HHsearch alignment for GI: 254780524 and conserved domain: PRK12694
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=99.98 E-value=1.4e-34 Score=230.24 Aligned_cols=68 Identities=25% Similarity=0.367 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76642111232234567999999988766288889999999999999999999999999999999874
Q gi|254780524|r 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 (480)
Q Consensus 411 ~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~ 478 (480)
T Consensus 193 ~~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNVd~~~Emv~mI~~qRaye~~~k~i~t~De~l~~~~ql 260 (260)
T PRK12694 193 AETTSSGAPNVSQPGLNGAGTLKQGYVEASNVNVVEELVNMIQTQRAYEINSKAVTTSDQMLQRLTQM 260 (260)
T ss_pred ECCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 20367788754667878731684486752146399999999999999999988999999999998668