RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter asiaticus str. psy62] (357 letters) >gnl|CDD|168344 PRK06008, flgL, flagellar hook-associated protein FlgL; Validated. Length = 348 Score = 219 bits (560), Expect = 1e-57 Identities = 104/360 (28%), Positives = 179/360 (49%), Gaps = 15/360 (4%) Query: 1 MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60 MKT+ IST ++ + + +L + K E TG+ +D GL LG++ + +E + Sbjct: 1 MKTSFISTLALQNALRLTIAKLQAELSKAQTEATTGRYADVGLSLGSKTARSVSLRREYD 60 Query: 61 HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120 +A SNSLVT+RL+ +Q L + + Q + L L + A R + Sbjct: 61 RLASLTDSNSLVTQRLTATQTALGQIIEAAQSFLNDL---LAANSSAQTAATVAQSARSA 117 Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFL--EENSKSLL 178 S + N + G+YLF+GIN+ KPL Y S AK + D Q + + Sbjct: 118 LSSLTSTLNTSVNGEYLFAGINTDVKPLTDYGAPGSAAKTAVDTAFQTYFGFAPGDPA-- 175 Query: 179 AGQHLEVSSMNAQQMTDFIKQ-LEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237 VS++ A QM DF+ F D W+ NWS+ASD N+ RI TE + S + Sbjct: 176 ------VSNITAAQMQDFLDGTFAPLF-SDANWSANWSSASDTNMTSRISPTETAETSTS 228 Query: 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKN 297 N G R + V+ +E L+ A++ +T K ++ Q +SG+ +++ LG+++ Sbjct: 229 ANAEGFRKLAMAYVMVSELGDIGLSSEAQDTVTDKAITYTGQAISGLTTEQSQLGLAQSR 288 Query: 298 INEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357 + + L + +++ I GV+ + A +++ L ++E SY +T++LQ+LS++NYL Sbjct: 289 VTKANTRLDAQIKLLNGQILDLEGVDPYEASTRVNALQTQLETSYSLTSQLQQLSLVNYL 348 >gnl|CDD|180872 PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed. Length = 305 Score = 41.9 bits (99), Expect = 2e-04 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 15/157 (9%) Query: 6 ISTSSIFERMNILTKELNKDSVKLHEEMVTGQ-----SSDYGLQLGARVTSILEWEQEKN 60 IST++++ M ++L KL ++M TG+ S D + + +LE +E++ Sbjct: 3 ISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDD---PIAS--ARLLELSREQS 57 Query: 61 HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120 + ++ + + ++ L+ + HLS + +Q + LV G + A LR Sbjct: 58 NNSQYADNIANLSNSLNNQEGHLSGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSM 117 Query: 121 YESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDS 156 +S + AN D EG YLFSG S+ +P T D+ Sbjct: 118 LDSLLGLANAKDSEGNYLFSGTASNTQP----ITFDA 150 >gnl|CDD|181581 PRK08913, flgL, flagellar hook-associated protein FlgL; Validated. Length = 301 Score = 41.7 bits (98), Expect = 3e-04 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 10/135 (7%) Query: 225 RIKDTEGIDVSANVNMRGIRDIMFVA--VIGTEFLSKNLTDGARNVLTKKMLSTVQQGLS 282 R+ T+G+ + +M V + LS + A L + Sbjct: 175 RVSATQGVSYGVTADNSAFEQLMRALMLVANSSSLSSSTLSQA--------LDLASTAVD 226 Query: 283 GIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSY 342 + + ++ LG + + + +T +S GV+ AQLST ++ SY Sbjct: 227 DLGDVQSRLGNAASRLTAASSRQTEYKSFAETLLSDLTGVDVAAVTAQLSTYQTQLTASY 286 Query: 343 MITTKLQKLSILNYL 357 +K++ L++ +YL Sbjct: 287 SAISKMKSLNLASYL 301 >gnl|CDD|181571 PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed. Length = 404 Score = 37.2 bits (87), Expect = 0.006 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%) Query: 117 LRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDS 156 L+ + + AN D G YLF+G S +P F D+ Sbjct: 114 LQGLRDQLLNLANSKDGSGNYLFAGTQSGTQP----FAFDA 150 >gnl|CDD|129812 TIGR00729, TIGR00729, ribonuclease H, mammalian HI/archaeal HII subfamily. Archaeal members of this subfamily of RNase H are designated RNase HII and one has been shown to be active as a monomer. A member from Homo sapiens was characterized as RNase HI, large subunit. Length = 206 Score = 33.6 bits (77), Expect = 0.075 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 258 SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317 SK LT G R L K + + + VL I+ + I+ ER N+ N I+ + Sbjct: 39 SKKLTPGRREELFSK--------IRNKLGRYEVLKITPEEIDRERNINLNE-NEIEKFSK 89 Query: 318 KSIGVEQHTAHA 329 +I + + + Sbjct: 90 AAIILIEKPSEV 101 >gnl|CDD|79176 PRK12718, flgL, flagellar hook-associated protein FlgL; Provisional. Length = 510 Score = 31.7 bits (71), Expect = 0.32 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 13/149 (8%) Query: 6 ISTSSIFERMNILTKELNKDSV--KLHEEMVTGQS----SDYGLQLGARVTSILEWEQEK 59 +ST+ I++ N L LN+++ +L E++ +G+ +D L V Sbjct: 3 LSTALIYQ--NGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNS 60 Query: 60 NHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRD 119 N+ A R + + + +T L S+ K +Q+M+ +V G + L+ Sbjct: 61 NYDANRKQAEQALGAQTNT----LQSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKG 116 Query: 120 SYESFVTFANMTD-EGQYLFSGINSSEKP 147 + E V AN TD GQYLFSG +P Sbjct: 117 AREELVGLANATDGNGQYLFSGYKGFTQP 145 >gnl|CDD|181540 PRK08724, fliD, flagellar capping protein; Validated. Length = 673 Score = 31.4 bits (71), Expect = 0.39 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Query: 81 AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGM------LRDSYESFVTFAN 129 A LSS +++D + + + L+GKTD NK P G+ +R+ E FV N Sbjct: 449 AQLSSNNNVIEDAIEGVDLTLKGKTDKNKPPAEIGVEYDRQSVRNDIEQFVAAYN 503 >gnl|CDD|173155 PRK14692, PRK14692, lagellar hook-associated protein FlgL; Provisional. Length = 749 Score = 30.7 bits (69), Expect = 0.59 Identities = 13/29 (44%), Positives = 17/29 (58%) Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNG 150 ES V AN + GQYLF+G + KP + Sbjct: 119 ESIVQLANTSVNGQYLFAGSQVANKPFDS 147 >gnl|CDD|181222 PRK08073, flgL, flagellar hook-associated protein FlgL; Validated. Length = 287 Score = 29.9 bits (67), Expect = 1.1 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 11/105 (10%) Query: 51 SILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKF 110 S+ EQ + +A+ S +++ + +T S+ ++ Q ++ L G D + Sbjct: 55 SLANIEQMQKDVAD---SKNVLNQTENTLSGMSKSLTRVDQLVLQAL----NGTNDEKEL 107 Query: 111 PINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKD 155 + + V AN ++G+Y+F G ++ +KP FT+D Sbjct: 108 KAIGAEIDQILKQVVYLANTKEQGRYVFGGDSAEKKP----FTED 148 >gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like. Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546 Score = 29.6 bits (66), Expect = 1.4 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 20 KELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTS 79 +E +K++ E M + + + Q ILE EQ+ + ++ N V + Sbjct: 191 EEQHKEAQSSSESM-SAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDI 249 Query: 80 QAHLSSMQKIVQDMVGPLVILLE 102 +A L M+ ++ + + I Sbjct: 250 EAELERMKGELKQRLKKMTIQRR 272 >gnl|CDD|181415 PRK08412, flgL, flagellar hook-associated protein FlgL; Validated. Length = 827 Score = 27.5 bits (61), Expect = 5.8 Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 122 ESFVTFANMTDEGQYLFSGINSSEKPLNGYFT 153 E + AN + G++LFSG KP++ T Sbjct: 119 EHMINLANTSIGGEFLFSGSKVDTKPIDSNGT 150 >gnl|CDD|183088 PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional. Length = 459 Score = 27.0 bits (59), Expect = 8.2 Identities = 10/29 (34%), Positives = 14/29 (48%) Query: 188 MNAQQMTDFIKQLEDKFSDDEYWANNWSN 216 + MTD LE+ F DD Y W++ Sbjct: 425 LKEIVMTDIAPLLEEYFFDDPYKQQIWAD 453 >gnl|CDD|162917 TIGR02550, flagell_flgL, flagellar hook-associated protein 3. This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; members of the family vary between 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. Length = 306 Score = 26.5 bits (59), Expect = 9.6 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 117 LRDSYESFVTFANMTDE-GQYLFSGINSSEKPLN 149 ++ + V AN D G+Y+FSG + P + Sbjct: 113 IKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFS 146 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.314 0.129 0.348 Gapped Lambda K H 0.267 0.0686 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,362,532 Number of extensions: 330503 Number of successful extensions: 482 Number of sequences better than 10.0: 1 Number of HSP's gapped: 475 Number of HSP's successfully gapped: 21 Length of query: 357 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 263 Effective length of database: 3,963,321 Effective search space: 1042353423 Effective search space used: 1042353423 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 58 (26.2 bits)