HHsearch alignment for GI: 254780524 and conserved domain: PRK12629
>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=98.83 E-value=5.1e-09 Score=72.50 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CEEEEEEEEEC
Q ss_conf 91358899999999999998678744202578998------12679998604
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~G------yk~~~~~f~~~ 46 (480)
T Consensus 1 Ms~~~~~~Is~Sgl~Aqr~Rm~~ia~NiANa~t~~~~~~~~yr~~~~vf~~~ 52 (135)
T PRK12629 1 MSNLPIFDVAGSALHAQSVRLSTIASNLANADSVAGSAEATYKPIEPIFQAQ 52 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 9636577699998999999999999987746888989998776401125644