HHsearch alignment for GI: 254780524 and conserved domain: PRK12714
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional.
Probab=100.00 E-value=0 Score=405.58 Aligned_cols=470 Identities=16% Similarity=0.181 Sum_probs=349.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE----------CCCCEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 88999999999999986787442025789981267999860----------46606998998720688788877544455
Q gi|254780524|r 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHAHSSAI 74 (480)
Q Consensus 5 ~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (480)
T Consensus 2 sll~ig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~~~~~~~~~~~~~~~G~Gv~v~~i~R~~D~fl~~~~~~~~s~~ 81 (624)
T PRK12714 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITDVGRVADQLAISRLLDSGGEL 81 (624)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 71789999999999999988475651689980312778751367556786410578973799826189999999987788
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67887878998886512677777640113667776687641386753001122101222222100022456566543200
Q gi|254780524|r 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 (480)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (480)
T Consensus 82 ~~~~~~~~~~~~~e~~~~~~--~~~l~~~l~~ff~a~~~ls~~P~~~~~R~~vl~~a~~L~~~~~~~~~~l~~~~~~~~~ 159 (624)
T PRK12714 82 SRLQQLSSLSNRVDALYSNT--ATNVAGLWSNFFDSTSALSSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNS 159 (624)
T ss_pred HHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999862888--7647899999999999998688887999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCCCE
Q ss_conf 01112787887543432101122234566765210012100001010020124787337711478706970610344412
Q gi|254780524|r 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 (480)
Q Consensus 155 ~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~~~ 234 (480)
T Consensus 160 ~i~~~v~~iN~l~~qIa~LN~~I~~~--~~~~~~dL~DqRD~ll~eLS~~v~i~~~~~~~g~v~v~~~~G~~Lv~g~~~~ 237 (624)
T PRK12714 160 GLTSSVDEVNRLTQQIAKINGTIGSS--IQNAAPDLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAS 237 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEECCCCEEEECCCEE
T ss_conf 99999999999999999999999753--4899467788999999999766082799858982899944981788447436
Q ss_pred EEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 57630456667664321673365566567766676531110111023313677878876554310012345577777765
Q gi|254780524|r 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 (480)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (480)
T Consensus 238 ~l~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~gG~l~gl~~~rd~~l~~~~~~l~~la~~l~~~~N~~h~~G~dl~g~ 315 (624)
T PRK12714 238 KLTTVADPYQPT--KLQVAMQTQGQNVSLSPSSLGGQIGGLLEFRSSVLEPTQAELGRLAVGMASSFNAGHSQGMDLYGA 315 (624)
T ss_pred EEEEECCCCCCC--CEEEEEECCCCEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 899832788875--058999528842533666677412367760003326678888889998999877887617776686
Q ss_pred CCCCCCCCCCCCCCCCC---C---------------CCCCCCC------------CCC----------------------
Q ss_conf 43211223456666543---3---------------2222223------------333----------------------
Q gi|254780524|r 315 PGLFIADGIKDLDNKLC---Q---------------GISETIC------------VNP---------------------- 342 (480)
Q Consensus 315 ~~~~~~~~~~~~~~~~~---~---------------~~~~~~~------------~~~---------------------- 342 (480)
T Consensus 316 ~g~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 395 (624)
T PRK12714 316 LGGNFFNIGSPTTAANPSNTGTASLSASFSNLGAVDGQNVTLSFDGTNWKATRADTGSAVPLTGTGTAADPLVLNGVSMV 395 (624)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCEEECCCCCCCCCCEEECCEEEE
T ss_conf 67652024775411476766642688885355654565069998256228985378852104666677775011463566
Q ss_pred ----CCCCCCCCCCCCCCCCCCC---------------------CCCCCC------------C-----------------
Q ss_conf ----3466621000245666655---------------------556665------------4-----------------
Q gi|254780524|r 343 ----QYRSNPSFLRDGGSVSKKF---------------------LWNVKN------------L----------------- 368 (480)
Q Consensus 343 ----~~~~~~~~~~~~~~~~~~~---------------------~~~~~~------------~----------------- 368 (480)
T Consensus 396 ~~~~~~~~d~~~~~~~~~~a~~~~~~~~d~~~ia~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 475 (624)
T PRK12714 396 VGGTPASGDKFLLQPTAGLAGSLSVAITDPSRIAAATPVKATATTANLGTGKISDVKVTNAQNPALLTPSSVEFIDANQY 475 (624)
T ss_pred ECCCCCCCCEEEECCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCE
T ss_conf 44766678757842342345552488517555320264211212244566402113521567644468642022046512
Q ss_pred CCCH-------------------------------------HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4310-------------------------------------245676642011112333345677652899998777887
Q gi|254780524|r 369 AGYP-------------------------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 (480)
Q Consensus 369 ~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (480)
T Consensus 476 ~~~~~~~~~~~~g~~~~~~g~~~~l~~~~~~~d~~~~~~~~~g~~Dn~na~~la~l~~~~~~~~~t~Tl~~~y~~lvs~v 555 (624)
T PRK12714 476 TIDGAGPFAYTPGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLAKVEDAKALNGGTVTLNGALSGLTTSV 555 (624)
T ss_pred EECCCCCCCCCCCCEEECCCCEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHH
T ss_conf 42267754446775121166025403675556510014677777875889999840434102688477999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 412 ~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
T Consensus 556 G~~a~~a~~~~~~~~~l~~~~~~~r~SvSGVnlDEE~anLikfQqaY~AaArvIttadem~dtLL~~vR 624 (624)
T PRK12714 556 GSAARAANYSADAQKVINDQAQASRDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTMFQAILGAVR 624 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999999999870306168999999999999999999999999999999998519