RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780523|ref|YP_003064936.1| flagellar hook-associated
protein FlgL [Candidatus Liberibacter asiaticus str. psy62]
         (357 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 42/262 (16%), Positives = 77/262 (29%), Gaps = 86/262 (32%)

Query: 112 INAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLN------GYFTK--DSLAKKSFD 163
             A  L++ +         T+     F+  +    P        GY +   +      FD
Sbjct: 28  FIASQLQEQFNK--ILPEPTEG----FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81

Query: 164 QMLQGFLEENSKSLLAGQ--HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHN 221
           Q+L   L E     L G   H   + +  +  T  +K                       
Sbjct: 82  QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK----------------------- 118

Query: 222 IKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL 281
               +                I+     A        +     + + L       V +G 
Sbjct: 119 -TKEL----------------IK-NYITAR---IMAKRPFDKKSNSAL----FRAVGEGN 153

Query: 282 SGIIEQRAVLGISEKNIN---EERVFLQNKNNIIDTYISKSIGVEQ--HTAHAQLSTLI- 335
           + ++   A+ G  + N +   EE   L+   ++  TY    + V      +   LS LI 
Sbjct: 154 AQLV---AIFG-GQGNTDDYFEE---LR---DLYQTY--HVL-VGDLIKFSAETLSELIR 200

Query: 336 NKIEMSYMITTKLQKLSILNYL 357
             ++   + T   Q L+IL +L
Sbjct: 201 TTLDAEKVFT---QGLNILEWL 219



 Score = 36.8 bits (85), Expect = 0.007
 Identities = 27/189 (14%), Positives = 52/189 (27%), Gaps = 83/189 (43%)

Query: 178 LAGQHLEVS-------SMNAQQMTD-FIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDT 229
           L+   LE            A Q+ + F K L +  ++          A+D          
Sbjct: 11  LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP-TE--------GFAAD---------- 51

Query: 230 EGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289
              + +    +           +G  ++S  +                 Q L        
Sbjct: 52  --DEPTTPAEL-------VGKFLG--YVSSLVEPSKV--------GQFDQVL------NL 86

Query: 290 VLGISEKNINE-ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348
            L        E E  +L+  N+I                HA  + L+ + +     TT +
Sbjct: 87  CL-------TEFENCYLEG-NDI----------------HALAAKLLQEND-----TTLV 117

Query: 349 QKLSIL-NY 356
           +   ++ NY
Sbjct: 118 KTKELIKNY 126



 Score = 34.1 bits (78), Expect = 0.050
 Identities = 48/264 (18%), Positives = 90/264 (34%), Gaps = 86/264 (32%)

Query: 151 YFTKDSLAKKSFDQMLQGFL----EENSKSLLA---GQ--------HL-EVSSMNAQQMT 194
           Y T   +AK+ FD+     L     E +  L+A   GQ         L ++       + 
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185

Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR------DIMF 248
           D IK   +         +     +    K     T+G+++     +  +       D  +
Sbjct: 186 DLIKFSAETL-------SELIRTTLDAEKVF---TQGLNI-----LEWLENPSNTPDKDY 230

Query: 249 VA-------VIGTEFLSKNLTDGARNVLTKKML----STVQQGLS-------GIIEQRAV 290
           +        +IG       +   A  V+T K+L      ++  L        G++   AV
Sbjct: 231 LLSIPISCPLIG-------VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT--AV 281

Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQL----STLINKIEM-----S 341
             I+E +  E   F  +    I   +   IGV  + A+       S L + +E      S
Sbjct: 282 -AIAETDSWES--FFVSVRKAIT--VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336

Query: 342 YMIT------TKLQK-LSILN-YL 357
            M++       ++Q  ++  N +L
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHL 360



 Score = 33.8 bits (77), Expect = 0.071
 Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 125/278 (44%)

Query: 2   KTTGISTSSIFERMNILTKELNKDSVKLHEEMVT--GQ--SSDY--GLQ----------- 44
                S S++F  +        + + +L   +    GQ  + DY   L+           
Sbjct: 136 PFDKKSNSALFRAVG-------EGNAQL---VAIFGGQGNTDDYFEELRDLYQTYHVLVG 185

Query: 45  -----LGARVTSILEWEQEKNHIAERLHSNSL-VTKRLST-----SQAHLS----SMQKI 89
                    ++ ++    +    AE++ +  L + + L        + +L     S    
Sbjct: 186 DLIKFSAETLSELIRTTLD----AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC--- 238

Query: 90  VQDMVGPLVILLE-----------GKTDNNKFPINAGMLR-------------------- 118
                 PL+ +++           G T     P   G LR                    
Sbjct: 239 ------PLIGVIQLAHYVVTAKLLGFT-----P---GELRSYLKGATGHSQGLVTAVAIA 284

Query: 119 --DSYESFVTFANMTDEGQYLFS-GINSSEKPLNGYFTKDSLAKK----SFDQ------- 164
             DS+ESF  F ++      LF  G+   E      +   SL       S +        
Sbjct: 285 ETDSWESF--FVSVRKAITVLFFIGVRCYE-----AYPNTSLPPSILEDSLENNEGVPSP 337

Query: 165 ML----------QGFLEENSKSLLAGQHLEVSSMNAQQ 192
           ML          Q ++ + +  L AG+ +E+S +N  +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375


>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural
           genomics, PSI-2, protein structure initiative; HET: MSE;
           2.05A {Porphyromonas gingivalis}
          Length = 434

 Score = 31.6 bits (71), Expect = 0.29
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNI 222
           + +  G +    K+L  G+ +    M ++ +  FI +  D       + N+    + ++ 
Sbjct: 250 ELVRSGVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDN 309

Query: 223 KYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKK----MLSTVQ 278
              I     ID+   V    I    F    G      +   GA      K    + ST +
Sbjct: 310 MVSINSCIEIDLMGQVVSECIGSKQFSGTGG----QVDYVRGAAWSKNGKSIMAIPSTAK 365

Query: 279 QGLSGII 285
            G +  I
Sbjct: 366 NGTASRI 372


>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG,
           structural genomics, midwest center for structural
           genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
          Length = 295

 Score = 29.2 bits (64), Expect = 1.4
 Identities = 5/49 (10%), Positives = 19/49 (38%)

Query: 161 SFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY 209
           S D + +G  +  ++       +++  MN++     +  +  +   +  
Sbjct: 15  SLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGN 63


>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural
           genomics, PSI-2, protein structure initiative; 2.80A
           {Porphyromonas gingivalis W83}
          Length = 439

 Score = 29.2 bits (65), Expect = 1.4
 Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 8/123 (6%)

Query: 167 QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI 226
           +G +    K+L   + +      ++++ DF+            + NN      ++    I
Sbjct: 251 KGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSI 310

Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKK----MLSTVQQGLS 282
                +D+        I    F    G      +   GA+            ST ++G  
Sbjct: 311 NSCLEMDLMGQAASESIGYEQFSGSGG----QVDFLRGAKRSKGGISIMAFPSTAKKGTE 366

Query: 283 GII 285
             I
Sbjct: 367 SRI 369


>1cvu_A Prostaglandin H2 synthase-2; COX-2, cyclooxygenase, prostaglandin,
           arachidonate, endoperoxide, oxidoreductase; HET: NAG MAN
           BOG ACD; 2.40A {Mus musculus} SCOP: a.93.1.2 g.3.11.1
           PDB: 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 1pxx_A*
           1ddx_A*
          Length = 552

 Score = 27.9 bits (62), Expect = 3.8
 Identities = 22/167 (13%), Positives = 47/167 (28%), Gaps = 38/167 (22%)

Query: 55  WEQEKNHIAERLHSNSL---------VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT 105
           W +E   + + L               +K +   +       KIV +     +    G  
Sbjct: 274 WLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGE-----TIKIVIEDYVQHLS---GYH 325

Query: 106 DNNKFPINAGMLRDSYESFVTFAN-MTDEGQYLFSG---------INSSEKPLNGYFTKD 155
              KF          +     + N +  E   L+           I   E     +   +
Sbjct: 326 FKLKFD-----PELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNN 380

Query: 156 S-LAKKSFDQMLQGFLEENSKSLLAGQH-----LEVSSMNAQQMTDF 196
           S L +    Q ++ F  + +  +  G++       V+  +  Q  + 
Sbjct: 381 SILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREM 427


>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
           insolens} SCOP: c.47.1.2
          Length = 133

 Score = 26.4 bits (58), Expect = 9.6
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 9/99 (9%)

Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197
           +S   S+  PL   F + +  +K     L+   E     +         +++A     F 
Sbjct: 16  YSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVIN------FGTIDA---KAFG 66

Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSA 236
               +     + +          N K+     + I   A
Sbjct: 67  AHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEA 105


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,689,233
Number of extensions: 116076
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 14
Length of query: 357
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 264
Effective length of database: 3,438,538
Effective search space: 907774032
Effective search space used: 907774032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.0 bits)