BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter asiaticus str. psy62] (357 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter asiaticus str. psy62] Length = 357 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/357 (100%), Positives = 357/357 (100%) Query: 1 MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60 MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN Sbjct: 1 MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKN 60 Query: 61 HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120 HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS Sbjct: 61 HIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDS 120 Query: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG Sbjct: 121 YESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAG 180 Query: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM Sbjct: 181 QHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM 240 Query: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE Sbjct: 241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE 300 Query: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL Sbjct: 301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357 >gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%) Query: 22 LNKDSVKLHEEMVT---------GQSSDYG--LQLGARVTSILEWEQEKNHIAERLHS 68 LN ++V +H E+ S +G LQL VTS LE E++ HI L + Sbjct: 807 LNPEAVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLET 864 >gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 482 Score = 23.5 bits (49), Expect = 5.7, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 7/56 (12%) Query: 256 FLSKN------LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305 F +KN ++D A ++LTK Q L I+ RAV+G+ + ++ E+R L Sbjct: 330 FCTKNAIKQISISDKALSLLTKYPWIDNVQELKNIL-LRAVIGLKDSHLTEDRFVL 384 >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 23.1 bits (48), Expect = 8.5, Method: Compositional matrix adjust. Identities = 9/29 (31%), Positives = 19/29 (65%) Query: 264 GARNVLTKKMLSTVQQGLSGIIEQRAVLG 292 G R+ LT+++ S V++ ++R+V+G Sbjct: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIG 319 >gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 449 Score = 22.7 bits (47), Expect = 8.6, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 18/125 (14%) Query: 221 NIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFL-SKNLTDGARNVLTKKMLSTVQQ 279 +I+ R +GI +S N +R I D + ++ + F + + G V+T K Sbjct: 303 DIRVRFSKIKGITISDN-RLRSIVDEYPILLVISAFAEGETIIKGLAEVMTSKQ------ 355 Query: 280 GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIE 339 SGIIE + NI ER + ++ + G+ T H S ++ Sbjct: 356 -FSGIIECFNI-----NNIQYER----EGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVA 405 Query: 340 MSYMI 344 MS+++ Sbjct: 406 MSFLV 410 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.129 0.348 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 215,250 Number of Sequences: 1233 Number of extensions: 8913 Number of successful extensions: 20 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 9 length of query: 357 length of database: 328,796 effective HSP length: 75 effective length of query: 282 effective length of database: 236,321 effective search space: 66642522 effective search space used: 66642522 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 39 (19.6 bits)