HHsearch alignment for GI: 254780524 and conserved domain: PRK06945
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00 E-value=0 Score=395.03 Aligned_cols=472 Identities=17% Similarity=0.185 Sum_probs=344.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC----------CCCEEEEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 5889999999999999867874420257899812679998604----------660699899872068878887754445
Q gi|254780524|r 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFDKVLHAHSSA 73 (480)
Q Consensus 4 ~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 73 (480)
T Consensus 2 ssll~ig~sgL~a~Q~~l~vtg~NIaN~nT~GYsRq~v~~~~~~~~~~~~g~~G~Gv~v~~I~R~~D~fl~~~~r~~~s~ 81 (649)
T PRK06945 2 SSLFNIGVSGLNAAQWGLTTTGHNISNAATPGYSRQRPVQAEASGQYTGSGYLGQGVNTVTVKRQYNQYLSAQLNNAQSQ 81 (649)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 50789999999999999998857565178988040166630457745578754577798369980428999999999888
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 56788787899888651267777764011366777668764138675300112210122222210002245656654320
Q gi|254780524|r 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153 (480)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T Consensus 82 ~~~~~~~~~~l~~ie~~f~e~--~~gl~~~l~~ff~a~~~la~~P~~~a~R~~~~~~a~~L~~~~~~~~~~l~~~~~~~~ 159 (649)
T PRK06945 82 GSSLSTYYSLVAQLNNYLADP--TAGLSPAITSFFTGLQNVANNPSDPSARQTALSNAQALASQFNAAGQQYDQLRQGVN 159 (649)
T ss_pred HHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 779999999999999984898--865789999999999999868787899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCC
Q ss_conf 001112787887543432101122234566-7652100121000010100201247873377114787069706103444
Q gi|254780524|r 154 KEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 (480)
Q Consensus 154 ~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~-~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~ 232 (480)
T Consensus 160 ~~i~~~V~~iN~l~~~Ia~LN~qI~~~~~~~g~~~NdL~DqRD~ll~eLS~~i~i~v~~-~~g~~~v~~~~G~~LV~g~~ 238 (649)
T PRK06945 160 TQLTSTVTQINSYTKQIAQLNQQIAKAESSQGQPPNDLLDQRDLAVSNLSKLVGVQVVQ-QDGGYNVFLGNGQPLVVGNK 238 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEE-CCCCEEEEECCCEEEEECCC
T ss_conf 99999999999999999999999999755689992689999999999998661959997-49968999659737884584
Q ss_pred CE-EEEEECCCCCCCCCC----CEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 12-576304566676643----2167336556656776667653111011102331367787887655431001234557
Q gi|254780524|r 233 RD-INFEKMNSYTVTSES----NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 (480)
Q Consensus 233 ~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (480)
T Consensus 239 ~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~l~gl~~~rd~~l~~~~~~ld~la~~l~~~~N~~~~~ 318 (649)
T PRK06945 239 SYQLATVASPSDPSRLTVVYKGIAGTVPPGPTQILPDSSLTGGTLGGLLAFRSQTLDPAQNQLGRLALSFAAQVNAQNAL 318 (649)
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 04677503788887226752144332468751003545557752134677654013677888889999999987777632
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-----C-------------C-----------------------------------CCCC
Q ss_conf 777776543211223456666-----5-------------4-----------------------------------3322
Q gi|254780524|r 308 AGNSENVPGLFIADGIKDLDN-----K-------------L-----------------------------------CQGI 334 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~-----~-------------~-----------------------------------~~~~ 334 (480)
T Consensus 319 G~d~~g~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 398 (649)
T PRK06945 319 GIDLNGNLGGDLFSVGGPTVYANTNNTGSATLSASIVNASQLTTSDYTLSYDGTNYTLTRRSDGSVVGTATSLPTTIDGL 398 (649)
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCEEECCCCCCCCCCCE
T ss_conf 76778876754203577622114577664048888503554555650688526622787547884110357776544655
Q ss_pred CCCCCCCCCCC-------------------CCCCCCCCCCC-----------------C--CCCCC--------------
Q ss_conf 22223333346-------------------66210002456-----------------6--66555--------------
Q gi|254780524|r 335 SETICVNPQYR-------------------SNPSFLRDGGS-----------------V--SKKFL-------------- 362 (480)
Q Consensus 335 ~~~~~~~~~~~-------------------~~~~~~~~~~~-----------------~--~~~~~-------------- 362 (480)
T Consensus 399 ~~~~~~~~~~~d~~~i~pt~~~~~~~~~~~~d~~~iaa~~~~~~~~~~~n~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (649)
T PRK06945 399 SLSLSGTMNAGDSFTVRPTRGAANGFSLATSDGSAIAAASPVRASAAATNTGTGTISQGSVSAGYQLPPGTTTLTYDAAS 478 (649)
T ss_pred EEEECCCCCCCCEEEECCCCCHHCCCEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCC
T ss_conf 88513665567615741530000232144157466430374224556466674036402345554466765430001445
Q ss_pred -------------CCCCCCC-----------CC------------------------------HHHHHHHHHHHCCCCCC
Q ss_conf -------------5666544-----------31------------------------------02456766420111123
Q gi|254780524|r 363 -------------WNVKNLA-----------GY------------------------------PDLINHYCDSFNKNFIF 388 (480)
Q Consensus 363 -------------~~~~~~~-----------~~------------------------------~~~~~~~~~~~~~~~~~ 388 (480)
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~d~~~~~~~~~~~gDn~~a~~l~~l~ 558 (649)
T PRK06945 479 KTLSGFPVGTTVTVAGTPPTSYTITSATTPVPYTPGAGISFNGVSVSLSGTPADGDTFTIGANTGGTNDGRNALALSKLQ 558 (649)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHC
T ss_conf 55556644432113677654322345676544567752000553676326757787055226777878649999999631
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33345677652899998777887664211123223456799999998876628888999999999999999999999999
Q gi|254780524|r 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 (480)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~ 468 (480)
T Consensus 559 ~~~~~~~~~~t~~~~y~~~vs~iG~~a~~a~~~~~~q~~l~~~~~~~r~SvSGVnlDEEl~nLikyQqaY~AaArvItt~ 638 (649)
T PRK06945 559 NAKTLGNGTASLTGAYAQLVNDIGNKASQLKVSSAAQTALLTQITTAQQSVSGVNLDEEAANLLQYQQLYQANAKVIQTA 638 (649)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04213789620999999999999999999999999999999999999974406139999999999999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999874
Q gi|254780524|r 469 DKMLQTLLEG 478 (480)
Q Consensus 469 Demlq~Lin~ 478 (480)
T Consensus 639 deMldtLl~i 648 (649)
T PRK06945 639 STLFDTLLGI 648 (649)
T ss_pred HHHHHHHHHH
T ss_conf 9999999953