HHsearch alignment for GI: 254780524 and conserved domain: PRK05682
>PRK05682 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=348.06 Aligned_cols=397 Identities=13% Similarity=0.065 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-------------CCCEEEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 89999999999999867874420257899812679998604-------------66069989987206887888775444
Q gi|254780524|r 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVTQRSENKNMFDKVLHAHSS 72 (480)
Q Consensus 6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (480)
T Consensus 2 sl~tgvSGl~a~~~~l~visnNiAN~nT~GyK~~~~~F~~~~~~~~~~~~~~~~g~Gv~~~~~~~---~~~qG~~~~T~~ 78 (414)
T PRK05682 2 SFNTGVSGLNAASNDLDVIGNNIANANTTGFKESRAEFADLYANSSSSNSGSQVGLGVKTAGVAQ---QFTQGTITSTGN 78 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEE---ECCCCCEEECCC
T ss_conf 58899999999986016776778767753008775516786521256788874344178515887---637778577798
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 55678878789988865126777776401136677766876413867530011221012222221000224565665432
Q gi|254780524|r 73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 (480)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T Consensus 79 ~~D~ai~G~GfF~v~-------~~~~~~yTR~G~F~~d~~G~Lv~~~G~~l~G~~~d~~~~~~~~~~~--~~l~~I~i~~ 149 (414)
T PRK05682 79 SLDLAISGNGFFVVS-------SNGSVFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPNGVQN--ANLVPLQIPT 149 (414)
T ss_pred CCEEEECCCCEEEEC-------CCCCEEEEECCCEEECCCCEEECCCCCEEEEEEECCCCCCCCCCCC--CCCCCEECCC
T ss_conf 321787377438864-------8995688855618885588198599998870450478875443345--7744346047
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCC
Q ss_conf 00011127878875434321011222345667652100121000010100201247873377114787069706103444
Q gi|254780524|r 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 (480)
Q Consensus 153 ~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~ 232 (480)
T Consensus 150 ~~~~~~----------------------~Tt~~~~~~NL~~~~~~~~~~~~~~~~~~~~~~~t~~~vyDs~G~------- 200 (414)
T PRK05682 150 TALAPK----------------------ATTTVTFQGNLNSTAPVPAVTPFDPTDADTYNKSTSVTVYDSLGN------- 200 (414)
T ss_pred CCCCCC----------------------CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-------
T ss_conf 667864----------------------310576630147777566666667778765320345998868997-------
Q ss_pred CEEEEEECCCCCCCCCCCEEEECCC-CCCCCCCCCCCCC-CCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 1257630456667664321673365-5665677666765-3111011102331367787887655431001234557777
Q gi|254780524|r 233 RDINFEKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKG-KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310 (480)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (480)
T Consensus 201 -~~~l~~~f~k~~~n~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~F~~~------G~l~~--------~~~~~~~~~- 264 (414)
T PRK05682 201 -SHTLDVYFVKTGDNTWQVYVYDDGKAVDGPTTPTGTAGTTTAGTLTFDSN------GALTS--------FTIAINGGA- 264 (414)
T ss_pred -EEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCC------CCCCC--------CCCCCCCCC-
T ss_conf -48999999965898068999747876566655455556565421687688------72424--------666555677-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 7765432112234566665433222222333334-666210002456666555566654431024567664201111233
Q gi|254780524|r 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQY-RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
T Consensus 265 --~~~~~i~ld~----------------~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~dG~i~a~~sNG~~~~l~qi 326 (414)
T PRK05682 265 --TPAGTLTLDL----------------SGSTQQGTGFFNVSATTQDGYAPGTLTGVSIDDDGTVVATYSNGQTKPLGQI 326 (414)
T ss_pred --CCCCEEEECC----------------CCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf --8774068724----------------5640221466542211357722230466788899679999779957787688
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33456776528999987778876642111232234567999999988766288889999999999999999999999999
Q gi|254780524|r 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 (480)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~D 469 (480)
T Consensus 327 ~la~F~N~~gL~~~g~n~--y~~t~~SG~~~~g~~g~~g~G~i~~g~LE~SNVDla~E~t~mI~~QRaYqANskvItTsD 404 (414)
T PRK05682 327 ALANFANPDGLTKVGGNV--WSATAASGVALIGAAGSGGFGTIQSGALESSNVDLTTELVDMIVAQRNYQANAKTIKTQD 404 (414)
T ss_pred EEEEECCHHHHHHHCCCE--EECCCCCCCCEECCCCCCCCEEEEECCEEHHCCCHHHHHHHHHHHHHHHHHHHEEEEEHH
T ss_conf 788626978977524971--764111587533689988712485364050017799999999999877467403456199
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998740
Q gi|254780524|r 470 KMLQTLLEGV 479 (480)
Q Consensus 470 emlq~Lin~~ 479 (480)
T Consensus 405 emLq~linlK 414 (414)
T PRK05682 405 QLLQTLVNLR 414 (414)
T ss_pred HHHHHHHHCC
T ss_conf 9999997259