HHsearch alignment for GI: 254780524 and conserved domain: PRK05681
>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed.
Probab=99.17 E-value=3.5e-11 Score=85.85 Aligned_cols=58 Identities=31% Similarity=0.367 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CEEEEEEEEEC----------CCCEEEEEEEEE
Q ss_conf 91358899999999999998678744202578998------12679998604----------660699899872
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS----------PENVTVVTQRSE 58 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~G------yk~~~~~f~~~----------~~g~~~~~~~~~ 58 (480)
T Consensus 1 M~~~~~~~ia~sgl~aq~~rl~~~a~NiAN~~tt~t~~g~pYr~k~vvf~~~~~~~~~~~~~~~gV~v~~i~~d 74 (139)
T PRK05681 1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAGPDGDPYRRKQVVFAAFGSAELDRGQGTGGVKVAKIVED 74 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECC
T ss_conf 95388899999999999999999998553267778999987643124553033100024678776588777438