HHsearch alignment for GI: 254780524 and conserved domain: COG1558

>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion].

Probab=98.69  E-value=2.5e-08  Score=68.25  Aligned_cols=59  Identities=29%  Similarity=0.389  Sum_probs=49.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CEEEEEEEEEC---------CCCEEEEEEEEEH
Q ss_conf             91358899999999999998678744202578998------12679998604---------6606998998720
Q gi|254780524|r    1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS---------PENVTVVTQRSEN   59 (480)
Q Consensus         1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~G------yk~~~~~f~~~---------~~g~~~~~~~~~~   59 (480)
T Consensus         1 msl~~~~niagS~l~AQ~~RmnvissNiANa~St~~~~g~pYrrk~vvF~~~~~~~~~~~~~~~VkV~~I~eD~   74 (137)
T COG1558           1 MSLFSIFNIAGSALSAQSLRLNVISSNIANADSTRTPDGGPYRRKQVVFSAELFAPTGATGGAGVKVSKIVEDP   74 (137)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECC
T ss_conf             92165652554777888999899876430354456899984375456765513454445788635898876069