RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter asiaticus str. psy62] (357 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 40.3 bits (94), Expect = 6e-04 Identities = 42/262 (16%), Positives = 77/262 (29%), Gaps = 86/262 (32%) Query: 112 INAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLN------GYFTK--DSLAKKSFD 163 A L++ + T+ F+ + P GY + + FD Sbjct: 28 FIASQLQEQFNK--ILPEPTEG----FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81 Query: 164 QMLQGFLEENSKSLLAGQ--HLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHN 221 Q+L L E L G H + + + T +K Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK----------------------- 118 Query: 222 IKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL 281 + I+ A + + + L V +G Sbjct: 119 -TKEL----------------IK-NYITAR---IMAKRPFDKKSNSAL----FRAVGEGN 153 Query: 282 SGIIEQRAVLGISEKNIN---EERVFLQNKNNIIDTYISKSIGVEQ--HTAHAQLSTLI- 335 + ++ A+ G + N + EE L+ ++ TY + V + LS LI Sbjct: 154 AQLV---AIFG-GQGNTDDYFEE---LR---DLYQTY--HVL-VGDLIKFSAETLSELIR 200 Query: 336 NKIEMSYMITTKLQKLSILNYL 357 ++ + T Q L+IL +L Sbjct: 201 TTLDAEKVFT---QGLNILEWL 219 Score = 36.8 bits (85), Expect = 0.007 Identities = 27/189 (14%), Positives = 52/189 (27%), Gaps = 83/189 (43%) Query: 178 LAGQHLEVS-------SMNAQQMTD-FIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDT 229 L+ LE A Q+ + F K L + ++ A+D Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP-TE--------GFAAD---------- 51 Query: 230 EGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRA 289 + + + +G ++S + Q L Sbjct: 52 --DEPTTPAEL-------VGKFLG--YVSSLVEPSKV--------GQFDQVL------NL 86 Query: 290 VLGISEKNINE-ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKL 348 L E E +L+ N+I HA + L+ + + TT + Sbjct: 87 CL-------TEFENCYLEG-NDI----------------HALAAKLLQEND-----TTLV 117 Query: 349 QKLSIL-NY 356 + ++ NY Sbjct: 118 KTKELIKNY 126 Score = 34.1 bits (78), Expect = 0.050 Identities = 48/264 (18%), Positives = 90/264 (34%), Gaps = 86/264 (32%) Query: 151 YFTKDSLAKKSFDQMLQGFL----EENSKSLLA---GQ--------HL-EVSSMNAQQMT 194 Y T +AK+ FD+ L E + L+A GQ L ++ + Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185 Query: 195 DFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIR------DIMF 248 D IK + + + K T+G+++ + + D + Sbjct: 186 DLIKFSAETL-------SELIRTTLDAEKVF---TQGLNI-----LEWLENPSNTPDKDY 230 Query: 249 VA-------VIGTEFLSKNLTDGARNVLTKKML----STVQQGLS-------GIIEQRAV 290 + +IG + A V+T K+L ++ L G++ AV Sbjct: 231 LLSIPISCPLIG-------VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT--AV 281 Query: 291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQL----STLINKIEM-----S 341 I+E + E F + I + IGV + A+ S L + +E S Sbjct: 282 -AIAETDSWES--FFVSVRKAIT--VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336 Query: 342 YMIT------TKLQK-LSILN-YL 357 M++ ++Q ++ N +L Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHL 360 Score = 33.8 bits (77), Expect = 0.071 Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 125/278 (44%) Query: 2 KTTGISTSSIFERMNILTKELNKDSVKLHEEMVT--GQ--SSDY--GLQ----------- 44 S S++F + + + +L + GQ + DY L+ Sbjct: 136 PFDKKSNSALFRAVG-------EGNAQL---VAIFGGQGNTDDYFEELRDLYQTYHVLVG 185 Query: 45 -----LGARVTSILEWEQEKNHIAERLHSNSL-VTKRLST-----SQAHLS----SMQKI 89 ++ ++ + AE++ + L + + L + +L S Sbjct: 186 DLIKFSAETLSELIRTTLD----AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC--- 238 Query: 90 VQDMVGPLVILLE-----------GKTDNNKFPINAGMLR-------------------- 118 PL+ +++ G T P G LR Sbjct: 239 ------PLIGVIQLAHYVVTAKLLGFT-----P---GELRSYLKGATGHSQGLVTAVAIA 284 Query: 119 --DSYESFVTFANMTDEGQYLFS-GINSSEKPLNGYFTKDSLAKK----SFDQ------- 164 DS+ESF F ++ LF G+ E + SL S + Sbjct: 285 ETDSWESF--FVSVRKAITVLFFIGVRCYE-----AYPNTSLPPSILEDSLENNEGVPSP 337 Query: 165 ML----------QGFLEENSKSLLAGQHLEVSSMNAQQ 192 ML Q ++ + + L AG+ +E+S +N + Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375 >3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} Length = 434 Score = 31.6 bits (71), Expect = 0.29 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 8/127 (6%) Query: 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNI 222 + + G + K+L G+ + M ++ + FI + D + N+ + ++ Sbjct: 250 ELVRSGVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDN 309 Query: 223 KYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKK----MLSTVQ 278 I ID+ V I F G + GA K + ST + Sbjct: 310 MVSINSCIEIDLMGQVVSECIGSKQFSGTGG----QVDYVRGAAWSKNGKSIMAIPSTAK 365 Query: 279 QGLSGII 285 G + I Sbjct: 366 NGTASRI 372 >3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} Length = 295 Score = 29.2 bits (64), Expect = 1.4 Identities = 5/49 (10%), Positives = 19/49 (38%) Query: 161 SFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEY 209 S D + +G + ++ +++ MN++ + + + + Sbjct: 15 SLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGN 63 >3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Porphyromonas gingivalis W83} Length = 439 Score = 29.2 bits (65), Expect = 1.4 Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 8/123 (6%) Query: 167 QGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRI 226 +G + K+L + + ++++ DF+ + NN ++ I Sbjct: 251 KGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSI 310 Query: 227 KDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKK----MLSTVQQGLS 282 +D+ I F G + GA+ ST ++G Sbjct: 311 NSCLEMDLMGQAASESIGYEQFSGSGG----QVDFLRGAKRSKGGISIMAFPSTAKKGTE 366 Query: 283 GII 285 I Sbjct: 367 SRI 369 >1cvu_A Prostaglandin H2 synthase-2; COX-2, cyclooxygenase, prostaglandin, arachidonate, endoperoxide, oxidoreductase; HET: NAG MAN BOG ACD; 2.40A {Mus musculus} SCOP: a.93.1.2 g.3.11.1 PDB: 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 1pxx_A* 1ddx_A* Length = 552 Score = 27.9 bits (62), Expect = 3.8 Identities = 22/167 (13%), Positives = 47/167 (28%), Gaps = 38/167 (22%) Query: 55 WEQEKNHIAERLHSNSL---------VTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKT 105 W +E + + L +K + + KIV + + G Sbjct: 274 WLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGE-----TIKIVIEDYVQHLS---GYH 325 Query: 106 DNNKFPINAGMLRDSYESFVTFAN-MTDEGQYLFSG---------INSSEKPLNGYFTKD 155 KF + + N + E L+ I E + + Sbjct: 326 FKLKFD-----PELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNN 380 Query: 156 S-LAKKSFDQMLQGFLEENSKSLLAGQH-----LEVSSMNAQQMTDF 196 S L + Q ++ F + + + G++ V+ + Q + Sbjct: 381 SILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREM 427 >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 Length = 133 Score = 26.4 bits (58), Expect = 9.6 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 9/99 (9%) Query: 138 FSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFI 197 +S S+ PL F + + +K L+ E + +++A F Sbjct: 16 YSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVIN------FGTIDA---KAFG 66 Query: 198 KQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSA 236 + + + N K+ + I A Sbjct: 67 AHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEA 105 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.129 0.348 Gapped Lambda K H 0.267 0.0598 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,689,233 Number of extensions: 116076 Number of successful extensions: 217 Number of sequences better than 10.0: 1 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 14 Length of query: 357 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 264 Effective length of database: 3,438,538 Effective search space: 907774032 Effective search space used: 907774032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 57 (26.0 bits)