HHsearch alignment for GI: 254780524 and conserved domain: PRK12714

>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional.
Probab=100.00  E-value=0  Score=405.58  Aligned_cols=470  Identities=16%  Similarity=0.181  Sum_probs=349.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE----------CCCCEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf             88999999999999986787442025789981267999860----------46606998998720688788877544455
Q gi|254780524|r    5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHAHSSAI   74 (480)
Q Consensus         5 ~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   74 (480)
T Consensus         2 sll~ig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~~~~~~~~~~~~~~~G~Gv~v~~i~R~~D~fl~~~~~~~~s~~   81 (624)
T PRK12714          2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITDVGRVADQLAISRLLDSGGEL   81 (624)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf             71789999999999999988475651689980312778751367556786410578973799826189999999987788


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             67887878998886512677777640113667776687641386753001122101222222100022456566543200
Q gi|254780524|r   75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK  154 (480)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (480)
T Consensus        82 ~~~~~~~~~~~~~e~~~~~~--~~~l~~~l~~ff~a~~~ls~~P~~~~~R~~vl~~a~~L~~~~~~~~~~l~~~~~~~~~  159 (624)
T PRK12714         82 SRLQQLSSLSNRVDALYSNT--ATNVAGLWSNFFDSTSALSSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNS  159 (624)
T ss_pred             HHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999862888--7647899999999999998688887999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCCCE
Q ss_conf             01112787887543432101122234566765210012100001010020124787337711478706970610344412
Q gi|254780524|r  155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD  234 (480)
Q Consensus       155 ~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~~~  234 (480)
T Consensus       160 ~i~~~v~~iN~l~~qIa~LN~~I~~~--~~~~~~dL~DqRD~ll~eLS~~v~i~~~~~~~g~v~v~~~~G~~Lv~g~~~~  237 (624)
T PRK12714        160 GLTSSVDEVNRLTQQIAKINGTIGSS--IQNAAPDLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAS  237 (624)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEECCCCEEEECCCEE
T ss_conf             99999999999999999999999753--4899467788999999999766082799858982899944981788447436


Q ss_pred             EEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             57630456667664321673365566567766676531110111023313677878876554310012345577777765
Q gi|254780524|r  235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV  314 (480)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (480)
T Consensus       238 ~l~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~gG~l~gl~~~rd~~l~~~~~~l~~la~~l~~~~N~~h~~G~dl~g~  315 (624)
T PRK12714        238 KLTTVADPYQPT--KLQVAMQTQGQNVSLSPSSLGGQIGGLLEFRSSVLEPTQAELGRLAVGMASSFNAGHSQGMDLYGA  315 (624)
T ss_pred             EEEEECCCCCCC--CEEEEEECCCCEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             899832788875--058999528842533666677412367760003326678888889998999877887617776686


Q ss_pred             CCCCCCCCCCCCCCCCC---C---------------CCCCCCC------------CCC----------------------
Q ss_conf             43211223456666543---3---------------2222223------------333----------------------
Q gi|254780524|r  315 PGLFIADGIKDLDNKLC---Q---------------GISETIC------------VNP----------------------  342 (480)
Q Consensus       315 ~~~~~~~~~~~~~~~~~---~---------------~~~~~~~------------~~~----------------------  342 (480)
T Consensus       316 ~g~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  395 (624)
T PRK12714        316 LGGNFFNIGSPTTAANPSNTGTASLSASFSNLGAVDGQNVTLSFDGTNWKATRADTGSAVPLTGTGTAADPLVLNGVSMV  395 (624)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCEEECCCCCCCCCCEEECCEEEE
T ss_conf             67652024775411476766642688885355654565069998256228985378852104666677775011463566


Q ss_pred             ----CCCCCCCCCCCCCCCCCCC---------------------CCCCCC------------C-----------------
Q ss_conf             ----3466621000245666655---------------------556665------------4-----------------
Q gi|254780524|r  343 ----QYRSNPSFLRDGGSVSKKF---------------------LWNVKN------------L-----------------  368 (480)
Q Consensus       343 ----~~~~~~~~~~~~~~~~~~~---------------------~~~~~~------------~-----------------  368 (480)
T Consensus       396 ~~~~~~~~d~~~~~~~~~~a~~~~~~~~d~~~ia~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  475 (624)
T PRK12714        396 VGGTPASGDKFLLQPTAGLAGSLSVAITDPSRIAAATPVKATATTANLGTGKISDVKVTNAQNPALLTPSSVEFIDANQY  475 (624)
T ss_pred             ECCCCCCCCEEEECCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCE
T ss_conf             44766678757842342345552488517555320264211212244566402113521567644468642022046512


Q ss_pred             CCCH-------------------------------------HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             4310-------------------------------------245676642011112333345677652899998777887
Q gi|254780524|r  369 AGYP-------------------------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL  411 (480)
Q Consensus       369 ~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  411 (480)
T Consensus       476 ~~~~~~~~~~~~g~~~~~~g~~~~l~~~~~~~d~~~~~~~~~g~~Dn~na~~la~l~~~~~~~~~t~Tl~~~y~~lvs~v  555 (624)
T PRK12714        476 TIDGAGPFAYTPGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLAKVEDAKALNGGTVTLNGALSGLTTSV  555 (624)
T ss_pred             EECCCCCCCCCCCCEEECCCCEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHH
T ss_conf             42267754446775121166025403675556510014677777875889999840434102688477999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r  412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK  480 (480)
Q Consensus       412 ~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R  480 (480)
T Consensus       556 G~~a~~a~~~~~~~~~l~~~~~~~r~SvSGVnlDEE~anLikfQqaY~AaArvIttadem~dtLL~~vR  624 (624)
T PRK12714        556 GSAARAANYSADAQKVINDQAQASRDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTMFQAILGAVR  624 (624)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999999999999999870306168999999999999999999999999999999998519