HHsearch alignment for GI: 254780524 and conserved domain: PRK05682

>PRK05682 flgE flagellar hook protein FlgE; Validated.
Probab=100.00  E-value=0  Score=348.06  Aligned_cols=397  Identities=13%  Similarity=0.065  Sum_probs=217.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-------------CCCEEEEEEEEEHHHHHHHHHHHHHH
Q ss_conf             89999999999999867874420257899812679998604-------------66069989987206887888775444
Q gi|254780524|r    6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVTQRSENKNMFDKVLHAHSS   72 (480)
Q Consensus         6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~   72 (480)
T Consensus         2 sl~tgvSGl~a~~~~l~visnNiAN~nT~GyK~~~~~F~~~~~~~~~~~~~~~~g~Gv~~~~~~~---~~~qG~~~~T~~   78 (414)
T PRK05682          2 SFNTGVSGLNAASNDLDVIGNNIANANTTGFKESRAEFADLYANSSSSNSGSQVGLGVKTAGVAQ---QFTQGTITSTGN   78 (414)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEE---ECCCCCEEECCC
T ss_conf             58899999999986016776778767753008775516786521256788874344178515887---637778577798


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             55678878789988865126777776401136677766876413867530011221012222221000224565665432
Q gi|254780524|r   73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA  152 (480)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (480)
T Consensus        79 ~~D~ai~G~GfF~v~-------~~~~~~yTR~G~F~~d~~G~Lv~~~G~~l~G~~~d~~~~~~~~~~~--~~l~~I~i~~  149 (414)
T PRK05682         79 SLDLAISGNGFFVVS-------SNGSVFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPNGVQN--ANLVPLQIPT  149 (414)
T ss_pred             CCEEEECCCCEEEEC-------CCCCEEEEECCCEEECCCCEEECCCCCEEEEEEECCCCCCCCCCCC--CCCCCEECCC
T ss_conf             321787377438864-------8995688855618885588198599998870450478875443345--7744346047


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCC
Q ss_conf             00011127878875434321011222345667652100121000010100201247873377114787069706103444
Q gi|254780524|r  153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP  232 (480)
Q Consensus       153 ~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~  232 (480)
T Consensus       150 ~~~~~~----------------------~Tt~~~~~~NL~~~~~~~~~~~~~~~~~~~~~~~t~~~vyDs~G~-------  200 (414)
T PRK05682        150 TALAPK----------------------ATTTVTFQGNLNSTAPVPAVTPFDPTDADTYNKSTSVTVYDSLGN-------  200 (414)
T ss_pred             CCCCCC----------------------CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-------
T ss_conf             667864----------------------310576630147777566666667778765320345998868997-------


Q ss_pred             CEEEEEECCCCCCCCCCCEEEECCC-CCCCCCCCCCCCC-CCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             1257630456667664321673365-5665677666765-3111011102331367787887655431001234557777
Q gi|254780524|r  233 RDINFEKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKG-KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN  310 (480)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (480)
T Consensus       201 -~~~l~~~f~k~~~n~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~F~~~------G~l~~--------~~~~~~~~~-  264 (414)
T PRK05682        201 -SHTLDVYFVKTGDNTWQVYVYDDGKAVDGPTTPTGTAGTTTAGTLTFDSN------GALTS--------FTIAINGGA-  264 (414)
T ss_pred             -EEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCC------CCCCC--------CCCCCCCCC-
T ss_conf             -48999999965898068999747876566655455556565421687688------72424--------666555677-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             7765432112234566665433222222333334-666210002456666555566654431024567664201111233
Q gi|254780524|r  311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQY-RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD  389 (480)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (480)
T Consensus       265 --~~~~~i~ld~----------------~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~dG~i~a~~sNG~~~~l~qi  326 (414)
T PRK05682        265 --TPAGTLTLDL----------------SGSTQQGTGFFNVSATTQDGYAPGTLTGVSIDDDGTVVATYSNGQTKPLGQI  326 (414)
T ss_pred             --CCCCEEEECC----------------CCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf             --8774068724----------------5640221466542211357722230466788899679999779957787688


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33456776528999987778876642111232234567999999988766288889999999999999999999999999
Q gi|254780524|r  390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD  469 (480)
Q Consensus       390 ~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~D  469 (480)
T Consensus       327 ~la~F~N~~gL~~~g~n~--y~~t~~SG~~~~g~~g~~g~G~i~~g~LE~SNVDla~E~t~mI~~QRaYqANskvItTsD  404 (414)
T PRK05682        327 ALANFANPDGLTKVGGNV--WSATAASGVALIGAAGSGGFGTIQSGALESSNVDLTTELVDMIVAQRNYQANAKTIKTQD  404 (414)
T ss_pred             EEEEECCHHHHHHHCCCE--EECCCCCCCCEECCCCCCCCEEEEECCEEHHCCCHHHHHHHHHHHHHHHHHHHEEEEEHH
T ss_conf             788626978977524971--764111587533689988712485364050017799999999999877467403456199


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999998740
Q gi|254780524|r  470 KMLQTLLEGV  479 (480)
Q Consensus       470 emlq~Lin~~  479 (480)
T Consensus       405 emLq~linlK  414 (414)
T PRK05682        405 QLLQTLVNLR  414 (414)
T ss_pred             HHHHHHHHCC
T ss_conf             9999997259