HHsearch alignment for GI: 254780524 and conserved domain: PRK08147

>PRK08147 flgK flagellar hook-associated protein FlgK; Validated.
Probab=100.00  E-value=0  Score=419.64  Aligned_cols=473  Identities=16%  Similarity=0.179  Sum_probs=356.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC----------CCCEEEEEEEEEHHHHHHHHHHHHHH
Q ss_conf             35889999999999999867874420257899812679998604----------66069989987206887888775444
Q gi|254780524|r    3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFDKVLHAHSS   72 (480)
Q Consensus         3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~   72 (480)
T Consensus         1 lss~l~ia~sgL~a~Q~al~vt~~NIaNanT~GYsRq~v~~~~~~~~~~~~g~~G~GV~v~~I~R~~D~fl~~~~r~~~s   80 (547)
T PRK08147          1 MSSLINTAMSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQAGSTLTAGGWIGNGVYVSGVQREYDAFITNQLRAAQT   80 (547)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHH
T ss_conf             96189999999999999999997756338999806305775224665567874257879806988152899999999987


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             55678878789988865126777776401136677766876413867530011221012222221000224565665432
Q gi|254780524|r   73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA  152 (480)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (480)
T Consensus        81 ~~~~~~~~~~~l~~le~~f~e~--~~gl~~~l~~f~~a~~~ls~~P~~~~~r~~vi~~A~~La~~~n~~~~~L~~~~~~~  158 (547)
T PRK08147         81 QSSGLTTRYEQMSKIDNLLSDS--TNSLSTTLQDFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKGV  158 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7779999999999999872888--87578999999999999986889889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECC
Q ss_conf             00011127878875434321011222345--6676521001210000101002012478733771147870697061034
Q gi|254780524|r  153 DKEIELEISNLRRFLSELTVVNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET  230 (480)
Q Consensus       153 ~~~~~~~v~~~n~~~~~~~~~n~~~~~~~--~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~  230 (480)
T Consensus       159 ~~~i~~~V~~iN~ll~~Ia~LN~qI~~~~~~~~g~~~ndL~DqRD~lldeLS~~v~i~v~~~~~G~v~v~~~~G~~Lv~g  238 (547)
T PRK08147        159 NIAIGTSVDQINNYAKQIASLNDQITRLRGVGAGASPNDLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYTLVQG  238 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCEEEEEC
T ss_conf             99999999999999999999999999853667899915789999999999986609389984898089995797267616


Q ss_pred             CCCEEEEEECCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             4412576304566676643216733655665-677666765311101110233136778788765543100123455777
Q gi|254780524|r  231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG  309 (480)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (480)
T Consensus       239 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~G~l~gll~~rd~~l~~~~~~Ld~la~~l~~~~n~~~~~G~  317 (547)
T PRK08147        239 STAYQLAAVPSSADP-TRTTVAYVDGTAGNIEIPEKLLTTGSLGGLLTFRSQDLDQTRNQLGQLALAFADAFNAQHKAGF  317 (547)
T ss_pred             CCCEEEEEECCCCCC-CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             851156762267888-6048987248775101576664764044589877603899999999999999999988875066


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC---CCCCC-------------------------------CCCCCCCCCCCCCCCCCCC
Q ss_conf             7776543211223456666543---32222-------------------------------2233333466621000245
Q gi|254780524|r  310 NSENVPGLFIADGIKDLDNKLC---QGISE-------------------------------TICVNPQYRSNPSFLRDGG  355 (480)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~  355 (480)
T Consensus       318 d~~g~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  397 (547)
T PRK08147        318 DANGDKGEDFFSIGKPAVLSNSKNTGDASITAEYTDASAVKATDYKIEFDGTNWQVTRLSDNTTFTVTPDANGDTLEFDG  397 (547)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEECC
T ss_conf             88888665441357754345666777640367742454445566146424776236652677533445678876044036


Q ss_pred             CC---------CCCCC--------C-------CCCCCCCCH---HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             66---------66555--------5-------666544310---245676642011112333345677652899998777
Q gi|254780524|r  356 SV---------SKKFL--------W-------NVKNLAGYP---DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI  408 (480)
Q Consensus       356 ~~---------~~~~~--------~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  408 (480)
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ia~~~~~~~~~~d~~~a~~l~~l~~-~~~~~~~~t~~~~~~~~v  476 (547)
T PRK08147        398 LKLTITGTPAANDSFTLKPVSDAIVNMDVLITDESKIAMASEADGGDSDNRNGQALLDLQN-KKLVGGNKSFNDAYASLV  476 (547)
T ss_pred             CEECCCCCCCCCCEEEECCCCCHHHCCCEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHH
T ss_conf             3101356666786044034420121132002585653014787778776389999997443-115688746999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88766421112322345679999999887662888899999999999999999999999999999998740
Q gi|254780524|r  409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV  479 (480)
Q Consensus       409 ~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~  479 (480)
T Consensus       477 s~ig~~~~~a~~~~~~~~~~~~~l~~~r~svSGVnlDEE~~nLi~~Q~aY~AsArvist~demldtLlni~  547 (547)
T PRK08147        477 SDVGNQTATLKTSSTTQANVVTQLTTQQQSVSGVNLDEEYGNLQRFQQYYLANAQVLQTASTLFDALLNIR  547 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999999999999999998431766999999999999999999999999999999987759