HHsearch alignment for GI: 254780524 and conserved domain: PRK07739
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00 E-value=0 Score=436.98 Aligned_cols=458 Identities=18% Similarity=0.241 Sum_probs=355.9
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-----------------CCCEEEEEEEEEHHHH
Q ss_conf 91-35889999999999999867874420257899812679998604-----------------6606998998720688
Q gi|254780524|r 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------------PENVTVVTQRSENKNM 62 (480)
Q Consensus 1 Ms-l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~-----------------~~g~~~~~~~~~~~~~ 62 (480)
T Consensus 1 M~s~f~~Lnia~SGL~a~Q~~l~vt~~NIANanT~GYsRq~v~~~~~~~~~~~g~~~~~~~gq~G~GV~v~~V~R~~d~~ 80 (500)
T PRK07739 1 MPSTFMGLETARRGLFAQQAALYVTGHNIANANTPGYTRQRVNLAATPPYPTVSRNDPKGPGQMGTGVEAGSIERIRDQF 80 (500)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHH
T ss_conf 98405359999999999999999997757327999805205676434675566655666777543676874588830589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHH
Q ss_conf 78887754445567887878998886512677777640113667776687641386753001122101222222100022
Q gi|254780524|r 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142 (480)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (480)
T Consensus 81 l~~q~~~~~s~~~~~~~~~~~l~~~e~~~~~~-~~~gls~~l~~ff~a~~~la~~P~~~~~r~~~~~~a~~l~~~~n~~~ 159 (500)
T PRK07739 81 LDNQYRRENTKLGYWETKADALSQMEDIMNEP-SDTGLNKVLDQFWNSLQELSKNPENLGARSVVRQRAQALADTFNYLY 159 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998888779999999999999983897-75628899999999999987398757789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECC
Q ss_conf 45656654320001112787887543432101122234566765210012100001010020124787337711478706
Q gi|254780524|r 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 (480)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~ 222 (480)
T Consensus 160 ~~l~~~~~~~~~~i~~~V~~iN~ll~qia~LN~qI~~~~~~g~~~ndL~DqRd~ll~~LS~~i~i~v~~~~~G~~~~~~~ 239 (500)
T PRK07739 160 KSLTQIQTDLGNEIDVTVKEINSLASQIADLNKQIAKVEPSGYLPNDLYDQRDLLLDELSKLVNIKVSYNKSGGNALAVA 239 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEECEEEEECCCCCEEEEEC
T ss_conf 99999999999999999999999999999999999974158999751112689999986510261999727897356733
Q ss_pred CCEEEECCC---CCEEEEEEC--------CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCC--------CCC
Q ss_conf 970610344---412576304--------5666766432167336556656776667653111011102--------331
Q gi|254780524|r 223 DGTTLFETV---PRDINFEKM--------NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD--------SVV 283 (480)
Q Consensus 223 ~g~~l~~~~---~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~ 283 (480)
T Consensus 240 ~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~l~g~~~~rd~~~~~~~~~~i 318 (500)
T PRK07739 240 EGTFTIEVLDTNGQSLLVDGTDFSVNELEAGYDN-DTGLVTGISVGTTTTGADINPSKGKLKGLLESYGYMSGGEEKGVY 318 (500)
T ss_pred CCEEEEEECCCCCCEEEECCCCCCEECCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCEEEHHHHHCCCCCCCCCCCCH
T ss_conf 7706888505777257642765420003567788-766312210378665566667885110146521443356544435
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 36778788765543100123455777777654321122345666654332222223333346662100024566665555
Q gi|254780524|r 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 (480)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (480)
T Consensus 319 ~~~~~~Ld~lA~~l~~~~N~~~~~G~~l~g~~g~~~f~~~~~~~~~~----A~~i~v~~~v~~~~~~~~~~~~------- 387 (500)
T PRK07739 319 PEMLANLDELAYTFAKAFNEVHSQGYTLNGSSGGDFFDGEADSAKGA----AGTIKVSDDILASLNNIAAASA------- 387 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC----CCEEEECHHHHCCCHHHHHCCC-------
T ss_conf 99999999999999999987641387878998867777888877765----5137876777358033310168-------
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 66654431024567664201111233334567765289999877788766421112322345679999999887662888
Q gi|254780524|r 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVD 443 (480)
T Consensus 388 --~~~~gd~~~a~~l~------~l~~~~~~~~~~~t~~~~~~~~v~~vg~~~~~a~~~~~~~~~~~~~~~~~~~s~SGVn 459 (500)
T PRK07739 388 --NGEPGDGSNALKLA------NLQDKLNIGLDTTTFQDFYQSLIGKLGVDAQEANRMAENSEVLVDQVDNRRQSVSAVS 459 (500)
T ss_pred --CCCCCCHHHHHHHH------HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf --89999779999999------7333455788987499999999999999999999999999999999999998712966
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999999999999999998740
Q gi|254780524|r 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 444 L~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
T Consensus 460 lDEE~~nLi~~Q~aYqAnAkvItt~demldtLlN~~ 495 (500)
T PRK07739 460 LDEEMTNMIQFQHAYNAAARMITAIDEMLDKIINGM 495 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999999999999846