RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780523|ref|YP_003064936.1| flagellar hook-associated
protein FlgL [Candidatus Liberibacter asiaticus str. psy62]
         (357 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 30.2 bits (68), Expect = 0.42
 Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 30/96 (31%)

Query: 44  QLGARVTSILEW-EQEKNHIAERL--HSNSLVTKRLSTSQAHL----SSMQKIVQDMVGP 96
           QL  R   I +W E E   +        +    + L      +     S  +  Q   G 
Sbjct: 32  QLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWG- 90

Query: 97  LVILLEGKTDNNKF--------PINAGM---LRDSY 121
                      N F        P+   +    +DSY
Sbjct: 91  -----------NDFYKRDPRIAPLRGALATYSKDSY 115


>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA
           processing, hydrolase, endonuclease; 2.85A {Escherichia
           coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A
           1sn8_A (L:127-208)
          Length = 82

 Score = 26.6 bits (59), Expect = 4.8
 Identities = 11/60 (18%), Positives = 22/60 (36%)

Query: 253 GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNII 312
               +S+ +    R  L + + S       G+I + A +G S + +  +  F       I
Sbjct: 16  RAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI 75


>2qne_A Putative methyltransferase; ZP_00558420.1, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MSE; 2.30A {Desulfitobacterium hafniense Y51}
           (A:114-181,A:366-471)
          Length = 174

 Score = 26.5 bits (59), Expect = 5.0
 Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 4/39 (10%)

Query: 111 PINAGMLR----DSYESFVTFANMTDEGQYLFSGINSSE 145
              AG+L+     SYE F+    +     +   G    E
Sbjct: 66  CFXAGILQYFXAXSYEKFIXDDEIAGXLLHYXKGYTFDE 104


>2zbi_A Flagellin homolog; flagellum, structural protein; 2.00A
           {Sphingomonas SP} (A:1-113,A:232-292)
          Length = 174

 Score = 26.0 bits (57), Expect = 7.2
 Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 75  RLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDE- 133
              T++  L  +   +Q +    V    G             +          A  T   
Sbjct: 20  LAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRVAEQTSFN 79

Query: 134 GQYLFSGINSSEKPLNG 150
           GQ L  G  +  +   G
Sbjct: 80  GQKLLDGSFNGVQFQIG 96


>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2,
           structural genomics, protein structure initiative; HET:
           MSE; 2.00A {Pseudomonas aeruginosa PAO1} (A:256-500)
          Length = 245

 Score = 25.9 bits (57), Expect = 7.6
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 74  KRLSTSQAHLSSMQKIVQDMVGPLVILLEG 103
           ++L+  QA L+ + +  +     LV + EG
Sbjct: 23  EQLAAEQARLAGLIRDKRFRQHSLVAVFEG 52


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,316,633
Number of extensions: 95790
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 6
Length of query: 357
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 268
Effective length of database: 1,947,404
Effective search space: 521904272
Effective search space used: 521904272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.1 bits)