HHsearch alignment for GI: 254780524 and conserved domain: PRK07521
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00 E-value=0 Score=471.65 Aligned_cols=477 Identities=33% Similarity=0.525 Sum_probs=398.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 91358899999999999998678744202578998126799986046606998998720688788877544455678878
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLL 80 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (480)
T Consensus 1 Msl~s~lnia~sgL~a~Q~al~vtg~NIANanT~GYsRQ~v~~~~~~~Gv~v~~I~R~~d~fl~~q~r~~~s~~~~~~~~ 80 (482)
T PRK07521 1 MSLSSALNTAQSGLTATSRQTSVVSRNIANALTPGYSRRTASLVSGPYGGQVVGISRAQDEALLAQYLLATSAAAAQDTL 80 (482)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97678999999999999999998856353079988241377877448985787799811489999999998777899999
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78998886512677777640113667776687641386753001122101222222100022456566543200011127
Q gi|254780524|r 81 QSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 (480)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (480)
T Consensus 81 ~~~l~~le~~~~e~~~~~~l~~~l~~F~~a~q~ls~~P~~~~~r~~v~~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V 160 (482)
T PRK07521 81 ASGLERLASAVGDTDYEGSPSARLSDFQAALQTAASSPDNTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIATSV 160 (482)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999983899888757899999999999986198878999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCCCEEEEEEC
Q ss_conf 87887543432101122234566765210012100001010020124787337711478706970610344412576304
Q gi|254780524|r 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 (480)
Q Consensus 161 ~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~~~~~~~~~ 240 (480)
T Consensus 161 ~~iN~l~~~Ia~LN~qI~~~~~~g~~~ndLlDqRD~ll~eLS~lv~i~~~~~~~G~v~v~~~~G~~Lv~g~~~~~~~~~~ 240 (482)
T PRK07521 161 DTLNTLLAQFEDANNAIVSGTATGRDASDLLDQRDALLKQISQEVGVTTVTRDNNDMALYTDGGVTLFETTPREVTFEPT 240 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCEEEECCCCEEEEEECC
T ss_conf 99999999999999999952478999478899999999999853793899637981799937980775377348997216
Q ss_pred CCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 566676643216733655665-6776667653111011102331367787887655431001234557777776543211
Q gi|254780524|r 241 NSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 (480)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (480)
T Consensus 241 ~~~~~~~~~~~~~~dg~~~~~~~~~~~~~gG~l~gll~~rd~~~~~~~~~Ld~lA~~l~~~~n~~~~~~~~~~~--~~ft 318 (482)
T PRK07521 241 ATYTAGTTGNAVYVDGVPLTGGSSVMPLASGSLAGLFQLRDDIAPTYQAQLDEIARGLITRFAESDPSGGAGDP--GLFT 318 (482)
T ss_pred CCCCCCCCCCCEEECCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCC
T ss_conf 77787776751566570113577776767740355677653107999999999999999998551546788887--6313
Q ss_pred CCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 223456666543322222233----3334666210002456666555566654431024567664201111233334567
Q gi|254780524|r 320 ADGIKDLDNKLCQGISETICV----NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 (480)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
T Consensus 319 ~~~~~~~~~~~~~g~a~~i~v~~~~~~~~~~~~~~l~d~~~-~~~~~~~~~g~~g~~~~~~~l~~a~~~~~~~~~~~~~~ 397 (482)
T PRK07521 319 DSGAPADPAGNSAGLAGRISVNAAVDPSQGGDPWLLRDGGI-NGAAYANTTGAAGFSTRLNALVDALSAPRTFDSAAGLS 397 (482)
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 68877676665656433257521125666787323304654-33223678888773789999999850754456656787
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76528999987778876642111232234567999999988766288889999999999999999999999999999999
Q gi|254780524|r 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 (480)
Q Consensus 396 ~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~L 475 (480)
T Consensus 398 ~~~s~~~~~~~~v~~ig~~~~~a~~~~~~~~~~~~~l~~~r~svSGVnlDEE~~nLi~~Q~aY~AsArvitt~demldtL 477 (482)
T PRK07521 398 GSSSLMDLAASSLSWLEQQRSSASSEASYQSALLSRAQEALSNATGVDTDDEMALLLDLEQSYAASAKVISTVDEMLDSL 477 (482)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77469999999999999999999999999999999999999841380599999999999999999999999999999999
Q ss_pred HHHHC
Q ss_conf 87409
Q gi|254780524|r 476 LEGVK 480 (480)
Q Consensus 476 in~~R 480 (480)
T Consensus 478 ln~vR 482 (482)
T PRK07521 478 LRAVR 482 (482)
T ss_pred HHHCC
T ss_conf 98519