HHsearch alignment for GI: 254780524 and conserved domain: PRK12637

>PRK12637 flgE flagellar hook protein FlgE; Provisional.
Probab=100.00  E-value=0  Score=367.87  Aligned_cols=437  Identities=15%  Similarity=0.078  Sum_probs=216.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC------CCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999867874420257899812679998604------660699899872068878887754445567887
Q gi|254780524|r    6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRL   79 (480)
Q Consensus         6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (480)
T Consensus         2 ~~~~GvsGl~a~~~~l~vi~nNiAN~~T~gfK~~~~~F~~~~~~~~~g~g~~~~~~~---~~~~~G~~~~t~~~~d~ai~   78 (473)
T PRK12637          2 GFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAIN---QRFTVGNISTTGGEYDMAID   78 (473)
T ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEE---EEECCCCEEECCCCCEEEEE
T ss_conf             377899999998855325514767377600085667166754558766734764789---88256780667983438894


Q ss_pred             -HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             -8789988865126777776401136677766876413867530011221012222221000224565665432000111
Q gi|254780524|r   80 -LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL  158 (480)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (480)
T Consensus        79 ~g~GfF~v~~~------~~~~~yTR~G~F~~d~~g~lv~~~G~~lqG~~~~~~g~~~~~i----------~l~~~~-~~p  141 (473)
T PRK12637         79 GGKGFFRLTDQ------SGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGVGAQPVDL----------QLPQGN-IAP  141 (473)
T ss_pred             CCCEEEEEECC------CCCEEEECCCCEEECCCCEEECCCCCEEECCCCCCCCCCEEEE----------ECCCCC-CCC
T ss_conf             69707999738------9966774364266879970985899887764467788740113----------546777-587


Q ss_pred             HH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---CEEEEEEEECCC-----CEEEEECCCCEEEEC
Q ss_conf             27-878875434321011222345667652100121000010100---201247873377-----114787069706103
Q gi|254780524|r  159 EI-SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS---EIIGISTIVRNN-----NDMVVYTSDGTTLFE  229 (480)
Q Consensus       159 ~v-~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s---~~~~~~~~~~~~-----~~~~v~~~~g~~l~~  229 (480)
T Consensus       142 ~aTt~~----~~~~NL~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~d  215 (473)
T PRK12637        142 QATSTA----GLQTNLNANAKVIDPNDTPAVDGTVELDGTTYRFTNAGGTFAWVAPAPLDGTYNGGDIVI--AGGAVTGD  215 (473)
T ss_pred             CCCEEE----EEEEECCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCEEE--CCCCCCCC
T ss_conf             432058----788840677644477666454650101451257623676022201233356434552022--05520133


Q ss_pred             CC--C---------CEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCC---C-CCC--CCCCHHHCCCCCHHHHHHHHH
Q ss_conf             44--4---------12576304566676643216733655665677666---7-653--111011102331367787887
Q gi|254780524|r  230 TV--P---------RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV---P-KGK--IKALLQIRDSVVPIFQNQLDE  292 (480)
Q Consensus       230 ~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~g~--~~~~~~~~~~~~~~~~~~~~~  292 (480)
T Consensus       216 ~~~~~~~~~~~~~~~~~~~d~t~~~~~~~~~~~~v~ds~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~-------~  288 (473)
T PRK12637        216 LASQPGYQPYKPLVAGIPFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQPM-------Q  288 (473)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCC-------C
T ss_conf             235666544332123565687777531344306988268982578999861467787743689995378731-------2


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65543100123455777777654-3211-223456666543322222233333466621000245666655556665443
Q gi|254780524|r  293 MARVLIGSFSEKDPIAGNSENVP-GLFI-ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG  370 (480)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (480)
T Consensus       289 ~~~~-~~~tl~fd~~g~l~~~~~~~~~t~~~~~~~~~~~~~~~it~~~~g~Tq~~s~~~-~~~~qdG~~~G~L~~~~Id~  366 (473)
T PRK12637        289 VNGG-ASQTLNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQYGSDFA-PKVVQNGYSSGEFMGLSVGK  366 (473)
T ss_pred             CCCC-CCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCC-CEECCCCCCCCEEEEEEECC
T ss_conf             3577-630588658885147887421576257877676776048872665167546665-12302784454156889899


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             10245676642011112333345677652899998777887664211123223456799999998876628888999999
Q gi|254780524|r  371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF  450 (480)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tn  450 (480)
T Consensus       367 dG~I~g~ySNG~t~~l~qIaLA~F~Np~GL~~~G~n~--y~~T~~SG~~~~g~ag~gg~G~I~~gaLE~SNVDLa~Eft~  444 (473)
T PRK12637        367 DGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVGNNA--WVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVN  444 (473)
T ss_pred             CCEEEEEECCCCEEEEEEEEEEEECCHHHCEECCCCE--EECCCCCCCCEECCCCCCCCCEEEECCEEHHHHHHHHHHHH
T ss_conf             9489999879959898899999616958660137963--87201378855757998886217217540244079999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999998740
Q gi|254780524|r  451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV  479 (480)
Q Consensus       451 LI~~QraYqANakvItT~Demlq~Lin~~  479 (480)
T Consensus       445 mIvtQR~yQANSKvItTsDemLqelinLK  473 (473)
T PRK12637        445 MIVAQRTYQANAQTIKTQDEVMQVLMNMR  473 (473)
T ss_pred             HHHHHHHHHHHCEEEEEHHHHHHHHHHCC
T ss_conf             99987650143258875899999997059