct: 6692 A 6692


>gi|90418381|ref|ZP_01226293.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90338053|gb|EAS51704.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 297

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 103/352 (29%), Gaps = 67/352 (19%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I+T++           +N    +    + TG          A  +       +   + 
Sbjct: 2   TSINTNTSAMTALQSLSAINNSLDETQNRISTGYRVGAASDNAAYWSIATTMRSDNKALG 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+   +++   +V ++   LV   E   D  K       L+    S
Sbjct: 62  AVEDALGLGQAKVDTAYTGMTAAIDVVDEIKTKLVAAREPGVDKTKIQSEIKELQGQLTS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             + A+        FSG N        + +  +        ++  F      ++  G   
Sbjct: 122 IASSAS--------FSGEN--------WLSIGTGIAAGTKNVVASFNRAADGTVSVGTI- 164

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
                        +   + K  D +                              N  GI
Sbjct: 165 ------------GVDTTKTKLFDTD------------------------------NTNGI 182

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
            D           L+  LT    +     M+S V + +  +    + LG ++  ++ +  
Sbjct: 183 LDGARTGTTVVSTLA--LTGATTDAAISTMISDVDEAIGLMTTAASNLGAAKSRMDIQSE 240

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+ N  + I+  +   +  +      +L  L  + ++       +Q LSI N
Sbjct: 241 FVSNLRDSIEKGVGTLVDADMTEESTRLKALQTQQQLG------VQALSIAN 286


>gi|228938853|ref|ZP_04101453.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971734|ref|ZP_04132355.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228787824|gb|EEM35782.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820702|gb|EEM66727.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939353|gb|AEA15249.1| flagellar hook-associated protein FlgL [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 287

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 62

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q  L S+ +  Q  V  L      +    +       +    
Sbjct: 63  QKDIADSKNVLTQTENTLQGVLKSLTRADQLTVQAL----SEQNGEKELKAIGAEIDQIL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++   P     T
Sbjct: 119 KQVVYLANTKEQGRYIFGGDSAENPPFTEDGT 150


>gi|226320909|ref|ZP_03796460.1| flagellar hook-associated protein FlgL [Borrelia burgdorferi 29805]
 gi|226233681|gb|EEH32411.1| flagellar hook-associated protein FlgL [Borrelia burgdorferi 29805]
          Length = 234

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 42/99 (42%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L +    ++  + L+ + + L  ++   A LG  E  ++     +  +   +   + +
Sbjct: 135 DTLYNNKEELVGSRSLAEIDESLKRLLISVADLGAKENRLDRSYERISKEAADMKEDMIQ 194

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
              ++   A   L+      ++S  I+ K+ + ++L+++
Sbjct: 195 YTDLDVTKAITNLNMASLAYQVSIGISAKIMQTTLLDFI 233


>gi|118362326|ref|XP_001014390.1| hypothetical protein TTHERM_00522120 [Tetrahymena thermophila]
 gi|89296157|gb|EAR94145.1| hypothetical protein TTHERM_00522120 [Tetrahymena thermophila SB210]
          Length = 4049

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 37/115 (32%)

Query: 41   YGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVIL 100
             G  LG       +  +  +    +L  N    + L  +   +SS+Q+     +   +  
Sbjct: 1734 VGGTLGKLNQQSPDISRLLSSQQGQLDVNKSYGQHLHVTDQGISSLQQSFNQQIQNNIQS 1793

Query: 101  LEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKD 155
              G  D +    N+  + ++        N++   +      N  + P+   +   
Sbjct: 1794 NYGAQDKSTMINNSQNIANALIGNTKGMNVSQNLKQQIGIQNRDQFPVKTIYFPS 1848


>gi|285817114|gb|ADC37601.1| Putative Staphylococcal surface anchored protein; adhesin emb
            [Staphylococcus aureus 04-02981]
          Length = 9582

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 6572 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|229591864|ref|YP_002873983.1| flagellar hook-associated protein FlgL [Pseudomonas fluorescens
           SBW25]
 gi|229363730|emb|CAY51131.1| putative flagellar hook-associated protein 3 [Pseudomonas
           fluorescens SBW25]
          Length = 540

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 2/143 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST   F+      +      V+  E+  +G               +L  +Q+K+ +A+ 
Sbjct: 3   ISTQQYFDTSAAKYQNNYSGVVQAQEQASSGVRVQTAGDDPVAAQRLLMLQQQKDMLAQF 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + S +   L+  ++ L+++   +Q     L +   G T +      +  +    +  +
Sbjct: 63  SGNISNIQSSLTNEESVLTAISATIQAA-SQLALKAGGVTSDADRKSISVEVGALEDQLL 121

Query: 126 TFANMTDE-GQYLFSGINSSEKP 147
              N  D  G YLFSG  +   P
Sbjct: 122 GLLNSKDAAGNYLFSGSKTETPP 144



 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 31/86 (36%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
               +S +      +   R  +G  +  +  +    ++      T +S    ++   A  
Sbjct: 453 LNSAVSNLTSSSDQVDNVRGSIGARQNALTVQSSENESVGLANKTTMSALANIDMGEAAI 512

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
            L+     +E S +   K+ +LS+ N
Sbjct: 513 NLTLQQTMLEASQLAFVKISQLSLFN 538


>gi|332311248|gb|EGJ24343.1| Peptidoglycan binding protein [Listeria monocytogenes str. Scott A]
          Length = 2033

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 82/294 (27%), Gaps = 37/294 (12%)

Query: 50   TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIV----QDMVGPLVILLEGKT 105
               L   +       +   NS    RL + Q   + +  I     Q  V PL   +   +
Sbjct: 1352 AQALTLAKTAAFEEVKDGVNSSAEDRLDSVQVSQTQLDAIKNGSNQGSVYPLTYSITKDS 1411

Query: 106  DNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQM 165
                  I   + +D     +T  N  D   Y+              F   +  + + D  
Sbjct: 1412 KTVSVTIQVTVAKD-----LTAVNAHDSTIYI-----GDAWEEKDNFDSATNKEGATDIA 1461

Query: 166  LQGFLEENSKSLLAGQHLEVS----------SMNAQQMTDFIKQLEDKFSDDEYWA--NN 213
                    S +        V+          ++  + +   +   +      + W   +N
Sbjct: 1462 FSDVTVTGSVNTAVAGVYPVTYTYNGVSKKINVTVKAIKTAVNAHDSTIYTGDTWNARDN 1521

Query: 214  WSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKM 273
            + +A D +          +  S N N  G   I +     ++ ++  + +    +     
Sbjct: 1522 FDSALDKDGNSVAFADVTVTGSVNTNETGTNTITYSYDGVSQTITVTVVENKEGISAHDS 1581

Query: 274  LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
                 +  +           ++ N +       N  ++ D  +++   V+   A
Sbjct: 1582 TIYAGESWN-----------AKDNFDSAFDKDGNAVDLEDVTVTEKPTVDTTKA 1624


>gi|167565018|ref|ZP_02357934.1| hypothetical protein BoklE_20880 [Burkholderia oklahomensis EO147]
          Length = 693

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 82/262 (31%), Gaps = 28/262 (10%)

Query: 97  LVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQ-YLFSGINSSEKPLNGYFTKD 155
           L+I                 + +  E+     +   E Q  L +G+ +     +    ++
Sbjct: 98  LLIQERSGGMAGAVGTVISSMVNEIETISGALDSLAEVQGVLQAGLGTLNGLSDRLTVQE 157

Query: 156 SLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWS 215
           + AK   DQ+ Q      +   L  Q ++   ++        +                 
Sbjct: 158 NGAKALQDQINQEIENRKAAGALLAQRMDSLDIDVGNQKAMFQSQIQLL----------- 206

Query: 216 NASDHNIKYRIKDTEGIDVSANVN----MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTK 271
            +SD  +  ++        S +        G  D      +    LS  +T   ++    
Sbjct: 207 QSSDEIMASQV-------TSLSARLSDVEAGQGDGEDSDEVAASLLSAAITSVKKDHALA 259

Query: 272 KMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQL 331
           + ++T+   ++G    +A L + +    +    L  +   +   I  ++       H ++
Sbjct: 260 QQITTLSADING--NIKAQLQVEQTARVDADKALAEQITSLQAQIGDNLSQVIQEMHTEI 317

Query: 332 STLI---NKIEMSYMITTKLQK 350
                   K++  Y +  ++Q+
Sbjct: 318 DATNGKVTKLQAQYTLKAQVQR 339


>gi|302335859|ref|YP_003801066.1| YhgE/Pip C-terminal domain protein [Olsenella uli DSM 7084]
 gi|301319699|gb|ADK68186.1| YhgE/Pip C-terminal domain protein [Olsenella uli DSM 7084]
          Length = 897

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 78/273 (28%), Gaps = 23/273 (8%)

Query: 34  VTGQSSDYGLQLGARVTSILEWEQEKNHIAERL-HSNSLVTKRLSTSQAHLSSMQKIVQ- 91
            TG   D    L   +  + + +   + +   L  ++  V +  ++  +   ++  + Q 
Sbjct: 181 ATGVLGDADSSLDGALGDVRDVQTSLDRLCSLLDDADKTVAEARTSVASARQTLSDLSQS 240

Query: 92  ------DMVGPLVILLEGKTDNNKFPI----NAGMLRDSYESFVTFANMTDEGQYLFSGI 141
                  +   L  L + ++D N               +     + AN         +G 
Sbjct: 241 SGKVAGSLRDALDGLGQTRSDANALATRLSGALASGSGTLSGLSSQANYDIGKA---AGT 297

Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201
               +         S A  +  Q +Q  + +    L+      VS      +   I+ + 
Sbjct: 298 IGFAQGKVDSSIASSRAALAEAQQVQQQISDVRHELVDNVLPFVSD---PALAARIQDVA 354

Query: 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNL 261
               D +   +     SD     R+   +G+          I  +        +  +  L
Sbjct: 355 AALDDVDGLLSKLR--SDQG--SRLDRAQGVSDGIKAGSSAIEGLSGSVDGAIQDGAATL 410

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGIS 294
           +  A++ L    L  +   L         L  S
Sbjct: 411 SS-AQSTLLTTTLPQMSGALDDFAGAGERLASS 442


>gi|227820866|ref|YP_002824836.1| putative flagellin B [Sinorhizobium fredii NGR234]
 gi|227339865|gb|ACP24083.1| putative flagellin B [Sinorhizobium fredii NGR234]
          Length = 306

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 233 DVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVL-TKKMLSTVQQGLSGIIEQRAVL 291
           D            +         +   +L   A        +LS V   LS +    A L
Sbjct: 178 DDGTGALDTATGILGTAGASAGGYDVYSLDISALATADMNDVLSDVDDALSAMTSAAAEL 237

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351
           G     I  +  F+   ++ ID+ + + +  + +    +L  L  + +++      +Q L
Sbjct: 238 GSISMRIGLQEDFVAKLSDSIDSGVGRLVDADMNEESTRLKALQTQQQLA------VQSL 291

Query: 352 SILN 355
           SI N
Sbjct: 292 SIAN 295


>gi|295407184|ref|ZP_06816984.1| extracellular matrix-binding protein ebh [Staphylococcus aureus
            A8819]
 gi|294967897|gb|EFG43926.1| extracellular matrix-binding protein ebh [Staphylococcus aureus
            A8819]
          Length = 8911

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 6572 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|262283901|gb|ACY40760.1| FlaG [Rhizobium leguminosarum bv. viciae]
          Length = 311

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 112/352 (31%), Gaps = 54/352 (15%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + +N         + +G   D      A  +       +   ++
Sbjct: 2   TSILTNNAAMAALQTLRGVNDSLKDTQGRVSSGYRVDKAADNAAYWSIATTMRSDNMALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+ + + S   +V D+   +V   E   D  K       L++   S
Sbjct: 62  AVSDALGLGAAKVDTAYSAMDSALDVVSDIKAKIVAATEKGVDKTKIQQELDQLQEQLLS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N        +    S  K      +                 
Sbjct: 122 IAQSAS--------FSGEN--------WVAGASGTKSVVSSFV----------------R 149

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           + S+  + +MTD++                  + S  N+ + +  T  I+ S+ +     
Sbjct: 150 DGSNAVSVKMTDYVLD----------------SGSLGNVLFGMTSTGAIETSSGIIGTAF 193

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                  VI    +      G         L+ V+  L  +    + LG     I  +  
Sbjct: 194 NGTYGSTVIVMASIYDLDITGFTQGQLDAALTGVELVLGAMTAAGSALGSISTRIQLQET 253

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+   ++ ID+ + + +  +     ++LS L  + +++      +Q LSI N
Sbjct: 254 FVSGLHDSIDSGVGRLVDADMEEESSKLSALQTQQQLA------IQSLSIAN 299


>gi|257795509|ref|ZP_05644488.1| surface anchored protein [Staphylococcus aureus A9781]
 gi|257789481|gb|EEV27821.1| surface anchored protein [Staphylococcus aureus A9781]
          Length = 8695

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 6572 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|306823822|ref|ZP_07457196.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309802424|ref|ZP_07696531.1| YhgE/Pip C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304552820|gb|EFM40733.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221024|gb|EFO77329.1| YhgE/Pip C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 880

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 91/285 (31%), Gaps = 45/285 (15%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTD--------NNKFPINAGMLRDSYESFVTF 127
           +  ++A L+ +Q         L       TD        ++    +            T 
Sbjct: 227 IQAARAALNDVQTAATSAGKGLSGTANLITDTQTRINTFSSTASASLDQGSALLSQLSTQ 286

Query: 128 ANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSS 187
            N +         + S     NGY    S         +Q    +N+K L + Q +++S+
Sbjct: 287 TNTSVNT------VTSGLAAANGY--AGSAIGT-----MQKVNSDNAKVLDSLQKIDISN 333

Query: 188 MNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM 247
           ++ +    + + + D  S +   AN  ++ +  N   +        +S   N        
Sbjct: 334 VSPELNKQYQQIISDLQSRNRQSANTLNDLNQLNTDTKNTVAGTTKLSNQFN-------- 385

Query: 248 FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN 307
                 +   + N    ARN +    L  +  GLS +      L  +   +  +    Q 
Sbjct: 386 -----TSTQSTLNSATDARNAINSSALPQLNSGLSSLATTAGTLSGT---VTSQNFLTQQ 437

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLS 352
            ++++D        V      + L     +++    I  KL +LS
Sbjct: 438 TSSVLDQ----LERV-SADTRSMLKDTDEQLQT---IENKLSQLS 474


>gi|170734366|ref|YP_001766313.1| flagellar hook-associated protein FlgL [Burkholderia cenocepacia
           MC0-3]
 gi|169817608|gb|ACA92191.1| flagellar hook-associated protein 3 [Burkholderia cenocepacia
           MC0-3]
          Length = 411

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 68/185 (36%), Gaps = 3/185 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  ++       +      +L++++ +G S              ++       +++ 
Sbjct: 3   ISTAQFYQMNVAQMSDQQAQLSQLYQQISSGVSLATPADNPLGAAQAVQLSMTSATLSQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             + +     L      L S+  ++  +   ++   +G   ++     +  L+   +  +
Sbjct: 63  ASNQNAALSSLQKEDQTLISVNNLLNSIHTVVIQAGDGSLSDSDRSALSTQLQGYRDQLL 122

Query: 126 TFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           T AN TD  G YLF+G  S+  P +           S D   +     +++S+  G +  
Sbjct: 123 TLANSTDGSGNYLFAGFQSATAPFSN--APGGGVAYSGDTGSRQVQIADTRSIAQGDNGA 180

Query: 185 VSSMN 189
              ++
Sbjct: 181 NVFLS 185


>gi|326383634|ref|ZP_08205320.1| hypothetical protein SCNU_11885 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197718|gb|EGD54906.1| hypothetical protein SCNU_11885 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 669

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 77/267 (28%), Gaps = 21/267 (7%)

Query: 71  LVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINA-GMLRDSYESFVTFAN 129
            V + L         ++K           L       ++    +  +  +   +    A 
Sbjct: 167 AVDQVLVGLTTAGDGIKKAADGSAQLADGLHTANDGAHELASGSHELATNMVTARDGSAQ 226

Query: 130 MTDEGQYLFSGINSSEKPLNGY--FTKDSLAKKSFDQMLQGFLEENSKSLL-----AGQH 182
           + D    L SGIN++  PL       + S  K S        L  +   +L     AG  
Sbjct: 227 LADGTAQLASGINAATAPLTSLLNSVQSSGIKPSQYAGDAARLSSDLSGVLNVIGAAGAG 286

Query: 183 LEVSSMNAQQMTDFIKQLEDK----FSDDEYWANNW--SNASDHNIKYRIKD----TEGI 232
              +     Q+   ++   D      +       N+  +   D +   R+ D    +E +
Sbjct: 287 QSQAEKTVSQVIAGLRSSPDPNMRALAGALAPVQNFLRTQGVDPSTTARVNDLAKQSETL 346

Query: 233 DVSANVNMRGIRD-IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVL 291
                     +R  +  +   G +     L DGA  + T      +  GL  + +    L
Sbjct: 347 SAQLGDKNSPLRSTLTMLESGGLQDKVTQLRDGAGQLETGAA--ALHSGLIQLTDGSEQL 404

Query: 292 GISEKNINEERVFLQNKNNIIDTYISK 318
                 + +    L    + +   +  
Sbjct: 405 ATGAGQLADGTTQLSAGADELAAGLDD 431


>gi|291544314|emb|CBL17423.1| chromosome segregation protein SMC, common bacterial type
           [Ruminococcus sp. 18P13]
          Length = 1188

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 70/221 (31%), Gaps = 22/221 (9%)

Query: 152 FTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQM--TDFIKQLEDKFSDDEY 209
           F   +    + D   +G        +   + ++ +++ A++      I  L+ +  +   
Sbjct: 601 FVALAAELAACDAKYEGIFRSLLGRIAIAEDIDCATVIAKRFGYKFRIVTLDGQVINAGG 660

Query: 210 WANNWSNASDHNIKYRIKDTEGIDV---SANVNMRGIRDIMFVAVIGTEFLS-------K 259
                S A    +  R  + + +     +      G R         T+ L         
Sbjct: 661 SFTGGSAAHSSGVITRKNELDTLGTEIEALTAEQEGQRAAGERLKAETDKLRFDLDSTRD 720

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
            L+     V+      T +Q L+    Q+A     ++ + + +  L  +  ++       
Sbjct: 721 ALSQAQTEVIRLTADRTAKQALAESARQQAAT--QQERVEQAKQSLARQEQLLAEATRAL 778

Query: 320 IGVEQHTAHAQLSTLINK-------IEMSYMITTKLQKLSI 353
             V+Q  A  +   L  +        +    ++ +L KL +
Sbjct: 779 EQVDQSIARQE-QALSAQQDLRSGLQQAREALSAQLAKLKL 818


>gi|325291932|ref|YP_004277796.1| Flagellin A protein [Agrobacterium sp. H13-3]
 gi|10281322|gb|AAG14364.1| flagellin A [Rhizobium lupini]
 gi|325059785|gb|ADY63476.1| Flagellin A protein [Agrobacterium sp. H13-3]
          Length = 410

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
           L+ V++ L+ +    A LG  ++ I+ +  F     + +   I + +  + +    +L  
Sbjct: 324 LTGVEKALTSLTSAGAELGSIKQRIDLQVDFASKLGDALAKGIGRLVDADMNEESTKLKA 383

Query: 334 LINKIEMSYMITTKLQKLSILN 355
           L  + +++      +Q LSI N
Sbjct: 384 LQTQQQLA------IQSLSIAN 399


>gi|320140394|gb|EFW32250.1| signal peptide, YSIRK family [Staphylococcus aureus subsp. aureus
            MRSA131]
          Length = 9758

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
             +++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 IQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
             S    N +                 ++ +                V    +G+      
Sbjct: 6572 ASGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|254931223|ref|ZP_05264582.1| cell wall surface anchor family protein [Listeria monocytogenes
            HPB2262]
 gi|293582771|gb|EFF94803.1| cell wall surface anchor family protein [Listeria monocytogenes
            HPB2262]
          Length = 2027

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 82/294 (27%), Gaps = 37/294 (12%)

Query: 50   TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIV----QDMVGPLVILLEGKT 105
               L   +       +   NS    RL + Q   + +  I     Q  V PL   +   +
Sbjct: 1346 AQALTLAKTAAFEEVKDGVNSSAEDRLDSVQVSQTQLDAIKNGSNQGSVYPLTYSITKDS 1405

Query: 106  DNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQM 165
                  I   + +D     +T  N  D   Y+              F   +  + + D  
Sbjct: 1406 KTVSVTIQVTVAKD-----LTAVNAHDSTIYI-----GDAWEEKDNFDSATNKEGATDIA 1455

Query: 166  LQGFLEENSKSLLAGQHLEVS----------SMNAQQMTDFIKQLEDKFSDDEYWA--NN 213
                    S +        V+          ++  + +   +   +      + W   +N
Sbjct: 1456 FSDVTVTGSVNTAVAGVYPVTYTYNGVSKKINVTVKAIKTAVNAHDSTIYTGDTWNARDN 1515

Query: 214  WSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKM 273
            + +A D +          +  S N N  G   I +     ++ ++  + +    +     
Sbjct: 1516 FDSALDKDGNSVAFADVTVTGSVNTNETGTNTITYSYDGVSQTITVTVVENKEGISAHDS 1575

Query: 274  LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
                 +  +           ++ N +       N  ++ D  +++   V+   A
Sbjct: 1576 TIYAGESWN-----------AKDNFDSAFDKDGNAVDLEDVTVTEKPTVDTTKA 1618


>gi|110667432|ref|YP_657243.1| ABC-type phosphate transport system, substrate binding protein
           [Haloquadratum walsbyi DSM 16790]
 gi|109625179|emb|CAJ51599.1| ABC-type phosphate transport system, substrate binding protein
           [Haloquadratum walsbyi DSM 16790]
          Length = 390

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 11/127 (8%)

Query: 158 AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNA 217
           +K+ FD  +     E  + +  G+    S +       F+    +    D  +  N   A
Sbjct: 198 SKEIFDAGVTQITGEQVRGIYQGEITNWSEIGGPDQEIFVIGRAEGSGTDTSFRLNMLGA 257

Query: 218 SDHNIK---YRIKDTEGIDVSANVNMRGIRDIMFVAV------IGTEFLSKNL--TDGAR 266
           +D ++     R    + +  +   N   I  +           +  +F          A 
Sbjct: 258 ADASMSGVSSRFGQNQQVAEAVANNEGAIAYMALAFTSDQVPPVAIDFDGTVYKPDKDAE 317

Query: 267 NVLTKKM 273
           N +    
Sbjct: 318 NTIFDSA 324


>gi|254230132|ref|ZP_04923527.1| flagellin [Vibrio sp. Ex25]
 gi|262394931|ref|YP_003286785.1| flagellin protein FlaC [Vibrio sp. Ex25]
 gi|151937325|gb|EDN56188.1| flagellin [Vibrio sp. Ex25]
 gi|262338525|gb|ACY52320.1| flagellin protein FlaC [Vibrio sp. Ex25]
          Length = 384

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 53/384 (13%), Positives = 113/384 (29%), Gaps = 52/384 (13%)

Query: 10  SIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSN 69
           ++    N+      +   K  +E+ T            R++S  +    K+  A    SN
Sbjct: 2   AVTVSTNVSAMTAQRYLNKATDELNTSM---------ERLSSGHKINSAKDDAAGLQISN 52

Query: 70  SLVTKR-------------LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGM 116
            L  +              +S +Q    +M +    M     + ++     N       +
Sbjct: 53  RLTAQSRGLDVAMRNANDGISIAQTAEGAMNEATSVMQRMRDLAIQSSNGTNSPAERQAI 112

Query: 117 LRDSYESFVTFAN-----MTDEGQYL----FS------GINSSEKPL-------NGYFTK 154
             +S  + +   N      +  G+ L    F       G +S E  +             
Sbjct: 113 NEESM-ALIDELNRIAETTSFGGRRLLNGSFGEAAFQIGASSGEAMIMGLTSIRADDTRM 171

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNW 214
             +   S +   + +  + +KS L      +       + D    +  K  DD      +
Sbjct: 172 GGVTFLSENGKDKDWGVDPAKSDLKITLPGMGEDEDGNVDDLEININAKAGDDIEELATY 231

Query: 215 SNASDHNIKYRIKDTEGIDVSAN-VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKK- 272
            N     I   + +   + V     N++G   I            + L    +++     
Sbjct: 232 INGQSDMINASVSEDGKLQVFVAHPNVQGEISISGGLASELGLSDEPLRTSVQDIDMTTV 291

Query: 273 -----MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
                 +S +   L  +  QRA LG  +  ++     L N    +D   S+    +    
Sbjct: 292 QGSQNAISVLDSALKYVDSQRADLGAKQNRLSHSINNLANIQENVDASNSRIKDTDFAKE 351

Query: 328 HAQLSTLINKIEMSYMITTKLQKL 351
             Q++      +    I  + ++L
Sbjct: 352 TTQMTKAQILQQAGTSILAQAKQL 375


>gi|294848398|ref|ZP_06789144.1| extracellular matrix-binding protein ebh [Staphylococcus aureus
            A9754]
 gi|294824424|gb|EFG40847.1| extracellular matrix-binding protein ebh [Staphylococcus aureus
            A9754]
          Length = 9692

 Score = 38.5 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
             +++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 IQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
             S    N +                 ++ +                V    +G+      
Sbjct: 6572 ASGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040208|gb|ACT57004.1| flagellin domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 452

 Score = 38.5 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 50/114 (43%), Gaps = 8/114 (7%)

Query: 244 RDIMFVAVIGTEFLSKNLTDGARN--VLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
           ++I     + T  ++++    A N  +  ++M+S +   +         +G     I+ +
Sbjct: 333 KEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQ 392

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
             F++   + ++  + + +  +  +   +LS L  + +++      +Q LSI+N
Sbjct: 393 EDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLA------VQALSIVN 440


>gi|189192791|ref|XP_001932734.1| hypothetical protein PTRG_02401 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978298|gb|EDU44924.1| hypothetical protein PTRG_02401 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1056

 Score = 38.5 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%)

Query: 143 SSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLED 202
           +   P   Y +  S A    D  +QG+   N+ +    Q  +      + +  F   L+D
Sbjct: 798 TQTSPSAAYTSSTSDADARPDTEMQGYGTGNTANFFGQQQPQQQQQRRRPVPRFDMNLKD 857

Query: 203 KFSDDEYWANNWSNASDHNIKYRIKDT 229
            FSDDE    ++S  S+     R   T
Sbjct: 858 LFSDDETDKRSFSRVSNQVNAMRPPPT 884


>gi|159184361|ref|NP_353571.2| hypothetical protein Atu0543 [Agrobacterium tumefaciens str. C58]
 gi|1865674|emb|CAA65301.1| flaB [Agrobacterium tumefaciens str. C58]
 gi|2459722|gb|AAB71798.1| FlaB [Agrobacterium tumefaciens]
 gi|159139676|gb|AAK86356.2| flaB [Agrobacterium tumefaciens str. C58]
          Length = 320

 Score = 38.1 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 100/354 (28%), Gaps = 45/354 (12%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
            T+ I+  +    +  L      +       + +G          A  +       +   
Sbjct: 1   MTSIITNVAAMSALQTLRSIGQ-NMESTQARVSSGLRVGDASDNAAYWSIATTMRSDNMA 59

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           ++    +  L   ++ T+ A +SS   +V+++   LV   E   D  K     G L+   
Sbjct: 60  LSSVSDALGLGAAKVDTASAGMSSAIDVVKEIKAKLVTATEEGVDRTKVQEEIGQLQKQL 119

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
            S    A  +  G+    G+++            +        ++ GF+  +  ++    
Sbjct: 120 ASISQGA--SFYGENWLVGVST--------LGAATPGTDPDKSVVAGFVRASGGAVSVTT 169

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241
                   A     F                   + +       I  T G   +      
Sbjct: 170 TKYALDNTATGNVLFGSV----------------DGTGTPDASGILGTVGTFTTVAAQS- 212

Query: 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEE 301
                                   R     + L+ V+  L  +    A LG     I  +
Sbjct: 213 -----------VYTLDITQYAAADRATNMAEALTLVENSLKAMTSAAAKLGSLSMRIGLQ 261

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
             F    ++ ++  I + +  + +    +L  L  + ++       +Q LSI N
Sbjct: 262 EDFASKLSDSVEKGIGRLVDADMNEESTRLKALQTQQQLG------VQALSIAN 309


>gi|49483625|ref|YP_040849.1| hypothetical protein SAR1447 [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|81651134|sp|Q6GGX3|EBH_STAAR RecName: Full=Extracellular matrix-binding protein ebh; AltName:
            Full=ECM-binding protein homolog; Flags: Precursor
 gi|49241754|emb|CAG40444.1| very large surface anchored protein [Staphylococcus aureus subsp.
            aureus MRSA252]
          Length = 10746

 Score = 38.1 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6332 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6391

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6392 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6451

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6452 TNKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6508

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6509 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6567

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    +G+      
Sbjct: 6568 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6626

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6627 LATAKQQAKDALRQMTHLSDAQKQSITVQIDNATQVTGVQSVKDNATNLDNAMNQLRNSI 6686

Query: 343  M 343
             
Sbjct: 6687 A 6687


>gi|308161272|gb|EFO63726.1| Syntaxin-like protein 1 [Giardia lamblia P15]
          Length = 293

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 46/163 (28%), Gaps = 16/163 (9%)

Query: 194 TDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI-----KDTEGIDVSANVNMRGIRDIMF 248
            DFI +  D  +         S  +  +    I        E I+ +       I  +  
Sbjct: 6   DDFIDEPNDSQNLLPAEKPATSKTASGSGASPIPKEILSAYEVINGAIKRVDDAIISLSE 65

Query: 249 VAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNK 308
                    ++      +N +  K+     + L  + E    LG  +  +  +      +
Sbjct: 66  ATRKADSINTEPELKEFKNTINSKVAEIKGKMLREVTESIKDLGKQQAALQRKEALDDAQ 125

Query: 309 NNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351
           + II                  ++    +++    IT KL  L
Sbjct: 126 SVIIAGKKRSYQ--------QTVTNKETQLD---SITKKLAHL 157


>gi|238799423|ref|ZP_04642852.1| Flagellar hook-associated protein 3 [Yersinia mollaretii ATCC
           43969]
 gi|238716727|gb|EEQ08614.1| Flagellar hook-associated protein 3 [Yersinia mollaretii ATCC
           43969]
          Length = 320

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 36/333 (10%), Positives = 102/333 (30%), Gaps = 31/333 (9%)

Query: 22  LNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQA 81
                ++  +++ TG+            +  +   Q ++  ++   + S     LS    
Sbjct: 13  AQSLWMQSGQQLSTGKRVVNPSDDPMAASQAVMVSQSQSENSQYTLARSFARNELSQETK 72

Query: 82  HLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN-MTDEGQYLFSG 140
            L  +   +Q +   ++        ++     A  L+   +  +  AN     G+Y F+ 
Sbjct: 73  TLEQVTSTIQSIQSIIISAKSDILSDDDRASYATQLQGLKDQLLNQANSTNGSGRYTFAA 132

Query: 141 INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200
             S + P        ++  +  D  ++  ++ + +  +      V             + 
Sbjct: 133 FKSDKPPFV-VSATGAVTYQGGDVAIEQKVDASREMTIGHTGSSVFLALTSNAK---PEP 188

Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN 260
           +D   +      N  N  D  +K        +          +++     +         
Sbjct: 189 DDAAGNPVAAEANVFNTIDTVLKS-------LKTPLAGATDAVKEQAEAEM--------- 232

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
                      K +  +   L+ ++  +A +G   + ++       ++       ++  +
Sbjct: 233 ----------DKGIRGMANSLNNVLSVQAEVGTQLQELDNLDSLGSDRTLSNKQRLTDLV 282

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            V+   A +        ++ SY   T +Q LS+
Sbjct: 283 DVDYTAAISSYVMQQAALQASYTTFTNMQGLSL 315


>gi|218134725|ref|ZP_03463529.1| hypothetical protein BACPEC_02628 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990110|gb|EEC56121.1| hypothetical protein BACPEC_02628 [Bacteroides pectinophilus ATCC
           43243]
          Length = 524

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 30/78 (38%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
             + +  + + +S +   R+ LG  E  I   +  +      +   +S+ I  +      
Sbjct: 433 AGRSIDKIDEAVSKVSSIRSTLGSYENRIEHTQNNIDTSTENMTAALSRMIDTDMAEEMT 492

Query: 330 QLSTLINKIEMSYMITTK 347
           + ++    ++ +  I ++
Sbjct: 493 EYTSQNVLVQAATSILSQ 510


>gi|86358414|ref|YP_470306.1| flagellin C protein [Rhizobium etli CFN 42]
 gi|86282516|gb|ABC91579.1| flagellin C protein [Rhizobium etli CFN 42]
          Length = 332

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 94/315 (29%), Gaps = 27/315 (8%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            +++N++       + TG             +       +   I+    +  +    + T
Sbjct: 16  LRDINRNMTVTQNHITTGMRVAKAADNAVYWSIATTARTDNKAISAIQDALGMAAATMGT 75

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +   + ++  +V ++   LV   E   D NK       L++   S    A    +   + 
Sbjct: 76  AYTGVQNVIDVVSEIKAKLVAATENGVDKNKINEELKQLQEQLRSVSESATFNSDNWVI- 134

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
             +N+   P        S  + S   +  G L  +  +   G         + +   ++ 
Sbjct: 135 --LNNDATPTQPRQIPASFIRNSDGTVSIGMLSYHIDNTPVG-------ATSSKDARYLI 185

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
                 S +     +   A+       +   +   +  + N                 + 
Sbjct: 186 DDRATGSGEYGVLTSAYFAT------ELGTAQNYVLMTSKNGT-----------TAGQVV 228

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            +L+         +M+S V   L+ +    +  G  EK I  +  F    ++ I   I +
Sbjct: 229 ISLSAATTQGQIGEMISVVDAALTQLTTVGSAFGALEKRIELQNDFATQLHDNITAGIGR 288

Query: 319 SIGVEQHTAHAQLST 333
            +  +     ++L  
Sbjct: 289 LVDADMEEESSRLRA 303


>gi|282904016|ref|ZP_06311904.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus subsp. aureus C160]
 gi|282595634|gb|EFC00598.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus subsp. aureus C160]
          Length = 10468

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6337 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6396

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6397 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6456

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6457 TNKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6513

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6514 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6572

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    +G+      
Sbjct: 6573 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6631

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6632 LATAKQQAKDALRQMTHLSDAQKQSITVQIDNATQVTGVQSVKDNATNLDNAMNQLRNSI 6691

Query: 343  M 343
             
Sbjct: 6692 A 6692


>gi|254512850|ref|ZP_05124916.1| type I secretion membrane fusion protein, HlyD family
           [Rhodobacteraceae bacterium KLH11]
 gi|221532849|gb|EEE35844.1| type I secretion membrane fusion protein, HlyD family
           [Rhodobacteraceae bacterium KLH11]
          Length = 435

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 7/142 (4%)

Query: 216 NASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLS 275
           NA    +  +I       V     + G +  +    I  + +   LTD  +  L ++ L+
Sbjct: 150 NARLETLTQQIDQLGKQKVQIGNEIEGTQAQLAALNIQVDLIRTELTD--QQGLLERGLT 207

Query: 276 TVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLI 335
              + +S +  + A L      +      L  + +  +  I +     +  A  QL  + 
Sbjct: 208 QASR-VSALQREEANLTGQIGRLESTIARLTGQISTTEIQIVELQATRREEAITQLRDVQ 266

Query: 336 NKI----EMSYMITTKLQKLSI 353
           +++    E    +T +L +L I
Sbjct: 267 SRVVELAERRLSLTERLSRLDI 288


>gi|228907372|ref|ZP_04071230.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis IBL
           200]
 gi|228852233|gb|EEM97029.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis IBL
           200]
          Length = 287

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 62

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q  L S+ +  Q  V  L      +    +       +    
Sbjct: 63  QKDIADSKNVLTQTENTLQGVLKSLTRADQLTVQAL----SEQNGEKELKAIGAEIDQIL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++   P     T
Sbjct: 119 KQVVYLANTKEQGRYIFGGDSAENPPFTEDGT 150


>gi|148508383|gb|ABQ76164.1| halobacterial transducer-like protein [uncultured haloarchaeon]
          Length = 398

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 11/127 (8%)

Query: 158 AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNA 217
           +K+ FD  +     E  + +  G+    S +       F+    +    D  +  N   A
Sbjct: 206 SKEIFDAGVTQITGEQVRGIYQGEITNWSEIGGPDQEIFVIGRAEGSGTDTSFRLNMLGA 265

Query: 218 SDHNIK---YRIKDTEGIDVSANVNMRGIRDIMFVAV------IGTEFLSKNL--TDGAR 266
           +D ++     R    + +  +   N   I  +           +  +F          A 
Sbjct: 266 ADASMSGVSSRFGQNQQVAEAVANNEGAIAYMALAFTSDQVPPVAIDFDGTVYKPDKDAE 325

Query: 267 NVLTKKM 273
           N +    
Sbjct: 326 NTIFDSA 332


>gi|228984823|ref|ZP_04144995.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229155310|ref|ZP_04283421.1| Flagellar hook-associated protein 3 [Bacillus cereus ATCC 4342]
 gi|228628235|gb|EEK84951.1| Flagellar hook-associated protein 3 [Bacillus cereus ATCC 4342]
 gi|228775021|gb|EEM23415.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 287

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 49/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L G     +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLTVQALNGTNSEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSTEKLPFTEDGT 150


>gi|218886715|ref|YP_002436036.1| flagellar hook-associated protein 3 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757669|gb|ACL08568.1| flagellar hook-associated protein 3 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 497

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 33/88 (37%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
             + L  +  G + ++   + +G  E  +   +       +     +S  +  +      
Sbjct: 410 IAESLKAITAGQAKMLSAASNIGAREVRLEHIQTANTLLASTAKNAVSNVVDADTTELAT 469

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           QLS L    E      + + KLS+L+YL
Sbjct: 470 QLSKLTTVYEAVLSTQSAVMKLSLLDYL 497



 Score = 36.2 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 44/139 (31%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST+  +         L  +  +L  +M T Q  +            L      N + + 
Sbjct: 3   ISTNMTYSNSLKYMTRLQSNINRLTIQMATQQRINCPSDDPYGTEVALTNSTLINQLTQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       LS +   L      +  ++        G   +      A   R  YE  V
Sbjct: 63  QSNVDTAKGWLSLADDTLGDASTALASLIELAEQAATGTLTDANRLAIAEEARGLYEQLV 122

Query: 126 TFANMTDEGQYLFSGINSS 144
           T A+    GQ +F+G +S 
Sbjct: 123 TCASTRYNGQSIFAGRDSG 141


>gi|317152828|ref|YP_004120876.1| flagellar hook-associated protein 3 [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943079|gb|ADU62130.1| flagellar hook-associated protein 3 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 397

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 53/399 (13%), Positives = 113/399 (28%), Gaps = 51/399 (12%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           IST  IF +          D  KL+    + +  +        + +++E       ++  
Sbjct: 3   ISTPQIFSQSLNQINSSLIDVAKLNSINSSQKKLNSPSDDPFGMGTVIELRGYDKTLSGY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
           +++     + LS +   L    +I+                  +  + A  +    +S +
Sbjct: 63  VNNCKTAAESLSLADDILLQASEIITAAREQAEQAASETYTAAQLQMMADEMASYLDSLM 122

Query: 126 TFANMTDEGQYLFSGINSSEKP----LNGYFTKDSLAKKSF------------------D 163
           T AN       +F G +         L    T DSL+  SF                  D
Sbjct: 123 TMANTQMGTDSIFGGDSLDSTAYEMGLGVTMTNDSLSNASFVSIEGELDSAVVSVRLGTD 182

Query: 164 QMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA------------ 211
            ++     E S S   G+    +++ A      +   + + +                  
Sbjct: 183 GVIGTDEIEYSYSTDGGETWTSATLAAGDTVLDLGSCQVELAAGTAVTEADGDGEGTEFI 242

Query: 212 ---NNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNV 268
                    SD  +   I  +  + +   V       +      G  +   NL +   N 
Sbjct: 243 VRKAAVYTGSDTAMTVAISGSSTVAM-TTVGSSVFGGVDQS---GAGYGEPNLFETISNC 298

Query: 269 L----------TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
           +              L  ++     +    A +G  E  +      +     I    IS+
Sbjct: 299 IAFMETGNHAGVAACLDELRSAQESLEAANANIGARENKVTYTSEAISQVRTITGNSISR 358

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               +      +L       E     +  + ++S+L+Y+
Sbjct: 359 VEDADAAQILVELEQANYVYEAVLTSSASIMRMSLLDYI 397


>gi|218236044|ref|YP_002366424.1| flagellar hook-associated protein FlgL [Bacillus cereus B4264]
 gi|218164001|gb|ACK63993.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           B4264]
          Length = 287

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 62

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q  L S+ +  Q  V  L      +    +       +    
Sbjct: 63  QKDIADSKNVLTQTENTLQGVLKSLTRADQLTVQAL----SEQNGEKELKAIGAEIDQIL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++ + P     T
Sbjct: 119 KQVVYLANTKEQGRYIFGGDSAEKPPFTEDGT 150


>gi|86356320|ref|YP_468212.1| flagellin C protein [Rhizobium etli CFN 42]
 gi|86280422|gb|ABC89485.1| flagellin C protein [Rhizobium etli CFN 42]
          Length = 301

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+ V+  L  +    A LG     I+ +  F+   ++ ID+ I + +  +     +
Sbjct: 211 IQSALTNVESALKSMTSAGAALGSLSSRIDSQEDFVSALSDSIDSGIGRLVDADMEEESS 270

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 271 KLSALQTQQQLA------IQSLSIAN 290


>gi|190890372|ref|YP_001976914.1| flagellin C protein [Rhizobium etli CIAT 652]
 gi|190695651|gb|ACE89736.1| flagellin C protein [Rhizobium etli CIAT 652]
          Length = 301

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+ V+  L  +    A LG   K I+ +  F+   ++ ID+ + + +  +     +
Sbjct: 211 IQTALTNVEAALKSMTSAGAALGSLSKRIDNQEDFVSALSDSIDSGVGRLVDADMEEESS 270

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 271 KLSALQTQQQLA------IQSLSIAN 290


>gi|229017027|ref|ZP_04173947.1| Flagellar hook-associated protein 3 [Bacillus cereus AH1273]
 gi|228744298|gb|EEL94380.1| Flagellar hook-associated protein 3 [Bacillus cereus AH1273]
          Length = 249

 Score = 38.1 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 41/105 (39%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
            +     +    +I +     +     LS ++  L  + K +  +    +  + G    N
Sbjct: 8   ASKSFAIQHSLANIEQMQKDIADSRNVLSQTENTLQGIVKSLTRVEQLTLQAVNGTNSPN 67

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +   +A  +    +  V  AN  ++G+Y+F G ++S+ P     T
Sbjct: 68  ELKASAAEIDQLLKQVVYLANKQEQGRYIFGGDSASKPPFAEDGT 112


>gi|125978184|ref|XP_001353125.1| GA17375 [Drosophila pseudoobscura pseudoobscura]
 gi|195173420|ref|XP_002027489.1| GL10310 [Drosophila persimilis]
 gi|54641876|gb|EAL30626.1| GA17375 [Drosophila pseudoobscura pseudoobscura]
 gi|194114390|gb|EDW36433.1| GL10310 [Drosophila persimilis]
          Length = 1637

 Score = 38.1 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 90/293 (30%), Gaps = 29/293 (9%)

Query: 59   KNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQ-DMVGPLVILLEGKTDNNKFPINAGML 117
               I E  +SN  V       +     + +         + +L   KT ++K        
Sbjct: 1325 LKQINELSNSNGEVFADFEEERTLAEVLLERADKQKQDDIELLNRAKTAHDKATKAVEQG 1384

Query: 118  RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSL 177
             ++ +      N         +G  S  +         + A ++   +        S   
Sbjct: 1385 DNTLKEANNTYNT-------LAGFQSDVQ---RSSESAAQALQTVPNIELEIQNAESLIG 1434

Query: 178  LAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237
             AG+ L+ ++ NA +     ++ + K+++          AS      R K  E    + N
Sbjct: 1435 QAGEALDGANKNANEAKKNAQEAQKKYAE---------QASKDAELIRRKANETKVAARN 1485

Query: 238  VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297
            +     +    V +   +      +    + L       V Q        +A    ++K 
Sbjct: 1486 LRDEADQLNHRVKLTEMDIFKLEESSTKDDNLVDDAKRKVGQA-------KADTQEAQKQ 1538

Query: 298  INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
            I +    L    + ++  +      +      +L+ +  +I     +T +++K
Sbjct: 1539 IEKANAELTAIKDELEN-LKDINTADLDKLENRLTIVEGEINRV-NLTGRIEK 1589


>gi|260574411|ref|ZP_05842415.1| flagellin domain protein [Rhodobacter sp. SW2]
 gi|259023307|gb|EEW26599.1| flagellin domain protein [Rhodobacter sp. SW2]
          Length = 400

 Score = 38.1 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 110/374 (29%), Gaps = 52/374 (13%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           + I T++         K +N +  K   E+ TG+S        A        E +     
Sbjct: 2   SSILTNTSAMVALQTMKGINANMNKTQAEISTGKSVASAKDNAAVWAISKVMESDVQGFK 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               S +L +  ++ ++    ++  ++  + G +V   E   D  K   +   L    ES
Sbjct: 62  GISDSLALGSSTVAVARKASETVTDLLTQIKGKIVAAQEANVDRGKIDADVKALTKQIES 121

Query: 124 FVTFANMTDEGQYLFSGINSSE------------------------------KPLNGYFT 153
            V  A     G  L +G  S+                                 L     
Sbjct: 122 VVGAA--QFNGLNLVNGSKSTVDILASLDRSGAGVTASNITVTAQNLSTNAGAALTNGTL 179

Query: 154 KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV--SSMNAQQMTDFIK------------- 198
             +      D  L GF  + +   LA        + + A    D I              
Sbjct: 180 SAASVVTGTDVTLDGFTFQETGGALASNDPLAVPTDLTALLAGDSISLKIGSVEGKYVVQ 239

Query: 199 --QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEF 256
                D        + + +  SD +    I     + V+ N N+    DI   A  GT  
Sbjct: 240 QGDNADSLISGLKNSLSQNGLSDTDFTLSITGAGELTVANNTNVAA--DISVAASRGTGA 297

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
           L+  L            L+ ++  + G I+  +  G  +K I  +  F+   ++ +   I
Sbjct: 298 LA-GLNSIDVQTNAAGALTAIEDMVKGAIDAASSFGSVQKRIEIQSSFVSELSDSLKAGI 356

Query: 317 SKSIGVEQHTAHAQ 330
              +        A+
Sbjct: 357 GSMVDANMEETSAR 370


>gi|209550137|ref|YP_002282054.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535893|gb|ACI55828.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 332

 Score = 38.1 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 98/315 (31%), Gaps = 27/315 (8%)

Query: 19  TKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLST 78
            +++N++       + TG         G   +       +   ++    +  +    + T
Sbjct: 16  LRDINRNMTVTQNHITTGMRVAKAADNGVYWSVATTARTDNKAVSAIQDALGMAAATMGT 75

Query: 79  SQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLF 138
           +   + ++  +V ++   LV   E   D NK       L++   S    A    +   + 
Sbjct: 76  AYTGVENVIDVVSEIKAKLVAATEDGIDKNKVNEEIKQLQEQLRSVSESATFNSDNWVI- 134

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK 198
             +N+   P        S  + +   +  G L  +  +   G         + +   ++ 
Sbjct: 135 --LNNDATPTQPRQIPASFIRNADGTVSVGMLSYHIDNTPVG-------ATSSKDARYLI 185

Query: 199 QLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
                 S +     +   A+       +  ++   +  + N      ++           
Sbjct: 186 DDRATGSGEYGVLTSAYFAT------ELGASQNYVLMESKNGTTTGQVV----------- 228

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            +L+D        +M+S V   L+ +    +  G  EK IN +  F    ++     I +
Sbjct: 229 ISLSDATTKGQIGEMISVVDAALTQLTTVGSAFGALEKRINLQNDFASKLHDNNTAGIGR 288

Query: 319 SIGVEQHTAHAQLST 333
            +  +     ++L  
Sbjct: 289 LVDADMEEESSKLKA 303


>gi|196044977|ref|ZP_03112210.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           03BB108]
 gi|228926775|ref|ZP_04089843.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|196023979|gb|EDX62653.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           03BB108]
 gi|228832888|gb|EEM78457.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 287

 Score = 38.1 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 49/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L G     +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLTVQALNGTNSEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEKPPFTEDGT 150


>gi|58532899|ref|YP_195122.1| Hypothetical-Protein | belonging to T4-LIKE GC: 830 [Synechococcus
            phage S-PM2]
 gi|58331366|emb|CAF34152.1| Hypothetical-Protein | belonging to T4-LIKE GC: 830 [Synechococcus
            phage S-PM2]
          Length = 3338

 Score = 38.1 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 81/278 (29%), Gaps = 31/278 (11%)

Query: 86   MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSE 145
            +       V P  + + G            +   +    VT   +   G  LF G   + 
Sbjct: 2052 ITDPGSGYVTPPTLTITGGNPALGAVEAKAVATIASGQVVTVEIIEFNG--LFGGKGYTT 2109

Query: 146  KP-LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKF 204
            +P +       +    S   +L+  L  N  + +     +   + +  +   +  L    
Sbjct: 2110 QPTVTFSQPPGAGTAASGTALLESRLYGNIVNNIKIDDQDA--IESSDVPADVINLSRVI 2167

Query: 205  SDDEYWANNWSNASDHNIKYR------IKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
            +     + NW + S + I         I  T   + S   N            +  + + 
Sbjct: 2168 NTSASLSTNWVSLSSNQIAASDITSGVISSTRLANNSDAANSFTFLRGDQAYALTVQSI- 2226

Query: 259  KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
                 GA +    ++++   QG             S+  +      +   + IID     
Sbjct: 2227 ----KGAESRYFARLITAASQG-------------SQTLVFSTNSDILRGHAIIDN--ID 2267

Query: 319  SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNY 356
             I  +   +    +     IE+S  +   L   +IL +
Sbjct: 2268 GIPEDTTVSSVLTTGGTTTIEISEPLDGNLASGTILEF 2305


>gi|304558599|gb|ADM41263.1| Flagellar hook-associated protein FlgL [Edwardsiella tarda FL6-60]
          Length = 311

 Score = 38.1 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 14/210 (6%)

Query: 156 SLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWS 215
           S   KS D       +  S           +  N + +    K     F+        +S
Sbjct: 99  SSGTKSDDDRAAIATQLESMRDQLLNLANSTDGNGRYIFAGYKSDAAPFTKGAASEVTYS 158

Query: 216 NASDHNIKYRIKDTEGIDVSANVNM-----RGIRDIMFVAVIGTEFLSKNL---TDGARN 267
              D  +  ++     + VS   N      +G +DI        + L   L    D A+ 
Sbjct: 159 GG-DKALTQQVDAARTMTVSHTGNQVFQPGKGEQDIFASLQQAIDALKTPLEGKDDAAKK 217

Query: 268 VLTK---KMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI-IDTYISKSIGVE 323
            ++         ++  L+ +   RA LG ++ N  +    + ++N I   T IS    V+
Sbjct: 218 AVSDDLDSANRGLRNSLNNVSRVRAELG-TQLNELDSLDAIGDENAITYKTRISSVQDVD 276

Query: 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
              A +  S     ++ SY + + +Q +S+
Sbjct: 277 WTQAISDYSFRQVSLQASYKVFSDMQGMSL 306


>gi|254230133|ref|ZP_04923528.1| flagellar hook-associated protein 3 [Vibrio sp. Ex25]
 gi|262394932|ref|YP_003286786.1| flagellar hook-associated protein FlgL [Vibrio sp. Ex25]
 gi|151937326|gb|EDN56189.1| flagellar hook-associated protein 3 [Vibrio sp. Ex25]
 gi|262338526|gb|ACY52321.1| flagellar hook-associated protein FlgL [Vibrio sp. Ex25]
          Length = 397

 Score = 38.1 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 11/168 (6%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQLGARVTSILEWEQ 57
             T IS+   ++ +    +          E++ +G+     SD  L          + EQ
Sbjct: 1   MLTRISSFHNYQSVQNDLRRQENKVHHNQEQLASGKKLLKPSDDPLASHYIQNISQQQEQ 60

Query: 58  EKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML 117
            + +++  +    LV  RL   + ++++ +    +     + ++ G             L
Sbjct: 61  LQQYLSSIV----LVRNRLENHEVNIANAENFADESKRLTMEMINGAFSAEDRQAKKREL 116

Query: 118 RDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
            +   +F+   N  D  G Y+F+G     +P   Y  KD   + + D 
Sbjct: 117 EEIANNFLNLVNSQDESGNYVFAGTKPKSQPF--YRDKDGSVQYAGDD 162


>gi|221140998|ref|ZP_03565491.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus subsp. aureus str. JKD6009]
          Length = 8712

 Score = 37.8 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6336 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6395

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6396 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6455

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6456 TKKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6512

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
             +++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6513 IQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6571

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
             S    N +                 ++ +                V    +G+      
Sbjct: 6572 ASGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6630

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6631 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6690

Query: 343  M 343
             
Sbjct: 6691 A 6691


>gi|115629210|ref|XP_001178955.1| PREDICTED: similar to CRP-ductin-alpha [Strongylocentrotus
           purpuratus]
 gi|115953906|ref|XP_001185705.1| PREDICTED: similar to CRP-ductin-alpha [Strongylocentrotus
           purpuratus]
          Length = 982

 Score = 37.8 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 23/130 (17%)

Query: 139 SGINSSEKPLNGYFTKDSLAKKSFDQMLQGFL------EENSKSLLAGQHLEVSSMNAQQ 192
           +GI S   PL G   + S    S D +L           +++    +      + +    
Sbjct: 793 AGI-SGISPLTGGRREPSALVLS-DAVLGDLSLSLVQYMDDAFGSSSSNASSGTDLFGTW 850

Query: 193 MT-----------DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDT----EGIDVSAN 237
           M            +    ++     D  W     +A D +    I+D     + I + A+
Sbjct: 851 MEGVQPGQNVFAVNLTSSVDANVFVDSCWTTPGPDAQDQDTTSLIQDGCEIDDTIHIGAS 910

Query: 238 VNMRGIRDIM 247
            +    R I 
Sbjct: 911 ADDPRFRPIA 920


>gi|241206930|ref|YP_002978026.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860820|gb|ACS58487.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 311

 Score = 37.8 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 112/352 (31%), Gaps = 54/352 (15%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + +N         + +G   +      A  +       +   ++
Sbjct: 2   TSILTNNAAMAALQTLRGVNDSLKDTQGRVSSGYRVEKAADNAAYWSIATTMRSDNKALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+ + + S   +V D+   +V   E   D  K       L++   S
Sbjct: 62  AVSDALGLGAAKVDTAYSAMDSALDVVSDIKAKIVAATEKGVDKTKIQQELDQLQEQLLS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N        +    S  K      +                 
Sbjct: 122 IAQSAS--------FSGEN--------WVAGASGTKSVVSSFV----------------R 149

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           + S+  + +MTD++                  + S  N+ + +  T  I+ S+ +     
Sbjct: 150 DGSNAVSVKMTDYVLD----------------SGSLGNVLFGMTSTGAIETSSGIIGTAF 193

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                  VI    +      G         L+ V+  L  +    + LG     I  +  
Sbjct: 194 NGTYGSTVIVMASIYDLDITGFTQGQLDAALTGVELVLGAMTAAGSALGSISTRIQLQET 253

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+   ++ ID+ + + +  +     ++LS L  + +++      +Q LSI N
Sbjct: 254 FVSGLHDSIDSGVGRLVDADMEEESSRLSALQTQQQLA------IQSLSIAN 299


>gi|331220317|ref|XP_003322834.1| hypothetical protein PGTG_04371 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309301824|gb|EFP78415.1| hypothetical protein PGTG_04371 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 364

 Score = 37.8 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 2/118 (1%)

Query: 142 NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEE-NSKSLLAGQHLEVSSMNAQQMTDFIKQL 200
            +   P N   ++ S      +    G     + KS  +   +  S    + M  FI   
Sbjct: 49  ETFVTPSNNSSSQLSPDLAVPNNSRIGQSTSQDYKSPESATQVNPSHHIPENMESFISIT 108

Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLS 258
           +   S +  +    S  S+  +   +   E   +  +    G+R     A     F  
Sbjct: 109 DSSASGERSYTTRVSANSEERLSSHLPQGEEAQLE-SAKNDGLRSPSVNAPSIRTFGD 165


>gi|124268715|ref|YP_001022719.1| hydrolase or acyltransferase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124261490|gb|ABM96484.1| hydrolase or acyltransferase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 425

 Score = 37.8 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 12/85 (14%)

Query: 17  ILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV---- 72
               EL  D+ +L  E+ TG     GL LG  V   L     +  +   + +NS      
Sbjct: 229 YTMAELADDAERLLAELDTGPVVWIGLSLGGMVGQELALRHPR-RVEALVIANSSAGFDE 287

Query: 73  ------TKRLSTS-QAHLSSMQKIV 90
                  +R+    Q  + ++    
Sbjct: 288 AGRNAWQQRIDAVAQGGVDAVADAA 312


>gi|330895344|gb|EGH27682.1| host specificity protein J [Pseudomonas syringae pv. japonica str.
            M301072PT]
          Length = 1379

 Score = 37.8 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 10/127 (7%)

Query: 29   LHEEMVTGQSSDYGLQLGARVTSILEWEQEK-NHIAERLHSNSLVTKRLSTSQAHLSSMQ 87
               E      +     +GA    I +  +   +++A    + + +T R+  + A + S  
Sbjct: 1137 SQNEATARTVTQLTASVGANTGQITDLREVVTSNLASTATAITQLTTRVGDNSAAIQSEA 1196

Query: 88   KIVQDMVGPL----VILLEGKTDNNKFPINAGMLRDSYESFVTFA-----NMTDEGQYLF 138
                +  G L                    A          V+       + T  G+ + 
Sbjct: 1197 TARSNADGALSSQISTAQATANGATAQAQTASTAVSGLNGKVSALTTIKTSTTVGGRTVM 1256

Query: 139  SGINSSE 145
            +G+    
Sbjct: 1257 AGLAIGV 1263


>gi|226327735|ref|ZP_03803253.1| hypothetical protein PROPEN_01608 [Proteus penneri ATCC 35198]
 gi|225203439|gb|EEG85793.1| hypothetical protein PROPEN_01608 [Proteus penneri ATCC 35198]
          Length = 302

 Score = 37.8 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 2/123 (1%)

Query: 33  MVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQD 92
           + +G+  +         +  +  +Q ++   +   +       +S   +  S M  I   
Sbjct: 18  ISSGRRVEKPSDDPMAASQAVMVKQSESRNQQYATARGFAKNSMSLQMSLASQMVNITTK 77

Query: 93  MVGPLVILLEGKT-DNNKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNG 150
           +   LV      T  +      A  L+   +  V   N  D  G+Y+F+G  S + P   
Sbjct: 78  IQETLVAAGNDATLSDEDRSSLADQLQGLKDQLVGIGNTKDGVGRYIFAGFQSDKPPFVA 137

Query: 151 YFT 153
             T
Sbjct: 138 DAT 140


>gi|190893969|ref|YP_001980511.1| flagellin C protein [Rhizobium etli CIAT 652]
 gi|190699248|gb|ACE93333.1| flagellin C protein [Rhizobium etli CIAT 652]
          Length = 343

 Score = 37.8 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 96/302 (31%), Gaps = 54/302 (17%)

Query: 54  EWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN 113
               +   ++    +  L   ++ T+ A + S   IV ++   +V   E   D  K    
Sbjct: 42  TMRSDNLALSAVSDALGLGAAKVDTAYAAMDSALDIVSEIKEKIVAATEKGVDKTKIQQE 101

Query: 114 AGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEEN 173
              L++   S    A+        FSG N        +    S  K      +       
Sbjct: 102 LDQLQEQLLSIAQSAS--------FSGEN--------WVAGASGTKSVVSSFV------- 138

Query: 174 SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
                     + S+  + +MTD++                  + +  N+ + +  T  I+
Sbjct: 139 ---------RDGSNAVSVKMTDYVLD----------------SGTLGNVLFGMTSTGAIE 173

Query: 234 VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293
            S+ +            VI    +      G         LS ++  L  +    + LG 
Sbjct: 174 TSSGIIGTAFNGTYGGTVIAMPSIYDLDITGFTQGQLDAALSGIELVLGAMTAAGSALGS 233

Query: 294 SEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
               I  +   +   ++ ID+ I + +  +     ++LS L  + ++       +Q LSI
Sbjct: 234 ISTRIQLQENLVSGLHDSIDSGIGRLVDADMEEESSRLSALQTQQQLG------IQSLSI 287

Query: 354 LN 355
            N
Sbjct: 288 AN 289


>gi|90418380|ref|ZP_01226292.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90338052|gb|EAS51703.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 299

 Score = 37.8 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 260 NLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKS 319
            LT    +     M+S V + L  +    + LG ++  ++ +  F+ N  + I+  +   
Sbjct: 199 TLTGATTDANISTMISDVDEALGAMTTAASNLGAAKSRMDIQSEFVSNLRDSIEKGVGTL 258

Query: 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           +  +      +L  L  + ++       +Q LSI N
Sbjct: 259 VDADMTEESTRLKALQTQQQLG------VQALSIAN 288


>gi|118477175|ref|YP_894326.1| flagellar hook-associated protein FlgL [Bacillus thuringiensis str.
           Al Hakam]
 gi|218902854|ref|YP_002450688.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           AH820]
 gi|225863598|ref|YP_002748976.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           03BB102]
 gi|229121291|ref|ZP_04250522.1| Flagellar hook-associated protein 3 [Bacillus cereus 95/8201]
 gi|229183931|ref|ZP_04311147.1| Flagellar hook-associated protein 3 [Bacillus cereus BGSC 6E1]
 gi|118416400|gb|ABK84819.1| flagellar hook-associated protein 3 [Bacillus thuringiensis str. Al
           Hakam]
 gi|218537108|gb|ACK89506.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           AH820]
 gi|225788652|gb|ACO28869.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           03BB102]
 gi|228599583|gb|EEK57187.1| Flagellar hook-associated protein 3 [Bacillus cereus BGSC 6E1]
 gi|228662136|gb|EEL17745.1| Flagellar hook-associated protein 3 [Bacillus cereus 95/8201]
          Length = 287

 Score = 37.8 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 49/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L G     +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLTVQALNGTNSEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEKPPFTEDGT 150


>gi|86356321|ref|YP_468213.1| flagellin C protein [Rhizobium etli CFN 42]
 gi|86280423|gb|ABC89486.1| flagellin C protein [Rhizobium etli CFN 42]
          Length = 302

 Score = 37.8 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+ V+  L  +    A LG   K I  +  F+   ++ ID+ I + +  +     +
Sbjct: 211 IQTALTNVESALKSMTSAGAALGSISKRIELQENFVSALSDSIDSGIGRLVDADMEEESS 270

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 271 KLSALQTQQQLA------VQSLSIAN 290


>gi|85110074|ref|XP_963224.1| hypothetical protein NCU09469 [Neurospora crassa OR74A]
 gi|28924894|gb|EAA33988.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|38524252|emb|CAE75717.1| related to EDE1 protein [Neurospora crassa]
          Length = 1285

 Score = 37.8 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 38/126 (30%), Gaps = 4/126 (3%)

Query: 226 IKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLST--VQQGLSG 283
           +        + +    G+R       +  + L         N L+ +      +   +  
Sbjct: 490 LTTHVTGGSTGSAPAGGVRTSPMPPTVEDDLLGDA-DPEVNNKLSNETTELANLSNQIGS 548

Query: 284 IIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYM 343
           + +Q   +     N   E      +    +  +++   + +  A   +  L  ++  +  
Sbjct: 549 LTKQVQDVQTQRTNTQNELSQASQQKKNFEQRLTQLRALYEKEA-QDVRALETQLSTAKA 607

Query: 344 ITTKLQ 349
            T KLQ
Sbjct: 608 ETKKLQ 613


>gi|323697479|ref|ZP_08109391.1| flagellar hook-associated protein 3 [Desulfovibrio sp. ND132]
 gi|323457411|gb|EGB13276.1| flagellar hook-associated protein 3 [Desulfovibrio desulfuricans
           ND132]
          Length = 554

 Score = 37.8 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 6/203 (2%)

Query: 15  MNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTK 74
           +N     L   ++K   +    + SD        +T IL+       + +   + S    
Sbjct: 16  LNTSLTSLMDLNIKAQTQKAINKPSDDP----TGMTRILDHRDTLRSLDQYSENISTAKG 71

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG 134
            L ++   L  +  I+            G  D+N     +  +R  +E  V+ +N   E 
Sbjct: 72  WLGSADEALMQVSTILTRAKELATQAATGTVDDNNREQISYEMRSLFEQLVSLSNSDFED 131

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
             +F+G  +            +  +   +         ++  L+       ++     M 
Sbjct: 132 NSIFAGHKTDGAAFKQIMWLTTNDETFGNAEFTVNGSSDTTVLVQYYDTTGATPVGGDMN 191

Query: 195 DFIKQLEDKFSDDEY--WANNWS 215
                L  ++S D    W  + S
Sbjct: 192 LSDPNLGVRYSIDGGRTWKTDGS 214


>gi|317052130|ref|YP_004113246.1| hypothetical protein Selin_1963 [Desulfurispirillum indicum S5]
 gi|316947214|gb|ADU66690.1| hypothetical protein Selin_1963 [Desulfurispirillum indicum S5]
          Length = 1509

 Score = 37.8 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 1/104 (0%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVIL-LEGKTD 106
           R++  L ++   +   +   + S     L+ S   L SM  I+Q       +        
Sbjct: 45  RISQALSFQNSIDLFTQYQRNISNAQTWLNLSDGSLQSMSSILQMAKNNYALAGASDSMS 104

Query: 107 NNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNG 150
            +     A  +       ++  N     +Y+F G  + ++P   
Sbjct: 105 PDARKALANDVEAMRNELISLGNTKHLDRYIFGGYQTRDEPFQE 148


>gi|312438162|gb|ADQ77233.1| extracellular matrix binding protein [Staphylococcus aureus subsp.
            aureus TCH60]
          Length = 7075

 Score = 37.8 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6332 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6391

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6392 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6451

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6452 TNKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6508

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6509 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6567

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    +G+      
Sbjct: 6568 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6626

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6627 LATAKQQAKDALRQMTHLSDAQKQSITVQIDNATQVTGVQSVKDNATNLDNAMNQLRNSI 6686

Query: 343  M 343
             
Sbjct: 6687 A 6687


>gi|209967003|ref|YP_002299918.1| flagellar protein Laf1 (LafA or FlaB) [Rhodospirillum centenum SW]
 gi|209960469|gb|ACJ01106.1| flagellar protein Laf1 (LafA or FlaB) [Rhodospirillum centenum SW]
          Length = 435

 Score = 37.8 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 40/94 (42%), Gaps = 6/94 (6%)

Query: 262 TDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321
                  +    ++TV   ++   ++ A +G  ++ ++  + F +  ++ ++  +   + 
Sbjct: 337 AAEQYKNVKSSAIATVDSAITLAGQKLATIGAIQRQVSGLQEFTKTLSDTLNEGLGALVD 396

Query: 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
            +     A+L  L  + +++      +Q LSI N
Sbjct: 397 ADMADESARLQALQTRQQLA------IQSLSIAN 424


>gi|160901876|ref|YP_001567457.1| flagellar hook-associated protein 3 [Petrotoga mobilis SJ95]
 gi|160359520|gb|ABX31134.1| flagellar hook-associated protein 3 [Petrotoga mobilis SJ95]
          Length = 298

 Score = 37.8 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 7/148 (4%)

Query: 1   MKTT--GISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQE 58
           M+ T   +S+ ++ +  ++L K        L+ ++ +G+   Y     A  T I   +  
Sbjct: 1   MRITENLLSSRTLNDIQDVLRK-----YSDLNSQLTSGKKVRYPSDNAAVATRISNLDSR 55

Query: 59  KNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLR 118
              I     +       ++     L  +  I   +    V               +  L 
Sbjct: 56  LREIERYKTNVETAQNYVNMYDTALQEVSSIYLRVKELAVRGANDTLTKEDKVAISEELN 115

Query: 119 DSYESFVTFANMTDEGQYLFSGINSSEK 146
                 V+ AN    G Y+F G  +++K
Sbjct: 116 KINTQLVSIANTEISGNYVFGGAKNNQK 143


>gi|209547938|ref|YP_002279855.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533694|gb|ACI53629.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 303

 Score = 37.8 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
               L++++ GL  + +  + LG     I  +  F+   ++ ID+ + + +        +
Sbjct: 212 ISMALTSIEAGLDAMTKAASQLGSISTRIELQENFVGALSDSIDSGVGRLVDANMEEESS 271

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +L+ L  + +++      +Q LSI N
Sbjct: 272 KLTALQTQQQLA------IQSLSIAN 291


>gi|282916702|ref|ZP_06324460.1| extracellular matrix-binding protein [Staphylococcus aureus subsp.
            aureus D139]
 gi|282319189|gb|EFB49541.1| extracellular matrix-binding protein [Staphylococcus aureus subsp.
            aureus D139]
          Length = 9011

 Score = 37.8 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6289 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6348

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   N   +    
Sbjct: 6349 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKANENYIDADP 6408

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6409 TKKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6465

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6466 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6524

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    +G+      
Sbjct: 6525 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6583

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6584 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 6643

Query: 343  M 343
             
Sbjct: 6644 A 6644


>gi|317121032|ref|YP_004101035.1| flagellin domain protein [Thermaerobacter marianensis DSM 12885]
 gi|315591012|gb|ADU50308.1| flagellin domain protein [Thermaerobacter marianensis DSM 12885]
          Length = 485

 Score = 37.4 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 53/203 (26%), Gaps = 6/203 (2%)

Query: 149 NGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNA-QQMTDFIKQLEDKFS-- 205
             +   ++    + D         +++    G +    +  A       +       S  
Sbjct: 271 TFFNVANASTGATSDVNAATVAGTDAELGSLGVNGTPVNYEAVGNRITILSGPAKGLSFT 330

Query: 206 -DDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDG 264
            D        SNA D      +     +      N      +    +       K +   
Sbjct: 331 VDASGTYTGGSNADDDP-TITVGTNGALTFQIGANTGQSLSVAIDDMRSQALGVKTVDVS 389

Query: 265 ARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQ 324
            R+      +S +   ++ +  QRA LG  +  +      L      +    S+   V+ 
Sbjct: 390 TRSG-ASNAISAIDSAINTVSVQRARLGAVQNRLEHTIANLGVAVENLQAAESRIRDVDM 448

Query: 325 HTAHAQLSTLINKIEMSYMITTK 347
               A  +     ++    +  +
Sbjct: 449 ALEMANFTRNQILLQSGTAMLAQ 471


>gi|326789958|ref|YP_004307779.1| flagellin domain protein [Clostridium lentocellum DSM 5427]
 gi|326540722|gb|ADZ82581.1| flagellin domain protein [Clostridium lentocellum DSM 5427]
          Length = 283

 Score = 37.4 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVL 291
           I +    N   I ++   ++         L+        +  +  + + ++   + R+ L
Sbjct: 151 ITLQVGANKGQIMELEIGSMTTNALGINGLSIAT-AGDAQNAIDVIDEAVNRTSKTRSKL 209

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLI 335
           G  +  +      L+N+   +    S+   V+   A  + + L 
Sbjct: 210 GAYQNRLEHTINNLENQAENLTAAESRIRDVDMAKAMMEYARLE 253


>gi|269138589|ref|YP_003295289.1| flagellar hook-associated protein [Edwardsiella tarda EIB202]
 gi|267984249|gb|ACY84078.1| flagellar hook-associated protein [Edwardsiella tarda EIB202]
          Length = 311

 Score = 37.4 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 13/165 (7%)

Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM-----RGIRDIMFVAVIGTE 255
           +         +       +  +  ++     + VS   N       G +DI        +
Sbjct: 143 DAAPFTKGAASEVTYGGGNKALTQQVDAARTMTVSHTGNQVFQPGTGEQDIFASLQQAID 202

Query: 256 FLSKNL---TDGARNVLTKK---MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
            L   L    D A+  +  K       ++  L+ +   RA LG ++ N  +    + ++N
Sbjct: 203 ALKMPLEGKDDAAKKAVADKLDSANRGLRNSLNNVSRVRAELG-TQLNELDSLDAIGDEN 261

Query: 310 NI-IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
            I   T IS    V+ + A    +     ++ SY + + +Q +S+
Sbjct: 262 AITYKTRISSVQDVDWNQAITDYTFRQVSLQASYKVFSDMQGMSL 306


>gi|254503983|ref|ZP_05116134.1| Bacterial flagellin N-terminus domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222440054|gb|EEE46733.1| Bacterial flagellin N-terminus domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 320

 Score = 37.4 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 37/318 (11%), Positives = 95/318 (29%), Gaps = 34/318 (10%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
                NK+       + TG   +      A  +       +   ++    S  L    L 
Sbjct: 6   TLSMTNKNMATTQNRISTGLRVNDAADNAAYWSIATTMRSDVGALSAVQDSLGLGAATLD 65

Query: 78  TSQAHLSSMQKIVQDMVGPLVILL-EGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQY 136
            +   ++S    + ++   LV    +  +   K   +   L+   E++   A  +    +
Sbjct: 66  VTFTAINSTVDTLNEIKEKLVAAKGQTDSGREKIQEDISNLQKQLETYANSAVTSSGDNW 125

Query: 137 LFSGINS-SEKP-LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           L     +   +P + G FT++S      +Q+             A   L  S M A    
Sbjct: 126 LVRDPATQDMQPDVVGSFTRNSDGSTRIEQITVDLANVFLIDSAADTGLLDSDMVADLQV 185

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGT 254
                            +  +  +   +   I + +      + N +             
Sbjct: 186 AADAAATADGGTPPVDISRLTGGTASILTIDISNLDE-----SANDK------------- 227

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
                         +   +++ V Q ++ + +    +G S+K ++ +  F++  ++    
Sbjct: 228 -------------YVVDGLVAVVDQKIAALTDAATTIGSSKKRVDSQMDFVKALSDSYTR 274

Query: 315 YISKSIGVEQHTAHAQLS 332
            I + +  + +    +L 
Sbjct: 275 GIGQLVDADMNAESTRLQ 292


>gi|228958019|ref|ZP_04119755.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296502339|ref|YP_003664039.1| flagellar hook-associated protein FlgL [Bacillus thuringiensis
           BMB171]
 gi|228801644|gb|EEM48525.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296323391|gb|ADH06319.1| flagellar hook-associated protein FlgL [Bacillus thuringiensis
           BMB171]
          Length = 287

 Score = 37.4 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 62

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q  L S+ +  Q  V  L     G     +       +    
Sbjct: 63  QKDIADSKNVLTQTENTLQGVLKSLTRADQLTVQAL----NGTNSEKELQAIGVEIDQIL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++   P     T
Sbjct: 119 KQVVYLANTKEQGRYIFGGDSAENLPFTEDGT 150


>gi|229043493|ref|ZP_04191203.1| Flagellar hook-associated protein 3 [Bacillus cereus AH676]
 gi|228725871|gb|EEL77118.1| Flagellar hook-associated protein 3 [Bacillus cereus AH676]
          Length = 287

 Score = 37.4 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 62

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q  L S+ +  Q  V  L     G     +       L    
Sbjct: 63  QKDIADSKNVLTQTENTLQGVLKSLTRADQLTVQAL----NGTNSEKELQAIGVELDQIL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++   P     T
Sbjct: 119 KQVVYLANTKEQGRYIFGGDSAENLPFTEDGT 150


>gi|229166580|ref|ZP_04294332.1| Flagellar hook-associated protein 3 [Bacillus cereus AH621]
 gi|228616834|gb|EEK73907.1| Flagellar hook-associated protein 3 [Bacillus cereus AH621]
          Length = 287

 Score = 37.4 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 50/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ + +  +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQMMDLNVQQQYHRNQVTSGKKNLFMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L G     +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLTVQALNGTNSEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEQVPFTEDGT 150


>gi|161526178|ref|YP_001581190.1| flagellar hook-associated protein FlgL [Burkholderia multivorans
           ATCC 17616]
 gi|189349106|ref|YP_001944734.1| flagellar hook-associated protein FlgL [Burkholderia multivorans
           ATCC 17616]
 gi|160343607|gb|ABX16693.1| flagellar hook-associated protein 3 [Burkholderia multivorans ATCC
           17616]
 gi|189333128|dbj|BAG42198.1| flagellar hook-associated protein 3 [Burkholderia multivorans ATCC
           17616]
          Length = 411

 Score = 37.4 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 37/366 (10%), Positives = 99/366 (27%), Gaps = 57/366 (15%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
                ++       +++   + ++    L      L+++  ++  +   ++   +G   +
Sbjct: 45  GAAQAVQLSMTSATLSQYATNQNVALSSLQKEDQALTTVNDLLNTIHSSVMHAGDGSLSD 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYF-------------- 152
           +     A  L+   +  +T AN TD  G YLF+G  S+  P                   
Sbjct: 105 SDRSALATQLQGYRDQLLTLANSTDGAGNYLFAGYQSTTAPFANGTGGGVVYSGDRGARQ 164

Query: 153 -------------------------------TKDSLAKKSFDQMLQGFLEENSKSLLAGQ 181
                                             +  + +         + ++ +     
Sbjct: 165 VQIADTRTIAQGDDGASVFLSVPMLGSQPVPAAGAANQGTATIGAVTITDPSAATNAHTF 224

Query: 182 HLEVSSMNAQQMTDFIKQLEDKFSDD------EYWANNWSNASDHNIKYRIKDTEGIDVS 235
            +     +A        +     +           A    N     +       +   V 
Sbjct: 225 TITFGGTSAAPTYTVTDETVAPPTTTAPQPYAAGTAIALGNGLSVPVSGTPSPNDTFSV- 283

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLST----VQQGLSGIIEQRAVL 291
                 G      +  +         +D          ++T    +   ++ I+  +A +
Sbjct: 284 TPAPQAGTDVFATLDTMIAALKVPIGSDTVAAAKLANAMTTGTTKLDNTMTNILTVQASV 343

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351
           G  E+ I   +   Q     + + ++        +  +Q   + N +  +     +LQ L
Sbjct: 344 GGREQEIQAMQAVNQTNTLQVTSNLADLTSTNMVSTISQFLQMQNALTGAQKAYAQLQNL 403

Query: 352 SILNYL 357
           S+  Y+
Sbjct: 404 SLFQYI 409


>gi|30019784|ref|NP_831415.1| flagellar hook-associated protein FlgL [Bacillus cereus ATCC 14579]
 gi|229127065|ref|ZP_04256064.1| Flagellar hook-associated protein 3 [Bacillus cereus BDRD-Cer4]
 gi|229144351|ref|ZP_04272757.1| Flagellar hook-associated protein 3 [Bacillus cereus BDRD-ST24]
 gi|29895329|gb|AAP08616.1| Flagellar hook-associated protein 3 [Bacillus cereus ATCC 14579]
 gi|228639138|gb|EEK95562.1| Flagellar hook-associated protein 3 [Bacillus cereus BDRD-ST24]
 gi|228656418|gb|EEL12257.1| Flagellar hook-associated protein 3 [Bacillus cereus BDRD-Cer4]
          Length = 287

 Score = 37.4 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 62

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q  L S+ +  Q  V  L     G     +       +    
Sbjct: 63  QKDIADSKNVLTQTENTLQGVLKSLTRADQLTVQAL----NGTNSEKELQAIGVEIDQIL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++   P     T
Sbjct: 119 KQVVYLANTKEQGRYIFGGDSAENLPFTEDGT 150


>gi|156097114|ref|XP_001614590.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148803464|gb|EDL44863.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 2085

 Score = 37.4 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 56/206 (27%), Gaps = 14/206 (6%)

Query: 84  SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINS 143
            ++Q   Q        +  G   +   P   G L     S    +  T  G  LF G   
Sbjct: 421 GNLQSPSQGTTSS-SNMFGGLGASQAKPATGGNLFGGMSSTPGTSATTGTGSNLFGGTVQ 479

Query: 144 SEKPLNG---YFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200
             +   G   + +     +      L G     S + + G ++   SM      +    L
Sbjct: 480 GSQNKTGSNIFGSLSGGTQAGSSSSLFGATPSPSATTMGGNNVFSPSMTTPTSQNKFNNL 539

Query: 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN 260
             +       + + ++A+                 +  NM G          GT      
Sbjct: 540 FGQV-GTAGQSTSVNSAATTGASSTPGLGGATQSGSTSNMFG------SVSTGTNLGGVG 592

Query: 261 LTDGARNVLTKKMLSTVQQGLSGIIE 286
               ++N+       ++  G +G   
Sbjct: 593 ---DSKNIFGTSSGFSLGAGNTGTNA 615


>gi|19910973|dbj|BAB87738.1| flagellin protein FliA(H) [Clostridium haemolyticum]
          Length = 554

 Score = 37.4 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 42/148 (28%), Gaps = 9/148 (6%)

Query: 176 SLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS 235
             + G       + A+ +       +++  D   +   W + +  N   +I       + 
Sbjct: 386 GSILGSDHGHGDIKAEDVVKGTTPEKEQPLDK--FKIIWPDDNSDNTTGKI------QLQ 437

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE 295
              N      I    +  +    + L   +      + + +    +  I   R+ LG  +
Sbjct: 438 VGANEGQSITISLKDMRSSALGIEKLEVTSFES-ASQSIKSCDNAIEKISNFRSELGAYQ 496

Query: 296 KNINEERVFLQNKNNIIDTYISKSIGVE 323
             +      L      +    S+   V+
Sbjct: 497 NRLEHTINNLNTSAENLQASESRIRDVD 524


>gi|326382391|ref|ZP_08204083.1| MMPL domain-containing protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199121|gb|EGD56303.1| MMPL domain-containing protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 1026

 Score = 37.4 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 22/165 (13%)

Query: 36  GQSSDYGLQLGA----RVTSILEWEQEKNHIAERLHS-NSL-VTKRLSTSQAHLSSMQKI 89
           G+ +D+  QLG         + + +   N +   L + N   +  RLS  Q  + ++   
Sbjct: 645 GRFADFATQLGGVEGPGTADLAQLQSSLNVLDSALQTINGQDLGSRLSQLQTGVRALADG 704

Query: 90  VQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLN 149
            + + G +  L+     ++   + AG+ + + +     A   D G       N+      
Sbjct: 705 ARQLSGGVSALV-----DSNVQLLAGLSQVAAQL---RAPARDIG-------NTDSA-TG 748

Query: 150 GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
            Y   D+   + F Q+ + F+  + K+             A  MT
Sbjct: 749 FYLPADAFKDQQFSQVARQFISPDGKTARFVVQTAYDPYTADAMT 793


>gi|282911014|ref|ZP_06318816.1| large surface anchored protein [Staphylococcus aureus subsp. aureus
            WBG10049]
 gi|282324709|gb|EFB55019.1| large surface anchored protein [Staphylococcus aureus subsp. aureus
            WBG10049]
          Length = 6830

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6087 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6146

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6147 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6206

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6207 TNKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6263

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6264 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6322

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    +G+      
Sbjct: 6323 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6381

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6382 LATAKQQAKDALRQMTHLSDAQKQSITVQIDNATQVTGVQSVKDNATNLDNAMNQLRNSI 6441

Query: 343  M 343
             
Sbjct: 6442 A 6442


>gi|254559262|ref|YP_003066357.1| flagellin [Methylobacterium extorquens DM4]
 gi|254266540|emb|CAX22304.1| putative flagellin (flaA-like; flaB-like) [Methylobacterium
           extorquens DM4]
          Length = 465

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
            +      L+  A +   K +++ V++ L+ + +    LG S+  I+ ++ F+       
Sbjct: 358 ISTIDISTLSGTAGDTTLKNIITQVEKALAKVTDAGTKLGASKTQIDGQKSFIDTLMKAN 417

Query: 313 DTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           D  I   +  +      +L  L  + +++      +Q LSI N
Sbjct: 418 DRTIGTLVDADIEEESTKLKALQTQQQLA------VQTLSIAN 454


>gi|90418379|ref|ZP_01226291.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90338051|gb|EAS51702.1| flagellin protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 322

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
             L     +     M+  V + LS +    + LG S+  ++ +  F+ N  N ID  +  
Sbjct: 221 IALASTTTDAQVNAMVRVVDKILSDMTTAASNLGASKSRMDIQSEFVSNLRNSIDKGVGT 280

Query: 319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
            +  +      +L  L  + ++       +Q LSI N
Sbjct: 281 LVDADMTEESTRLKALQTQQQLG------VQALSIAN 311


>gi|300117342|ref|ZP_07055132.1| flagellar hook-associated protein FlgL [Bacillus cereus SJ1]
 gi|298725177|gb|EFI65829.1| flagellar hook-associated protein FlgL [Bacillus cereus SJ1]
          Length = 287

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 50/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ + +  +     +     +    +I + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLFMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L G     +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLTVQALNGTNSEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEKPPFTEDGT 150


>gi|242278492|ref|YP_002990621.1| flagellar hook-associated protein 3 [Desulfovibrio salexigens DSM
           2638]
 gi|242121386|gb|ACS79082.1| flagellar hook-associated protein 3 [Desulfovibrio salexigens DSM
           2638]
          Length = 524

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 45/135 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +S   +F            D V  + +  T +  +        +  IL+  +    + + 
Sbjct: 3   VSQQMLFNTYVSNMNRSLTDLVDSNIQAQTQKKVNRPSDDPVGMARILDHRETLATVKQY 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             +       LS S   L+ +  I+    G       G    +     +   R  ++  V
Sbjct: 63  RDNIDTAKGWLSLSDTTLTQVSTIITRAKGLAEQGASGTITADNREQISYEARQLFQQLV 122

Query: 126 TFANMTDEGQYLFSG 140
           + AN   EG+ +++G
Sbjct: 123 SLANTEYEGKSIYAG 137



 Score = 36.2 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 34/88 (38%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            ++ L ++      ++ + A +G  E  +      L +        IS    V+      
Sbjct: 437 VQECLESLNLSQKHVLTKAADVGGRENRLAVADQVLSSLELNEKDRISHIEDVDVGELMT 496

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           +LS      E     ++ + K+++LNY+
Sbjct: 497 KLSQQQIVYEAVLKSSSMIMKMNLLNYV 524


>gi|91225881|ref|ZP_01260850.1| flagellin [Vibrio alginolyticus 12G01]
 gi|269965416|ref|ZP_06179535.1| Flagellin A [Vibrio alginolyticus 40B]
 gi|91189531|gb|EAS75807.1| flagellin [Vibrio alginolyticus 12G01]
 gi|222820586|gb|ACM67643.1| flagellin [Vibrio alginolyticus]
 gi|269829895|gb|EEZ84125.1| Flagellin A [Vibrio alginolyticus 40B]
          Length = 384

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 52/384 (13%), Positives = 113/384 (29%), Gaps = 52/384 (13%)

Query: 10  SIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSN 69
           ++    N+      +   K  +E+ T            R++S  +    K+  A    SN
Sbjct: 2   AVTVSTNVSAMTAQRYLNKATDELNTSM---------ERLSSGHKINSAKDDAAGLQISN 52

Query: 70  SLVTKR-------------LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGM 116
            L  +              +S +Q    +M +    M     + ++     N       +
Sbjct: 53  RLTAQSRGLDVAMRNANDGISIAQTAEGAMNEATSVMQRMRDLAIQSSNGTNSPAERQAI 112

Query: 117 LRDSYESFVTFAN-----MTDEGQYL----FS------GINSSEKPL-------NGYFTK 154
             +S  + +   N      +  G+ L    F       G +S E  +             
Sbjct: 113 NEESM-ALIDELNRIAETTSFGGRRLLNGSFGEAAFQIGASSGEAMIMGLTSIRADDTRM 171

Query: 155 DSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNW 214
             +   S +   + +  + +KS L      +       + D    +  K  DD      +
Sbjct: 172 GGVTFLSENGKDKNWSVDPAKSDLKITLPGMGEDEDGNVDDLEININAKAGDDIEELATY 231

Query: 215 SNASDHNIKYRIKDTEGIDVSAN-VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKK- 272
            N     I   + +   + V     N++G   I            + +    +++     
Sbjct: 232 INGQSDMINASVSEDGKLQVFVAHPNVQGEISISGGLASELGLSDEPIRTSVQDIDMTTV 291

Query: 273 -----MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
                 +S +   L  +  QRA LG  +  ++     L N    +D   S+    +    
Sbjct: 292 QGSQNAISVLDSALKYVDSQRADLGAKQNRLSHSINNLANIQENVDASNSRIKDTDFAKE 351

Query: 328 HAQLSTLINKIEMSYMITTKLQKL 351
             Q++      +    I  + ++L
Sbjct: 352 TTQMTKAQILQQAGTSILAQAKQL 375


>gi|229149941|ref|ZP_04278169.1| Flagellar hook-associated protein 3 [Bacillus cereus m1550]
 gi|228633622|gb|EEK90223.1| Flagellar hook-associated protein 3 [Bacillus cereus m1550]
          Length = 287

 Score = 37.4 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 62

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q  L S+ +  Q  V  L     G     +       +    
Sbjct: 63  QKDIADSKNVLTQTENTLQGVLKSLTRADQLTVQAL----NGTNSEKELQAIGVEIDQIL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++   P     T
Sbjct: 119 KQVVYLANTKEQGRYIFGGDSAENLPFTEDGT 150


>gi|228914318|ref|ZP_04077933.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228945342|ref|ZP_04107697.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228814314|gb|EEM60580.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228845312|gb|EEM90348.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 287

 Score = 37.4 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 50/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ + +  +     +     +    +I + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLFMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L G     +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLTVQALNGTNSEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEKPPFTEDGT 150


>gi|85710171|ref|ZP_01041236.1| Flagellin, N-terminus [Erythrobacter sp. NAP1]
 gi|85688881|gb|EAQ28885.1| Flagellin, N-terminus [Erythrobacter sp. NAP1]
          Length = 305

 Score = 37.4 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 95/358 (26%), Gaps = 54/358 (15%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           M     ST + FER       L KD  +L  ++ TG   + G       + +    + + 
Sbjct: 1   MSFVSNSTGAFFERSLTQMGSLRKDVERLQTQIATGVRIERGSDDPVAASRLRALARLET 60

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
             A    + + + + L+ +   +  +  I+Q      V+     T        A  L   
Sbjct: 61  RGATEAENAARLEQDLAEAGNQIEGVVSILQRARELAVLAASDTTGETGRAAIADELDQM 120

Query: 121 YESFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLA 179
            +     +N  +  G  LF+G                    +                  
Sbjct: 121 SDELFARSNSLSITGAPLFAGT-------------------AGAPAFVRDANGVVTYNGN 161

Query: 180 GQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVN 239
           GQ   +      ++   +   +    D                   +        +   +
Sbjct: 162 GQSGAIPVAPGTEIERGVTGAQLFEFD-------------------VGGAPTSSFAVIAD 202

Query: 240 MRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNIN 299
                       + +          AR+ L       +   +      + V+G     + 
Sbjct: 203 --------LAIAMRSAGGDP--AQAARDALAG-----IDAAIDTANRSQTVIGTRAGWVE 247

Query: 300 EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
             +   Q +   +    S+    +      +L   +  +E S    T++  L++ N L
Sbjct: 248 AIQQDQQTRAIDVAEKRSQIADTDVADTIVRLQQALTALEASQASFTRVSSLTLFNAL 305


>gi|170742082|ref|YP_001770737.1| flagellin domain-containing protein [Methylobacterium sp. 4-46]
 gi|168196356|gb|ACA18303.1| flagellin domain protein [Methylobacterium sp. 4-46]
          Length = 494

 Score = 37.4 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 9/125 (7%)

Query: 231 GIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
            ID S              +     F    L   A +   K +++ V + L+ + +    
Sbjct: 368 IIDTSVGSYDASFGG---GSYSIANFDISKLVGTAGDSNLKDIIAAVDKALAAVTDAGTK 424

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
           LG  +  I  +  F+ +        I   +  +      +L  L  + +++      +Q 
Sbjct: 425 LGAGKNQIEGQTSFVDSLMKANTATIGTLVDADIEEESTKLKALQTQQQLA------VQA 478

Query: 351 LSILN 355
           LSI N
Sbjct: 479 LSIAN 483


>gi|163939545|ref|YP_001644429.1| flagellar hook-associated protein FlgL [Bacillus weihenstephanensis
           KBAB4]
 gi|163861742|gb|ABY42801.1| flagellar hook-associated protein 3 [Bacillus weihenstephanensis
           KBAB4]
          Length = 287

 Score = 37.4 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ----SSDYGLQLGARVTSILEWEQEKNH 61
           +ST            +LN        ++ +G+     S+  L               +  
Sbjct: 3   VSTFQNANWAKNQMMDLNVQQQYHRNQVTSGKKNLFMSEDPLAASKSFAIQHSLANIEQM 62

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
             +   S +++T+  +T Q    S+ +  Q  +  L     G     +       +    
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLTLQAL----NGTNSEKELKAIGAEIDQIL 118

Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153
           +  V  AN  ++G+Y+F G ++ + P     T
Sbjct: 119 KQVVYLANTKEQGRYIFGGDSAEQVPFTEDGT 150


>gi|229109196|ref|ZP_04238795.1| Flagellar hook-associated protein 3 [Bacillus cereus Rock1-15]
 gi|228674206|gb|EEL29451.1| Flagellar hook-associated protein 3 [Bacillus cereus Rock1-15]
          Length = 296

 Score = 37.4 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 12  VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 71

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L       +       +    +  V
Sbjct: 72  QKDLADSKNVLTQTENTLQGIFKSLTRADQLTVQALNEPNGEKELKAIGAEIDQILKQVV 131

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 132 YLANTKEQGRYIFGGDSAEKSPFTEDGT 159


>gi|299783617|gb|ADJ41615.1| Membrane protein family protein [Lactobacillus fermentum CECT 5716]
          Length = 903

 Score = 37.4 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 14/215 (6%)

Query: 3   TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQ-----------LGARVTS 51
           ++  S+ S   + +    +   D  K   +  T    D   Q           LG  ++ 
Sbjct: 388 SSAASSLSEVYQNDTAIAQSAGDLAKSTTDATTKAQLDAIAQKAQSNVTTIQGLGTALSQ 447

Query: 52  ILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFP 111
           +       + +  +L++ + +   LS +Q  L+   +++  + G    L    +      
Sbjct: 448 VNSLSTSLSGLQSQLNNLASLQTTLSGAQTTLNQANQLLTTLQGYQGALSAMPSQLAALK 507

Query: 112 INAGMLRDSYESFVTFANMTDEG--QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGF 169
                L     S  +  +    G  QY  +G++++    +      +      +Q+  G 
Sbjct: 508 QATNSLASGAASLQSGMSTAQAGINQYT-AGVDTAASGASQLSANSASLTSGANQLQSGV 566

Query: 170 LEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKF 204
            +  +    A       + N+  +     QL    
Sbjct: 567 SQYTAGVNQANAGTGQLTANSAALVSGANQLATAL 601


>gi|282895494|ref|ZP_06303631.1| ABC-transporter DevB family protein [Raphidiopsis brookii D9]
 gi|281199527|gb|EFA74390.1| ABC-transporter DevB family protein [Raphidiopsis brookii D9]
          Length = 399

 Score = 37.4 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/121 (9%), Positives = 32/121 (26%), Gaps = 7/121 (5%)

Query: 12  FERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSL 71
                 +   L  +      E    +  D         ++       ++ + ++++    
Sbjct: 162 TSAQKAIIARLQAELNNAQRE--NQRYEDLYENGAVSASNAESKRLRRDTLQQQINEAKA 219

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
              R   +Q  L       Q  +  +V +    TD      +    + S        +++
Sbjct: 220 ALNR---TQQTLQKQLNEAQSRLNSIVEIR--PTDLQVAKADLASAKASITQVQAELDLS 274

Query: 132 D 132
            
Sbjct: 275 I 275


>gi|99080881|ref|YP_613035.1| flagellin-like [Ruegeria sp. TM1040]
 gi|99037161|gb|ABF63773.1| Flagellar filament 33 kDa core protein (Class B) [Ruegeria sp.
           TM1040]
          Length = 292

 Score = 37.4 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 257 LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYI 316
           L+ NLT    +      L+ ++  L   I   A LG S   I ++  F+    + ++  +
Sbjct: 188 LASNLTAITDSTTAATALTEIEDFLQVAINGAASLGSSASRIEDQSDFVGRLVDAMEQGV 247

Query: 317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           S     +   A A+LS L  + E++      +Q L+I N
Sbjct: 248 SAMTDTDMEEASARLSALKTQQELA------IQSLTIAN 280


>gi|84570483|dbj|BAE72671.1| deduced tail fiber protein [Xanthomonas oryzae phage OP1hC]
          Length = 512

 Score = 37.4 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 63/206 (30%), Gaps = 9/206 (4%)

Query: 90  VQDMVGPLVILLEGKTD-NNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPL 148
             D       +     D  ++        + +  S  T          L S I++ +  +
Sbjct: 18  GDDARAAFSKVNSNFADVQSQITAEVSARQSAISSVQTTVATKASSSDLASEISARQSAI 77

Query: 149 NGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDE 208
           +    + ++A K+    L   +     ++ + Q    +  ++  +   I   +   S  +
Sbjct: 78  S--SVQTTVATKASSSDLASEISARQSAISSVQTTVATKASSSDLASEISARQSAISSVQ 135

Query: 209 YWANNWSNASDHNIKYRIKDTEGIDVSANVN----MRGIRDIMFVAVIGTEFLSKNLTDG 264
                 + AS  ++   I   +  D + +       + I      A +  E  ++   D 
Sbjct: 136 --TTVATKASSSDLASEISARQSADSAISATVTAQGQAINQRALSADLTAEVAARQAADV 193

Query: 265 ARNVLTKKMLSTVQQGLSGIIEQRAV 290
           A     +   + +   + G++     
Sbjct: 194 ALQTTLQAADTALGSRIDGVLSMTGR 219


>gi|116250492|ref|YP_766330.1| flagellin A [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255140|emb|CAK06214.1| flagellin, major subunit of flagellum [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|262283894|gb|ACY40756.1| FlaC [Rhizobium leguminosarum bv. viciae]
          Length = 303

 Score = 37.4 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
               L++++ GL  + +  + LG     I  +  F+   ++ ID+ + + +        +
Sbjct: 212 ISMALTSIEAGLEAMTKAASQLGSISTRIELQEGFVSALSDSIDSGVGRLVDANMEEESS 271

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 272 KLSALQTQQQLA------IQSLSIAN 291


>gi|255596414|ref|XP_002536530.1| Flagellar hook-associated protein, putative [Ricinus communis]
 gi|223519372|gb|EEF25854.1| Flagellar hook-associated protein, putative [Ricinus communis]
          Length = 194

 Score = 37.0 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 45/129 (34%), Gaps = 1/129 (0%)

Query: 229 TEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
           ++ ++V  +     +  +       ++          R  +T   +      L  I  + 
Sbjct: 67  SQTVNVDVSGLESLLNKLDTAINALSQPTVSPGDPAVRTAITD-AMDGSGTTLELIAGKI 125

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           A  G ++  ++       N +      I +   ++   A  +L+     ++ SY   +K+
Sbjct: 126 ASFGGAQNVMDTLNGNHANVSLSNQNAIFELGSLDYGQATVELNGYNTALQASYKAYSKI 185

Query: 349 QKLSILNYL 357
             LS+ N L
Sbjct: 186 SGLSLFNIL 194


>gi|241203116|ref|YP_002974212.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857006|gb|ACS54673.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 303

 Score = 37.0 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
               L++++ GL  + +  + LG     I  +  F+   ++ ID+ + + +        +
Sbjct: 212 ISMALTSIEAGLEAMTKAASQLGSISTRIELQEGFVSALSDSIDSGVGRLVDANMEEESS 271

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 272 KLSALQTQQQLA------IQSLSIAN 291


>gi|149184214|ref|ZP_01862532.1| Flagellin, N-terminus [Erythrobacter sp. SD-21]
 gi|148831534|gb|EDL49967.1| Flagellin, N-terminus [Erythrobacter sp. SD-21]
          Length = 303

 Score = 37.0 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 97/353 (27%), Gaps = 55/353 (15%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST + FER       L   +  L + + TG+  +           +    +++      
Sbjct: 4   LSTGAFFERSTRQIGTLRSQAETLQQRIGTGERLERSSDDPVAAARLRMLARQERIGDVD 63

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
             ++ L    LS +   L S+  IV  +    V        +N+       +    E+ V
Sbjct: 64  TRNSQLAEADLSLTDQALGSIADIVIRVRELAVQASSATLSDNQRSAIGTEIGSLRENLV 123

Query: 126 TFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
             +N     G  L  G  +       Y    + A+        G  +     +  GQ +E
Sbjct: 124 LLSNSRNIAGHALLGGKATGPA----YVDGGAGAQ------FVGTAQVTPLEIGEGQSVE 173

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR 244
              +   ++ +F                                          N     
Sbjct: 174 P-GLTGPEVFEF---------------------------------------TTANGPTDL 193

Query: 245 DIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304
             +   +             A        L+ +  GL  +   + V+G     I+     
Sbjct: 194 FAVLGGLAAALAAGGQTATEA----GSAALADLDAGLEKVTTAQTVVGARLNWIDLMAER 249

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +     +    +   G +     ++L   +  +E S     +L  LS+ + L
Sbjct: 250 REITAERMAEERADVGGADIAATMSRLQETLTILEASQASFVRLANLSLFSML 302


>gi|229069291|ref|ZP_04202581.1| Flagellar hook-associated protein 3 [Bacillus cereus F65185]
 gi|228713778|gb|EEL65663.1| Flagellar hook-associated protein 3 [Bacillus cereus F65185]
          Length = 296

 Score = 37.0 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 12  VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 71

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L       +       +    +  V
Sbjct: 72  QKDLADSKNVLTQTENTLQGIFKSLTRADQLTVQALNEPNGEKELKAIGAEIDQILKQVV 131

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 132 YLANTKEQGRYIFGGDSAEKSPFTEDGT 159


>gi|327191211|gb|EGE58254.1| putative flagellin protein [Rhizobium etli CNPAF512]
          Length = 321

 Score = 37.0 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 110/352 (31%), Gaps = 54/352 (15%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + +N         + +G   +      A  +       +   ++
Sbjct: 12  TSILTNNAAMAALQTLRGVNDSLKDTQGRVSSGYRVEKAADNAAYWSIATTMRSDNLALS 71

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+ A + S   +V ++   +V   E   D  K       L++   S
Sbjct: 72  AVSDALGLGAAKVDTAYAAMDSALDVVSEIKAKIVAATEKGVDKTKIQQELDQLQEQLLS 131

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N        +    S  K      +                 
Sbjct: 132 IAQSAS--------FSGEN--------WVAGASGTKSVVSSFV----------------R 159

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           + S+  + +MTD++                  + +  N+ + +  T  I+ S+ +     
Sbjct: 160 DGSNAVSVKMTDYVLD----------------SGTLGNVLFGMTSTGAIETSSGIIGTAF 203

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                  VI    +      G         LS ++  L  +    + LG     I  +  
Sbjct: 204 NGTYGGTVIVMPSIYDLDITGFTQGQLDAALSGIELVLGAMTAAGSALGSISTRIQLQEN 263

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+    + ID+ I + +  +     ++LS L  + ++       +Q LSI N
Sbjct: 264 FVSGLRDSIDSGIGRLVDADMEEESSKLSALQTQQQLG------IQSLSIAN 309


>gi|290986785|ref|XP_002676104.1| predicted protein [Naegleria gruberi]
 gi|284089704|gb|EFC43360.1| predicted protein [Naegleria gruberi]
          Length = 1029

 Score = 37.0 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 244 RDIMFVAVI-GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
           RD+   A +  +  +++ ++           +  +++    I   +A L  +   +  + 
Sbjct: 363 RDLEQNAQLRASTLVNQGISPSDIYTKHAATVEVLKEKKEEIKNLQASLETANHTVKNQE 422

Query: 303 VFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353
              + K  ++ T     I  ++     ++  L  ++E+S+   ++++ L+I
Sbjct: 423 TETERKVGLLTTQNEDLIK-QKDEIEQRVKDLERQLEISF---SRVETLNI 469


>gi|116253011|ref|YP_768849.1| flagellin protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257659|emb|CAK08756.1| Probable flagellin. Unrelated to other flagellins in 3841, function
           unknown [Rhizobium leguminosarum bv. viciae 3841]
 gi|262283899|gb|ACY40759.1| FlaH [Rhizobium leguminosarum bv. viciae]
          Length = 337

 Score = 37.0 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 95/321 (29%), Gaps = 27/321 (8%)

Query: 13  ERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLV 72
           +    + +++N++       + TG   +         +       +   ++    +  + 
Sbjct: 15  DAALYVLRDINRNMTVTQNHITTGMRVEKASDNAVYWSIATTARTDNKAVSAIQDALGMA 74

Query: 73  TKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD 132
              + T+   + S+  +V ++   LV   E   D NK       L++   S    A    
Sbjct: 75  AATMGTAYTGVQSVIDVVSEIKAKLVAATEDGIDKNKINEEIKQLQEQLRSVSESATFNS 134

Query: 133 EGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQ 192
           +   + +   +  +P     +    A  +    +  +  +N+             ++ + 
Sbjct: 135 DNWVVLTNDATPTQPRQIPASFIRNADGTISIGMLSYHIDNTPVGATTSKDARYLIDDRA 194

Query: 193 MTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI 252
                  +        Y+A     A ++ +      T    V  +               
Sbjct: 195 TGSGEYGVL----TSAYFATELGAAQNYVLMTSKNGTTTGQVVIS--------------- 235

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
                   +T         +M+S V   L+ +    +  G  EK IN +  F    ++ I
Sbjct: 236 --------VTSSTTQGQIGQMISVVDAALTQLTTVGSAFGALEKRINLQNDFATKLHDNI 287

Query: 313 DTYISKSIGVEQHTAHAQLST 333
              I + +  +     ++L  
Sbjct: 288 TAGIGRLVDADMEEESSRLRA 308


>gi|282905783|ref|ZP_06313638.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus subsp. aureus Btn1260]
 gi|282331075|gb|EFB60589.1| cell wall associated fibronectin-binding protein [Staphylococcus
            aureus subsp. aureus Btn1260]
          Length = 8193

 Score = 37.0 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 6332 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 6391

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 6392 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 6451

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 6452 TNKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 6508

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 6509 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 6567

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    +G+      
Sbjct: 6568 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 6626

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 6627 LATAKQQAKDALRQMTHLSDAQKQSITVQIDNATQVTGVQSVKDNATNLDNAMNQLRNSI 6686

Query: 343  M 343
             
Sbjct: 6687 A 6687


>gi|52143718|ref|YP_083110.1| flagellar hook-associated protein FlgL [Bacillus cereus E33L]
 gi|51977187|gb|AAU18737.1| flagellar hook-associated protein 3 [Bacillus cereus E33L]
          Length = 287

 Score = 37.0 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 50/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ + +  +     +     +    +I + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLFMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L G     +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLTVQALNGTNSEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEKPPFTEDGT 150


>gi|238782799|ref|ZP_04626828.1| Flagellin and hook-associated protein [Yersinia bercovieri ATCC
           43970]
 gi|238716222|gb|EEQ08205.1| Flagellin and hook-associated protein [Yersinia bercovieri ATCC
           43970]
          Length = 278

 Score = 37.0 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 39/316 (12%), Positives = 100/316 (31%), Gaps = 62/316 (19%)

Query: 47  ARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKI-VQDMVGPLVILLEGKT 105
           A  +  + ++   ++I +   +       L      LSS+  I  +++   ++       
Sbjct: 17  AGASQAIIYQNALSNINQFDTARLYAQDALEQEDNVLSSVGNILTKNLSEKIIAAGNDTH 76

Query: 106 DNNKFPINAGMLRDSYESFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQ 164
            +      A  L+   ++ +  AN     G+++F+G  +  +P      +   +    D 
Sbjct: 77  SDADRAALATELQGIRDNLLDLANSKNSNGRFIFAGFKTGSEPF-----QKDGSYVGGDT 131

Query: 165 MLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKY 224
                + ++++  +     +V          F+    D                      
Sbjct: 132 PPTQIVADSTEMQVGHIGSDV----------FMTGTSDDIFA------------------ 163

Query: 225 RIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGI 284
                  +D +       I D                   A + +       V+ G+  +
Sbjct: 164 ------ALDSAIAALNTPIVDDA--------------DREALHQVLDSANIAVKNGIDNL 203

Query: 285 IEQRAVLGISEKNIN-----EERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIE 339
            + +A +G + + I+          +  ++ + +T  S    +    A +++S     + 
Sbjct: 204 GKIQAQVGTNLQQIDSLALNSATQKINIESRLQETVGSDYDSIITLIAQSKMSDF--ALS 261

Query: 340 MSYMITTKLQKLSILN 355
            S M+   +QK+SI N
Sbjct: 262 SSMMVFQSMQKMSIFN 277


>gi|222056391|ref|YP_002538753.1| Cna B domain protein [Geobacter sp. FRC-32]
 gi|221565680|gb|ACM21652.1| Cna B domain protein [Geobacter sp. FRC-32]
          Length = 1946

 Score = 37.0 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 70/243 (28%), Gaps = 8/243 (3%)

Query: 59   KNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLR 118
               +   L   +  T  +  +   L ++  +   +     ++    T+       AG+  
Sbjct: 1036 SQQLEVTLTGYASGTAAVEVAAGALLNLGDLPLSLNPTSAVIKGTITNAADGQALAGVTV 1095

Query: 119  DSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL 178
                SF   A    +G YLF  +      +         A  S      G L    + +L
Sbjct: 1096 AVTGSFNGTAITGADGTYLFPEVTPGSVTVTASKAGYFQATGSGSISAGGLLLFTPQLVL 1155

Query: 179  AGQHLEVSSMNA----QQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEG-ID 233
                 +  ++          + +  +     +D       ++A+   +   I   +  +D
Sbjct: 1156 IPPQPDTGTITGRVVDATTKEALSGVVLTLQNDSA-VRTVTDATGSFLLSNIPVGDQAVD 1214

Query: 234  VSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLS--TVQQGLSGIIEQRAVL 291
             S       +  I   A    +  +  L+      + K  +S     + + G        
Sbjct: 1215 FSLPGYSAAVAKITSTAGFSLDLGTLPLSSNPTTGVLKVTVSDAATGKAIEGATITVDGA 1274

Query: 292  GIS 294
            G++
Sbjct: 1275 GLT 1277


>gi|238922535|ref|YP_002936048.1| flagellar hook-associated protein FlgL [Eubacterium rectale ATCC
           33656]
 gi|238874207|gb|ACR73914.1| flagellar hook-associated protein FlgL [Eubacterium rectale ATCC
           33656]
          Length = 510

 Score = 37.0 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 59/191 (30%), Gaps = 2/191 (1%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           I+ + I                K + +M T +      +        L      +H+ + 
Sbjct: 3   ITNNMIMGNTKTNINSTKVLVDKYNTQMTTQKKISKASEDPVIAIRSLRLSTSLSHLDQY 62

Query: 66  LHSN-SLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESF 124
             +N    +  +  ++  LS+M+ ++ D+    V         +        L    E  
Sbjct: 63  KDNNIPDASSWMDVTETALSNMKSLLTDIRTQCVNGSTDTLTADDRNTILQQLTALSEQV 122

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
            T  N    G+ +F+G  +S K L       S  + + +       E+   +        
Sbjct: 123 YTEGNADYAGRTVFTGYRTSSK-LTFQKDTKSTYQITQEFSAADLSEKRYYTNGVTVPNS 181

Query: 185 VSSMNAQQMTD 195
           +++      TD
Sbjct: 182 INAATPDCATD 192


>gi|126178190|ref|YP_001046155.1| methyl-accepting chemotaxis sensory transducer [Methanoculleus
           marisnigri JR1]
 gi|125860984|gb|ABN56173.1| methyl-accepting chemotaxis sensory transducer [Methanoculleus
           marisnigri JR1]
          Length = 793

 Score = 37.0 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 7/153 (4%)

Query: 186 SSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRD 245
           +S+ A +  +F K      ++    A     A+ +         +G+  +A    +GIR 
Sbjct: 644 ASIEAAKAGEFGKGFAVVANEIHNLAEQSKKATSNIRAILTDIQQGVSSTAASTEQGIRS 703

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVL-GISEKNINEERVF 304
           +   A + +             VL + +  T Q+ +      +    GI + +   E + 
Sbjct: 704 VTDAAQLTSN------AQEVIEVLAQSIADTSQEVIEIATSIQTQASGIDQISRAMENIR 757

Query: 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINK 337
              + N+  T+ ++    + H   A+L  +  +
Sbjct: 758 DAAQKNLETTHKAEKTAEDLHELGARLKRITQQ 790


>gi|148979884|ref|ZP_01815762.1| flagellin [Vibrionales bacterium SWAT-3]
 gi|145961576|gb|EDK26877.1| flagellin [Vibrionales bacterium SWAT-3]
          Length = 377

 Score = 37.0 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 88/302 (29%), Gaps = 33/302 (10%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN------ 129
           +S  Q    +M +    M     + L+    +N         R + +  +T  N      
Sbjct: 72  ISIMQTAEGAMNETTNIMQRMRDLSLQASNGSNS-----QSERTAIQEEITALNDELNRI 126

Query: 130 ---MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVS 186
               +  G+ L +G N          +     +     M    +     S +A      S
Sbjct: 127 AETTSFGGKKLLNG-NFGSTSFQIGGSSGEAVQIGLKSMRTDDINMGGFSYVANGMASDS 185

Query: 187 SMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDI 246
                   D      D+F   +    N     D        + +   VSA+VN  G   I
Sbjct: 186 WAVKSNQNDMTMSFTDRFGQPQEITINAKVGDDIEELATYINGQTDLVSASVNDDGQLQI 245

Query: 247 MFV--------AVIGTEFLSKNLTDGARNVLTK----------KMLSTVQQGLSGIIEQR 288
                      +  G+     +++ G    +            + +S +   +  +   R
Sbjct: 246 YMSGEDTSGTISFSGSLASELSMSAGYYESVNDINVTDVGGAQRAVSILDTAMKYVDSHR 305

Query: 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
           + LG  +   +     L+N +  + T  S+    +      Q+       ++S  I  + 
Sbjct: 306 SELGAMQNRFDHAINNLENVHENLATSNSRIKDTDYAKETTQMLKQQILQQVSTTILAQA 365

Query: 349 QK 350
           ++
Sbjct: 366 KQ 367


>gi|90411238|ref|ZP_01219250.1| hypothetical molybdenum ABC transporter, periplasmic
           molybdenum-binding protein [Photobacterium profundum
           3TCK]
 gi|90327767|gb|EAS44098.1| hypothetical molybdenum ABC transporter, periplasmic
           molybdenum-binding protein [Photobacterium profundum
           3TCK]
          Length = 259

 Score = 37.0 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 40/107 (37%)

Query: 158 AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNA 217
             K    ++  F    S         +V+   A  +T+ + ++ D + D+       S A
Sbjct: 3   VSKKLSVLVVSFAAAFSSITPVYAAEKVTIFAASSLTNAMNEIADIYQDETGVKTAMSFA 62

Query: 218 SDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDG 264
           S   +  +I      D+  + N + +  +    VI  +F  + LT+ 
Sbjct: 63  SSSTLARQIAQGAPADIYLSANNKWMDYVFEQGVIDADFRHQLLTNS 109


>gi|295129650|ref|YP_003580313.1| Osmosensitive K+ channel histidine kinase KdpD [Propionibacterium
           acnes SK137]
 gi|291376722|gb|ADE00577.1| Osmosensitive K+ channel histidine kinase KdpD [Propionibacterium
           acnes SK137]
          Length = 830

 Score = 37.0 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 72/268 (26%), Gaps = 38/268 (14%)

Query: 99  ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSL- 157
            L           +   ++  ++ S +          Y F       KP       + L 
Sbjct: 405 ALTTDVLAYELLAVVVALVGGAFSSLIAALASGFALDYFF------TKPFYTVTVNEPLH 458

Query: 158 -------------AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN---AQQMTDFIKQLE 201
                             D+  +        +  +G    V+ +       +   + +  
Sbjct: 459 LVALLLYLLTAALVSVVVDRAARKTRVARRAAAESGLLQSVAGLVLRGEDAVESLLSRAT 518

Query: 202 DKF-------SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM--FVAVI 252
           + F         D     NW   SD   ++RI D   ++          R +M    A +
Sbjct: 519 EAFGLSGARLMTDGKVVANWGTTSDQVTEHRIDDHTVVEFHGPEPDASERRLMSVIAAQL 578

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
           GT      L + A+ V        V+  L  +      L             L+++ + +
Sbjct: 579 GTALEQHQLEETAKAVEPLAATDRVRTAL--LSAVGHDLRRPLAAATAAVSGLRSEWSKL 636

Query: 313 DTY--ISKSIGVEQHTAHAQLSTLINKI 338
                       +   A +QL+ L+  +
Sbjct: 637 SDQDRADLLETAD--EALSQLANLVTDL 662


>gi|159472378|ref|XP_001694328.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276991|gb|EDP02761.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 823

 Score = 37.0 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 54/149 (36%), Gaps = 11/149 (7%)

Query: 211 ANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLT-------- 262
           A++ S A+       ++    I  + + ++    +     +   +FLS+ +         
Sbjct: 259 ADSSSGANVQLADELLRAHRTIQEAVSTSLDVATNPAVAYMQNADFLSRLMREWAVGDKA 318

Query: 263 --DGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320
             D A        ++ V +  + +      LG++++ + E +  +  +  + +  + +  
Sbjct: 319 ALDAAIEASVSAAVALVNEAGARLQTHARDLGVAQQQLAEAQDAV-AQLRLTNGLLQQEA 377

Query: 321 GVEQHTAHAQLSTLINKIEMSYMITTKLQ 349
                    +   L ++++ +     +LQ
Sbjct: 378 DTRLAEVRGESEALRSQLDSARDQVARLQ 406


>gi|218461115|ref|ZP_03501206.1| flagellin C protein [Rhizobium etli Kim 5]
          Length = 215

 Score = 37.0 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%)

Query: 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISK 318
            +L+         +M+S V   L+ +    +  G  EK I  +  F    ++ I   I +
Sbjct: 112 ISLSAATTQGQIGEMISVVDAALTQLTTVGSAFGALEKRIELQNDFAAKLHDNITAGIGR 171

Query: 319 SIGVEQHTAHAQLST 333
            +  +     ++L  
Sbjct: 172 LVDADMEEEASKLKA 186


>gi|323700158|ref|ZP_08112070.1| flagellin domain protein [Desulfovibrio sp. ND132]
 gi|323460090|gb|EGB15955.1| flagellin domain protein [Desulfovibrio desulfuricans ND132]
          Length = 308

 Score = 37.0 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/85 (11%), Positives = 27/85 (31%)

Query: 267 NVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
             L +  +  + Q +    + RA LG  +  +      L+ +   +    S+   V+   
Sbjct: 214 QALAQAAMEAINQAIISKDKIRANLGSMQNRLENTITNLEIQAENLQAAESRISDVDVAQ 273

Query: 327 AHAQLSTLINKIEMSYMITTKLQKL 351
              +        + +  +  +   L
Sbjct: 274 EMTEFVRNQILTQSAVAMLAQANSL 298


>gi|171741550|ref|ZP_02917357.1| hypothetical protein BIFDEN_00636 [Bifidobacterium dentium ATCC
           27678]
 gi|283455120|ref|YP_003359684.1| phage-infection protein-like hypothetical membrane-spanning protein
           [Bifidobacterium dentium Bd1]
 gi|171277164|gb|EDT44825.1| hypothetical protein BIFDEN_00636 [Bifidobacterium dentium ATCC
           27678]
 gi|283101754|gb|ADB08860.1| phage-infection protein-like hypothetical membrane-spanning protein
           [Bifidobacterium dentium Bd1]
          Length = 880

 Score = 37.0 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 91/285 (31%), Gaps = 45/285 (15%)

Query: 76  LSTSQAHLSSMQKIVQDMVGPLVILLEGKTD--------NNKFPINAGMLRDSYESFVTF 127
           +  ++A L+ +Q         L       TD        ++    +            T 
Sbjct: 227 IQAARAALNDVQTAAASAGKGLSGTANLITDTQTRINTFSSTASASLDQGSALLSQLSTQ 286

Query: 128 ANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSS 187
            N +         + S     NGY    S         +Q    +N+K L + Q +++S+
Sbjct: 287 TNTSVNT------VTSGLAAANGY--AGSAIGT-----MQKVNSDNAKVLDSLQKIDISN 333

Query: 188 MNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM 247
           ++ +    + + + D  S +   AN  ++ +  N   +        +S   N        
Sbjct: 334 VSPELNKQYQQIISDLQSRNRQSANTLNDLNQLNTDTKNTVAGTTKLSNQFN-------- 385

Query: 248 FVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN 307
                 +   + N    ARN +    L  +  GLS +      L  +   +  +    Q 
Sbjct: 386 -----TSAQSTLNSATDARNAINSSALPQLNSGLSSLAATAGTLSGT---VTSQNFLTQQ 437

Query: 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLS 352
            ++++D        V      + L     +++    I  KL +LS
Sbjct: 438 TSSVLDQ----LERV-SADTRSMLKDTDEQLQT---IENKLGQLS 474


>gi|291520247|emb|CBK75468.1| Flagellin and related hook-associated proteins [Butyrivibrio
           fibrisolvens 16/4]
          Length = 535

 Score = 37.0 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 1/115 (0%)

Query: 220 HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQ 279
             I + + D   + +    N      +   +V  TEF+  +  D  R    +  +  ++ 
Sbjct: 396 GEITFNVTDIGSMALQVGANEGQSMKVRIASV-STEFMYIDDVDVTRAQGPEDAMDALES 454

Query: 280 GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTL 334
            L  +   R+ LG  E  +      L      + + IS+    +  T   + + L
Sbjct: 455 ALGYVTTVRSQLGAYENRLEHTTKSLDATEENMTSAISRVEDADMATTMVEYTKL 509


>gi|256830169|ref|YP_003158897.1| flagellar hook-associated protein 3 [Desulfomicrobium baculatum DSM
           4028]
 gi|256579345|gb|ACU90481.1| flagellar hook-associated protein 3 [Desulfomicrobium baculatum DSM
           4028]
          Length = 594

 Score = 37.0 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%)

Query: 272 KMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQL 331
           + L  ++ G      Q A +G  E  ++     L          +S     +  T   +L
Sbjct: 509 EALDGLKTGHQYFTTQLASVGARENRLDVADTVLSGLKLNETERMSNVEDADLATLLTEL 568

Query: 332 STLINKIEMSYMITTKLQKLSILNYL 357
           +      E     ++ + K+S++NYL
Sbjct: 569 ANQQLSYEAVLKSSSMIMKMSLVNYL 594


>gi|313650463|gb|EFS14870.1| flagellar hook-associated protein 3 [Shigella flexneri 2a str.
           2457T]
 gi|332759625|gb|EGJ89930.1| flagellar hook-associated protein 3 [Shigella flexneri 2747-71]
 gi|332761431|gb|EGJ91715.1| flagellar hook-associated protein 3 [Shigella flexneri K-671]
 gi|332767693|gb|EGJ97886.1| flagellar hook-associated protein FlgL [Shigella flexneri 2930-71]
 gi|333019322|gb|EGK38605.1| flagellar hook-associated protein 3 [Shigella flexneri K-304]
          Length = 183

 Score = 37.0 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 6/132 (4%)

Query: 226 IKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL---- 281
           I      +   + +   +     +        +      A   +    L    +GL    
Sbjct: 49  ITSNAVAEPDGSASETNL--FAMLDSAIAALKTPVADSEADKEIAAAALDKTNRGLKNSL 106

Query: 282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS 341
           + ++  RA LG     +        ++       +S  + V+ +   +        ++ S
Sbjct: 107 NNVLTVRAELGTQLNKLESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQAS 166

Query: 342 YMITTKLQKLSI 353
           Y   T +Q LS+
Sbjct: 167 YKAFTDMQGLSL 178


>gi|313771209|gb|EFS37175.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL074PA1]
 gi|313811898|gb|EFS49612.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL083PA1]
 gi|313832089|gb|EFS69803.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL007PA1]
 gi|313832893|gb|EFS70607.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL056PA1]
 gi|313839753|gb|EFS77467.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL086PA1]
 gi|314975327|gb|EFT19422.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL053PA1]
 gi|314977743|gb|EFT21838.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL045PA1]
 gi|314985282|gb|EFT29374.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL005PA1]
 gi|327332627|gb|EGE74362.1| sensor histidine kinase KdpD [Propionibacterium acnes HL096PA2]
 gi|327446590|gb|EGE93244.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL043PA2]
 gi|327448968|gb|EGE95622.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL043PA1]
 gi|328759712|gb|EGF73309.1| sensor histidine kinase KdpD [Propionibacterium acnes HL099PA1]
          Length = 822

 Score = 37.0 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 72/268 (26%), Gaps = 38/268 (14%)

Query: 99  ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSL- 157
            L           +   ++  ++ S +          Y F       KP       + L 
Sbjct: 397 ALTTDVLAYELLAVVVALVGGAFSSLIAALASGFALDYFF------TKPFYTVTVNEPLH 450

Query: 158 -------------AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN---AQQMTDFIKQLE 201
                             D+  +        +  +G    V+ +       +   + +  
Sbjct: 451 LVALLLYLLTAALVSVVVDRAARKTRVARRAAAESGLLQSVAGLVLRGEDAVESLLSRAT 510

Query: 202 DKF-------SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM--FVAVI 252
           + F         D     NW   SD   ++RI D   ++          R +M    A +
Sbjct: 511 EAFGLSGARLMTDGKVVANWGTTSDQVTEHRIDDHTVVEFHGPEPDASERRLMSVIAAQL 570

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
           GT      L + A+ V        V+  L  +      L             L+++ + +
Sbjct: 571 GTALEQHQLEETAKAVEPLAATDRVRTAL--LSAVGHDLRRPLAAATAAVSGLRSEWSKL 628

Query: 313 DTY--ISKSIGVEQHTAHAQLSTLINKI 338
                       +   A +QL+ L+  +
Sbjct: 629 SDQDRADLLETAD--EALSQLANLVTDL 654


>gi|115660760|ref|XP_791258.2| PREDICTED: similar to RecA homolog Dmc1 [Strongylocentrotus
           purpuratus]
 gi|115971203|ref|XP_001184102.1| PREDICTED: similar to RecA homolog Dmc1 [Strongylocentrotus
           purpuratus]
          Length = 1259

 Score = 37.0 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 99/294 (33%), Gaps = 31/294 (10%)

Query: 54  EWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPIN 113
           E     N +      NS++  RLS  Q  L+ ++K    +   +  L   +T   +   +
Sbjct: 592 ELRTAVNQLMS-TDINSILE-RLSQLQTRLNGLEKDSSQLQLNVNTLQSSRTVVQQGDTD 649

Query: 114 AGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEEN 173
           A +   + +      N     Q  F+ + +    +    T+    K S  Q  Q     +
Sbjct: 650 AAVNTGAIDVLQANLN-KLGSQ--FASLQTDIASIQLKVTE---LKTSVSQTTQTVDIHS 703

Query: 174 SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
           +K L   + +         +   +       S+ +  +++  +  D N+     D   + 
Sbjct: 704 AKLLALSRSISA-------LEKSLNGSVVMLSEADGTSHSLISIRDMNVLKEEMDAVHVA 756

Query: 234 VSANVNMRGIRDIMFVAVIGTEFL-----SKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288
           +S   N         + ++ +E        ++L      V  +  L+++   +  + + +
Sbjct: 757 ISKLQNELAGETASGITIVNSEINLLSSKLEHLEGRLDEVKLEASLASLDDAIRDVTQGQ 816

Query: 289 AVLGISEKNINEERVFLQNKNNIIDT---YISKSIGVEQHTAHAQLSTLINKIE 339
           A L  +   +      ++ + +  +     +S            +L+ L + I+
Sbjct: 817 AGLQDNVVRLQFNTDLIKKQTSRANGDTIQLSVLE--------TRLNDLASSIQ 862


>gi|315097032|gb|EFT69008.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL038PA1]
          Length = 822

 Score = 36.6 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 72/268 (26%), Gaps = 38/268 (14%)

Query: 99  ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSL- 157
            L           +   ++  ++ S +          Y F       KP       + L 
Sbjct: 397 ALTTDVLAYELLAVVVALVGGAFSSLIAALASGFALDYFF------TKPFYTVTVNEPLH 450

Query: 158 -------------AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN---AQQMTDFIKQLE 201
                             D+  +        +  +G    V+ +       +   + +  
Sbjct: 451 LVALLLYLLTAALVSVVVDRAARKTRVARRAAAESGLLQSVAGLVLRGEDAVESLLSRAT 510

Query: 202 DKF-------SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM--FVAVI 252
           + F         D     NW   SD   ++RI D   ++          R +M    A +
Sbjct: 511 EAFGLSGARLMTDGKVVANWGTTSDQVTEHRIDDHTVVEFHGPEPDASERRLMSVIAAQL 570

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
           GT      L + A+ V        V+  L  +      L             L+++ + +
Sbjct: 571 GTALEQHQLEETAKAVEPLAATDRVRTAL--LSAVGHDLRRPLAAATAAVSGLRSEWSKL 628

Query: 313 DTY--ISKSIGVEQHTAHAQLSTLINKI 338
                       +   A +QL+ L+  +
Sbjct: 629 SDQDRADLLETAD--EALSQLANLVTDL 654


>gi|158424323|ref|YP_001525615.1| flagellin [Azorhizobium caulinodans ORS 571]
 gi|158331212|dbj|BAF88697.1| flagellin [Azorhizobium caulinodans ORS 571]
          Length = 353

 Score = 36.6 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 94/352 (26%), Gaps = 11/352 (3%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + +N      ++ + TG+  +      A          +   + 
Sbjct: 2   TSIITNNAASVALATLRSINDSLNTTNDRVSTGKKINSAADGAAYWNISTTLTSDNGALG 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               + +L    + T+   L+ +   +  +   LV       D      N         S
Sbjct: 62  AVKDAINLDMSSVKTTNTGLTQIMNSLNTIKQALVSAQSSTADRTSLQKNIANAVSDISS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
             + A +            +            S A                    A  + 
Sbjct: 122 AASSAVVNGANWLSVDSSATGFNANKSLLANFSRASGVVTVGTTTLDTGAFAVYDAKTNG 181

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
             +  ++      I       +            +      ++K       S +  + G 
Sbjct: 182 TATGTSST-----IDTAVTAVATSASSGTGALTVAVGTGAGQLKGFMDTTYSISGTVNGT 236

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
               F A I    +S   +           +  V   + G+      LG ++  +  ++ 
Sbjct: 237 TVAAFTASIANIDISSLTSSDVDLAKLSSYMKIVSATIDGLQAGSTALGTTQTRLTSQQN 296

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F Q+  +I  + I   +         +L  L  + +++      +Q LSI N
Sbjct: 297 FAQSLIDINTSSIGSLVDANMEEESTKLKALQTQQQLA------VQSLSIAN 342


>gi|183983858|ref|YP_001852149.1| bacteriophage membrane protein [Mycobacterium marinum M]
 gi|183177184|gb|ACC42294.1| conserved hypothetical bacteriophage membrane protein
           [Mycobacterium marinum M]
          Length = 1193

 Score = 36.6 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/204 (9%), Positives = 49/204 (24%), Gaps = 19/204 (9%)

Query: 42  GLQLGARVTSILEWEQEKNHIAERLHSN--SLVTKRLSTSQAHLSSMQKIVQDMVGPLVI 99
           GL L A              ++    +N  SLV+   + S   + ++  +   +   L +
Sbjct: 516 GLSLAAEAADNFT-----ALLSGLSLANITSLVSFLDTASSNAVDAIGALGDLVANALQV 570

Query: 100 LLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAK 159
                 D          L           N +         +N+  + +  ++       
Sbjct: 571 ------DAAGVGTLIASLLTMLTQISDIFNGSVVTP-----VNTVVQQIKDWWAATGENI 619

Query: 160 KSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASD 219
            +    +   +    ++L +     + +  A         +    +    W   W  A  
Sbjct: 620 PNAISDVGTIISSAGQTLASAVGTAIQNAGAALDDVKNNVIGGATNAVTVWGQAWEGAFA 679

Query: 220 HNIKYRIKDTEGIDVSANVNMRGI 243
                 I                +
Sbjct: 680 GFFNS-ISGASVAAAQTGQVSSAM 702


>gi|206970882|ref|ZP_03231834.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           AH1134]
 gi|229078921|ref|ZP_04211473.1| Flagellar hook-associated protein 3 [Bacillus cereus Rock4-2]
 gi|229178148|ref|ZP_04305519.1| Flagellar hook-associated protein 3 [Bacillus cereus 172560W]
 gi|206734518|gb|EDZ51688.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           AH1134]
 gi|228605278|gb|EEK62728.1| Flagellar hook-associated protein 3 [Bacillus cereus 172560W]
 gi|228704335|gb|EEL56769.1| Flagellar hook-associated protein 3 [Bacillus cereus Rock4-2]
          Length = 287

 Score = 36.6 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L       +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGIFKSLTRADQLTVQALNEPNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEKSPFTEDGT 150


>gi|327444731|gb|EGE91385.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL013PA2]
          Length = 822

 Score = 36.6 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 72/268 (26%), Gaps = 38/268 (14%)

Query: 99  ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSL- 157
            L           +   ++  ++ S +          Y F       KP       + L 
Sbjct: 397 ALTTDVLAYELLAVVVALVGGAFSSLIAALASGFALDYFF------TKPFYTVTVNEPLH 450

Query: 158 -------------AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN---AQQMTDFIKQLE 201
                             D+  +        +  +G    V+ +       +   + +  
Sbjct: 451 LVALLLYLLTAALVSVVVDRAARKTRVARRAAAESGLLQSVAGLVLRGEDAVESLLSRAT 510

Query: 202 DKF-------SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM--FVAVI 252
           + F         D     NW   SD   ++RI D   ++          R +M    A +
Sbjct: 511 EAFGLSGARLMTDGKVVANWGTTSDQATEHRIDDHTVVEFHGPEPDASERRLMSVIAAQL 570

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
           GT      L + A+ V        V+  L  +      L             L+++ + +
Sbjct: 571 GTALEQHQLEETAKAVEPLAATDRVRTAL--LSAVGHDLRRPLAAATAAVSGLRSEWSKL 628

Query: 313 DTY--ISKSIGVEQHTAHAQLSTLINKI 338
                       +   A +QL+ L+  +
Sbjct: 629 SDQDRADLLETAD--EALSQLANLVTDL 654


>gi|217031519|ref|ZP_03437024.1| hypothetical protein HPB128_21g77 [Helicobacter pylori B128]
 gi|216946719|gb|EEC25315.1| hypothetical protein HPB128_21g77 [Helicobacter pylori B128]
          Length = 689

 Score = 36.6 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 257 LSKNLTDGARNVLTKKMLST---VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIID 313
           L    +   RN+  +  ++    +   +  +I +    G + +NI      L+ +   I 
Sbjct: 589 LGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIR 648

Query: 314 TYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               ++ G +    + + S L N        T K+  LS+  YL
Sbjct: 649 G---ETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL 689


>gi|170761749|ref|YP_001788046.1| flagellin [Clostridium botulinum A3 str. Loch Maree]
 gi|169408738|gb|ACA57149.1| flagellin [Clostridium botulinum A3 str. Loch Maree]
          Length = 279

 Score = 36.6 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN----LTDGARNVLTKKMLSTVQQGLS 282
              + +      N      +   A+        +    +    +     KM+ T+ + ++
Sbjct: 142 GAGKELTFQIGANSGQTIQLAISAMSVGALGVASDKVTIGSAKKASEITKMIETIDKAIN 201

Query: 283 GIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
            +  +RA LG ++  +      L N    +    S+   V+
Sbjct: 202 TVSGERAKLGANQNRLEHTIANLDNSAENLQAAESRIRDVD 242


>gi|50841609|ref|YP_054836.1| two-component sensor, KdpD [Propionibacterium acnes KPA171202]
 gi|50839211|gb|AAT81878.1| two-component sensor, KdpD [Propionibacterium acnes KPA171202]
 gi|332674520|gb|AEE71336.1| sensor protein KdpD [Propionibacterium acnes 266]
          Length = 830

 Score = 36.6 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 72/268 (26%), Gaps = 38/268 (14%)

Query: 99  ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSL- 157
            L           +   ++  ++ S +          Y F       KP       + L 
Sbjct: 405 ALTTDVLAYELLAVVVALVGGAFSSLIAALASGFALDYFF------TKPFYTVTVNEPLH 458

Query: 158 -------------AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN---AQQMTDFIKQLE 201
                             D+  +        +  +G    V+ +       +   + +  
Sbjct: 459 LVALLLYLLTAALVSVVVDRAARKTRVARRAAAESGLLQSVAGLVLRGEDAVESLLSRAT 518

Query: 202 DKF-------SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM--FVAVI 252
           + F         D     NW   SD   ++RI D   ++          R +M    A +
Sbjct: 519 EAFGLSGARLMTDGKVVANWGTTSDQVTEHRIDDHTVVEFHGPEPDASERRLMSVIAAQL 578

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
           GT      L + A+ V        V+  L  +      L             L+++ + +
Sbjct: 579 GTALEQHQLEETAKAVEPLAATDRVRTAL--LSAVGHDLRRPLAAATAAVSGLRSEWSKL 636

Query: 313 DTY--ISKSIGVEQHTAHAQLSTLINKI 338
                       +   A +QL+ L+  +
Sbjct: 637 SDQDRADLLETAD--EALSQLANLVTDL 662


>gi|282919146|ref|ZP_06326881.1| hypothetical protein SASG_00452 [Staphylococcus aureus subsp. aureus
            C427]
 gi|282316956|gb|EFB47330.1| hypothetical protein SASG_00452 [Staphylococcus aureus subsp. aureus
            C427]
          Length = 5327

 Score = 36.6 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 111/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 1039 TNAVTNAQGILDKAHGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 1098

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++ ++   QD+ G +  L     + ++   +   +    
Sbjct: 1099 LNNAQKQDLTSQIEGATTVNGVNGVKTKAQDLDGAMQRLQSAIANKDQTKASENYIDADP 1158

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 1159 TNKTAFDNAITQAESYLNKDH---GANKDKQAVEQAIQSVTSTENALNGDANLQRAKTEA 1215

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++    HL      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 1216 TQAIDNLTHLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIADHDTIV 1274

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    +G+      
Sbjct: 1275 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETGLNG-DTN 1333

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 1334 LATAKQQAKDALRQMTHLSDAQKQSITVQIDNATQVTGVQSVKDNATNLDNAMNQLRNSI 1393

Query: 343  M 343
             
Sbjct: 1394 A 1394


>gi|221199747|ref|ZP_03572790.1| flagellar hook-associated protein 3 [Burkholderia multivorans
           CGD2M]
 gi|221208648|ref|ZP_03581648.1| flagellar hook-associated protein 3 [Burkholderia multivorans CGD2]
 gi|221171459|gb|EEE03906.1| flagellar hook-associated protein 3 [Burkholderia multivorans CGD2]
 gi|221179986|gb|EEE12390.1| flagellar hook-associated protein 3 [Burkholderia multivorans
           CGD2M]
          Length = 411

 Score = 36.6 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 40/366 (10%), Positives = 98/366 (26%), Gaps = 57/366 (15%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
                ++       +++   + ++    L      L+S+  ++  +   ++   +G   +
Sbjct: 45  GAAQAVQLSMTSATLSQYATNQNVALSSLQKEDQALTSVNSLLNSIHSIVIRAGDGALSD 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFT------------- 153
           +     A  L+   +  +T AN TD  G YLF+G  S+  P                   
Sbjct: 105 SDRSALATQLQGYRDQLLTLANSTDGAGNYLFAGYQSTTAPFANGTGGGVVYSGDRGARQ 164

Query: 154 ---KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYW 210
               D+      D     FL               ++     +           ++   +
Sbjct: 165 VQIADTRTIAQGDDGASVFLSVPMLGSQPVPAAGAANQGTATIGAVTITDPSAATNTHTF 224

Query: 211 ANNWSNAS-----------------------------------DHNIKYRIKDTEGIDVS 235
              +   S                                      +       +   V 
Sbjct: 225 TITFGGTSAAPTYTVTDETAAPPTTTAPQPYADGTAIALGNGLSVPVSGTPSPNDTFSV- 283

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLST----VQQGLSGIIEQRAVL 291
                 G      +  +         +D          ++T    +   ++ I+  +A +
Sbjct: 284 TPAPQAGTDVFATLDTMIAALKVPIGSDTVAAAKLANAMTTGTTKLDNTMTNILTVQASV 343

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351
           G  E+ I   +   Q     + + ++        +  +Q   + N +  +     +LQ L
Sbjct: 344 GGREQEIQAMQAVNQTNTLQVTSNLADLTSTNMVSTISQFLQMQNALTGAQKAYAQLQNL 403

Query: 352 SILNYL 357
           S+  Y+
Sbjct: 404 SLFQYI 409


>gi|229090700|ref|ZP_04221933.1| Flagellar hook-associated protein 3 [Bacillus cereus Rock3-42]
 gi|228692642|gb|EEL46368.1| Flagellar hook-associated protein 3 [Bacillus cereus Rock3-42]
          Length = 287

 Score = 36.6 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 50/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    +I + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +      ++  L  +    +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLMLQALSEQNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEKPPFTEDGT 150


>gi|328542112|ref|YP_004302221.1| flagellin-like protein [polymorphum gilvum SL003B-26A1]
 gi|326411862|gb|ADZ68925.1| Flagellin-like protein [Polymorphum gilvum SL003B-26A1]
          Length = 371

 Score = 36.6 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 38/350 (10%), Positives = 99/350 (28%), Gaps = 20/350 (5%)

Query: 8   TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
           + ++   + +    L   S  + +     Q +D G  LG     +   +   +       
Sbjct: 25  SLTVASGLKLDIASLRAASANISQAASMLQIADGG--LGQIGDILGRMQTLASTAQSDQI 82

Query: 68  SNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAG-----MLRDSYE 122
           SN+      +     ++ + +I        + LL G T                  D + 
Sbjct: 83  SNTERGFINTEYSNLVNEVTRIANATEYNGIELLSGTTGVGASLETNAIGTNVEAADGFV 142

Query: 123 SFVTFANMTDEGQYLFSGI--NSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +    AN   +G+ +      N++   +         A  +    L  F           
Sbjct: 143 ALTFDANKRADGEAVTIAFDENTNVFTVTALDGAGGNALVAQSLDLDDFGGAIPDGQTVD 202

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
            +     +  +   DF        +++    N  +      + +++       ++AN+N 
Sbjct: 203 LNFADVGVTIRLSADFDDTAAINANNEVTIQNAAAGQQGTQLVFKVGVAATDTITANING 262

Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300
                           L  + T     V     ++ ++   S I   RA LG     ++ 
Sbjct: 263 S-----------TAGQLGIDATSVTTRVNADAAVTAIETAQSRINSNRANLGALMSRLDF 311

Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
               +  +   ++   S     +      + ++    ++    +  +  +
Sbjct: 312 ANANVGIQIENMEAARSTLQDTDVAEEMTRFTSQQVLVQAGVSMLAQANQ 361


>gi|254445980|ref|ZP_05059456.1| Bacterial flagellin C-terminus domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198260288|gb|EDY84596.1| Bacterial flagellin C-terminus domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 390

 Score = 36.6 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%)

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGT 254
            F    +   ++ E   +++S+A+          + G+  S + +    R++      G 
Sbjct: 225 TFDLATDGTMANLELDGSDFSSATGTVSTASGDISFGLSESGSGDGVEFRNLSVSPQSGV 284

Query: 255 EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314
              S   +  +   L    + TV+  +  +   RA  G  +  +N  +  L      ++ 
Sbjct: 285 SSSSSVGSVASTADLDSVDIETVKDAIGEVATFRAQNGAQQSRLNFAQEQLNTNRVNLEA 344

Query: 315 YISKSIGVEQHTAHAQLSTL 334
             S+ + V+       L+ L
Sbjct: 345 AKSRIMDVDVAAESTNLARL 364


>gi|254993615|ref|ZP_05275805.1| flagellar hook-associated protein FlgL [Listeria monocytogenes FSL
           J2-064]
          Length = 154

 Score = 36.6 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL 257
                 F+ D+       N +  N K+R+  T+ ++V    +   + D+        + +
Sbjct: 2   STSVKPFTTDKTTGEIIYNGTTENKKFRV--TDTLEVEVFHDGSAMTDVFNNIQKIVDAM 59

Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317
                  A + L      T  + +  I      +G  +  +      L +K        S
Sbjct: 60  KTG-DKDALSAL----QETNSKNIEIITNSMTNIGGQKNGVAAYDNVLSSKIVDFSERKS 114

Query: 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
               V    A + L+      + +   +  +QKLSILNY+
Sbjct: 115 NVEEVNMPEAVSNLNKTSIAYQAALQSSVMVQKLSILNYM 154


>gi|218678702|ref|ZP_03526599.1| flagellin C protein [Rhizobium etli CIAT 894]
          Length = 189

 Score = 36.6 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 61/141 (43%), Gaps = 16/141 (11%)

Query: 216 NASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVI-GTEFLSKNLTDGARNVLTKKML 274
            +S  N+ + +  T  ID ++ +       I  +  +  + F S  ++           L
Sbjct: 52  TSSSGNVLFGMTSTGTIDTTSGIIGTSYGTIGSIYSMDISTFGSVEISM---------AL 102

Query: 275 STVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTL 334
           ++++ GL+ + +  + LG     I+ +  F+   ++ ID+ + + +        ++L+ L
Sbjct: 103 TSIEAGLNAMTKAASQLGSISTRIDLQENFVGALSDSIDSGVGRLVDANMEEESSKLTAL 162

Query: 335 INKIEMSYMITTKLQKLSILN 355
             + +++      +Q LSI N
Sbjct: 163 QTQQQLA------IQSLSIAN 177


>gi|313806989|gb|EFS45487.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL087PA2]
          Length = 822

 Score = 36.6 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 72/268 (26%), Gaps = 38/268 (14%)

Query: 99  ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSL- 157
            L           +   ++  ++ S +          Y F       KP       + L 
Sbjct: 397 ALTTDVLAYELLAVVVALVGGAFSSLIAALASGFALDYFF------TKPFYTVTVNEPLH 450

Query: 158 -------------AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN---AQQMTDFIKQLE 201
                             D+  +        +  +G    V+ +       +   + +  
Sbjct: 451 LVALLLYLLTAALVSVVVDRAARKTRVARRAAAESGLLQSVAGLVLRGEDAVESLLSRAT 510

Query: 202 DKF-------SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM--FVAVI 252
           + F         D     NW   SD   ++RI D   ++          R +M    A +
Sbjct: 511 EAFGLSGARLMTDGKVVANWGTTSDQVTEHRIDDHTVVEFHGPEPDASERRLMSVIAAQL 570

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
           GT      L + A+ V        V+  L  +      L             L+++ + +
Sbjct: 571 GTALEQHQLEETAKAVEPLAATDRVRTAL--LSAVGHDLRRPLAAATAAVSGLRSEWSKL 628

Query: 313 DTY--ISKSIGVEQHTAHAQLSTLINKI 338
                       +   A +QL+ L+  +
Sbjct: 629 SDQDRADLLETAD--EALSQLANLVTDL 654


>gi|218677522|ref|ZP_03525419.1| flagellin C protein [Rhizobium etli CIAT 894]
          Length = 302

 Score = 36.6 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+ V+  L  +    A LG   K I  +  F+   ++ ID+ + + +  +     +
Sbjct: 211 IQSALTNVESALKSMTSAGAALGSVSKRIELQENFVSALSDSIDSGVGRLVDADMEEESS 270

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 271 KLSALQTQQQLA------VQSLSIAN 290


>gi|15924424|ref|NP_371958.1| hypothetical protein SAV1434 [Staphylococcus aureus subsp. aureus
            Mu50]
 gi|156979753|ref|YP_001442012.1| hypothetical protein SAHV_1422 [Staphylococcus aureus subsp. aureus
            Mu3]
 gi|81774911|sp|Q931R6|EBHA_STAAM RecName: Full=Extracellular matrix-binding protein ebhA; AltName:
            Full=ECM-binding protein homolog A
 gi|205716440|sp|A7X2C3|EBHA_STAA1 RecName: Full=Extracellular matrix-binding protein ebhA; AltName:
            Full=ECM-binding protein homolog A
 gi|14247205|dbj|BAB57596.1| hypothetical protein ebhA [Staphylococcus aureus subsp. aureus Mu50]
 gi|156721888|dbj|BAF78305.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 6713

 Score = 36.6 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 2425 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 2484

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 2485 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 2544

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 2545 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEA 2601

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 2602 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 2660

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 2661 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 2719

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 2720 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 2779

Query: 343  M 343
             
Sbjct: 2780 A 2780


>gi|260662366|ref|ZP_05863261.1| LOW QUALITY PROTEIN: yhgE protein [Lactobacillus fermentum
           28-3-CHN]
 gi|260553057|gb|EEX26000.1| LOW QUALITY PROTEIN: yhgE protein [Lactobacillus fermentum
           28-3-CHN]
          Length = 483

 Score = 36.6 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 3/162 (1%)

Query: 45  LGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGK 104
           LG  ++ +       + +  +L++ + +   LS +Q  L+   +++  + G    L    
Sbjct: 18  LGTALSQVNSLSTSLSGLQSQLNNLASLQTTLSGAQTTLNQANQLLTTLQGYQGALSAMP 77

Query: 105 TDNNKFPINAGMLRDSYESFVTFANMTDEG--QYLFSGINSSEKPLNGYFTKDSLAKKSF 162
           +           L     S  +  +    G  QY  +G++++    +      +      
Sbjct: 78  SQLAALKQATNSLASGAASLQSGMSTAQAGINQYT-AGVDTAASGASQLSANSASLTNGA 136

Query: 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKF 204
           +Q+  G  +  +    A       + N+  +     QL    
Sbjct: 137 NQLQSGVSQYTAGVNQANAGTGQLTANSAALVSGANQLATAL 178


>gi|255034578|ref|YP_003085199.1| TonB-dependent receptor plug [Dyadobacter fermentans DSM 18053]
 gi|254947334|gb|ACT92034.1| TonB-dependent receptor plug [Dyadobacter fermentans DSM 18053]
          Length = 1181

 Score = 36.6 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 10/107 (9%)

Query: 33  MVTGQ-SSDYGLQLGARVTSILEWEQEKNHIAERLHS-NSLVTKRLSTSQAHLSSMQKIV 90
           + TG   SD GL           + Q  N+        N  V   + +++      Q   
Sbjct: 636 VSTGTAFSDQGL--------SWLFNQTLNYSKSLRDVHNFDVLIGMESTRFQFQESQGTG 687

Query: 91  QDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
                 +V  L G    +     +  L ++  S+   AN   +G+YL
Sbjct: 688 SSFPNDVVETLNGSASGSTTTAVSQRLENASASYFARANYNYKGKYL 734


>gi|218896671|ref|YP_002445082.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           G9842]
 gi|228900320|ref|ZP_04064550.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis IBL
           4222]
 gi|218542219|gb|ACK94613.1| putative flagellar hook-associated protein FlgL [Bacillus cereus
           G9842]
 gi|228859355|gb|EEN03785.1| Flagellar hook-associated protein 3 [Bacillus thuringiensis IBL
           4222]
          Length = 287

 Score = 36.6 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 50/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    ++ + 
Sbjct: 3   VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +      +V  L  +    +       +    +  V
Sbjct: 63  QKDIADSKNVLTQTENTLQGVLKSLTRTDQLMVQALSEQNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEKLPFTEDGT 150


>gi|313814093|gb|EFS51807.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL025PA1]
 gi|313817773|gb|EFS55487.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL046PA2]
 gi|313821401|gb|EFS59115.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL036PA1]
 gi|313824654|gb|EFS62368.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL036PA2]
 gi|313826323|gb|EFS64037.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL063PA1]
 gi|314926442|gb|EFS90273.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL036PA3]
 gi|314961461|gb|EFT05562.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL002PA2]
 gi|314980123|gb|EFT24217.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL072PA2]
 gi|314986977|gb|EFT31069.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL005PA2]
 gi|314990528|gb|EFT34619.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL005PA3]
 gi|315081719|gb|EFT53695.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL078PA1]
 gi|315082907|gb|EFT54883.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL027PA2]
 gi|315086742|gb|EFT58718.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL002PA3]
 gi|315088145|gb|EFT60121.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL072PA1]
 gi|327333804|gb|EGE75521.1| sensor histidine kinase KdpD [Propionibacterium acnes HL096PA3]
 gi|328757845|gb|EGF71461.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL020PA1]
          Length = 822

 Score = 36.6 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 72/268 (26%), Gaps = 38/268 (14%)

Query: 99  ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSL- 157
            L           +   ++  ++ S +          Y F       KP       + L 
Sbjct: 397 ALTTDVLAYELLAVVVALVGGAFSSLIAALASGFALDYFF------TKPFYTVTVNEPLH 450

Query: 158 -------------AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN---AQQMTDFIKQLE 201
                             D+  +        +  +G    V+ +       +   + +  
Sbjct: 451 LVALLLYLLTAALVSVVVDRAARKTRVARRAAAESGLLQSVAGLVLRGEDAVESLLSRAT 510

Query: 202 DKF-------SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM--FVAVI 252
           + F         D     NW   SD   ++RI D   ++          R +M    A +
Sbjct: 511 EAFGLSGARLMTDGKVVANWGTTSDQVTEHRIDDHTVVEFHGPEPDASERRLMSVIAAQL 570

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
           GT      L + A+ V        V+  L  +      L             L+++ + +
Sbjct: 571 GTALEQHQLEETAKAVEPLAATDRVRTAL--LSAVGHDLRRPLAAATAAVSGLRSEWSKL 628

Query: 313 DTY--ISKSIGVEQHTAHAQLSTLINKI 338
                       +   A +QL+ L+  +
Sbjct: 629 SDQDRADLLETAD--EALSQLANLVTDL 654


>gi|302384366|ref|YP_003820189.1| OAR protein precursor [Brevundimonas subvibrioides ATCC 15264]
 gi|302194994|gb|ADL02566.1| OAR protein precursor [Brevundimonas subvibrioides ATCC 15264]
          Length = 1134

 Score = 36.6 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 4/118 (3%)

Query: 102 EGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKS 161
            G T         G+ +   + FV   N      +   GI +  KP+        L    
Sbjct: 312 TGPTGGGFANDINGITQADLDGFVNQFNTVYASDFEVGGI-TRTKPITDEKYTGKLDWNI 370

Query: 162 FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSD---DEYWANNWSN 216
            D         +++S L  +     +        ++   +D       +  W +N+S 
Sbjct: 371 TDSQRLSLTYRHAESGLIQRTNLSRTSAGFDSQWYLTGEDDTAYAAELNSQWTDNFST 428


>gi|229096225|ref|ZP_04227198.1| Flagellar hook-associated protein 3 [Bacillus cereus Rock3-29]
 gi|228687185|gb|EEL41090.1| Flagellar hook-associated protein 3 [Bacillus cereus Rock3-29]
          Length = 287

 Score = 36.6 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 67/204 (32%), Gaps = 2/204 (0%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    ++ + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L       +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGIFKSLTRADQLTVQALNEPNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEV 185
             AN  ++G+Y+F G ++ ++P     T          Q+  G+  +  ++  A     +
Sbjct: 123 YLANTKEQGRYIFGGDSAEKQPFTEDGTYQGGKNDVNWQLNDGYELKAFRNGEALLSPVI 182

Query: 186 SSMN--AQQMTDFIKQLEDKFSDD 207
            ++   ++ M    ++     S +
Sbjct: 183 KTLKQMSEAMQKGDQKALQPLSGE 206


>gi|315107592|gb|EFT79568.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL030PA1]
          Length = 822

 Score = 36.6 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 72/268 (26%), Gaps = 38/268 (14%)

Query: 99  ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSL- 157
            L           +   ++  ++ S +          Y F       KP       + L 
Sbjct: 397 ALTTDVLAYELLAVVVALVGGAFSSLIAALASGFALDYFF------TKPFYTVTVNEPLH 450

Query: 158 -------------AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN---AQQMTDFIKQLE 201
                             D+  +        +  +G    V+ +       +   + +  
Sbjct: 451 LVALLLYLLTAALVSVVVDRAARKTRVARRAAAESGLLQSVAGLVLRGEDAVESLLSRAT 510

Query: 202 DKF-------SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM--FVAVI 252
           + F         D     NW   SD   ++RI D   ++          R +M    A +
Sbjct: 511 EAFGLSGARLMTDGKVVANWGTTSDQVTEHRIDDHTVVEFHGPEPDASERRLMSVIAAQL 570

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
           GT      L + A+ V        V+  L  +      L             L+++ + +
Sbjct: 571 GTALEQHQLEETAKAVEPLAATDRVRTAL--LSAVGHDLRRPLAAATAAVSGLRSEWSKL 628

Query: 313 DTY--ISKSIGVEQHTAHAQLSTLINKI 338
                       +   A +QL+ L+  +
Sbjct: 629 SDQDRADLLETAD--EALSQLANLVTDL 654


>gi|289427484|ref|ZP_06429197.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Propionibacterium acnes J165]
 gi|289159414|gb|EFD07605.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Propionibacterium acnes J165]
          Length = 830

 Score = 36.6 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 72/268 (26%), Gaps = 38/268 (14%)

Query: 99  ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSL- 157
            L           +   ++  ++ S +          Y F       KP       + L 
Sbjct: 405 ALTTDVLAYELLAVVVALVGGAFSSLIAALASGFALDYFF------TKPFYTVTVNEPLH 458

Query: 158 -------------AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN---AQQMTDFIKQLE 201
                             D+  +        +  +G    V+ +       +   + +  
Sbjct: 459 LVALLLYLLTAALVSVVVDRAARKTRVARRAAAESGLLQSVAGLVLRGEDAVESLLSRAT 518

Query: 202 DKF-------SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM--FVAVI 252
           + F         D     NW   SD   ++RI D   ++          R +M    A +
Sbjct: 519 EAFGLSGARLMTDGKVVANWGTTSDQVTEHRIDDHTVVEFHGPEPDASERRLMSVIAAQL 578

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
           GT      L + A+ V        V+  L  +      L             L+++ + +
Sbjct: 579 GTALEQHQLEETAKAVEPLAATDRVRTAL--LSAVGHDLRRPLAAATAAVSGLRSEWSKL 636

Query: 313 DTY--ISKSIGVEQHTAHAQLSTLINKI 338
                       +   A +QL+ L+  +
Sbjct: 637 SDQDRADLLETAD--EALSQLANLVTDL 662


>gi|289424549|ref|ZP_06426332.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Propionibacterium acnes SK187]
 gi|289155246|gb|EFD03928.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Propionibacterium acnes SK187]
          Length = 830

 Score = 36.6 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 72/268 (26%), Gaps = 38/268 (14%)

Query: 99  ILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSL- 157
            L           +   ++  ++ S +          Y F       KP       + L 
Sbjct: 405 ALTTDVLAYELLAVVVALVGGAFSSLIAALASGFALDYFF------TKPFYTVTVNEPLH 458

Query: 158 -------------AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMN---AQQMTDFIKQLE 201
                             D+  +        +  +G    V+ +       +   + +  
Sbjct: 459 LVALLLYLLTAALVSVVVDRAARKTRVARRAAAESGLLQSVAGLVLRGEDAVESLLSRAT 518

Query: 202 DKF-------SDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIM--FVAVI 252
           + F         D     NW   SD   ++RI D   ++          R +M    A +
Sbjct: 519 EAFGLSGARLMTDGKVVANWGTTSDQVTEHRIDDHTVVEFHGPEPDASERRLMSVIAAQL 578

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
           GT      L + A+ V        V+  L  +      L             L+++ + +
Sbjct: 579 GTALEQHQLEETAKAVEPLAATDRVRTAL--LSAVGHDLRRPLAAATAAVSGLRSEWSKL 636

Query: 313 DTY--ISKSIGVEQHTAHAQLSTLINKI 338
                       +   A +QL+ L+  +
Sbjct: 637 SDQDRADLLETAD--EALSQLANLVTDL 662


>gi|255262022|ref|ZP_05341364.1| flagellin protein [Thalassiobium sp. R2A62]
 gi|255104357|gb|EET47031.1| flagellin protein [Thalassiobium sp. R2A62]
          Length = 423

 Score = 36.6 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 52/380 (13%), Positives = 104/380 (27%), Gaps = 69/380 (18%)

Query: 18  LTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLS 77
             K +N D  K    + TG+         A        E +         S SL    ++
Sbjct: 16  TLKSINSDLGKTQSMISTGKEVASAKDNAAVWAISKTMEADVKGFKAISDSLSLGQSTVA 75

Query: 78  TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYL 137
             +    ++  ++ D+ G +V   E   D  K   +   L +  +S V  A     GQ L
Sbjct: 76  VGRNAAETVTDLLTDIKGKIVAAQEENVDRGKLQTDISALTEQIKSVVGAA--QFNGQNL 133

Query: 138 FSGINSSEKP-----LNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQ 192
             G N+         ++   + D  +         G   +N  +         +   +  
Sbjct: 134 VDGSNTGSNANGNTGIDILASLDRNSSGGIAASSIGVDTQNLSTTAGTDITTGTGTGSAD 193

Query: 193 MTDFIKQLEDKFSDDEYWAN-------------NWSNAS--------------------D 219
           ++               +                 S A                     D
Sbjct: 194 ISTLAANGGADLVTITGFTFLDTSGAAAASAALKGSTAGVDLNETNGLVVGDAVELQIGD 253

Query: 220 HNIKYRIKDTEGIDVSANVNMRGIR-------DIMFVAVIGTEFLSKNLTDGARNVLT-- 270
               YR+ + +     A      ++       D  F          +NLT  A   ++  
Sbjct: 254 IKGTYRVSEGDTNASVATGIKDAMQNAGLSTDDFAFDLTTAGTLTIENLTSEANIGVSYE 313

Query: 271 --------------------KKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNN 310
                                  LS+++  L+G I+  A  G  E  +  +  F+ + ++
Sbjct: 314 VSRGSGRLASLEDINVSTDPATALSSIEDMLTGAIDAAASFGSVEGRLETQASFISSLSD 373

Query: 311 IIDTYISKSIGVEQHTAHAQ 330
            + + I   +  +     A+
Sbjct: 374 SLKSGIGAMVDADMEETSAR 393


>gi|114054782|gb|ABI49992.1| FlaA [Clostridium botulinum]
 gi|114054784|gb|ABI49993.1| FlaA [Clostridium botulinum]
          Length = 279

 Score = 36.6 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 4/102 (3%)

Query: 226 IKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKN----LTDGARNVLTKKMLSTVQQGL 281
                 +      N      +   A+        +    +    +     KM+ T+ + +
Sbjct: 141 TGTGSELTFQIGANSGQTIQLAISAMDVAALGVASDKVTIGSAKKASEITKMIETIDKAI 200

Query: 282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
           + +  +RA LG ++  +      L N    +    S+   V+
Sbjct: 201 NTVSGERAKLGANQNRLEHTIANLDNSAENLQAAESRIRDVD 242


>gi|15927015|ref|NP_374548.1| hypothetical protein SA1267 [Staphylococcus aureus subsp. aureus
            N315]
 gi|81781598|sp|Q99U54|EBHA_STAAN RecName: Full=Extracellular matrix-binding protein ebhA; AltName:
            Full=ECM-binding protein homolog A
 gi|13701232|dbj|BAB42527.1| ebhA [Staphylococcus aureus subsp. aureus N315]
          Length = 6713

 Score = 36.6 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 30/361 (8%)

Query: 8    TSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLH 67
            T+++     IL K   ++  K   E    Q +     L             K ++    H
Sbjct: 2425 TNAVTNAQGILDKANGQNMTKAQVEAALNQVTTAKNALNGDANVRQAKSDAKANLGTLTH 2484

Query: 68   SNSLVTKRLS------TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGML---- 117
             N+   + L+      T+   ++S++   QD+ G +  L     + ++   +   +    
Sbjct: 2485 LNNAQKQDLTSQIEGATTVNGVNSVKTKAQDLDGAMQRLESAIANKDQTKASENYIDADP 2544

Query: 118  --RDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF--DQMLQGFLEEN 173
              + ++++ +T A       +   G N  ++ +       +  + +   D  LQ    E 
Sbjct: 2545 TKKTAFDNAITQAESYLNKDH---GTNKDKQAVEQAIQSVTSTENALNGDANLQCAKTEA 2601

Query: 174  SKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGID 233
            ++++     L      A +      Q     +D +  A + +NA D  +K  I D + I 
Sbjct: 2602 TQAIDNLTQLNTPQKTALKQQVNAAQRVSGVTDLKNSATSLNNAMDQ-LKQAIGDHDTIV 2660

Query: 234  VS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAV 290
                  N +                 ++ +                V    + +      
Sbjct: 2661 AGGNYTNASPDKQGAYTDAYNAAKNIVNGSPNVITNAADVTAATQRVNNAETSLNG-DTN 2719

Query: 291  LGISEKNINEERVFL----QNKNNIIDTYISKSIGVEQ----HTAHAQLSTLINKIEMSY 342
            L  +++   +    +      +   I   I  +  V            L   +N++  S 
Sbjct: 2720 LATAKQQAKDALRQMTHLSDAQKQSITGQIDSATQVTGVQSVKDNATNLDNAMNQLRNSI 2779

Query: 343  M 343
             
Sbjct: 2780 A 2780


>gi|312795184|ref|YP_004028106.1| DNA repair protein recN [Burkholderia rhizoxinica HKI 454]
 gi|312166959|emb|CBW73962.1| DNA repair protein recN [Burkholderia rhizoxinica HKI 454]
          Length = 590

 Score = 36.2 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 277 VQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH--TAHAQLSTL 334
           +    + I   +A LG     ++E    +  +   +   +     ++     A A L   
Sbjct: 256 LSHAANLIDGVQAALGA----LSESDDAMITQLGTLIAKLRDLAEIDSALGDALAALEPA 311

Query: 335 INKI-EMSYMITTKLQKLSI 353
             ++ E +Y +T   Q+L +
Sbjct: 312 EIQLQEAAYSLTHYAQRLEL 331


>gi|221215579|ref|ZP_03588542.1| flagellar hook-associated protein 3 [Burkholderia multivorans CGD1]
 gi|221164567|gb|EED97050.1| flagellar hook-associated protein 3 [Burkholderia multivorans CGD1]
          Length = 411

 Score = 36.2 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 40/366 (10%), Positives = 98/366 (26%), Gaps = 57/366 (15%)

Query: 48  RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
                ++       +++   + ++    L      L+S+  ++  +   ++   +G   +
Sbjct: 45  GAAQAVQLSMTSATLSQYATNQNVALSSLQKEDQALTSVNNLLNSIHSIVIRAGDGALSD 104

Query: 108 NKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFT------------- 153
           +     A  L+   +  +T AN TD  G YLF+G  S+  P                   
Sbjct: 105 SDRSALATQLQGYRDQLLTLANSTDGAGNYLFAGYQSTTAPFANGTGGGVVYSGDRGARQ 164

Query: 154 ---KDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYW 210
               D+      D     FL               ++     +           ++   +
Sbjct: 165 VQIADTRTIAQGDDGASVFLSVPMLGSQPVPAAGAANQGTATIGAVTITDPSAATNTHTF 224

Query: 211 ANNWSNAS-----------------------------------DHNIKYRIKDTEGIDVS 235
              +   S                                      +       +   V 
Sbjct: 225 TITFGGTSAAPTYTVTDETVAPPTTTAPQPYAAGTAIALGNGLSVPVSGTPSPNDTFSV- 283

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLST----VQQGLSGIIEQRAVL 291
                 G      +  +         +D          ++T    +   ++ I+  +A +
Sbjct: 284 TPAPQAGTDVFATLDTMIAALKVPIGSDTVAAAKLANAMTTGTTKLDNTMTNILTVQASV 343

Query: 292 GISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351
           G  E+ I   +   Q     + + ++        +  +Q   + N +  +     +LQ L
Sbjct: 344 GGREQEIQAMQAVNQTNTLQVTSNLADLTSTNMVSTISQFLQMQNALTGAQKAYAQLQNL 403

Query: 352 SILNYL 357
           S+  Y+
Sbjct: 404 SLFQYI 409


>gi|222833047|gb|EEE71524.1| predicted protein [Populus trichocarpa]
          Length = 217

 Score = 36.2 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 42/106 (39%)

Query: 252 IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311
           +     +     GA      + L+ +  G+S +   R+  G      +     ++N+ + 
Sbjct: 111 VIAGVKNGATDAGAMQQALGRGLNELDAGMSRVQAMRSFAGDQLNRADRLEDDMKNQADQ 170

Query: 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
            +   S++  ++   A + +      ++ +      +QKLS+ N++
Sbjct: 171 QEAARSRAEDIDMIKALSDVDMQKVGMQAALQSYASIQKLSLFNFI 216


>gi|146281778|ref|YP_001171931.1| flagellar hook-associated protein FlgL [Pseudomonas stutzeri A1501]
 gi|145569983|gb|ABP79089.1| flagellar hook-associated protein FlgL [Pseudomonas stutzeri A1501]
          Length = 526

 Score = 36.2 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 20  KELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTS 79
           ++   + VK  +++ +G+              +L+ EQ++  + +   + +  T  LS  
Sbjct: 17  QKGYANIVKTQQQISSGERIQTPADDPVGAARLLQLEQQQALLTQYQGNLTTATNSLSQE 76

Query: 80  QAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLF 138
           +  L+S+  ++Q      V    G   +      A  L           N  D  GQYLF
Sbjct: 77  EGILNSINNLLQKARELAVEAGSGALSDEDRSSIASELEQIENQLYALMNSKDANGQYLF 136

Query: 139 SGINSSEKP 147
           +G +S  +P
Sbjct: 137 AGSSSGTQP 145


>gi|330906259|ref|XP_003295411.1| hypothetical protein PTT_00795 [Pyrenophora teres f. teres 0-1]
 gi|311333324|gb|EFQ96488.1| hypothetical protein PTT_00795 [Pyrenophora teres f. teres 0-1]
          Length = 1605

 Score = 36.2 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 14/155 (9%)

Query: 140 GINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQ 199
           G N++  P     T       +FD  +Q    +++   LAG +L     +      F + 
Sbjct: 364 GSNNNNLPYYLPTTPHQDTNTNFDTAIQDTNFDDAIFDLAGGNLPAFGDDGNSANMFAQG 423

Query: 200 LEDKFSDDE------YWANNWS-NASDHNIKYRIKDTE-------GIDVSANVNMRGIRD 245
            +  ++D         +   W   AS   +       E                   +  
Sbjct: 424 FQGAWNDIPVDPSLGSFTTAWEPQASSQPMPVNPSLEELVGAWVPQASSGDMAANPSLEQ 483

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG 280
           +M   V  +      +     +      ++T    
Sbjct: 484 LMDSWVAQSSSSDVTIDPALLDGTVVSAVTTSSTA 518


>gi|209695935|ref|YP_002263865.1| flagellin [Aliivibrio salmonicida LFI1238]
 gi|208009888|emb|CAQ80201.1| flagellin subunit F [Aliivibrio salmonicida LFI1238]
          Length = 385

 Score = 36.2 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 54/386 (13%), Positives = 117/386 (30%), Gaps = 47/386 (12%)

Query: 1   MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60
           MK  G  T SI    NI      +          T   +D   +L +     L+     +
Sbjct: 1   MKRPGARTMSISVNTNISAMTAQRYMNNA-----TAAQADSMEKLSSG----LKINSAAD 51

Query: 61  HIAERLHSNSLVTKR-------------LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDN 107
             +    SN +  +              +S +Q    +M++   +++  L  L    ++ 
Sbjct: 52  DASGLQISNRMTAQTRGLNVAVRNANDGMSIAQTAEGAMKETT-NVLQRLRDLSLQSSNG 110

Query: 108 NKFPINAGMLRDSYESFVTFAN-----MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162
           +    +   +++   S     N      +  G  L +G     K              + 
Sbjct: 111 SNTDADREAMQEEASSLTDELNRIAETTSFAGTRLING-EFGTKSFQIGADSGEAVAMTL 169

Query: 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNI 222
           + M         KS  A +  +++    ++ + F  Q  DK  +++       +  D   
Sbjct: 170 NSMRADEATMGGKSYFAEEGRDINWTVGKENSQFNVQYNDKNGNEQKINIAAKSGDDIEE 229

Query: 223 KYRIKDTEGIDVSANVNMRGIRDIMFVAVIGT-----------EFLSKNLTDGARNVL-- 269
                + +  ++SA+V  +G+  +       +           E      +D     +  
Sbjct: 230 LATYINGQTNELSASVTEKGVLQVFMSGETISSPLTFSGSLANELKMGGESDDTVASMNL 289

Query: 270 -----TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQ 324
                 ++ +  +   L  +   RA LG  +         L N N  I    S+   V+ 
Sbjct: 290 TTVGGAQRSIDVIDAALQYVDGNRASLGAFQNRFESAVNNLTNINENISDSNSQIKDVDF 349

Query: 325 HTAHAQLSTLINKIEMSYMITTKLQK 350
                 L+      + S  I  + ++
Sbjct: 350 AKETTNLTKNQILTQSSSSILAQAKQ 375


>gi|328722084|ref|XP_001948722.2| PREDICTED: hypothetical protein LOC100159668 [Acyrthosiphon pisum]
          Length = 1500

 Score = 36.2 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/198 (10%), Positives = 50/198 (25%), Gaps = 28/198 (14%)

Query: 46  GARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT 105
           G+         Q+    A    + S    + +TS A          +         + +T
Sbjct: 504 GSSQGESFSTNQQATSAAANQQTTSAAANQQTTSAAANQQTTSASANQQTTSAAANQ-QT 562

Query: 106 DNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQM 165
            +            + ++    AN         +   ++    N   T     +++    
Sbjct: 563 TSAAANQQTTSAAANQQTTSAAANQQTTSAA--ANQQTTSAAANQQTTSSGANQQTTSAG 620

Query: 166 LQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYR 225
                  N ++  AG + + +   + Q T                       S+      
Sbjct: 621 F------NQQTTGAGSNQQTTGAGSNQQTTGFG-------------------SNQQTTSE 655

Query: 226 IKDTEGIDVSANVNMRGI 243
             + +  +V +N    G 
Sbjct: 656 GSNQQTTNVGSNQQTTGF 673


>gi|300311386|ref|YP_003775478.1| flagellin filament structural protein [Herbaspirillum seropedicae
           SmR1]
 gi|124483540|emb|CAM32643.1| Flagellin protein; filament structural protein [Herbaspirillum
           seropedicae]
 gi|167731129|emb|CAP19677.1| flagellar protein [Herbaspirillum seropedicae]
 gi|300074171|gb|ADJ63570.1| flagellin protein; filament structural protein [Herbaspirillum
           seropedicae SmR1]
          Length = 362

 Score = 36.2 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 98/337 (29%), Gaps = 3/337 (0%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNH 61
             + I+T+                     + + +G   +      A +        +   
Sbjct: 1   MASVINTNIPSLNTQRNLNASQSSLNTSIQRLSSGLRVNSAKDDAAGLAIADRMNSQVKG 60

Query: 62  IAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121
           +A    + +       T++  LS++   +Q M    V    G                  
Sbjct: 61  LAVAQRNANDGISMAQTAEGALSTVGDNLQRMRELAVQAANGTNSAQDRKTLNDEYTQLS 120

Query: 122 ESFVTFAN-MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180
           +      N  +  GQ LF+G         G  + +  A  +    +   + +N  +    
Sbjct: 121 QEVFRVLNGTSFNGQNLFTGTGQGASAGTGSDSANVSASLTLSFQVGANVSDNKLNDQIT 180

Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240
             L+  S N           +           + + A+  + K  + +      S + + 
Sbjct: 181 ITLDDLSNNGTMANVIGTSAKGLIGLGNTSGVSTAQATYTSAKAALDNLFATGSSLSSSA 240

Query: 241 RGIRDIMFVAVIGTE--FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNI 298
                +   A + +    L + +   +     +K +  + + +S I  +RA  G  +   
Sbjct: 241 LASSAVTLQATVDSAKLALDQAVAAPSAQSDAQKAIQNLDKAISLISSKRAEFGAVQNRF 300

Query: 299 NEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLI 335
           +     LQ  +  I +  S+ +  +     A L+   
Sbjct: 301 SAVISNLQVSSENITSSRSRIMDTDYAQETANLTRAQ 337


>gi|46578935|ref|YP_009743.1| flagellar hook-associated protein FlgL [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603464|ref|YP_967864.1| flagellar hook-associated protein 3 [Desulfovibrio vulgaris DP4]
 gi|46448347|gb|AAS95002.1| flagellar hook-associated protein FlgL, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563693|gb|ABM29437.1| flagellar hook-associated protein 3 [Desulfovibrio vulgaris DP4]
 gi|311232793|gb|ADP85647.1| flagellar hook-associated protein 3 [Desulfovibrio vulgaris RCH1]
          Length = 523

 Score = 36.2 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 35/99 (35%)

Query: 50  TSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNK 109
             +L +      + +   +       L+ + + L+SM  ++  + G              
Sbjct: 47  ARVLNYRASLGDVEQYKKNVDTAKGWLNLADSTLTSMNTVLTRIKGLAEQAATSSVSPEN 106

Query: 110 FPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPL 148
               +  LR  YE  +  AN   E +++F+G    E P 
Sbjct: 107 RKQISFELRQQYEQLINLANTKFENRHIFAGHKYDEAPF 145



 Score = 36.2 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 33/88 (37%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +K L  +      I+   A +G  E  ++     L N+     T +S    V+      
Sbjct: 436 VQKCLDELNGVSKTILTAAASIGGRENRLDVVSGVLDNQKLDQTTRMSAVEDVDFSELMT 495

Query: 330 QLSTLINKIEMSYMITTKLQKLSILNYL 357
           +L+            ++ + ++++ N+L
Sbjct: 496 RLAQEQLIYNSVLKSSSMIMQMNLSNFL 523


>gi|242392308|dbj|BAH80327.1| flagellin [Geobacillus stearothermophilus]
          Length = 271

 Score = 36.2 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 1/113 (0%)

Query: 212 NNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLT-DGARNVLT 270
           +  SN +  N K  +  +         N   I ++    +  T           A N L 
Sbjct: 122 DRISNTTQFNTKNLLDGSLNATFQVGANSGQIINLTIATMNSTSLTVGAANISVANNSLA 181

Query: 271 KKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323
              ++ +   ++ + ++R+ LG  +  +      L      +    S+   V+
Sbjct: 182 SSSIANIDAAINAVSQERSKLGALQNRLEYTINNLSTSAENLTAAESRIRDVD 234


>gi|242003307|ref|XP_002422689.1| hypothetical protein Phum_PHUM006420 [Pediculus humanus corporis]
 gi|212505511|gb|EEB09951.1| hypothetical protein Phum_PHUM006420 [Pediculus humanus corporis]
          Length = 1679

 Score = 36.2 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 80/276 (28%), Gaps = 13/276 (4%)

Query: 25   DSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHI-------AERLHSNSLVTKRLS 77
            ++  L   + TG+  +   +L +          E N +            +N  +  +  
Sbjct: 1202 NASNLSTRLNTGRIVNCPKRL-SNALQHASQNSELNKLLLEKSDNRLLTDTNKKLNDKND 1260

Query: 78   -TSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQY 136
              SQ    +++ + ++      +      + +              S             
Sbjct: 1261 GVSQTFSDNIKLVSENGKLSQALSNNNNNNIDSGTNVNISAAGHSSSNSNLGLSMPGLSA 1320

Query: 137  LFSGINSSEKPLNGYFTKDSLA-KKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTD 195
            L +G  S++ P+ G  T  SL  + +           +    +  Q   VS+++  Q  +
Sbjct: 1321 LLAGTPSADNPIPGASTSSSLLERLTSSTPNTTAAFSSPPLPVTPQSPNVSALSPNQNIN 1380

Query: 196  FIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTE 255
            F K     FS         S  S+  +            S+  +    +     +     
Sbjct: 1381 FQKS---SFSTSPNSNAFNSTNSNSPLSNITSPASNFTSSSPKSQMQFQSSSPSSKEVMG 1437

Query: 256  FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVL 291
              S   +      ++  +     QG++G+   +  +
Sbjct: 1438 ITSPLSSPPGTTPVSLNLQGLSLQGITGLQNVQVSI 1473


>gi|126734097|ref|ZP_01749844.1| flagellin-like protein [Roseobacter sp. CCS2]
 gi|126716963|gb|EBA13827.1| flagellin-like protein [Roseobacter sp. CCS2]
          Length = 512

 Score = 36.2 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 62/209 (29%), Gaps = 14/209 (6%)

Query: 129 NMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSM 188
           N +  G   F+   ++     G     ++  ++ +                     V+  
Sbjct: 281 NTSGNGAATFALQANNVTAAVGTTASQTIGSRASEIAFSATAGVADGDGYRATIGGVNF- 339

Query: 189 NAQQMTDFIKQLEDKFSDDE-YWANNWSNASDHNIKYRIKDTEGIDVSANV--NMRGIRD 245
                 D++    + F D           A   NI   +K  E          N   ++ 
Sbjct: 340 ------DYVAGPGEIFEDVARGLKTVIDGAGVENISTNVKQDETTGAWVLQIDNDGAVQS 393

Query: 246 IMFVAVIGTEFLSKNLTDGARNVLTKK----MLSTVQQGLSGIIEQRAVLGISEKNINEE 301
           ++     G       +     +V T +     L+ ++  ++  I+  A  G S+  I  +
Sbjct: 394 LVEAGAAGGTATGGLVGLDKLDVTTDEGTEAALANIETYINTTIDAAADFGSSQGRIETQ 453

Query: 302 RVFLQNKNNIIDTYISKSIGVEQHTAHAQ 330
             F+    + + + I   +  +     A+
Sbjct: 454 SDFISKLTDSLKSGIGALVDADLEETSAR 482


>gi|256376480|ref|YP_003100140.1| flagellin domain protein [Actinosynnema mirum DSM 43827]
 gi|255920783|gb|ACU36294.1| flagellin domain protein [Actinosynnema mirum DSM 43827]
          Length = 386

 Score = 36.2 bits (82), Expect = 7.8,   Method: Composition-based stats.
 Identities = 27/377 (7%), Positives = 97/377 (25%), Gaps = 40/377 (10%)

Query: 7   STSSIFERMNILT---KELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           S  +       L+   K++     KL   +   +++D    L              + I 
Sbjct: 7   SNIAAMNAYRNLSVNDKQMAGSLEKLSSGLRINRAADDAAGLSISQGLT-------SQIG 59

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +       ++  Q    ++ +  + +     + ++     ++        +  +  
Sbjct: 60  GLKVAARNAQDGVNVVQTADGALNESAEILQRMRDLAVQASNGGSQDTNARAAAQTEFGQ 119

Query: 124 F------------------VTFANMTDEGQYLFSGINSSEKPLN---GYFTKDSLAKKSF 162
                              +  A     G +     N+++  +          S      
Sbjct: 120 LQKELDRIAKTTSFGGQKLLDTAGTAYNGTFQVGANNTADDQIQVNLDATVFGSSGGTKS 179

Query: 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDF---IKQLEDKFSDDEYWANNWSNASD 219
              + G   +++            +  A         +  +  + + D  ++  ++ + D
Sbjct: 180 SYTVSGGTYDSATLDTKTITATQGATTATVTLATPADLDAVVSQLNADATFSGGFTASKD 239

Query: 220 H---NIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGAR---NVLTKKM 273
                I+ +   T  + ++    + G          G +     +    +       +  
Sbjct: 240 GGELKIESKTNGTGAVTLTGTSGLTGAGTNGTAGATGFDSAGLGVGTTVKVDTTANAQSA 299

Query: 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333
           + ++   + G+   RA LG  +         +  +   +    S     +      + + 
Sbjct: 300 IDSIDSAIKGLSTARAQLGAYQNRFEHTINNINVQVENLSASKSNITDTDMAQEMVKFTR 359

Query: 334 LINKIEMSYMITTKLQK 350
                +    +  +  +
Sbjct: 360 SQILSQAGTAMLAQANQ 376


>gi|229102338|ref|ZP_04233046.1| Flagellar hook-associated protein 3 [Bacillus cereus Rock3-28]
 gi|229115180|ref|ZP_04244590.1| Flagellar hook-associated protein 3 [Bacillus cereus Rock1-3]
 gi|228668320|gb|EEL23752.1| Flagellar hook-associated protein 3 [Bacillus cereus Rock1-3]
 gi|228680985|gb|EEL35154.1| Flagellar hook-associated protein 3 [Bacillus cereus Rock3-28]
          Length = 287

 Score = 36.2 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 49/148 (33%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ +    +     +     +    ++ + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANMEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +       V  L       +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGIFKSLTRADQLTVQALNEPNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ ++P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEKQPFTEDGT 150


>gi|116250490|ref|YP_766328.1| flagellin A protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255138|emb|CAK06212.1| flagellin, major subunit of flagellum [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 301

 Score = 36.2 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+ V+  L  +    A LG     I+ +  F+   ++ ID+ + + +        +
Sbjct: 211 IQSALTNVEAALKAMTSAGAALGSLSSRIDAQDDFVSALSDSIDSGVGRLVDANMEEESS 270

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 271 RLSALQTQQQLA------IQSLSIAN 290


>gi|13560136|emb|CAC36202.1| flagelline [Treponema denticola]
          Length = 234

 Score = 36.2 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 8/120 (6%)

Query: 236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVL-----TKKMLSTVQQGLSGIIEQRAV 290
              NM          +       +N+ D +   +       + + T+ + +  I +QRA 
Sbjct: 112 IGANMDQRTRAYIGTMTAKALGVRNIGDESIMTIETPEKANRAIGTLDEAIKKINKQRAD 171

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK 350
           LG  +  +    V +      +    S+   V+   A   +    N+I      T  L +
Sbjct: 172 LGAYQNRLELTVVGINIAAENLQASESRIRDVDM--AKEMVDYTKNQILTQ-SGTAMLAQ 228


>gi|218673669|ref|ZP_03523338.1| putative flagellin protein [Rhizobium etli GR56]
          Length = 311

 Score = 36.2 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 111/352 (31%), Gaps = 54/352 (15%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + +N         + +G   +      A  +       +   ++
Sbjct: 2   TSILTNNAAMAALQTLRGVNDSLKDTQGRVSSGYRVEKAADNAAYWSIATTMRSDNLALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+ A + S   +V ++   +V   E   D  K       L++   S
Sbjct: 62  AVSDALGLGAAKVDTAYAAMDSALDVVSEIKAKIVAATEKGVDKTKIQQELDQLQEQLLS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N        +    S  K      +                 
Sbjct: 122 IAQSAS--------FSGEN--------WVAGASGTKSVVSSFV----------------R 149

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           + S+  + +MTD++                  + S  N+ + +  T  I+ S+ +     
Sbjct: 150 DGSNAVSVKMTDYVLD----------------SGSLGNVLFGMTSTGAIETSSGIIGTAF 193

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                  VI    +      G         L+ ++  L  +    + LG     I  +  
Sbjct: 194 NGTYGGTVIVMPSIYDLDIIGFTQGQLDAALTGIELVLGAMTAAGSALGSISTRIQLQEN 253

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+   ++ ID+ I + +  +     ++LS L  + ++       +Q LSI N
Sbjct: 254 FVSGLHDSIDSGIGRLVDADMEEESSRLSALQTQQQLG------IQSLSIAN 299


>gi|184156136|ref|YP_001844476.1| hypothetical protein LAF_1660 [Lactobacillus fermentum IFO 3956]
 gi|183227480|dbj|BAG27996.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 913

 Score = 36.2 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 61/190 (32%), Gaps = 9/190 (4%)

Query: 17  ILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRL 76
               +L+    K    + T Q       LG  ++ +       + +  +L++ + +   L
Sbjct: 426 TTKAQLDTIVQKAQSNVTTIQ------GLGTALSQVNSLSTSLSGLQSQLNNLASLQTTL 479

Query: 77  STSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEG-- 134
           S +Q  L+   +++  + G    L    +           L     S  +  +    G  
Sbjct: 480 SGAQTTLNQANQLLTTLQGYQGALSAMPSQLAALKQATNSLASGAASLQSGMSTAQAGIN 539

Query: 135 QYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMT 194
           QY  +G++++    +      +      +Q+  G  +  +    A       + N+  + 
Sbjct: 540 QYT-AGVDTAASGASQLSANSASLTSGANQLQSGVSQYTAGVNQANAGTGQLTANSAALV 598

Query: 195 DFIKQLEDKF 204
               QL    
Sbjct: 599 SGANQLATAL 608


>gi|317406194|gb|EFV86443.1| flagellar hook-associated protein 3 [Achromobacter xylosoxidans
           C54]
          Length = 419

 Score = 36.2 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQS----SDYGLQ--LGARVTSILEWEQEK 59
           +STS ++            D  +L E++ +G+     +D  L   L   V          
Sbjct: 3   LSTSMMYSNGLKGVLAQESDMNRLVEQVGSGKKFLTPADDPLSASLAINVAQTQSMNSTY 62

Query: 60  NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119
                   +N      L      L S+   + D+   +V    G   ++     +  L++
Sbjct: 63  ALNRNTAKTN------LGQENNVLDSITTALADVRTRVVQAGNGTFADSDRQALSTALKN 116

Query: 120 SYESFVTFANMTD-EGQYLFSGINSSEKP 147
           + ++ +  AN TD  GQYLFSG      P
Sbjct: 117 ARDALLGLANSTDGNGQYLFSGYQGGVVP 145


>gi|306820967|ref|ZP_07454587.1| flagellin [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551081|gb|EFM39052.1| flagellin [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 354

 Score = 36.2 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 83/305 (27%), Gaps = 29/305 (9%)

Query: 61  HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120
            IA    ++      +S  Q   +++ ++   +     + ++   D NK   +   ++  
Sbjct: 55  QIAGLQRASKNSLDGISMIQTAETALDEVHSMLQRMRELSVQAANDTNKLE-DRESIQKE 113

Query: 121 YESFVTFAN-----MTDEGQYLFSGINSSEKP---LNGYFTKDSLAKKSFDQMLQGFLEE 172
                +  N            +F+  N        +N      + A +  D   Q     
Sbjct: 114 INQLTSEINRIGEATEFNKMKMFTADNEDGTAKSNMNIPVQLGANANQIMDVKFQTLSST 173

Query: 173 NSKSLLAGQHLEVSSMN----AQQMTDFIKQLEDKFSDDEYWANNWSNASD--HNIKYRI 226
           +       Q  E   +N           I +        +Y       A D   N+  + 
Sbjct: 174 SLGISGVNQGGEAFDINKVYVGHTHGTTIDEQTGAPVTPQYVKGAKYRAVDELQNMSIKE 233

Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIE 286
           +        AN N    ++        +                   +      +S +  
Sbjct: 234 RVGNVPQKDANGNFEYKKEYALDVTTASS--------------ATAAIHVYDNAISRVSS 279

Query: 287 QRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITT 346
            RA LG S+  +      L +    +   +S+    +     ++ +      +    + +
Sbjct: 280 MRASLGASQNRLEHTIKTLDSSAENVTQTMSRIQDTDIAEQMSEFTKYNILQQSGTSMLS 339

Query: 347 KLQKL 351
           +  +L
Sbjct: 340 QANQL 344


>gi|225181621|ref|ZP_03735062.1| flagellar hook-associated protein 3 [Dethiobacter alkaliphilus AHT
           1]
 gi|225167729|gb|EEG76539.1| flagellar hook-associated protein 3 [Dethiobacter alkaliphilus AHT
           1]
          Length = 296

 Score = 36.2 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 34/93 (36%)

Query: 265 ARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQ 324
           A      + ++ + Q +  ++++RA  G     +         +   + T  SK   ++ 
Sbjct: 203 ADTADINQSIADLSQSIDWVLDKRAAHGALSNGLELTENNNGAQKLNLTTLRSKLEDIDF 262

Query: 325 HTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357
                  ST+      S     ++   S++++L
Sbjct: 263 AETFMNYSTMDTLYRASLSAGARIMVPSLVDFL 295


>gi|116254453|ref|YP_770291.1| flagellin protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259101|emb|CAK10212.1| Probable flagellin protein. Similar to FlaA, FlaB, FlaC and FlaE
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 311

 Score = 36.2 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 112/352 (31%), Gaps = 54/352 (15%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           T I T++         + +N         + +G   +      A  +       +   ++
Sbjct: 2   TSILTNNAAMAALQTLRGVNDSLKDTQGRVSSGYRVEKAADNAAYWSIATTMRSDNMALS 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
               +  L   ++ T+ + + S   +V D+   +V   E   D  K       L++   S
Sbjct: 62  AVSDALGLGAAKVDTAYSAMDSALDVVSDIKAKIVAATEKGVDKTKIQQELDQLQEQLLS 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
               A+        FSG N        +    S  K      +                 
Sbjct: 122 IAQSAS--------FSGEN--------WVAGASGTKSVVSSFV----------------R 149

Query: 184 EVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243
           + S+  + +MTD++                  + S  N+ + +  T  I+ S+ +     
Sbjct: 150 DGSNAVSVKMTDYVLD----------------SGSLGNVLFGMTSTGAIETSSGIIGTAF 193

Query: 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERV 303
                  VI    +      G         L+ V+  L  +    + LG     I  +  
Sbjct: 194 NGTYGSTVIVMASIYDLDITGFTQGQLDAALTGVELVLGAMTAAGSALGSISTRIQLQET 253

Query: 304 FLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           F+   ++ ID+ + + +  +     ++LS L  + +++      +Q LSI N
Sbjct: 254 FVSGLHDSIDSGVGRLVDADMEEESSKLSALQTQQQLA------IQSLSIAN 299


>gi|90418695|ref|ZP_01226606.1| possible flagellin protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336775|gb|EAS50480.1| possible flagellin protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 579

 Score = 36.2 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
            T     ++   A     +  L  V      ++   AVLG   K +  +  F +     +
Sbjct: 472 LTAIGILDVDVAANPNAIEDYLQQVDTMQQRVVSGAAVLGAISKRLEMQTEFTRTVTQTL 531

Query: 313 DTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILN 355
           +  IS+ +  +      +   L  + +++      +Q LS+ N
Sbjct: 532 EQGISRLVDADMEETSTRYRALEAQRQLA------VQSLSLAN 568


>gi|49477312|ref|YP_035859.1| flagellar hook-associated protein FlgL [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49328868|gb|AAT59514.1| flagellar hook-associated protein 3 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 287

 Score = 36.2 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%)

Query: 6   ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAER 65
           +ST            +LN        ++ +G+ + +  +     +     +    +I + 
Sbjct: 3   VSTFQNASWAKNQLMDLNVQQQYHRNQVTSGKKNLFMSEDPLAASKSFAIQHSLANIEQM 62

Query: 66  LHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFV 125
               +     L+ ++  L  + K +      ++  L  +    +       +    +  V
Sbjct: 63  QKDLADSKNVLTQTENTLQGVFKSLTRADQLMLQALSEQNGEKELKAIGAEIDQILKQVV 122

Query: 126 TFANMTDEGQYLFSGINSSEKPLNGYFT 153
             AN  ++G+Y+F G ++ + P     T
Sbjct: 123 YLANTKEQGRYIFGGDSAEKPPFTEDGT 150


>gi|209547937|ref|YP_002279854.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533693|gb|ACI53628.1| flagellin domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 302

 Score = 36.2 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 270 TKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHA 329
            +  L+ V+  L  +    A LG   K I  +  F+   ++ ID+ + + +  +     +
Sbjct: 211 IQSALTNVEAALKSMTSAGAALGSISKRIELQENFVSALSDSIDSGVGRLVDADMEEESS 270

Query: 330 QLSTLINKIEMSYMITTKLQKLSILN 355
           +LS L  + +++      +Q LSI N
Sbjct: 271 KLSALQTQQQLA------VQSLSIAN 290


>gi|551519|gb|AAD10271.1| polar flagellin [Vibrio parahaemolyticus]
          Length = 384

 Score = 35.8 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 112/384 (29%), Gaps = 52/384 (13%)

Query: 10  SIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSN 69
           ++    N+      +   K   E+ T            R++S  +    K+  A    SN
Sbjct: 2   AVTVSTNVSAMTAQRYLNKATNELNTSM---------ERLSSGHKINSAKDDAAGLQISN 52

Query: 70  SLVTKR-------------LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGM 116
            L  +              +S +Q    +M +    M     + ++     N       +
Sbjct: 53  RLTAQSRGLDVAMRNANDGISIAQTAEGAMNEATSVMQRMRDLAIQSSNGTNSPAERQAI 112

Query: 117 LRDSYESFVTFAN-----MTDEGQYL----FS------GINSSEKPLNGYFTKDSLAKKS 161
             +S  + V   N      +  G+ L    F       G +S E  + G  +  +   + 
Sbjct: 113 NEESM-ALVDELNRIAETTSFGGRRLLNGSFGEAAFQIGASSGEAMIMGLTSIRADDTRM 171

Query: 162 FDQMLQGFLE-------ENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNW 214
                   +        + +K+ L      +       + D    +  K  DD      +
Sbjct: 172 GGVTFFSEVGKGKDWGVDPTKADLKITLPGMGEDEDGNVDDLEININAKAGDDIEELATY 231

Query: 215 SNASDHNIKYRIKDTEGIDVSAN-VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKK- 272
            N     I   + +   + +     N++G   I            + +    +++     
Sbjct: 232 INGQSDMINASVSEDGKLQIFVAHPNVQGDISISGGLASELGLSDQPVRTSVQDIDMTTV 291

Query: 273 -----MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
                 +S +   L  +  QRA LG  +  ++     L N    +D   S+    +    
Sbjct: 292 QGSQNAISVLDSALKYVDSQRADLGAKQNRLSHSINNLANIQENVDASNSRIKDTDFAKE 351

Query: 328 HAQLSTLINKIEMSYMITTKLQKL 351
             Q++      +    I  + ++L
Sbjct: 352 TTQMTKAQILQQAGTSILAQAKQL 375


>gi|322504904|emb|CBZ14691.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 727

 Score = 35.8 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 93/311 (29%), Gaps = 30/311 (9%)

Query: 49  VTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNN 108
                              ++S  + R+S+ Q  +S ++  V      L+  +       
Sbjct: 251 TCQAASHNTNPAVAGTFASASSTHSPRISSEQVKISPLRADVATASQSLLQSVSNNGAQL 310

Query: 109 KFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDS-LAKKSFDQMLQ 167
               +A        S V                         + +K+S  AK       Q
Sbjct: 311 GLTTDAANNAAVIGSLVDAK--------------------TPWVSKNSEGAKSVPSSTPQ 350

Query: 168 GFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIK 227
           G       +  A        MN   +     +L     +         + SD +      
Sbjct: 351 GMSTSALPAAAAPFPHGCVGMNRNHVGAAGDRLVASPRNGSAMQQAARSGSDPHATKAAD 410

Query: 228 DTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQ 287
           ++E  D +       +R +M  ++ G    + +  D  +  +       + +G +G  E+
Sbjct: 411 ESETADEATTPKTAMLRSVMPWSLQGAAEWASS-DDAKKASVGGNSDYALSRGTTGKEEE 469

Query: 288 RAVLGISEKN-------INEERVFLQ-NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIE 339
                +S+          +     LQ   +   D  I   +  +   + A ++++++  +
Sbjct: 470 LGASHVSQLIAYRDMFVADPANQLLQSAPSKNADMSIVNMLLADPQQSDAAMTSVVSTGQ 529

Query: 340 MSYMITTKLQK 350
           ++   TT+L K
Sbjct: 530 LALPTTTELPK 540


>gi|323139668|ref|ZP_08074710.1| flagellin domain protein [Methylocystis sp. ATCC 49242]
 gi|322395100|gb|EFX97659.1| flagellin domain protein [Methylocystis sp. ATCC 49242]
          Length = 295

 Score = 35.8 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 79/263 (30%), Gaps = 10/263 (3%)

Query: 72  VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT 131
             + L  +Q+ L++ QK +   +          T       +    +    +     +  
Sbjct: 13  ALQSLRNTQSALNTTQKEISTGLKISSAAENAST--WAIAESMKSDKGVLSTISDSLSGA 70

Query: 132 DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQ-GFLEENSKSLLAGQHLEVSSMNA 190
                  S +N +   +    +  +  K +  Q  Q G  +    + L     ++SS+ +
Sbjct: 71  K------SVLNVATAAVKSAISVMNDIKNAVAQAQQPGADQAKILTSLQQLGSQLSSVVS 124

Query: 191 QQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVA 250
                 +   +   +    +  +++N               +    N    GI +     
Sbjct: 125 SATFTGLNVTDGSLTSPVSFIASYNNGGGTAASVVGTIDLTVTDLINTGGTGILEAAQAT 184

Query: 251 -VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKN 309
                   +               LS   + ++ +    A +G +   ++++  F+    
Sbjct: 185 GSTAATDFTGLTAADLAAATIADTLSNADKAIADLTTYAAEIGATVARVSQQNEFIDTMK 244

Query: 310 NIIDTYISKSIGVEQHTAHAQLS 332
           + + T +S  +  + + A  +L 
Sbjct: 245 DALTTGVSSLVDADMNEASTRLQ 267


>gi|28897562|ref|NP_797167.1| flagellin [Vibrio parahaemolyticus RIMD 2210633]
 gi|153840000|ref|ZP_01992667.1| polar flagellin C [Vibrio parahaemolyticus AQ3810]
 gi|260364619|ref|ZP_05777221.1| A-type flagellin [Vibrio parahaemolyticus K5030]
 gi|260878276|ref|ZP_05890631.1| A-type flagellin [Vibrio parahaemolyticus AN-5034]
 gi|260898106|ref|ZP_05906602.1| A-type flagellin [Vibrio parahaemolyticus Peru-466]
 gi|260901962|ref|ZP_05910357.1| A-type flagellin [Vibrio parahaemolyticus AQ4037]
 gi|29611967|sp|Q56712|FLAC_VIBPA RecName: Full=Polar flagellin C
 gi|28805774|dbj|BAC59051.1| polar flagellin FlaC [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746460|gb|EDM57469.1| polar flagellin C [Vibrio parahaemolyticus AQ3810]
 gi|308086103|gb|EFO35798.1| A-type flagellin [Vibrio parahaemolyticus Peru-466]
 gi|308090162|gb|EFO39857.1| A-type flagellin [Vibrio parahaemolyticus AN-5034]
 gi|308106764|gb|EFO44304.1| A-type flagellin [Vibrio parahaemolyticus AQ4037]
 gi|308115106|gb|EFO52646.1| A-type flagellin [Vibrio parahaemolyticus K5030]
 gi|328473445|gb|EGF44293.1| flagellin [Vibrio parahaemolyticus 10329]
          Length = 384

 Score = 35.8 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 112/384 (29%), Gaps = 52/384 (13%)

Query: 10  SIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSN 69
           ++    N+      +   K   E+ T            R++S  +    K+  A    SN
Sbjct: 2   AVTVSTNVSAMTAQRYLNKATNELNTSM---------ERLSSGHKINSAKDDAAGLQISN 52

Query: 70  SLVTKR-------------LSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGM 116
            L  +              +S +Q    +M +    M     + ++     N       +
Sbjct: 53  RLTAQSRGLDVAMRNANDGISIAQTAEGAMNEATSVMQRMRDLAIQSSNGTNSPAERQAI 112

Query: 117 LRDSYESFVTFAN-----MTDEGQYL----FS------GINSSEKPLNGYFTKDSLAKKS 161
             +S  + V   N      +  G+ L    F       G +S E  + G  +  +   + 
Sbjct: 113 NEESM-ALVDELNRIAETTSFGGRRLLNGSFGEAAFQIGASSGEAMIMGLTSIRADDTRM 171

Query: 162 FDQMLQGFLE-------ENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNW 214
                   +        + +K+ L      +       + D    +  K  DD      +
Sbjct: 172 GGVTFFSEVGKGKDWGVDPTKADLKITLPGMGEDEDGNVDDLEININAKAGDDIEELATY 231

Query: 215 SNASDHNIKYRIKDTEGIDVSAN-VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKK- 272
            N     I   + +   + +     N++G   I            + +    +++     
Sbjct: 232 INGQSDMINASVSEDGKLQIFVAHPNVQGDISISGGLASELGLSDEPVRTSVQDIDMTTV 291

Query: 273 -----MLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327
                 +S +   L  +  QRA LG  +  ++     L N    +D   S+    +    
Sbjct: 292 QGSQNAISVLDSALKYVDSQRADLGAKQNRLSHSINNLANIQENVDASNSRIKDTDFAKE 351

Query: 328 HAQLSTLINKIEMSYMITTKLQKL 351
             Q++      +    I  + ++L
Sbjct: 352 TTQMTKAQILQQAGTSILAQAKQL 375


>gi|221056438|ref|XP_002259357.1| protein phosphatase [Plasmodium knowlesi strain H]
 gi|193809428|emb|CAQ40130.1| protein phosphatase, putative [Plasmodium knowlesi strain H]
          Length = 977

 Score = 35.8 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 13/164 (7%), Positives = 43/164 (26%), Gaps = 2/164 (1%)

Query: 81  AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSG 140
           +  S+   + ++            +++     +      +        + +   + + S 
Sbjct: 455 SAESAKAPVAENAESTATEATPSTSESMATEASPSTSTPAATEATPSTSASTATEAIPST 514

Query: 141 INSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200
             S+        +  +  + +         E    +  +       S +A   T+     
Sbjct: 515 SASTATEATPSTSASTATEATPSTSASTATEATPSTSASTATEATPSTSASTATEATPST 574

Query: 201 EDKFSDDEYWANNWSNASD-HNIKYRIKDTE-GIDVSANVNMRG 242
               + +   + + S A++          TE     S + N   
Sbjct: 575 SASTATEATPSTSASTATEATPSTSASTATEATPSTSTSANEGA 618


>gi|313835332|gb|EFS73046.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL037PA2]
 gi|314969983|gb|EFT14081.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Propionibacterium acnes HL037PA3]
          Length = 869

 Score = 35.8 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 4/120 (3%)

Query: 164 QMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIK 223
               G LE  + S+L G+    S ++       +     +   D     NW   SD  ++
Sbjct: 510 AAESGLLESVAGSVLHGEDAVESLLSKATEAFGLSG--ARLMSDGRVVANWGTTSDQVME 567

Query: 224 YRIKDTEGIDVSANVNMRGIRDIMF--VAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL 281
           +RI D   ++          R +M    A +GT    + L + A+ V        V+  L
Sbjct: 568 HRIDDHTVLEFHGPEPDASERRLMLVIAAQVGTAMEQRQLEETAKAVEPLAATDRVRTAL 627


>gi|117923389|ref|YP_864006.1| flagellin domain-containing protein [Magnetococcus sp. MC-1]
 gi|117607145|gb|ABK42600.1| flagellin domain protein [Magnetococcus sp. MC-1]
          Length = 377

 Score = 35.8 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 64/199 (32%), Gaps = 7/199 (3%)

Query: 152 FTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWA 211
             +++    S  Q+ +G L E   +L   + L V +++          L D+ S      
Sbjct: 170 SARNANDGISLVQVAEGALVETEAALQRMRELAVQAVSGTYTDSDRSDLNDEVSALISEI 229

Query: 212 NNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTK 271
              S  +  N    +  T   D+       G +  +  A  G   L  N T      L  
Sbjct: 230 TRISTQTTFNGAVLMSSTMTFDIQVGA-DVGQKITVSTAAAGASALGVNTTSITSVGLAS 288

Query: 272 KMLSTVQQGLSGIIEQRAVLGISEKNINEE---RVFLQNKNNIIDTYISKSIGVEQHTAH 328
             ++ +   ++ + + RAVLG+ +  +         L     +    I     V+     
Sbjct: 289 VAITKIDAAIARVSDMRAVLGVQQNRLEAAVHNLSSLCAHTEVARGRIMD---VDMAQET 345

Query: 329 AQLSTLINKIEMSYMITTK 347
           A L+      +    +  +
Sbjct: 346 ANLTKQSILQQTGAAMLAQ 364


>gi|291537706|emb|CBL10818.1| Flagellin and related hook-associated proteins [Roseburia
           intestinalis M50/1]
          Length = 541

 Score = 35.8 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 52/179 (29%), Gaps = 14/179 (7%)

Query: 150 GYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE-VSSMNAQQMTDFIK-QLEDKFSDD 207
                   A   FD  L G   +   +L A      VS +     T        D     
Sbjct: 341 DLEDILKTAGFDFDVKLSGNTPDEPNTLFATSGASSVSDITMGNATAGAGLGSTDAMWGQ 400

Query: 208 EYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARN 267
             + +  S A    I  +I   EG  +S +++       M    +G +    +L+     
Sbjct: 401 AGYDSVSSGAG---ITLQIGANEGQTMSFSIDD------MSARALGVDGNKVDLST---Q 448

Query: 268 VLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHT 326
              +K   T+   +  +  QR  +G  +  +      L        T  S+    +   
Sbjct: 449 SGAQKATDTIDAAIKKVSAQRGKMGAIQNRLEHTISNLDTAAENTQTAESRIRDTDMAE 507


>gi|291537844|emb|CBL10955.1| Flagellin and related hook-associated proteins [Roseburia
           intestinalis XB6B4]
          Length = 541

 Score = 35.8 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 61/204 (29%), Gaps = 14/204 (6%)

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           +  AN    G+Y        E            A   FD  L G   +   +L A     
Sbjct: 316 IDGANAVTAGEYTIHLAAGKEYTAEDLEDVLKTAGFDFDVKLSGNTPDEPNTLFATSG-- 373

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNW--SNASDHNIKYRIKDTEGIDVSANVNMRG 242
            S++    M           S D  W      S +S   I  +I   EG  +S +++   
Sbjct: 374 ASTVTDITMGA-GTTGAGLGSTDAMWGQAGYDSVSSGAGITLQIGANEGQTMSFSIDD-- 430

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
               M    +G +    +L+  A     +K   T+   +  +  QR  +G  +  +    
Sbjct: 431 ----MSARALGVDGNKVDLSTQAG---AQKATDTIDAAIKKVSAQRGRMGAIQNRLEHTI 483

Query: 303 VFLQNKNNIIDTYISKSIGVEQHT 326
             L        T  S+    +   
Sbjct: 484 SNLDTAAENTQTAESRIRDTDMAE 507


>gi|240146660|ref|ZP_04745261.1| flagellin [Roseburia intestinalis L1-82]
 gi|257201204|gb|EEU99488.1| flagellin [Roseburia intestinalis L1-82]
          Length = 541

 Score = 35.8 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 61/204 (29%), Gaps = 14/204 (6%)

Query: 125 VTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLE 184
           +  AN    G+Y        E            A   FD  L G   +   +L A     
Sbjct: 316 IDGANAVTAGEYTIHLAAGKEYTAEDLEDVLKTAGFDFDVKLSGNTPDEPNTLFATSG-- 373

Query: 185 VSSMNAQQMTDFIKQLEDKFSDDEYWANNW--SNASDHNIKYRIKDTEGIDVSANVNMRG 242
            S++    M           S D  W      S +S   I  +I   EG  +S +++   
Sbjct: 374 ASTVTDITMGA-GTAGAGLGSTDAMWGQAGYDSVSSGAGITLQIGANEGQTMSFSIDD-- 430

Query: 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEER 302
               M    +G +    +L+  A     +K   T+   +  +  QR  +G  +  +    
Sbjct: 431 ----MSARALGVDGNKVDLSTQAG---AQKATDTIDAAIKKVSAQRGRMGAIQNRLEHTI 483

Query: 303 VFLQNKNNIIDTYISKSIGVEQHT 326
             L        T  S+    +   
Sbjct: 484 SNLDTAAENTQTAESRIRDTDMAE 507


>gi|126728916|ref|ZP_01744731.1| flagellin protein [Sagittula stellata E-37]
 gi|126710846|gb|EBA09897.1| flagellin protein [Sagittula stellata E-37]
          Length = 431

 Score = 35.8 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 8/188 (4%)

Query: 4   TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIA 63
           + I T++         K +N+    +  ++ TG+  +      A        E +     
Sbjct: 2   SSILTNNGAIAALQTLKGINRQMGDVQTQISTGKKVNSARDNAAVWAISKAMESDVAGFK 61

Query: 64  ERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYES 123
           +   S SL    +S ++    ++  ++  +   +V   E   D +K   +   LRD   +
Sbjct: 62  KVSDSLSLGLATISVARQGAETVTDLLTQVKEKVVAAQEENVDRDKIQADISALRDQVAA 121

Query: 124 FVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHL 183
            V  A     GQY+    N+ +       +       S D+   G    + +        
Sbjct: 122 VVGAA--QFNGQYML--TNTDQTA----DSGGINVLASIDRSFDGVTSSDIRVNKQDLGT 173

Query: 184 EVSSMNAQ 191
             SS+ A 
Sbjct: 174 GASSIGAS 181


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.305    0.132    0.330 

Lambda     K      H
   0.267   0.0406    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,282,430,044
Number of Sequences: 14124377
Number of extensions: 178643367
Number of successful extensions: 535305
Number of sequences better than 10.0: 5315
Number of HSP's better than 10.0 without gapping: 1809
Number of HSP's successfully gapped in prelim test: 3774
Number of HSP's that attempted gapping in prelim test: 527522
Number of HSP's gapped (non-prelim): 9249
length of query: 357
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 217
effective length of database: 2,865,380,850
effective search space: 621787644450
effective search space used: 621787644450
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.4 bits)
S2: 82 (36.2 bits)