HHsearch alignment for GI: 254780524 and conserved domain: PRK08147
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00 E-value=0 Score=419.64 Aligned_cols=473 Identities=16% Similarity=0.179 Sum_probs=356.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC----------CCCEEEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 35889999999999999867874420257899812679998604----------66069989987206887888775444
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFDKVLHAHSS 72 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (480)
T Consensus 1 lss~l~ia~sgL~a~Q~al~vt~~NIaNanT~GYsRq~v~~~~~~~~~~~~g~~G~GV~v~~I~R~~D~fl~~~~r~~~s 80 (547)
T PRK08147 1 MSSLINTAMSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQAGSTLTAGGWIGNGVYVSGVQREYDAFITNQLRAAQT 80 (547)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHH
T ss_conf 96189999999999999999997756338999806305775224665567874257879806988152899999999987
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 55678878789988865126777776401136677766876413867530011221012222221000224565665432
Q gi|254780524|r 73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 (480)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T Consensus 81 ~~~~~~~~~~~l~~le~~f~e~--~~gl~~~l~~f~~a~~~ls~~P~~~~~r~~vi~~A~~La~~~n~~~~~L~~~~~~~ 158 (547)
T PRK08147 81 QSSGLTTRYEQMSKIDNLLSDS--TNSLSTTLQDFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKGV 158 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7779999999999999872888--87578999999999999986889889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECC
Q ss_conf 00011127878875434321011222345--6676521001210000101002012478733771147870697061034
Q gi|254780524|r 153 DKEIELEISNLRRFLSELTVVNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 (480)
Q Consensus 153 ~~~~~~~v~~~n~~~~~~~~~n~~~~~~~--~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~ 230 (480)
T Consensus 159 ~~~i~~~V~~iN~ll~~Ia~LN~qI~~~~~~~~g~~~ndL~DqRD~lldeLS~~v~i~v~~~~~G~v~v~~~~G~~Lv~g 238 (547)
T PRK08147 159 NIAIGTSVDQINNYAKQIASLNDQITRLRGVGAGASPNDLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYTLVQG 238 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCEEEEEC
T ss_conf 99999999999999999999999999853667899915789999999999986609389984898089995797267616
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 4412576304566676643216733655665-677666765311101110233136778788765543100123455777
Q gi|254780524|r 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 (480)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (480)
T Consensus 239 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~G~l~gll~~rd~~l~~~~~~Ld~la~~l~~~~n~~~~~G~ 317 (547)
T PRK08147 239 STAYQLAAVPSSADP-TRTTVAYVDGTAGNIEIPEKLLTTGSLGGLLTFRSQDLDQTRNQLGQLALAFADAFNAQHKAGF 317 (547)
T ss_pred CCCEEEEEECCCCCC-CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 851156762267888-6048987248775101576664764044589877603899999999999999999988875066
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCCC-------------------------------CCCCCCCCCCCCCCCCCCC
Q ss_conf 7776543211223456666543---32222-------------------------------2233333466621000245
Q gi|254780524|r 310 NSENVPGLFIADGIKDLDNKLC---QGISE-------------------------------TICVNPQYRSNPSFLRDGG 355 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 355 (480)
T Consensus 318 d~~g~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 397 (547)
T PRK08147 318 DANGDKGEDFFSIGKPAVLSNSKNTGDASITAEYTDASAVKATDYKIEFDGTNWQVTRLSDNTTFTVTPDANGDTLEFDG 397 (547)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEECC
T ss_conf 88888665441357754345666777640367742454445566146424776236652677533445678876044036
Q ss_pred CC---------CCCCC--------C-------CCCCCCCCH---HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66---------66555--------5-------666544310---245676642011112333345677652899998777
Q gi|254780524|r 356 SV---------SKKFL--------W-------NVKNLAGYP---DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 (480)
Q Consensus 356 ~~---------~~~~~--------~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (480)
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ia~~~~~~~~~~d~~~a~~l~~l~~-~~~~~~~~t~~~~~~~~v 476 (547)
T PRK08147 398 LKLTITGTPAANDSFTLKPVSDAIVNMDVLITDESKIAMASEADGGDSDNRNGQALLDLQN-KKLVGGNKSFNDAYASLV 476 (547)
T ss_pred CEECCCCCCCCCCEEEECCCCCHHHCCCEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHH
T ss_conf 3101356666786044034420121132002585653014787778776389999997443-115688746999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88766421112322345679999999887662888899999999999999999999999999999998740
Q gi|254780524|r 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 409 ~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
T Consensus 477 s~ig~~~~~a~~~~~~~~~~~~~l~~~r~svSGVnlDEE~~nLi~~Q~aY~AsArvist~demldtLlni~ 547 (547)
T PRK08147 477 SDVGNQTATLKTSSTTQANVVTQLTTQQQSVSGVNLDEEYGNLQRFQQYYLANAQVLQTASTLFDALLNIR 547 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999998431766999999999999999999999999999999987759