HHsearch alignment for GI: 254780524 and conserved domain: COG1558

>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion].
Probab=98.92  E-value=2.5e-09  Score=74.37  Aligned_cols=46  Identities=24%  Similarity=0.304  Sum_probs=42.7

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8876628888999999999999999999999999999999987409
Q gi|254780524|r  435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK  480 (480)
Q Consensus       435 ~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R  480 (480)
T Consensus        92 GYV~~PNVn~v~EM~dmisAsRsYeANv~v~~~~K~m~~~tL~i~~  137 (137)
T COG1558          92 GYVKMPNVNVVIEMVDMISASRSYEANVEVLNTAKSMMQKTLELGQ  137 (137)
T ss_pred             CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             7556587658999999999999899999999999999999997519