Query gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 480
No_of_seqs 130 out of 1801
Neff 10.7
Searched_HMMs 39220
Date Sun May 29 23:04:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780524.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07521 flgK flagellar hook-a 100.0 0 0 471.6 39.7 477 1-480 1-482 (482)
2 PRK07739 flgK flagellar hook-a 100.0 0 0 437.0 35.6 458 1-479 1-495 (500)
3 PRK08147 flgK flagellar hook-a 100.0 0 0 419.6 35.0 473 3-479 1-547 (547)
4 PRK07191 flgK flagellar hook-a 100.0 0 0 418.3 35.2 445 1-479 1-456 (456)
5 PRK06665 flgK flagellar hook-a 100.0 0 0 419.0 33.8 471 1-479 1-626 (628)
6 COG1256 FlgK Flagellar hook-as 100.0 0 0 419.6 32.9 477 1-480 1-552 (552)
7 PRK08471 flgK flagellar hook-a 100.0 0 0 408.3 37.1 475 1-480 1-612 (612)
8 TIGR02492 flgK_ends flagellar 100.0 0 0 409.8 31.1 452 5-478 1-495 (495)
9 PRK12714 flgK flagellar hook-a 100.0 0 0 405.6 34.5 470 5-480 2-624 (624)
10 PRK12715 flgK flagellar hook-a 100.0 0 0 398.2 35.9 469 5-480 2-649 (649)
11 PRK06945 flgK flagellar hook-a 100.0 0 0 395.0 34.9 472 4-478 2-648 (649)
12 PRK08871 flgK flagellar hook-a 100.0 0 0 394.1 34.5 471 1-479 1-626 (626)
13 PRK05683 flgK flagellar hook-a 100.0 0 0 388.6 35.6 469 5-479 2-676 (676)
14 PRK06799 flgK flagellar hook-a 100.0 0 0 376.6 32.4 417 3-479 2-431 (431)
15 PRK08425 flgE flagellar hook p 100.0 0 0 393.4 -4.7 119 360-480 598-716 (716)
16 PRK05841 flgE flagellar hook p 100.0 0 0 391.5 -6.2 122 357-480 473-605 (605)
17 PRK06803 flgE flagellar hook p 100.0 0 0 371.7 -6.2 392 6-479 2-398 (398)
18 COG1749 FlgE Flagellar hook pr 100.0 0 0 365.4 -4.8 405 3-480 1-423 (423)
19 PRK12637 flgE flagellar hook p 100.0 0 0 367.9 -10.0 437 6-479 2-473 (473)
20 PRK05682 flgE flagellar hook p 100.0 0 0 348.1 1.4 397 6-479 2-414 (414)
21 TIGR02488 flgG_G_neg flagellar 100.0 0 0 303.9 -1.5 234 6-479 1-263 (263)
22 TIGR02489 flgE_epsilon flagell 100.0 7.8E-44 0 287.3 -6.1 110 369-480 768-877 (877)
23 PRK12636 flgG flagellar basal 100.0 1.6E-36 4E-41 242.3 -3.0 69 412-480 195-263 (263)
24 COG4786 FlgG Flagellar basal b 100.0 4.8E-35 1.2E-39 233.1 3.5 70 410-480 196-265 (265)
25 PRK12691 flgG flagellar basal 100.0 7E-36 1.8E-40 238.3 -3.4 69 412-480 194-262 (262)
26 PRK12693 flgG flagellar basal 100.0 1.4E-35 3.7E-40 236.3 -3.6 70 410-479 192-261 (261)
27 PRK12816 flgG flagellar basal 100.0 8.1E-35 2.1E-39 231.7 -0.7 69 412-480 196-264 (264)
28 PRK12694 flgG flagellar basal 100.0 1.4E-34 3.5E-39 230.2 -1.0 68 411-478 193-260 (260)
29 PRK12692 flgG flagellar basal 100.0 1.5E-34 3.9E-39 230.0 -2.4 69 412-480 194-262 (262)
30 PRK12817 flgG flagellar basal 100.0 2.4E-32 6.2E-37 216.4 -2.8 50 431-480 212-261 (261)
31 PRK12640 flgF flagellar basal 100.0 8.1E-31 2.1E-35 207.0 3.1 50 431-480 195-244 (246)
32 PRK12689 flgF flagellar basal 100.0 9.8E-30 2.5E-34 200.3 3.7 49 431-479 200-248 (253)
33 PRK12818 flgG flagellar basal 99.9 1.8E-29 4.6E-34 198.7 0.1 114 3-123 1-135 (255)
34 PRK12642 flgF flagellar basal 99.9 1.8E-28 4.5E-33 192.6 5.1 48 432-479 190-237 (241)
35 PRK12641 flgF flagellar basal 99.9 9.5E-29 2.4E-33 194.3 2.1 50 431-480 200-249 (252)
36 PRK12819 flgG flagellar basal 99.9 2.4E-28 6.1E-33 191.8 3.4 50 430-479 206-255 (257)
37 PRK12690 flgF flagellar basal 99.9 1.2E-27 2.9E-32 187.5 3.3 49 431-479 187-235 (237)
38 TIGR03506 FlgEFG_subfam fagell 99.9 3.6E-29 9.2E-34 196.8 -9.8 113 5-126 1-124 (231)
39 TIGR02490 flgF flagellar basal 99.6 4.9E-16 1.3E-20 115.8 1.7 50 431-480 204-253 (254)
40 PRK12643 flgF flagellar basal 99.4 4.6E-15 1.2E-19 109.8 -4.1 107 3-115 1-113 (209)
41 PRK05681 flgC flagellar basal 99.2 2.6E-11 6.5E-16 86.7 6.7 46 435-480 93-138 (139)
42 pfam06429 DUF1078 Domain of un 99.2 2.6E-11 6.7E-16 86.6 5.5 39 440-478 1-39 (39)
43 PRK05681 flgC flagellar basal 99.2 3.5E-11 9E-16 85.9 5.3 58 1-58 1-74 (139)
44 PRK12632 flgC flagellar basal 99.1 1.3E-10 3.3E-15 82.4 5.2 45 436-480 85-129 (130)
45 PRK12632 flgC flagellar basal 99.0 4.4E-10 1.1E-14 79.1 5.4 46 1-46 2-47 (130)
46 TIGR01395 FlgC flagellar basal 99.0 2.4E-10 6.2E-15 80.7 3.6 46 435-480 102-147 (147)
47 PRK12782 flgC flagellar basal 99.0 5.8E-10 1.5E-14 78.4 5.1 46 435-480 92-137 (138)
48 PRK12631 flgC flagellar basal 99.0 1.1E-09 2.8E-14 76.6 5.7 45 436-480 94-138 (138)
49 PRK12628 flgC flagellar basal 98.9 1.1E-09 2.8E-14 76.6 5.2 43 436-478 96-138 (140)
50 COG1558 FlgC Flagellar basal b 98.9 2.5E-09 6.5E-14 74.4 6.4 46 435-480 92-137 (137)
51 PRK12630 flgC flagellar basal 98.9 1.3E-09 3.2E-14 76.2 4.8 45 436-480 99-143 (143)
52 PRK12631 flgC flagellar basal 98.9 2.4E-09 6E-14 74.6 5.1 45 1-45 1-51 (138)
53 PRK12629 flgC flagellar basal 98.9 1.8E-09 4.7E-14 75.3 4.5 46 435-480 90-135 (135)
54 PRK06802 flgC flagellar basal 98.9 1.3E-09 3.2E-14 76.3 3.4 45 436-480 96-140 (141)
55 PRK06802 flgC flagellar basal 98.8 4.1E-09 1E-13 73.1 5.1 46 1-46 1-52 (141)
56 PRK12782 flgC flagellar basal 98.8 5.2E-09 1.3E-13 72.4 5.5 46 1-46 3-55 (138)
57 PRK12629 flgC flagellar basal 98.8 5.1E-09 1.3E-13 72.5 5.1 46 1-46 1-52 (135)
58 PRK12630 flgC flagellar basal 98.8 7.5E-09 1.9E-13 71.5 5.1 45 1-45 1-51 (143)
59 PRK12628 flgC flagellar basal 98.8 1.2E-08 3.1E-13 70.2 5.0 45 1-45 1-51 (140)
60 pfam00460 Flg_bb_rod Flagella 98.7 6.4E-09 1.6E-13 71.9 2.5 31 7-37 1-31 (31)
61 COG1558 FlgC Flagellar basal b 98.7 2.5E-08 6.4E-13 68.3 5.2 59 1-59 1-74 (137)
62 PRK12622 flgB flagellar basal 98.6 5.1E-08 1.3E-12 66.3 3.5 45 1-45 1-46 (135)
63 PRK12621 flgB flagellar basal 98.5 1E-07 2.6E-12 64.5 3.4 44 2-45 3-47 (136)
64 PRK12619 flgB flagellar basal 98.5 1.1E-07 2.9E-12 64.2 3.1 43 3-45 5-47 (130)
65 TIGR01395 FlgC flagellar basal 98.4 1.2E-07 3.1E-12 64.0 2.9 42 4-45 1-50 (147)
66 PRK12625 flgB flagellar basal 98.4 1.8E-07 4.7E-12 62.9 3.0 43 3-45 5-47 (132)
67 PRK12624 flgB flagellar basal 98.4 2.3E-07 5.9E-12 62.3 3.4 40 6-45 10-49 (143)
68 PRK05680 flgB flagellar basal 98.4 2.9E-07 7.3E-12 61.7 3.1 43 3-45 5-47 (137)
69 PRK12623 flgB flagellar basal 98.3 2.6E-07 6.5E-12 62.0 2.8 40 6-45 12-51 (131)
70 COG1815 FlgB Flagellar basal b 98.3 3.1E-07 7.8E-12 61.5 2.8 46 1-46 2-47 (133)
71 PRK12620 flgB flagellar basal 98.3 3.6E-07 9.2E-12 61.1 3.1 43 3-45 5-47 (132)
72 PRK12685 flgB flagellar basal 98.2 7.4E-07 1.9E-11 59.2 2.8 43 3-45 5-47 (116)
73 PRK12626 flgB flagellar basal 98.2 8.7E-07 2.2E-11 58.7 2.1 43 3-45 5-47 (162)
74 PRK06003 flgB flagellar basal 98.1 1.4E-06 3.6E-11 57.5 2.7 46 1-46 1-47 (126)
75 PRK06797 flgB flagellar basal 98.0 1.9E-06 4.9E-11 56.6 1.6 32 14-45 12-43 (135)
76 PRK07182 flgB flagellar basal 98.0 3E-06 7.6E-11 55.5 2.4 43 3-45 5-47 (148)
77 COG4787 FlgF Flagellar basal b 98.0 5.9E-06 1.5E-10 53.6 3.6 50 431-480 200-249 (251)
78 PRK06004 flgB flagellar basal 97.9 3.3E-06 8.3E-11 55.2 1.7 32 12-43 4-35 (126)
79 PRK12627 flgB flagellar basal 97.7 3.5E-05 8.8E-10 48.9 3.4 39 6-44 7-46 (128)
80 COG4787 FlgF Flagellar basal b 97.6 2.6E-06 6.7E-11 55.8 -3.7 104 3-113 1-111 (251)
81 COG1344 FlgL Flagellin and rel 96.4 0.056 1.4E-06 29.1 10.2 71 410-480 290-360 (360)
82 PRK12627 flgB flagellar basal 96.1 0.015 3.8E-07 32.6 5.7 39 438-476 87-125 (128)
83 PRK12804 flagellin; Provisiona 96.1 0.075 1.9E-06 28.3 10.0 58 423-480 250-307 (307)
84 PRK06003 flgB flagellar basal 95.9 0.021 5.4E-07 31.7 5.7 38 440-477 88-125 (126)
85 PRK06004 flgB flagellar basal 95.6 0.034 8.6E-07 30.4 5.7 39 439-477 86-124 (126)
86 PRK05680 flgB flagellar basal 95.4 0.051 1.3E-06 29.3 5.9 42 438-479 95-136 (137)
87 PRK12802 flagellin; Provisiona 95.3 0.15 3.9E-06 26.4 10.2 71 410-480 212-282 (282)
88 PRK12807 flagellin; Provisiona 95.1 0.18 4.5E-06 26.0 10.3 69 412-480 219-287 (287)
89 COG1815 FlgB Flagellar basal b 95.0 0.07 1.8E-06 28.5 5.6 41 437-477 91-131 (133)
90 PRK12623 flgB flagellar basal 94.8 0.08 2E-06 28.1 5.4 40 438-477 92-131 (131)
91 PRK12622 flgB flagellar basal 94.5 0.11 2.9E-06 27.2 5.7 37 440-476 98-134 (135)
92 TIGR01396 FlgB flagellar basal 94.4 0.024 6.2E-07 31.3 2.1 41 5-45 3-43 (134)
93 PRK12624 flgB flagellar basal 94.2 0.14 3.4E-06 26.7 5.6 41 438-478 102-142 (143)
94 PRK08869 flagellin; Reviewed 93.4 0.41 1E-05 23.8 9.4 57 424-480 321-377 (377)
95 PRK08412 flgL flagellar hook-a 93.4 0.41 1E-05 23.7 7.6 64 408-471 708-771 (777)
96 PRK06819 flagellin; Validated 92.6 0.54 1.4E-05 23.0 9.0 55 426-480 317-371 (371)
97 PRK08870 flgL flagellar hook-a 91.5 0.73 1.9E-05 22.2 8.6 62 410-471 336-397 (403)
98 PRK07701 flgL flagellar hook-a 90.6 0.89 2.3E-05 21.7 10.7 69 410-480 233-301 (301)
99 PRK12805 flagellin; Provisiona 89.5 1.1 2.8E-05 21.1 9.8 54 426-479 232-285 (287)
100 PRK07192 flgL flagellar hook-a 88.6 1.3 3.2E-05 20.7 8.5 62 409-470 237-298 (305)
101 pfam00700 Flagellin_C Bacteria 88.4 1.3 3.3E-05 20.7 10.1 55 422-478 29-83 (84)
102 PRK12803 flagellin; Provisiona 88.0 1.4 3.5E-05 20.5 8.6 55 426-480 281-335 (335)
103 PRK12717 flgL flagellar hook-a 85.1 2 5E-05 19.5 8.6 46 426-471 472-517 (523)
104 PRK08027 flgL flagellar hook-a 84.4 2.1 5.4E-05 19.3 9.0 70 409-480 248-317 (317)
105 PRK08073 flgL flagellar hook-a 82.8 2.5 6.3E-05 18.9 8.5 60 410-469 220-279 (287)
106 PRK06663 flagellar hook-associ 80.1 3.1 7.8E-05 18.4 8.6 69 410-480 352-420 (420)
107 PRK12687 flagellin; Reviewed 79.2 3.3 8.4E-05 18.2 9.9 53 428-480 259-311 (311)
108 PRK12808 flagellin; Provisiona 76.0 4 0.0001 17.6 9.2 51 430-480 410-460 (460)
109 PRK12718 flgL flagellar hook-a 75.6 4.1 0.00011 17.6 8.1 69 410-480 442-510 (510)
110 PRK13588 flagellin B; Provisio 74.3 4.5 0.00011 17.3 8.1 49 432-480 466-514 (514)
111 PRK08026 flagellin; Validated 72.2 5 0.00013 17.0 8.0 49 432-480 517-565 (566)
112 PRK13589 flagellin; Provisiona 56.8 9.8 0.00025 15.2 9.1 50 431-480 524-573 (573)
113 PRK08411 flagellin; Reviewed 52.9 11 0.00029 14.8 9.1 50 431-480 524-573 (573)
114 PRK12806 flagellin; Provisiona 50.3 13 0.00032 14.6 9.0 51 429-479 423-473 (475)
115 pfam00393 6PGD 6-phosphoglucon 41.8 15 0.00038 14.1 1.6 20 436-458 251-270 (290)
116 PRK08913 flgL flagellar hook-a 40.0 18 0.00046 13.6 8.7 59 408-466 233-291 (302)
117 PRK09287 6-phosphogluconate de 36.8 20 0.00051 13.3 1.6 20 436-458 417-436 (459)
118 PRK00253 fliE flagellar hook-b 33.8 23 0.00058 13.0 6.8 41 438-478 63-103 (105)
119 PTZ00142 6-phosphogluconate de 31.9 24 0.00062 12.8 1.5 10 449-458 445-454 (474)
120 PRK12584 flagellin A; Reviewed 27.6 29 0.00074 12.3 8.9 50 430-479 460-509 (510)
121 TIGR00747 fabH 3-oxoacyl-(acyl 27.4 29 0.00075 12.3 1.2 14 459-472 256-269 (329)
122 COG0362 Gnd 6-phosphogluconate 26.7 30 0.00077 12.2 1.5 18 20-37 10-28 (473)
123 TIGR00873 gnd 6-phosphoglucona 26.1 31 0.00079 12.2 1.1 18 20-37 6-24 (480)
124 pfam04782 DUF632 Protein of un 23.4 35 0.00089 11.8 1.8 16 444-459 228-243 (311)
125 pfam12177 Proho_convert Prohor 20.6 40 0.001 11.5 1.6 11 469-479 28-38 (41)
No 1
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=471.65 Aligned_cols=477 Identities=33% Similarity=0.525 Sum_probs=398.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 91358899999999999998678744202578998126799986046606998998720688788877544455678878
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSENKNMFDKVLHAHSSAIGQQRLL 80 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (480)
|||+++|++|.|||.|+|.+|+|+||||||+||+||+|+|+++++.+.|+.+.+++|..+.|++.+++......++....
T Consensus 1 Msl~s~lnia~sgL~a~Q~al~vtg~NIANanT~GYsRQ~v~~~~~~~Gv~v~~I~R~~d~fl~~q~r~~~s~~~~~~~~ 80 (482)
T PRK07521 1 MSLSSALNTAQSGLTATSRQTSVVSRNIANALTPGYSRRTASLVSGPYGGQVVGISRAQDEALLAQYLLATSAAAAQDTL 80 (482)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97678999999999999999998856353079988241377877448985787799811489999999998777899999
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78998886512677777640113667776687641386753001122101222222100022456566543200011127
Q gi|254780524|r 81 QSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEI 160 (480)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (480)
..+....+..|..+....++...++.|+..|+.+..+|++...+..++..+..++..++..+..|+.++......+...|
T Consensus 81 ~~~l~~le~~~~e~~~~~~l~~~l~~F~~a~q~ls~~P~~~~~r~~v~~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V 160 (482)
T PRK07521 81 ASGLERLASAVGDTDYEGSPSARLSDFQAALQTAASSPDNTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIATSV 160 (482)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999983899888757899999999999986198878999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCCCEEEEEEC
Q ss_conf 87887543432101122234566765210012100001010020124787337711478706970610344412576304
Q gi|254780524|r 161 SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKM 240 (480)
Q Consensus 161 ~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~~~~~~~~~ 240 (480)
.++|.++.++..+|..|......+..+++++|+||.++++++.++++.+....++.+.++..+|..|++.....+++.+.
T Consensus 161 ~~iN~l~~~Ia~LN~qI~~~~~~g~~~ndLlDqRD~ll~eLS~lv~i~~~~~~~G~v~v~~~~G~~Lv~g~~~~~~~~~~ 240 (482)
T PRK07521 161 DTLNTLLAQFEDANNAIVSGTATGRDASDLLDQRDALLKQISQEVGVTTVTRDNNDMALYTDGGVTLFETTPREVTFEPT 240 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCEEEECCCCEEEEEECC
T ss_conf 99999999999999999952478999478899999999999853793899637981799937980775377348997216
Q ss_pred CCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 566676643216733655665-6776667653111011102331367787887655431001234557777776543211
Q gi|254780524|r 241 NSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFI 319 (480)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (480)
.............+++.+... .......+|+++++..++|...+.++.+++.++..++..++..+..+..... +.+.
T Consensus 241 ~~~~~~~~~~~~~~dg~~~~~~~~~~~~~gG~l~gll~~rd~~~~~~~~~Ld~lA~~l~~~~n~~~~~~~~~~~--~~ft 318 (482)
T PRK07521 241 ATYTAGTTGNAVYVDGVPLTGGSSVMPLASGSLAGLFQLRDDIAPTYQAQLDEIARGLITRFAESDPSGGAGDP--GLFT 318 (482)
T ss_pred CCCCCCCCCCCEEECCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCC
T ss_conf 77787776751566570113577776767740355677653107999999999999999998551546788887--6313
Q ss_pred CCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 223456666543322222233----3334666210002456666555566654431024567664201111233334567
Q gi|254780524|r 320 ADGIKDLDNKLCQGISETICV----NPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGIN 395 (480)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.................+.. .....+++..+..... ......+.....++................+.......
T Consensus 319 ~~~~~~~~~~~~~g~a~~i~v~~~~~~~~~~~~~~l~d~~~-~~~~~~~~~g~~g~~~~~~~l~~a~~~~~~~~~~~~~~ 397 (482)
T PRK07521 319 DSGAPADPAGNSAGLAGRISVNAAVDPSQGGDPWLLRDGGI-NGAAYANTTGAAGFSTRLNALVDALSAPRTFDSAAGLS 397 (482)
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 68877676665656433257521125666787323304654-33223678888773789999999850754456656787
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76528999987778876642111232234567999999988766288889999999999999999999999999999999
Q gi|254780524|r 396 TNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTL 475 (480)
Q Consensus 396 ~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~L 475 (480)
+..++.++|..++++++...+.+....+..+..+.++...+.+.|+|+|+|||++||++||+|||+||||+|+|||||+|
T Consensus 398 ~~~s~~~~~~~~v~~ig~~~~~a~~~~~~~~~~~~~l~~~r~svSGVnlDEE~~nLi~~Q~aY~AsArvitt~demldtL 477 (482)
T PRK07521 398 GSSSLMDLAASSLSWLEQQRSSASSEASYQSALLSRAQEALSNATGVDTDDEMALLLDLEQSYAASAKVISTVDEMLDSL 477 (482)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77469999999999999999999999999999999999999841380599999999999999999999999999999999
Q ss_pred HHHHC
Q ss_conf 87409
Q gi|254780524|r 476 LEGVK 480 (480)
Q Consensus 476 in~~R 480 (480)
|||+|
T Consensus 478 ln~vR 482 (482)
T PRK07521 478 LRAVR 482 (482)
T ss_pred HHHCC
T ss_conf 98519
No 2
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=436.98 Aligned_cols=458 Identities=18% Similarity=0.241 Sum_probs=355.9
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-----------------CCCEEEEEEEEEHHHH
Q ss_conf 91-35889999999999999867874420257899812679998604-----------------6606998998720688
Q gi|254780524|r 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-----------------PENVTVVTQRSENKNM 62 (480)
Q Consensus 1 Ms-l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~-----------------~~g~~~~~~~~~~~~~ 62 (480)
|+ ||++|++|+|||+|||++|+||||||||+||+||||+|++|++. |.||.+..++|..+.|
T Consensus 1 M~s~f~~Lnia~SGL~a~Q~~l~vt~~NIANanT~GYsRq~v~~~~~~~~~~~g~~~~~~~gq~G~GV~v~~V~R~~d~~ 80 (500)
T PRK07739 1 MPSTFMGLETARRGLFAQQAALYVTGHNIANANTPGYTRQRVNLAATPPYPTVSRNDPKGPGQMGTGVEAGSIERIRDQF 80 (500)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHH
T ss_conf 98405359999999999999999997757327999805205676434675566655666777543676874588830589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHH
Q ss_conf 78887754445567887878998886512677777640113667776687641386753001122101222222100022
Q gi|254780524|r 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142 (480)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (480)
++.+++......++.......+...+.+|..+ ...++...+..|+..|..+..+|++...+..++..+..++..++..+
T Consensus 81 l~~q~~~~~s~~~~~~~~~~~l~~~e~~~~~~-~~~gls~~l~~ff~a~~~la~~P~~~~~r~~~~~~a~~l~~~~n~~~ 159 (500)
T PRK07739 81 LDNQYRRENTKLGYWETKADALSQMEDIMNEP-SDTGLNKVLDQFWNSLQELSKNPENLGARSVVRQRAQALADTFNYLY 159 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998888779999999999999983897-75628899999999999987398757789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECC
Q ss_conf 45656654320001112787887543432101122234566765210012100001010020124787337711478706
Q gi|254780524|r 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 (480)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~ 222 (480)
..++.++...+..+...|.++|.++.++..+|..|......+..+++++|+||.++++++.++++.+....++...+.+.
T Consensus 160 ~~l~~~~~~~~~~i~~~V~~iN~ll~qia~LN~qI~~~~~~g~~~ndL~DqRd~ll~~LS~~i~i~v~~~~~G~~~~~~~ 239 (500)
T PRK07739 160 KSLTQIQTDLGNEIDVTVKEINSLASQIADLNKQIAKVEPSGYLPNDLYDQRDLLLDELSKLVNIKVSYNKSGGNALAVA 239 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEECEEEEECCCCCEEEEEC
T ss_conf 99999999999999999999999999999999999974158999751112689999986510261999727897356733
Q ss_pred CCEEEECCC---CCEEEEEEC--------CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCC--------CCC
Q ss_conf 970610344---412576304--------5666766432167336556656776667653111011102--------331
Q gi|254780524|r 223 DGTTLFETV---PRDINFEKM--------NSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRD--------SVV 283 (480)
Q Consensus 223 ~g~~l~~~~---~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~ 283 (480)
.|...+... ......... ..... .......................|++.+....++ ..+
T Consensus 240 ~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~l~g~~~~rd~~~~~~~~~~i 318 (500)
T PRK07739 240 EGTFTIEVLDTNGQSLLVDGTDFSVNELEAGYDN-DTGLVTGISVGTTTTGADINPSKGKLKGLLESYGYMSGGEEKGVY 318 (500)
T ss_pred CCEEEEEECCCCCCEEEECCCCCCEECCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCEEEHHHHHCCCCCCCCCCCCH
T ss_conf 7706888505777257642765420003567788-766312210378665566667885110146521443356544435
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 36778788765543100123455777777654321122345666654332222223333346662100024566665555
Q gi|254780524|r 284 PIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLW 363 (480)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (480)
+.++.+++.++..++..++..|..|.+..+.++...+.......... ...+.....+..++..+.....
T Consensus 319 ~~~~~~Ld~lA~~l~~~~N~~~~~G~~l~g~~g~~~f~~~~~~~~~~----A~~i~v~~~v~~~~~~~~~~~~------- 387 (500)
T PRK07739 319 PEMLANLDELAYTFAKAFNEVHSQGYTLNGSSGGDFFDGEADSAKGA----AGTIKVSDDILASLNNIAAASA------- 387 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC----CCEEEECHHHHCCCHHHHHCCC-------
T ss_conf 99999999999999999987641387878998867777888877765----5137876777358033310168-------
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 66654431024567664201111233334567765289999877788766421112322345679999999887662888
Q gi|254780524|r 364 NVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVN 443 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVD 443 (480)
....++........ .............++.++|..++++++.....+....+..+..+.++...++|+|+||
T Consensus 388 --~~~~gd~~~a~~l~------~l~~~~~~~~~~~t~~~~~~~~v~~vg~~~~~a~~~~~~~~~~~~~~~~~~~s~SGVn 459 (500)
T PRK07739 388 --NGEPGDGSNALKLA------NLQDKLNIGLDTTTFQDFYQSLIGKLGVDAQEANRMAENSEVLVDQVDNRRQSVSAVS 459 (500)
T ss_pred --CCCCCCHHHHHHHH------HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf --89999779999999------7333455788987499999999999999999999999999999999999998712966
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999999999999999998740
Q gi|254780524|r 444 LQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 444 L~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
|+|||++||++||+||||||||+|+|||||+|||.+
T Consensus 460 lDEE~~nLi~~Q~aYqAnAkvItt~demldtLlN~~ 495 (500)
T PRK07739 460 LDEEMTNMIQFQHAYNAAARMITAIDEMLDKIINGM 495 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999999999999846
No 3
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=419.64 Aligned_cols=473 Identities=16% Similarity=0.179 Sum_probs=356.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC----------CCCEEEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 35889999999999999867874420257899812679998604----------66069989987206887888775444
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFDKVLHAHSS 72 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (480)
|.++|++|.|||+|+|.+|+|+||||||+||+||.|+|+++... |.||.+..++|..|.|++.+++....
T Consensus 1 lss~l~ia~sgL~a~Q~al~vt~~NIaNanT~GYsRq~v~~~~~~~~~~~~g~~G~GV~v~~I~R~~D~fl~~~~r~~~s 80 (547)
T PRK08147 1 MSSLINTAMSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQAGSTLTAGGWIGNGVYVSGVQREYDAFITNQLRAAQT 80 (547)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHH
T ss_conf 96189999999999999999997756338999806305775224665567874257879806988152899999999987
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 55678878789988865126777776401136677766876413867530011221012222221000224565665432
Q gi|254780524|r 73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 (480)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
..++...........+.+|... ..++...+..|+.+|+.+..+|++...+..++..+..++..++..+..|+.++...
T Consensus 81 ~~~~~~~~~~~l~~le~~f~e~--~~gl~~~l~~f~~a~~~ls~~P~~~~~r~~vi~~A~~La~~~n~~~~~L~~~~~~~ 158 (547)
T PRK08147 81 QSSGLTTRYEQMSKIDNLLSDS--TNSLSTTLQDFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKGV 158 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7779999999999999872888--87578999999999999986889889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECC
Q ss_conf 00011127878875434321011222345--6676521001210000101002012478733771147870697061034
Q gi|254780524|r 153 DKEIELEISNLRRFLSELTVVNDAIKFKT--ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 (480)
Q Consensus 153 ~~~~~~~v~~~n~~~~~~~~~n~~~~~~~--~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~ 230 (480)
+..+...|.++|.++.++..+|..|...+ ..+..+++|+|+||.+++++++++++++....++.+.+++.+|..|++.
T Consensus 159 ~~~i~~~V~~iN~ll~~Ia~LN~qI~~~~~~~~g~~~ndL~DqRD~lldeLS~~v~i~v~~~~~G~v~v~~~~G~~Lv~g 238 (547)
T PRK08147 159 NIAIGTSVDQINNYAKQIASLNDQITRLRGVGAGASPNDLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYTLVQG 238 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCEEEEEC
T ss_conf 99999999999999999999999999853667899915789999999999986609389984898089995797267616
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 4412576304566676643216733655665-677666765311101110233136778788765543100123455777
Q gi|254780524|r 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSS-NQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 (480)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (480)
.....-........+ ......+.++..... .......+|+++|+..+|+..++.++.+++.++..++..++..|..|.
T Consensus 239 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~G~l~gll~~rd~~l~~~~~~Ld~la~~l~~~~n~~~~~G~ 317 (547)
T PRK08147 239 STAYQLAAVPSSADP-TRTTVAYVDGTAGNIEIPEKLLTTGSLGGLLTFRSQDLDQTRNQLGQLALAFADAFNAQHKAGF 317 (547)
T ss_pred CCCEEEEEECCCCCC-CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 851156762267888-6048987248775101576664764044589877603899999999999999999988875066
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCCC-------------------------------CCCCCCCCCCCCCCCCCCC
Q ss_conf 7776543211223456666543---32222-------------------------------2233333466621000245
Q gi|254780524|r 310 NSENVPGLFIADGIKDLDNKLC---QGISE-------------------------------TICVNPQYRSNPSFLRDGG 355 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 355 (480)
+..+..+...+....+...... ..... ..........+...+...+
T Consensus 318 d~~g~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 397 (547)
T PRK08147 318 DANGDKGEDFFSIGKPAVLSNSKNTGDASITAEYTDASAVKATDYKIEFDGTNWQVTRLSDNTTFTVTPDANGDTLEFDG 397 (547)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEECC
T ss_conf 88888665441357754345666777640367742454445566146424776236652677533445678876044036
Q ss_pred CC---------CCCCC--------C-------CCCCCCCCH---HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66---------66555--------5-------666544310---245676642011112333345677652899998777
Q gi|254780524|r 356 SV---------SKKFL--------W-------NVKNLAGYP---DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSI 408 (480)
Q Consensus 356 ~~---------~~~~~--------~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (480)
.. ..... . +........ .......++........ .....+..++.++|..++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ia~~~~~~~~~~d~~~a~~l~~l~~-~~~~~~~~t~~~~~~~~v 476 (547)
T PRK08147 398 LKLTITGTPAANDSFTLKPVSDAIVNMDVLITDESKIAMASEADGGDSDNRNGQALLDLQN-KKLVGGNKSFNDAYASLV 476 (547)
T ss_pred CEECCCCCCCCCCEEEECCCCCHHHCCCEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHH
T ss_conf 3101356666786044034420121132002585653014787778776389999997443-115688746999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88766421112322345679999999887662888899999999999999999999999999999998740
Q gi|254780524|r 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 409 ~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
++++...+.+....+..+..+..+...+.+.|+|||+|||++||++||+||||||+|+|+||||++|||||
T Consensus 477 s~ig~~~~~a~~~~~~~~~~~~~l~~~r~svSGVnlDEE~~nLi~~Q~aY~AsArvist~demldtLlni~ 547 (547)
T PRK08147 477 SDVGNQTATLKTSSTTQANVVTQLTTQQQSVSGVNLDEEYGNLQRFQQYYLANAQVLQTASTLFDALLNIR 547 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999998431766999999999999999999999999999999987759
No 4
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=418.29 Aligned_cols=445 Identities=16% Similarity=0.190 Sum_probs=356.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC----------CCCEEEEEEEEEHHHHHHHHHHHH
Q ss_conf 9135889999999999999867874420257899812679998604----------660699899872068878887754
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFDKVLHAH 70 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~----------~~g~~~~~~~~~~~~~~~~~~~~~ 70 (480)
|+| |++|.|||+|+|.+|+|+||||||+||+||+|+|++|++. +.||.+..++|..|.|+..+++..
T Consensus 1 m~~---ln~a~SgL~a~q~al~vts~NIANanT~GYsRq~v~~~~~~~~~~~~~~~G~GV~v~~I~R~~D~~l~~~~~~~ 77 (456)
T PRK07191 1 MNF---IRTAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVEQSAIGADGQGGVNAGNGVNVDGIRRLSQQYVVMQEWQA 77 (456)
T ss_pred CCH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH
T ss_conf 975---78999999999999999988574389989150366764235777788755677798378870518999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 44556788787899888651267777764011366777668764138675300112210122222210002245656654
Q gi|254780524|r 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 (480)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (480)
....++......++...+.++.. ...++...+..|+..|..+..+|++...+..++..+..++..++..+..++.++.
T Consensus 78 ~s~~~~~~~~~~~l~~le~~~~~--~~~~l~~~l~~f~~a~~~la~~P~~~~~r~~v~~~a~~l~~~~n~~~~~l~~~~~ 155 (456)
T PRK07191 78 NSQQGYYDAGEQYFNALELVVGN--KSTSLATGLNNFFSALSAATQLPDSPPMRQQVIESANAMALRFNNVNNFIVQQKK 155 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88989999999999999986078--9985799999999999999849898899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECC
Q ss_conf 32000111278788754343210112223456676521001210000101002012478733771147870697061034
Q gi|254780524|r 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 (480)
Q Consensus 151 ~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~ 230 (480)
..+..+...|.++|.++.+++.+|..|...+..+..+++++|+||.+++++++++++++....++.+.++..+|.+|++.
T Consensus 156 ~~~~~i~~~V~~iN~ll~qIa~LN~~I~~~~~~g~~~ndL~DqRD~ll~eLS~~i~i~v~~~~~G~v~v~~~~G~~LV~g 235 (456)
T PRK07191 156 SIGQQRDATVKQINSLTRSIADYNQKILKNRSDGNNISDLLDQRDLQIKKLSGLIEVRVVQQEDGTYRVSVKNGQPLVNG 235 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCEEEEC
T ss_conf 99999999999999999999999999997306899816789999999999875228289987999889995798276507
Q ss_pred CCC-EEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 441-2576304566676643216733655665677666765311101110233136778788765543100123455777
Q gi|254780524|r 231 VPR-DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 (480)
Q Consensus 231 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (480)
... .+....... ... .....+.+... ......+|+++++..+++..++.++.+++.++..+++.++..+..+.
T Consensus 236 ~~~~~l~~~~~~~--g~~-~~~~~~~~~~~---~~~~~~gG~l~gl~~~r~~~l~~~~~~Ld~lA~~la~~~N~~~~~g~ 309 (456)
T PRK07191 236 AVAAELAVDTSSV--GTQ-KLTLHFSGATQ---GMNMSCGGQLGGLNDYELTTLKPLQDSTQEMAKTVADKFNDQLTKGF 309 (456)
T ss_pred CEEEEEEEEECCC--CCC-EEEEEECCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7035788750589--861-37998568545---57788875257788878743899999999999999999999873266
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 77765432112234566665433222222333334666210002456666555566654431024567664201111233
Q gi|254780524|r 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
+..+.++...+............ .. ...+..+... ......++................
T Consensus 310 ~~~g~~G~~~f~~~~~~~~~~~~-------~~---~~~~~~~~~~---------~~~~~~gd~~~~~~l~~l~~~~~~-- 368 (456)
T PRK07191 310 DMNGAPGKPLFTFNPSDPNGMLQ-------LS---AIKPEELALS---------GDPKPPGDNSNLFELLEIRSTPVD-- 368 (456)
T ss_pred CCCCCCCCCCEECCCCCCCCCEE-------EC---CCCHHHHCCC---------CCCCCCCCHHHHHHHHHHHCCCCC--
T ss_conf 78899886550248887553100-------02---2477650114---------788899988999999970146656--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33456776528999987778876642111232234567999999988766288889999999999999999999999999
Q gi|254780524|r 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 (480)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~D 469 (480)
.. ..+..++.++|..++++++...+.+....+..+..+.++...+.+.|+|||+|||++||++||+||||||+|+|+|
T Consensus 369 -~~-g~~~~t~~~~~~~lvs~ig~~~~~a~~~~~~~~~~~~~~~~~r~svsGVnlDEE~~nLi~~Q~aY~AsArvitt~d 446 (456)
T PRK07191 369 -LP-GMGNVSLGDAATALVGYIAITSNQNHSELENAENVRNQAERYWESFSGVNNDEEAMNLMEYQRAYQSNMKVIATGD 446 (456)
T ss_pred -CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -67-8787779999999999999999999999999999999999999846581789999999999999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998740
Q gi|254780524|r 470 KMLQTLLEGV 479 (480)
Q Consensus 470 emlq~Lin~~ 479 (480)
|||++||||+
T Consensus 447 emldtLln~V 456 (456)
T PRK07191 447 KLFSDLLALV 456 (456)
T ss_pred HHHHHHHHHC
T ss_conf 9999999539
No 5
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=418.97 Aligned_cols=471 Identities=19% Similarity=0.239 Sum_probs=356.0
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE-----------------CCCCEEEEEEEEEHHHH
Q ss_conf 91-3588999999999999986787442025789981267999860-----------------46606998998720688
Q gi|254780524|r 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI-----------------SPENVTVVTQRSENKNM 62 (480)
Q Consensus 1 Ms-l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~-----------------~~~g~~~~~~~~~~~~~ 62 (480)
|. +|++|++|.|||+|+|.+|+|+||||||+||+||.|+|+.+++ +|.||.+..++|..|.|
T Consensus 1 M~s~F~~L~ig~sgL~a~Q~aL~ttg~NIANvnT~GYsRQ~v~~~a~~p~~~~~~~~~~~~G~~G~GV~v~~I~R~~D~f 80 (628)
T PRK06665 1 MDSTFSGIEIGKRSLFAHKQAMQTTGHNISNASKPGYSRQRVTMKTEDPLYAPQLNRANKPGQIGQGVTIQSIERVRDEL 80 (628)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHH
T ss_conf 98524269999999999999999885766417998805217664123664456545455678767888972798715189
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHH
Q ss_conf 78887754445567887878998886512677777640113667776687641386753001122101222222100022
Q gi|254780524|r 63 FDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSA 142 (480)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (480)
++.+++......++...........+.+|... ...++...+..||.+|+.+..+|++...|..++..+..++..++..+
T Consensus 81 l~~q~r~~~s~~~~~~~~~~~l~~le~~f~e~-~~~gl~~~l~~ff~a~q~la~~P~~~~~R~~vl~~a~~L~~~~n~~~ 159 (628)
T PRK06665 81 LDDRIIEESHRLGYWASRDKYISLLEQVYNEP-EDQSLRTRLDDFWSSWQDLSNYPEGLAERQVVLERAQALGERIEDRY 159 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999888779999999999999983898-77868999999999999998686888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECC
Q ss_conf 45656654320001112787887543432101122234566765210012100001010020124787337711478706
Q gi|254780524|r 143 REVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 (480)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~ 222 (480)
..|+.++...+..+...|.++|.++.+++.+|..|......+..+++|+|+||.+++++|+++++++....++.+.+...
T Consensus 160 ~~L~~~~~~~n~~i~~~V~~iN~l~~~Ia~LN~qI~~~~~~g~~~NdLlDqRD~ll~eLS~~v~i~v~~~~~~~~~~~~~ 239 (628)
T PRK06665 160 RSLERIRDMANDEIEITTEEVNNYLRNIADLNEQIVKSQAMGDNPNDLMDKRDLLVEKLSNLIDVSIENRSDPNEFLIHI 239 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEC
T ss_conf 99999999999999999999999999999999999972057999247789999999999866392899816995699962
Q ss_pred CCEEEECCCCC-EEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 97061034441-25763045666766432167336556656776667653111011102331367787887655431001
Q gi|254780524|r 223 DGTTLFETVPR-DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSF 301 (480)
Q Consensus 223 ~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (480)
+|..|++.... .+........ ..... ..+... .......+|+++++..+||..++..+.+++.++..+++.+
T Consensus 240 ~G~~LV~g~~~~~l~~~~~~~~--~~~~~-i~~~~~----g~~~~~~~G~lggll~~Rd~~l~~~~~~ld~lA~~l~~~~ 312 (628)
T PRK06665 240 EGQHLVQGNIANEFDLEANNGP--DGTWD-ILWSAN----GDPALLRTGKLGALIEIRDTEIRNEINELDNLAINIMDLV 312 (628)
T ss_pred CCEEEEECCCEEEEEEEECCCC--CCEEE-EEECCC----CCEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8836540674457998735899--84189-998268----9621025862123565313314889988879999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------------------------CCCCCCCCCCCCCC--------
Q ss_conf 23455777777654321122345666654-----------------------------33222222333334--------
Q gi|254780524|r 302 SEKDPIAGNSENVPGLFIADGIKDLDNKL-----------------------------CQGISETICVNPQY-------- 344 (480)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~-------- 344 (480)
+..|..|.+..+..+...+.......... ........+.....
T Consensus 313 N~~~~~G~~l~g~~g~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 392 (628)
T PRK06665 313 NEIHKDGFGLNGKTGRSFFKQEYKLTNTRGRYDSNGDGQFDSVHIFRITGTNEIDPDEKIGFSGTLTFQASNKNGFIEIP 392 (628)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEECC
T ss_conf 89987275878876522223432234554321246776444302664046644465433554534675205787613324
Q ss_pred -------------------------CCCCCCC---------------------------------CCCCCCCCCC-----
Q ss_conf -------------------------6662100---------------------------------0245666655-----
Q gi|254780524|r 345 -------------------------RSNPSFL---------------------------------RDGGSVSKKF----- 361 (480)
Q Consensus 345 -------------------------~~~~~~~---------------------------------~~~~~~~~~~----- 361 (480)
..+.... ...+......
T Consensus 393 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~ 472 (628)
T PRK06665 393 YNATDTVNDVIKRINNSNAQVTAYINHNNKLELKATKEEDDDNPNFRIRHIEDSGLFLTGYTGILNASGPEGAYDYQRIG 472 (628)
T ss_pred CCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67763067788752145544213315787434303334567776402320256641003555301246766543334566
Q ss_pred -----CCCCCCCC-----------CCH-H-------------------HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -----55666544-----------310-2-------------------45676642011112333345677652899998
Q gi|254780524|r 362 -----LWNVKNLA-----------GYP-D-------------------LINHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 (480)
Q Consensus 362 -----~~~~~~~~-----------~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (480)
..++.... ... . ......++...............+.+|.++|.
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~a~~~~v~~~~~~d~~~ia~~~~~~~~~~~~gdn~~al~l~~l~~~~~~~~~~~T~~d~y~ 552 (628)
T PRK06665 473 TINKLQANGADYSISPLKHPAAWFKVADSIASDPSNIAAGIGKPTNGTHIGDNNAALRIASLRNSPVMIGKSKTLDDFFA 552 (628)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 42222457653224666676531032455405868762146667788888965999999861126512689812999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77788766421112322345679999999887662888899999999999999999999999999999998740
Q gi|254780524|r 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 406 ~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
.+++.++...+.+....+..+..+..+...+.+.|+|+|+||++|||++||+|||+||+|+|+||||++|||.+
T Consensus 553 ~lv~~vG~~~~~a~~~~~~~~~l~~~~~~~r~svSGVnlDEE~anLikfQqaY~AsArvIst~dem~dtLln~l 626 (628)
T PRK06665 553 NTASNIGIKGQIAEITKNSQNQILKELTDMRQSVSGVNKDEELANMIEFQQSYNASAKFINVSNELLDTIINRM 626 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999999999998763602999999999999999999999999999999998734
No 6
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=100.00 E-value=0 Score=419.59 Aligned_cols=477 Identities=23% Similarity=0.344 Sum_probs=368.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE----------CCCCEEEEEEEEEHHHHHHHHHHHH
Q ss_conf 913588999999999999986787442025789981267999860----------4660699899872068878887754
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHAH 70 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~----------~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (480)
||||+.|++|.|||+|||.+|+|+||||||+||+||.|+||.+.+ .|.||.+..++|..+.|+..+++..
T Consensus 1 ms~~s~lnta~sgl~a~q~~l~vtg~NIsNant~gYsRQrv~~~~~~~~~~~~~~~G~Gv~V~sI~R~~d~fl~~q~~~a 80 (552)
T COG1256 1 MSLFSLLNTALSGLNAAQAALDVTGHNISNANTPGYSRQRVIQTTNIPYLGGGLNVGTGVNVVSIQRLRDEFLTNQYRNA 80 (552)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH
T ss_conf 95267799999999999999987561335689998630210432356643576666676488863116879999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 44556788787899888651267777764011366777668764138675300112210122222210002245656654
Q gi|254780524|r 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 (480)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (480)
....++...........+.++.... ..++.+.+++|+..|+.+..+|.+...+..++.++..++..++..+..|..++.
T Consensus 81 ~s~~s~~~t~~~~L~~le~ll~~~~-~~sl~~~L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~ 159 (552)
T COG1256 81 NSQSSYLDTRASQLSQLESLLSEPS-ESSLSTLLNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRK 159 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7666689999999999999847976-353789999999999999859564789999999999999999899999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECC
Q ss_conf 32000111278788754343210112223456676521001210000101002012478733771147870697061034
Q gi|254780524|r 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 (480)
Q Consensus 151 ~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~ 230 (480)
+.+..+...|.++|.++.++.++|..|.+....+..+++++|+||+++.+++.++++.+..+.++.+.++...|..++..
T Consensus 160 ~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~~~~g~~~NdLlDqRD~Lv~eLs~~i~i~V~~~~~~~~~~~~~~G~~lv~g 239 (552)
T COG1256 160 DINAEIAATVDEVNSLLKQIADLNKQIRKVKAAGNDPNDLLDQRDQLVDELSQLIGISVSKREDGDYNLTTGNGTTLVEG 239 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCEEECCC
T ss_conf 88689999999999999999999999997304799930677779999999974625599984799767995688321146
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCCC-CCCCCCCCCCCCCCCCHHHC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 44125763045666766432167336556-65677666765311101110-23313677878876554310012345577
Q gi|254780524|r 231 VPRDINFEKMNSYTVTSESNPIFIDGVVV-SSNQGSAVPKGKIKALLQIR-DSVVPIFQNQLDEMARVLIGSFSEKDPIA 308 (480)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (480)
..... +.......+.......+.++.+. ..........|++++++.+| ++..+.... +..++..+.+.++..+..+
T Consensus 240 ~~~~~-~~~~~~~~d~~~~~v~~~~~~~~~~~~~~~~~~~G~L~gll~~r~~~~~~~~~~-l~~~a~~~~D~~n~~~~~~ 317 (552)
T COG1256 240 SEAKV-FAPLPGSDDETRGNVIYVDGDDEKAGNITNTLSGGKLGGLLDLRSDELAPTLNT-LGQLALSFLDEFNKGHGAG 317 (552)
T ss_pred CCCEE-EEECCCCCCCCCCEEEEEECCCHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 51005-663345368876358996078412123200246554788998751310688987-8889999999998766654
Q ss_pred CCCCCCCCCCCCCCCCCCCC--------------------------------CCCCCCCCCCCCCCC-------CCCCCC
Q ss_conf 77776543211223456666--------------------------------543322222233333-------466621
Q gi|254780524|r 309 GNSENVPGLFIADGIKDLDN--------------------------------KLCQGISETICVNPQ-------YRSNPS 349 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~-------~~~~~~ 349 (480)
.+..+..+...+.....+.. ............... ..+.+.
T Consensus 318 ~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~g~~~is~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~G~~~ 397 (552)
T COG1256 318 LDLNGAEGADFFNIEGLPVILTNDKSNGNISSGGFTVSDANKVGATTIPVTGDVVPGIATRLSDNVTFQISPDAANGNPT 397 (552)
T ss_pred HHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 40265203331144467410013223455556604772365456666554576653200113556433247000268741
Q ss_pred CCCCCCCCCC-CCCCC--CCCCCCCHHHH---------------------HHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 0002456666-55556--66544310245---------------------676642011112333345677652899998
Q gi|254780524|r 350 FLRDGGSVSK-KFLWN--VKNLAGYPDLI---------------------NHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 (480)
Q Consensus 350 ~~~~~~~~~~-~~~~~--~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (480)
.......... ....+ ........... ....+...............+..++.++|.
T Consensus 398 ~~~dgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~D~~n~~~~~~~~~~~~~~~~~~T~~d~y~ 477 (552)
T COG1256 398 LTFDGGANFAGGYVVNDAFTGKAASSSLLNLAVLATPSTKVAFAAPDFTIFDNANALALLNLQNNKKLVGGKSTFSDYYA 477 (552)
T ss_pred EEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 12045301256543455445776532124431134665434435655667741338887402234445778657999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 777887664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 406 ~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
++++|++..++.+....+..+..+.++...+.+.|+|+|+|||+|||++|++|+||||+|+|+|+||++|||++|
T Consensus 478 ~l~~~i~~~~~~a~~~~~~~~~~l~~~~~~~~S~SGVnlDEE~anLi~~Qq~Y~AsAKvI~tvd~m~dtLln~~~ 552 (552)
T COG1256 478 GLVGWIGIKASTASSESDAKEALLNQLTSERQSISGVNLDEEMANLIQFQQAYQASAKVIQTVDEMLDTLLNIVG 552 (552)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 888999998887411214799999999999860137787799999999999999999999999999999986429
No 7
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=408.34 Aligned_cols=475 Identities=18% Similarity=0.234 Sum_probs=330.6
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE----------CCCCEEEEEEEEEHHHHHHHHHHH
Q ss_conf 91-3588999999999999986787442025789981267999860----------466069989987206887888775
Q gi|254780524|r 1 MS-LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHA 69 (480)
Q Consensus 1 Ms-l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~----------~~~g~~~~~~~~~~~~~~~~~~~~ 69 (480)
|+ ||++|++|.|||+|+|++|+|+||||||+||+||.|+|+++.+ +|.||.+..++|..+.|++.+++.
T Consensus 1 M~s~fs~Lnia~sGL~a~Q~aL~vtg~NIANanT~GYsRQ~v~~~~~~~~~~~~g~~G~GV~v~~I~R~~D~fl~~q~r~ 80 (612)
T PRK08471 1 MGGIFSSLNTGYTGLQAHQVQVSVTGNNISNASSEFYTRQRVVQTAQTALNTGPGNVGTGTQIETIVRIHDEFVYSRYKK 80 (612)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHH
T ss_conf 97056589999999999999999986767407899815016774044661257886556779766987035799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 44455678878789988865126777776401136677766876413867530011221012222221000224565665
Q gi|254780524|r 70 HSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIR 149 (480)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (480)
..+..++......+....+.+|... ...++...+..||.+|+.+..+|++...|..++..+..++..++..+..|+.++
T Consensus 81 ~~s~~~~~~~~~~~l~~le~l~~~~-~~~gl~~~l~~ff~a~q~la~~P~s~~~R~~vl~~a~~L~~~~n~~~~~l~~~~ 159 (612)
T PRK08471 81 ASTELEYTDYEFSTLQEASAYFPDL-DGTGLLKDLQDYFNAWNDFASNPDESAQKQALAKKTETLTNNINDTRARLYTLQ 159 (612)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999889999999999999870898-877489999999999999986889989999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCEEEEEEEECC--------------
Q ss_conf 432000111278788754343210112223456--6765210012100001010020124787337--------------
Q gi|254780524|r 150 ADADKEIELEISNLRRFLSELTVVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRN-------------- 213 (480)
Q Consensus 150 ~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~--~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~-------------- 213 (480)
...+..+...|.++|.++.+++.||..|..... .+..+++|+|+||.+++++++++++.+....
T Consensus 160 ~~~n~~i~~~V~~iN~l~~~Ia~LN~qI~~~~~~~~~~~andLlDqRD~ll~~LS~lv~i~v~~~~~~~~~~~~~~~~~~ 239 (612)
T PRK08471 160 KKVNEELKVTVDEVNSLGKQIAEINKQIQEVEAGKTLKHANELRDKRDELELTLSKLVGANVFKSSIKSNSRIDTTIADF 239 (612)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEECCCEEECC
T ss_conf 99999999999999999999999999999854578889825678899999999987629478842666520003301037
Q ss_pred CCEEEEECCCCEEEECCCC-CEEEEEECCCCCCCCCCCEEEE-CCCCCCCCCCCCCCCCCCCCCHHHC-----------C
Q ss_conf 7114787069706103444-1257630456667664321673-3655665677666765311101110-----------2
Q gi|254780524|r 214 NNDMVVYTSDGTTLFETVP-RDINFEKMNSYTVTSESNPIFI-DGVVVSSNQGSAVPKGKIKALLQIR-----------D 280 (480)
Q Consensus 214 ~~~~~v~~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~-----------~ 280 (480)
++.+.+.. +|..+++... .++....... ... ...+.+ ..............+|++++...++ +
T Consensus 240 ~~~~~~~~-gG~~lv~g~~~~~l~~~~~~~--~~~-~~~i~~~~~~~~~~~~~~~~~~G~lg~~~~~r~~~~~~~~~~~~ 315 (612)
T PRK08471 240 GESYNLNI-GGFNIVDGVNFHPLVLKSSDN--KGG-LYQIYYERDDFKVIDITDKINGGKVGALLDLRGRYNGGSGGTLD 315 (612)
T ss_pred CCEEEEEE-CCEEECCCCCCCEEEEECCCC--CCC-CEEEEEECCCCCEECCCCCCCCCEEEEHHHHHCCCCCCCCCCCC
T ss_conf 86289976-887502477422047623788--886-13899845887420045656786010021210232443222221
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-----------------------CCCCCCCCCCCCC-
Q ss_conf 3313677878876554310012345577777765432112234-----------------------5666654332222-
Q gi|254780524|r 281 SVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGI-----------------------KDLDNKLCQGISE- 336 (480)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~- 336 (480)
..+..+...++.+...+...++..+..+............... .............
T Consensus 316 ~~~~~~~~~ld~~a~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~ 395 (612)
T PRK08471 316 GKIQDYIDLLDTFAKTLIESTNNIYASSASHSITSDPLSLNSDEPLVNSNYNIKNGSFDIVIYDTDGKEIARKTINIDPI 395 (612)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCC
T ss_conf 03899999998999999997657653245445667753346775444567555667531377448765023330103665
Q ss_pred --------CC--------------------CCC----CC--------CCCCCCC-----CCCCCCC--------------
Q ss_conf --------22--------------------333----33--------4666210-----0024566--------------
Q gi|254780524|r 337 --------TI--------------------CVN----PQ--------YRSNPSF-----LRDGGSV-------------- 357 (480)
Q Consensus 337 --------~~--------------------~~~----~~--------~~~~~~~-----~~~~~~~-------------- 357 (480)
.+ ... .. ....+.. +...+..
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~ 475 (612)
T PRK08471 396 TTMNDIVQQINANTDDNNDNNANNDVDDYFTASFNYDTKTGDGLFVIQPKNASQGYFVSIEDNGTNFAGALGLNRFFDGD 475 (612)
T ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 33034666512566666665434443310100113566667651342356777751688606886544534555544677
Q ss_pred -CCCCCCC-------------CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -6655556-------------66544310245676642011112333345677652899998777887664211123223
Q gi|254780524|r 358 -SKKFLWN-------------VKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHM 423 (480)
Q Consensus 358 -~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~ 423 (480)
......+ .....++................+........+.++.++|..+++++++.++.+....+
T Consensus 476 ~a~~i~v~~~~~~d~~~i~~~~~~~~gdn~~a~~l~~l~~~~~~~~~~~~~~~~~T~~~~y~~lvs~vG~~~~~a~~~~~ 555 (612)
T PRK08471 476 DASNIKLNKEYKKDPTTIRAWLAPVNGNNDVANKMIQLQYDKVNFYNNKGTIKNETIEEYYRFLTGKIASDTEKNNRIND 555 (612)
T ss_pred CCCCEEECCHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 63313422120268576304578888961899999974106522004777767864999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 424 ~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
..+..+.++...+.+.|+|+|+||++|||++||+||||||||+|+||||++||+|||
T Consensus 556 ~~~~~~~~~~~~r~svSGVnlDEE~~nLik~QqaY~AsArvista~em~dtLL~i~~ 612 (612)
T PRK08471 556 TNKSLLNSVKKEYQSISGVSTDEELTNLIKFQSSYGAAAKIITTVDQMLDTLLGIKQ 612 (612)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999985106039999999999999999999999999999999982449
No 8
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway . The amino acid sequences of the hook protein and of the three hook-associated proteins of Salmonella typhimurium have been deduced from the DNA sequences of their structural genes (flgE, flgK, flgL and fliD respectively). These sequences have been compared with each other and with those for the filament protein (flagellin) and four rod proteins. The hook protein was found to be most similar to the distal rod protein (FlgG) and the proximal hook-associated protein (HAP1), which are thought to be attached to the proximal and distal ends of the hook, the similarities being most pronounced near the N- and C-termini. It is thought that the axial proteins may adopt amphipathic alpha-helical conformations at their N- and C-termini. These regions of the filament and hook are believed to be responsible for quaternary interactions between subunits. Interaction between N- and C-terminal alpha-helices may be important in the formation of the axial structures of the flagellum. Although consensus sequences have been noted, no consensus extends to the entire set of axial proteins. Thus the basis for recognition of a protein for export by the flagellum-specific pathway remains to be identified.; GO: 0005198 structural molecule activity, 0009296 flagellum biogenesis, 0009424 flagellin-based flagellum hook.
Probab=100.00 E-value=0 Score=409.83 Aligned_cols=452 Identities=22% Similarity=0.304 Sum_probs=363.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE----------------CCCCEEEEEEEEEHHHHHHHHHH
Q ss_conf 88999999999999986787442025789981267999860----------------46606998998720688788877
Q gi|254780524|r 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------------SPENVTVVTQRSENKNMFDKVLH 68 (480)
Q Consensus 5 ~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~----------------~~~g~~~~~~~~~~~~~~~~~~~ 68 (480)
+.|++|.+||+|+|.+|+|+|+||||+||+||.|+|+++++ +|.||.+..++|+.|.++..++.
T Consensus 1 ~~l~~a~~gL~a~q~al~~~~~NIANant~GY~Rq~a~~~~~~~~~~~~~~~~~~~~~G~GV~v~~i~R~~d~~l~~q~~ 80 (495)
T TIGR02492 1 SLLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAELTASPAGGQGLNATEGGLQIGTGVKVTSIRRIQDQFLDNQLR 80 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHH
T ss_conf 94789999999999999987436224679896046677503334321110001466555646986554415489999998
Q ss_pred HHHHHH-HHHHHHHHHHHHH-HHHCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 544455-6788787899888-65126777776-40113667776687641386753001122101222222100022456
Q gi|254780524|r 69 AHSSAI-GQQRLLQSFEALK-EMMSADDHYNN-SPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREV 145 (480)
Q Consensus 69 ~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (480)
...... ++......-+... ..|........ ++...+..|+.+|+.++.+|.+...+..++..+..++..++.....|
T Consensus 81 ~~~s~~~~~~~~~~~~l~~~e~~~~~~~~~~~~sl~~~L~~Ff~al~~l~~~P~~~~~r~~~~~~~~~la~~~n~~~~~L 160 (495)
T TIGR02492 81 RANSSAGGYADSRASSLSKIEQIFNDTDESGLGSLSTDLNNFFNALQELAKNPDSEALRQAVLESAQALANQFNQTSSEL 160 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87755678999999999999986168887754462889989999999997087887899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECC
Q ss_conf 566543200011127878875434321011222345---66765210012100001010020124787337711478706
Q gi|254780524|r 146 QKIRADADKEIELEISNLRRFLSELTVVNDAIKFKT---ASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTS 222 (480)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~---~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~ 222 (480)
+.++..++..+...|.+||.++.++..+|..|...+ ..+..+++++|+||.++.+++.++++.+....++.+.|++.
T Consensus 161 ~~~~~~~~~~i~~~V~~iN~l~~~ia~~N~~I~~~~g~~~~g~~andL~DqRD~ll~~Ls~~~~i~~~~~~~G~~~v~~~ 240 (495)
T TIGR02492 161 TDLQKNINAEIKSAVTEINSLLKQIASLNKEIQQVEGGKASGQDANDLLDQRDLLLKELSQLIGISVSENEDGTVNVYTG 240 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEC
T ss_conf 99997565578899999999999999876886400278778777677874499999998867260378826885688873
Q ss_pred CCEEEECC------CCCEEEE-EECCCCCCCCCCCEEEECCC-----CCCCCC-CCCCCCCCCCCCHHHC--------CC
Q ss_conf 97061034------4412576-30456667664321673365-----566567-7666765311101110--------23
Q gi|254780524|r 223 DGTTLFET------VPRDINF-EKMNSYTVTSESNPIFIDGV-----VVSSNQ-GSAVPKGKIKALLQIR--------DS 281 (480)
Q Consensus 223 ~g~~l~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~g~~~~~~~~~--------~~ 281 (480)
.|..|++. ....... ................+... ...... ......|.++|+..++ +.
T Consensus 241 ~G~~Lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~gl~~~r~~~S~~~~~~ 320 (495)
T TIGR02492 241 SGQVLVDGYDLNKSLAATVTGLSSTSPLTADTAGSKVGLQGVYLPSGSSKVTISSDKLQGGKLGGLLDLRINDSEGKEDG 320 (495)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 77212022023433203465454421000112344201002102566521001100002550444543431023666443
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31367787887655431001234557777776543211223456666543322222233333466621000245666655
Q gi|254780524|r 282 VVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKF 361 (480)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (480)
.++.++.+++.++..++..++..|..|.+..+.+ ...+ ... ................ ..
T Consensus 321 ~~~~~~~~lD~~A~~la~~~n~~~~~G~~~~~~~-~~~~-~~S-~s~~~~~~~~~~~~~~------------------~~ 379 (495)
T TIGR02492 321 VLPDLQSQLDQLAKTLANEVNEVHQSGADLTGNA-KDLF-ATS-LSSGDAEEIAAAAKGP------------------GG 379 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCC-CHH-HHHCCHHHHHHCCCCC------------------CC
T ss_conf 0689999999999999999887763353457764-2001-112-3202235543101355------------------64
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 55666544310245676642011112333345677652899998777887664211123223456799999998876628
Q gi|254780524|r 362 LWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVG 441 (480)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SN 441 (480)
..+ ...............................+.+|.++|..+++++++..+.+....+..+..+.++...+++.|+
T Consensus 380 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~s~~g~~~~~a~~~~~~~~~~l~~~~~~~~s~sG 458 (495)
T TIGR02492 380 DVK-AAGDGDNDNALNLINLLFDKLTGLGATTGIGNESLDDFYASLVSQIGSDASQAESALEAQEALLNQLQEARSSISG 458 (495)
T ss_pred CCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 100-3789874113445565544311332212455443899998877899999999888888899999999998876416
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8889999999999999999999999999999999874
Q gi|254780524|r 442 VNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 (480)
Q Consensus 442 VDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~ 478 (480)
|+|||||++||.+||+|+||||||+|+||||++||+|
T Consensus 459 Vs~DEE~~~l~~~Q~~Y~A~ak~i~t~d~m~d~LL~~ 495 (495)
T TIGR02492 459 VSLDEEMANLIQYQKAYQASAKVISTVDEMLDSLLNL 495 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6799999999999988999999999999999999639
No 9
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=100.00 E-value=0 Score=405.58 Aligned_cols=470 Identities=16% Similarity=0.181 Sum_probs=349.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE----------CCCCEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 88999999999999986787442025789981267999860----------46606998998720688788877544455
Q gi|254780524|r 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHAHSSAI 74 (480)
Q Consensus 5 ~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (480)
+.|++|.|||+|+|.+|+|+||||||+||+||.|+|++|++ +|.||.+..++|..|.|...+++......
T Consensus 2 sll~ig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~~~~~~~~~~~~~~~G~Gv~v~~i~R~~D~fl~~~~~~~~s~~ 81 (624)
T PRK12714 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITDVGRVADQLAISRLLDSGGEL 81 (624)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 71789999999999999988475651689980312778751367556786410578973799826189999999987788
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67887878998886512677777640113667776687641386753001122101222222100022456566543200
Q gi|254780524|r 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 (480)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (480)
++......+....+.++..+ ..++...+..||..|+.+..+|++...|..++..+..++..++..+..|..++...+.
T Consensus 82 ~~~~~~~~~~~~~e~~~~~~--~~~l~~~l~~ff~a~~~ls~~P~~~~~R~~vl~~a~~L~~~~~~~~~~l~~~~~~~~~ 159 (624)
T PRK12714 82 SRLQQLSSLSNRVDALYSNT--ATNVAGLWSNFFDSTSALSSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNS 159 (624)
T ss_pred HHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999862888--7647899999999999998688887999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCCCE
Q ss_conf 01112787887543432101122234566765210012100001010020124787337711478706970610344412
Q gi|254780524|r 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 (480)
Q Consensus 155 ~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~~~ 234 (480)
.+...|.++|.++.+++.+|..|... .+..+++|+|+||.+++++++++++.+....++.+.++..+|.+|++.....
T Consensus 160 ~i~~~v~~iN~l~~qIa~LN~~I~~~--~~~~~~dL~DqRD~ll~eLS~~v~i~~~~~~~g~v~v~~~~G~~Lv~g~~~~ 237 (624)
T PRK12714 160 GLTSSVDEVNRLTQQIAKINGTIGSS--IQNAAPDLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAS 237 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEECCCCEEEECCCEE
T ss_conf 99999999999999999999999753--4899467788999999999766082799858982899944981788447436
Q ss_pred EEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 57630456667664321673365566567766676531110111023313677878876554310012345577777765
Q gi|254780524|r 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 (480)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (480)
.-.......... .....+..............+|+++++..+|+..++..+.+++.++..+++.++..|..|.+..+.
T Consensus 238 ~l~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~gG~l~gl~~~rd~~l~~~~~~l~~la~~l~~~~N~~h~~G~dl~g~ 315 (624)
T PRK12714 238 KLTTVADPYQPT--KLQVAMQTQGQNVSLSPSSLGGQIGGLLEFRSSVLEPTQAELGRLAVGMASSFNAGHSQGMDLYGA 315 (624)
T ss_pred EEEEECCCCCCC--CEEEEEECCCCEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 899832788875--058999528842533666677412367760003326678888889998999877887617776686
Q ss_pred CCCCCCCCCCCCCCCCC---C---------------CCCCCCC------------CCC----------------------
Q ss_conf 43211223456666543---3---------------2222223------------333----------------------
Q gi|254780524|r 315 PGLFIADGIKDLDNKLC---Q---------------GISETIC------------VNP---------------------- 342 (480)
Q Consensus 315 ~~~~~~~~~~~~~~~~~---~---------------~~~~~~~------------~~~---------------------- 342 (480)
.+...+....+...... . ....... ...
T Consensus 316 ~g~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 395 (624)
T PRK12714 316 LGGNFFNIGSPTTAANPSNTGTASLSASFSNLGAVDGQNVTLSFDGTNWKATRADTGSAVPLTGTGTAADPLVLNGVSMV 395 (624)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCEEECCCCCCCCCCEEECCEEEE
T ss_conf 67652024775411476766642688885355654565069998256228985378852104666677775011463566
Q ss_pred ----CCCCCCCCCCCCCCCCCCC---------------------CCCCCC------------C-----------------
Q ss_conf ----3466621000245666655---------------------556665------------4-----------------
Q gi|254780524|r 343 ----QYRSNPSFLRDGGSVSKKF---------------------LWNVKN------------L----------------- 368 (480)
Q Consensus 343 ----~~~~~~~~~~~~~~~~~~~---------------------~~~~~~------------~----------------- 368 (480)
...++...+.......... ..+... .
T Consensus 396 ~~~~~~~~d~~~~~~~~~~a~~~~~~~~d~~~ia~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 475 (624)
T PRK12714 396 VGGTPASGDKFLLQPTAGLAGSLSVAITDPSRIAAATPVKATATTANLGTGKISDVKVTNAQNPALLTPSSVEFIDANQY 475 (624)
T ss_pred ECCCCCCCCEEEECCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCE
T ss_conf 44766678757842342345552488517555320264211212244566402113521567644468642022046512
Q ss_pred CCCH-------------------------------------HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4310-------------------------------------245676642011112333345677652899998777887
Q gi|254780524|r 369 AGYP-------------------------------------DLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWL 411 (480)
Q Consensus 369 ~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (480)
.... .......++..............+..++.++|..+++.+
T Consensus 476 ~~~~~~~~~~~~g~~~~~~g~~~~l~~~~~~~d~~~~~~~~~g~~Dn~na~~la~l~~~~~~~~~t~Tl~~~y~~lvs~v 555 (624)
T PRK12714 476 TIDGAGPFAYTPGQTISANGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLAKVEDAKALNGGTVTLNGALSGLTTSV 555 (624)
T ss_pred EECCCCCCCCCCCCEEECCCCEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHH
T ss_conf 42267754446775121166025403675556510014677777875889999840434102688477999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 412 ~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
+..++.+....+..+..+.++...+.+.|+|+|+|||+|||++||+|||+||+|+|+|||||+||+++|
T Consensus 556 G~~a~~a~~~~~~~~~l~~~~~~~r~SvSGVnlDEE~anLikfQqaY~AaArvIttadem~dtLL~~vR 624 (624)
T PRK12714 556 GSAARAANYSADAQKVINDQAQASRDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTMFQAILGAVR 624 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999999999870306168999999999999999999999999999999998519
No 10
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=100.00 E-value=0 Score=398.21 Aligned_cols=469 Identities=15% Similarity=0.152 Sum_probs=345.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE----------CCCCEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 88999999999999986787442025789981267999860----------46606998998720688788877544455
Q gi|254780524|r 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHAHSSAI 74 (480)
Q Consensus 5 ~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (480)
+.|++|.|||+|+|.+|+|+||||||+||+||.|+|++++. +|.||.+..++|..+.|+..+++...+..
T Consensus 2 sllnig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~~~~~~~~~~~~~~~G~Gv~v~~i~R~~d~fl~~~~~~~~s~~ 81 (649)
T PRK12715 2 SILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSSIYRNVDQFANAQVRSTLSYR 81 (649)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 76889999999999999887052552689980414666422467666787310688975799846389999999997778
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67887878998886512677777640113667776687641386753001122101222222100022456566543200
Q gi|254780524|r 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 (480)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (480)
.............+.++.. ...++...+..||..|+.+..+|++...|..++..+..++..++..+..|..++...+.
T Consensus 82 ~~~~~~~~~~~~le~~~~~--~~~~l~~~l~~ff~a~~~la~~P~~~~~R~~vl~~a~~l~~~~n~~~~~l~~~~~~~~~ 159 (649)
T PRK12715 82 TQYDAFYNQAIQIDKLLSQ--DGSSISVPLQTFFDSIGQLNSTPDNIATRGVVLKQSQLLAQQFNSLQIKLEEYERNSTL 159 (649)
T ss_pred HHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999976178--98627899999999999998588887899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCCCE
Q ss_conf 01112787887543432101122234566765210012100001010020124787337711478706970610344412
Q gi|254780524|r 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRD 234 (480)
Q Consensus 155 ~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~~~ 234 (480)
.+...|.++|.++.+++.+|..|. ....+++|+|+||.+++++++++++++....++.+.|+...|..|++.....
T Consensus 160 ~i~~~v~~iN~l~~~Ia~LN~~I~----~~~~~~dLlDqRD~li~eLS~lv~v~v~~~~~G~v~V~~~~G~~LV~g~~~~ 235 (649)
T PRK12715 160 QVTESVKIINRITKELAEVNGKLL----GNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVAGTQQR 235 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCEEEECCCEE
T ss_conf 999999999999999999999974----5899468899999999999865195999869970899957984355457404
Q ss_pred EEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 57630456667664321673365566567766676531110111023313677878876554310012345577777765
Q gi|254780524|r 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENV 314 (480)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (480)
.- ..................+............+|+++|++.+|+..++..+.+++.++..++..++..|..|.+..+.
T Consensus 236 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~lggll~~r~~~l~~~~~~l~~la~~la~~~N~~h~~G~dl~g~ 314 (649)
T PRK12715 236 DL-VVGTGKDSIFGTRIFLSSGGNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMAIGLAQTFNTQHKLGMDMNSQ 314 (649)
T ss_pred EE-EECCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 78-84058888666248993289860103555467532034420111128889988789998876543565516677776
Q ss_pred CCCCCCCCCCCC-----------CCCCCC------------------------------------CCCCCCC--------
Q ss_conf 432112234566-----------665433------------------------------------2222223--------
Q gi|254780524|r 315 PGLFIADGIKDL-----------DNKLCQ------------------------------------GISETIC-------- 339 (480)
Q Consensus 315 ~~~~~~~~~~~~-----------~~~~~~------------------------------------~~~~~~~-------- 339 (480)
.+..++...... ...... .......
T Consensus 315 ~G~~~F~d~n~~~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~~~d~~l~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~ 394 (649)
T PRK12715 315 IGKDFFTDFNSPGQMLKRSTASADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPPAP 394 (649)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 56542135776420001232356777640588885125544456641688306875179986278743554125777777
Q ss_pred ---------------CCCC-CCCCCCCCCCCCCC--------------------C-CCC-------------CCCCCCC-
Q ss_conf ---------------3333-46662100024566--------------------6-655-------------5566654-
Q gi|254780524|r 340 ---------------VNPQ-YRSNPSFLRDGGSV--------------------S-KKF-------------LWNVKNL- 368 (480)
Q Consensus 340 ---------------~~~~-~~~~~~~~~~~~~~--------------------~-~~~-------------~~~~~~~- 368 (480)
.... ...+...+...... . ... ..+....
T Consensus 395 ~~g~~~~~g~t~~~~~~~~~~~~d~~~~~pt~~~a~~~~~~~~d~~~~a~as~~~~~~~~~n~g~g~~~~~~~~~~~~~~ 474 (649)
T PRK12715 395 PAGQVVIDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASLNNTGQGQIILGPVLNTASVN 474 (649)
T ss_pred CCCEEEECCEEEEECCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 76503316647870564223567715761356655442476058777542285211002357776315422422355556
Q ss_pred ----------C-------CCHH----------------------------------------------HHHHHHHHHCCC
Q ss_conf ----------4-------3102----------------------------------------------456766420111
Q gi|254780524|r 369 ----------A-------GYPD----------------------------------------------LINHYCDSFNKN 385 (480)
Q Consensus 369 ----------~-------~~~~----------------------------------------------~~~~~~~~~~~~ 385 (480)
. .... ......++....
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sg~p~~gd~ft~~~~~~~~gDN~nal~la 554 (649)
T PRK12715 475 KQFRIDFISDTQYNLVNVTDSTTAGPFAFVPNTNNVIQIPDGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILG 554 (649)
T ss_pred CCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf 53255312577642353157776665300478775200367778774166437657787355137888878669999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12333345677652899998777887664211123223456799999998876628888999999999999999999999
Q gi|254780524|r 386 FIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLI 465 (480)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvI 465 (480)
..........+..+|.++|..+++.++..++.+....+..+..+.++...+.+.|+|+|+||++|||++||+|||+||+|
T Consensus 555 ~Lq~~~~~~~g~~T~~d~Y~~lvs~vG~~t~~A~~~~~~~~~l~~q~~~~r~SvSGVNLDEE~aNLi~fQqaY~AsArvI 634 (649)
T PRK12715 555 NIQQNKIFSNGSETLFDRYGSLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLM 634 (649)
T ss_pred HHCCCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 63246010589656999999999999999999999899999999999999860315168899999999999999999999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999987409
Q gi|254780524|r 466 MFTDKMLQTLLEGVK 480 (480)
Q Consensus 466 tT~Demlq~Lin~~R 480 (480)
+|+|||||+|||++|
T Consensus 635 sta~emfDtLLn~vR 649 (649)
T PRK12715 635 EISNQIMNLLFDIMR 649 (649)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998539
No 11
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=395.03 Aligned_cols=472 Identities=17% Similarity=0.185 Sum_probs=344.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC----------CCCEEEEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 5889999999999999867874420257899812679998604----------660699899872068878887754445
Q gi|254780524|r 4 LAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFDKVLHAHSSA 73 (480)
Q Consensus 4 ~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 73 (480)
.+.|++|.|||+++|.+|+|+||||||+||+||.|+|+.+++. |.||.+..++|..|.|+..+++.....
T Consensus 2 ssll~ig~sgL~a~Q~~l~vtg~NIaN~nT~GYsRq~v~~~~~~~~~~~~g~~G~Gv~v~~I~R~~D~fl~~~~r~~~s~ 81 (649)
T PRK06945 2 SSLFNIGVSGLNAAQWGLTTTGHNISNAATPGYSRQRPVQAEASGQYTGSGYLGQGVNTVTVKRQYNQYLSAQLNNAQSQ 81 (649)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 50789999999999999998857565178988040166630457745578754577798369980428999999999888
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 56788787899888651267777764011366777668764138675300112210122222210002245656654320
Q gi|254780524|r 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153 (480)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
.++...........+.+|..+ ..++...+..|+..|+.+..+|++...|..++..+..++..++..+..|+.++...+
T Consensus 82 ~~~~~~~~~~l~~ie~~f~e~--~~gl~~~l~~ff~a~~~la~~P~~~a~R~~~~~~a~~L~~~~~~~~~~l~~~~~~~~ 159 (649)
T PRK06945 82 GSSLSTYYSLVAQLNNYLADP--TAGLSPAITSFFTGLQNVANNPSDPSARQTALSNAQALASQFNAAGQQYDQLRQGVN 159 (649)
T ss_pred HHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 779999999999999984898--865789999999999999868787899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCC
Q ss_conf 001112787887543432101122234566-7652100121000010100201247873377114787069706103444
Q gi|254780524|r 154 KEIELEISNLRRFLSELTVVNDAIKFKTAS-KHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 (480)
Q Consensus 154 ~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~-~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~ 232 (480)
..+...|.++|.++.+++.||..|...+.. +..+++|+|+||.+++++++++++++.. .++.+.+....|.+|++...
T Consensus 160 ~~i~~~V~~iN~l~~~Ia~LN~qI~~~~~~~g~~~NdL~DqRD~ll~eLS~~i~i~v~~-~~g~~~v~~~~G~~LV~g~~ 238 (649)
T PRK06945 160 TQLTSTVTQINSYTKQIAQLNQQIAKAESSQGQPPNDLLDQRDLAVSNLSKLVGVQVVQ-QDGGYNVFLGNGQPLVVGNK 238 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEE-CCCCEEEEECCCEEEEECCC
T ss_conf 99999999999999999999999999755689992689999999999998661959997-49968999659737884584
Q ss_pred CE-EEEEECCCCCCCCCC----CEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 12-576304566676643----2167336556656776667653111011102331367787887655431001234557
Q gi|254780524|r 233 RD-INFEKMNSYTVTSES----NPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPI 307 (480)
Q Consensus 233 ~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (480)
.. +.............. ...................+|+++|+..+|+..++..+.+++.++..++..++..|..
T Consensus 239 ~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~l~gl~~~rd~~l~~~~~~ld~la~~l~~~~N~~~~~ 318 (649)
T PRK06945 239 SYQLATVASPSDPSRLTVVYKGIAGTVPPGPTQILPDSSLTGGTLGGLLAFRSQTLDPAQNQLGRLALSFAAQVNAQNAL 318 (649)
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 04677503788887226752144332468751003545557752134677654013677888889999999987777632
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-----C-------------C-----------------------------------CCCC
Q ss_conf 777776543211223456666-----5-------------4-----------------------------------3322
Q gi|254780524|r 308 AGNSENVPGLFIADGIKDLDN-----K-------------L-----------------------------------CQGI 334 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~-----~-------------~-----------------------------------~~~~ 334 (480)
|.+..+..+...+........ . . ....
T Consensus 319 G~d~~g~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 398 (649)
T PRK06945 319 GIDLNGNLGGDLFSVGGPTVYANTNNTGSATLSASIVNASQLTTSDYTLSYDGTNYTLTRRSDGSVVGTATSLPTTIDGL 398 (649)
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCEEECCCCCCCCCCCE
T ss_conf 76778876754203577622114577664048888503554555650688526622787547884110357776544655
Q ss_pred CCCCCCCCCCC-------------------CCCCCCCCCCC-----------------C--CCCCC--------------
Q ss_conf 22223333346-------------------66210002456-----------------6--66555--------------
Q gi|254780524|r 335 SETICVNPQYR-------------------SNPSFLRDGGS-----------------V--SKKFL-------------- 362 (480)
Q Consensus 335 ~~~~~~~~~~~-------------------~~~~~~~~~~~-----------------~--~~~~~-------------- 362 (480)
........... .++..+..... . .....
T Consensus 399 ~~~~~~~~~~~d~~~i~pt~~~~~~~~~~~~d~~~iaa~~~~~~~~~~~n~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (649)
T PRK06945 399 SLSLSGTMNAGDSFTVRPTRGAANGFSLATSDGSAIAAASPVRASAAATNTGTGTISQGSVSAGYQLPPGTTTLTYDAAS 478 (649)
T ss_pred EEEECCCCCCCCEEEECCCCCHHCCCEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCC
T ss_conf 88513665567615741530000232144157466430374224556466674036402345554466765430001445
Q ss_pred -------------CCCCCCC-----------CC------------------------------HHHHHHHHHHHCCCCCC
Q ss_conf -------------5666544-----------31------------------------------02456766420111123
Q gi|254780524|r 363 -------------WNVKNLA-----------GY------------------------------PDLINHYCDSFNKNFIF 388 (480)
Q Consensus 363 -------------~~~~~~~-----------~~------------------------------~~~~~~~~~~~~~~~~~ 388 (480)
....... .. ........++.......
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~d~~~~~~~~~~~gDn~~a~~l~~l~ 558 (649)
T PRK06945 479 KTLSGFPVGTTVTVAGTPPTSYTITSATTPVPYTPGAGISFNGVSVSLSGTPADGDTFTIGANTGGTNDGRNALALSKLQ 558 (649)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHC
T ss_conf 55556644432113677654322345676544567752000553676326757787055226777878649999999631
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33345677652899998777887664211123223456799999998876628888999999999999999999999999
Q gi|254780524|r 389 DPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFT 468 (480)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~ 468 (480)
.......+..+|.++|..+++.+++.++.+....+..+..+..+...+.+.|+|+|+|||+|||++||+|+|+||+|+|+
T Consensus 559 ~~~~~~~~~~t~~~~y~~~vs~iG~~a~~a~~~~~~q~~l~~~~~~~r~SvSGVnlDEEl~nLikyQqaY~AaArvItt~ 638 (649)
T PRK06945 559 NAKTLGNGTASLTGAYAQLVNDIGNKASQLKVSSAAQTALLTQITTAQQSVSGVNLDEEAANLLQYQQLYQANAKVIQTA 638 (649)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04213789620999999999999999999999999999999999999974406139999999999999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999874
Q gi|254780524|r 469 DKMLQTLLEG 478 (480)
Q Consensus 469 Demlq~Lin~ 478 (480)
||||++||+|
T Consensus 639 deMldtLl~i 648 (649)
T PRK06945 639 STLFDTLLGI 648 (649)
T ss_pred HHHHHHHHHH
T ss_conf 9999999953
No 12
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=394.13 Aligned_cols=471 Identities=14% Similarity=0.166 Sum_probs=339.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE----------CCCCEEEEEEEEEHHHHHHHHHHHH
Q ss_conf 913588999999999999986787442025789981267999860----------4660699899872068878887754
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI----------SPENVTVVTQRSENKNMFDKVLHAH 70 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~----------~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (480)
|+ ++.|++|.|||+|+|.+|+|+||||||+||+||.|+|+.++. +|.||.+..++|..|.|+..+++..
T Consensus 1 m~-s~ll~ig~sgL~a~Q~al~vtg~NIANanT~GYsRq~v~~~~~~~~~~~~~~~G~GV~v~~I~R~~D~fl~~q~~~~ 79 (626)
T PRK08871 1 MA-SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRQFGGSTYGMGVHVENVRRSWDQFAVNELNLS 79 (626)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHH
T ss_conf 95-67899999999999999998747665169988051056540457623478720367898379981527999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 44556788787899888651267777764011366777668764138675300112210122222210002245656654
Q gi|254780524|r 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 (480)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (480)
....++...........+.++... ...++...+..||..|+.+..+|++...|..++..+..++..++..+..|+.++.
T Consensus 80 ~s~~~~~~~~~~~l~~le~~~~~~-~~~gl~~~l~~ff~a~~~la~~P~~~~~R~~~l~~a~~L~~~~n~~~~~l~~~~~ 158 (626)
T PRK08871 80 TTNLANKTDTEANLDMLSSMLSSV-ASKKIPENLNEWFDAVKTLADSPNDLGARKVVLEKAKLISQTLNDFHETVRQQKD 158 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888889999999999999983887-7652789999999999998539875778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCC-EEEEECCCCEEEEC
Q ss_conf 32000111278788754343210112223456676521001210000101002012478733771-14787069706103
Q gi|254780524|r 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNN-DMVVYTSDGTTLFE 229 (480)
Q Consensus 151 ~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~-~~~v~~~~g~~l~~ 229 (480)
..+..+...|.++|.++.+++.+|..|.... ...++|+|+||.+++++|+++++++....++ .+.+....|.+|++
T Consensus 159 ~~~~~i~~~V~~iN~l~~~Ia~lN~~I~~~~---~~~ndL~DqRD~ll~eLS~~~~v~v~~~~~g~~~~v~~~~G~~Lv~ 235 (626)
T PRK08871 159 VTNKKLDMGIERINQIALEIRDIHRLMMRTP---GPHNDLMDQHEKLIKELSQYTKVTVTPRKNAEGFNVHIGNGHTLVS 235 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 9999999999999999999999999998548---9985268899999999975149699991699658999579716542
Q ss_pred CCCC-EEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4441-257630456667664321673365566567766676531110111023313677878876554310012345577
Q gi|254780524|r 230 TVPR-DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIA 308 (480)
Q Consensus 230 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (480)
.... .+.+..... .... .......+... ........+|+++++..+|+..++.++.+++.++..+.+.++..|..|
T Consensus 236 g~~~~~l~~~~~~~-~~~~-~~~~~~~g~~~-~~~~~~~~gG~l~gll~~rd~~l~~~~~~l~~la~~~~~~~N~~~~~G 312 (626)
T PRK08871 236 GTEASQLKMIDGYP-DPHQ-RRLAMVEGKGL-KAIKADDIGGKLGALLDMRDEHIPQVMDELGRLATGFSSEVNRLQSQG 312 (626)
T ss_pred CCCEEEEEEECCCC-CCCC-EEEEEECCCCC-EECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 67403688634888-8762-17999538861-204446778635688871454227899998789999999889998616
Q ss_pred CCCCCCCCCCCCCCCCCCC-----------CCCC----------------------------------CCCC-----C--
Q ss_conf 7777654321122345666-----------6543----------------------------------3222-----2--
Q gi|254780524|r 309 GNSENVPGLFIADGIKDLD-----------NKLC----------------------------------QGIS-----E-- 336 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~-----------~~~~----------------------------------~~~~-----~-- 336 (480)
.+..+..+..++....... .... .... .
T Consensus 313 ~d~~g~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~g~~~~~~~g~~~~v~~~~g~~~~~~~~~~~~~~ 392 (626)
T PRK08871 313 LDLRGNVGGNLFTDVNSEVIAKSRAVTAPGSKADVAVFIDDISQLKGGEYALRYDGSQYTVTKPSGETVSLDPDGNPSAF 392 (626)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEECCCCCEEEEECCCCCCCE
T ss_conf 57678646432245664211233101268874322577324443567641899617623897279955763036787632
Q ss_pred CCC-------CCCCCC-------------------CCCCCCCCCCCCCCCCCCCCC--------C------C----CC--
Q ss_conf 223-------333346-------------------662100024566665555666--------5------4----43--
Q gi|254780524|r 337 TIC-------VNPQYR-------------------SNPSFLRDGGSVSKKFLWNVK--------N------L----AG-- 370 (480)
Q Consensus 337 ~~~-------~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~--------~------~----~~-- 370 (480)
... .....+ .++..+.............+. . . .+
T Consensus 393 ~~~g~~~~~~~~~~~g~~~~~~pt~~~~~~~~~~~~d~~~i~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (626)
T PRK08871 393 YLDGMRVEVRNPPSAGERILLRPTRNGAAQIKLETNDAKKIAAQSYEASTTFAQGNAKFKILQAGDLREFEVIVSPTGDQ 472 (626)
T ss_pred EECCEEEEECCCCCCCCEEEEECCCCCCHHHHEECCCHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCE
T ss_conf 31343786036767786378713666301110114686664201643333334676422320467754422454378750
Q ss_pred ----CHHH--H---------------------------------------HHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf ----1024--5---------------------------------------676642011112333345677652899998
Q gi|254780524|r 371 ----YPDL--I---------------------------------------NHYCDSFNKNFIFDPVAGINTNVTLLEYAR 405 (480)
Q Consensus 371 ----~~~~--~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (480)
.... . ....+...............+..++.++|.
T Consensus 473 ~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~gDn~na~~l~~l~~~~~~~~~~~T~~d~y~ 552 (626)
T PRK08871 473 FAVTDMKGNILLDPQPYPPKGPVTVGGTTFELTEGALANDKFTANLVPSEGDNGNLRKMQQLQTRKVMDDGRSTIIDLYH 552 (626)
T ss_pred EEEECCCCCEECCCCCCCCCCCEEECCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCEEHHHHHH
T ss_conf 47632677521267656888850213416873366556761221146577872999998850100001788606999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77788766421112322345679999999887662888899999999999999999999999999999998740
Q gi|254780524|r 406 NSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 406 ~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
.+++.++.++..+....+..+.....+...+.+.|+|+|+|||+|||++||+|||+||+|+|+|||||+|||||
T Consensus 553 ~lvs~iG~~~~~a~~~~~~~~~~~~~~~~~~~svSGVnlDEEl~nLikyQqaY~AaArvItt~demldtLlnik 626 (626)
T PRK08871 553 NLNTEVGLKKATATRLAEVARLEKEAAQSRVASISGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILQLR 626 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999986011503999999999999999999999999999999987759
No 13
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=388.64 Aligned_cols=469 Identities=17% Similarity=0.211 Sum_probs=345.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC----------CCCEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999867874420257899812679998604----------6606998998720688788877544455
Q gi|254780524|r 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS----------PENVTVVTQRSENKNMFDKVLHAHSSAI 74 (480)
Q Consensus 5 ~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (480)
+.|++|.|||+|+|.+|+|+||||||+||+||.|+|+.+++. +.||.+..++|..+.|+..+++......
T Consensus 2 sll~ig~sgL~a~q~al~vt~~NIaN~nT~GYsRq~v~~~~~~~~~~~~~~~G~Gv~v~~i~R~~d~fl~~~~~~~~s~~ 81 (676)
T PRK05683 2 SLISIGLSGLGASQTALATTGNNIANVDTAGYSRQQAVQTTKASQFSGAGYIGTGTTLADVRRIYNSFLDAQLRTATSLN 81 (676)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEECCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 67899999999999999987366641799881401666313467556785031588973598816089999999998777
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67887878998886512677777640113667776687641386753001122101222222100022456566543200
Q gi|254780524|r 75 GQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADK 154 (480)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (480)
++...........+.++.. ...++...+..||..|+.+..+|.+...|..++..+..++..++..+..|+.++...+.
T Consensus 82 ~~~~~~~~~l~~~e~~~~~--~~~gl~~~l~~ff~a~~~ls~~P~~~~~r~~~~~~a~~l~~~~~~~~~~l~~~~~~~~~ 159 (676)
T PRK05683 82 SDASAYLGQITQLDSLLSD--STTGISPALQRFFTALQTAAANPTDDASRQLLLTQAQGLSKRFNSLSSQLNQQNSNINS 159 (676)
T ss_pred HHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999987478--88647999999999999998688988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCCC-
Q ss_conf 0111278788754343210112223456676521001210000101002012478733771147870697061034441-
Q gi|254780524|r 155 EIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPR- 233 (480)
Q Consensus 155 ~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~~- 233 (480)
.+...|.++|.++.+++.+|..|......+..+++|+|+||.+++++++++++.+... ++.+.++...|..|++....
T Consensus 160 ~i~~~v~~iN~l~~~Ia~LN~~I~~~~~~g~~~ndL~DqRD~ll~eLS~~v~i~v~~~-dg~~~v~~~~G~~LV~g~~~~ 238 (676)
T PRK05683 160 QLSAMTSQVNNLTTSIAEYNDQIAKASAAGATPNDLLDARDEAVRQLSELVGVTVVER-DGNYDLYIGSGQPLVVGNTAN 238 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEC-CCCEEEEECCCCEEEECCCEE
T ss_conf 9999999999999999999999998535799961578999999999986529599974-896899966982578467137
Q ss_pred EEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 25763045666766432167336556656776667653111011102331367787887655431001234557777776
Q gi|254780524|r 234 DINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313 (480)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (480)
.+....... .... ....+..............+|+++++..+|+..++..+.+++.++..+++.++..+..|.+..+
T Consensus 239 ~l~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~gG~lggll~~r~~~l~~~~~~l~~la~~~~~~~N~~~~~G~d~~g 315 (676)
T PRK05683 239 TLSVVPGPD--DPTR-YNVQLNRGSSTQDVTSLVTGGEIGGLLRYRSEVLDPAMNELGRLALVVADQINSQLGQGIDLNG 315 (676)
T ss_pred EEEEEECCC--CCCE-EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 899874688--9860-5899726875333555557761103456543012677878878999999998888743757788
Q ss_pred CCCCCCCCCCCCC-------------------------C--------------C----------------------CCCC
Q ss_conf 5432112234566-------------------------6--------------6----------------------5433
Q gi|254780524|r 314 VPGLFIADGIKDL-------------------------D--------------N----------------------KLCQ 332 (480)
Q Consensus 314 ~~~~~~~~~~~~~-------------------------~--------------~----------------------~~~~ 332 (480)
..+..++...... . . ....
T Consensus 316 ~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~v~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~ 395 (676)
T PRK05683 316 NFGANLFGDINSADAISQRSLAKNGNSAGSGNLDVTITDTSKLTTSDYEVTFTSATNYTVRRLSDGTDMGSYDLSDNPAP 395 (676)
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 64543223566400002331014667777531689970277645442279960677406886578860454334578764
Q ss_pred CCC-C--CCCCCCCCCCCCCCC--------------CCC-------------CCCCC-C-C-------------------
Q ss_conf 222-2--223333346662100--------------024-------------56666-5-5-------------------
Q gi|254780524|r 333 GIS-E--TICVNPQYRSNPSFL--------------RDG-------------GSVSK-K-F------------------- 361 (480)
Q Consensus 333 ~~~-~--~~~~~~~~~~~~~~~--------------~~~-------------~~~~~-~-~------------------- 361 (480)
... . .+.......++...+ ... ..... . .
T Consensus 396 ~~~g~~~~i~~~~~~~gd~~~~~p~~~~~~~i~~~l~~~~~~a~a~~~~~~~~~~n~g~~~~~~~~~~~~~~~~~~~~~~ 475 (676)
T PRK05683 396 VIDGFSLSLNGGTLAAGDSFKVTPTRNAASDIETTLTDAKRLAFAAPLTATAGSGNSGTGTITQPTLTSKLDIYDPAQTA 475 (676)
T ss_pred CCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCEEECCHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 33535898537763457616873222443452013048777432155422235577675313013212344566743210
Q ss_pred -----CCC------------------------------CCCCCCCH----------------------------------
Q ss_conf -----556------------------------------66544310----------------------------------
Q gi|254780524|r 362 -----LWN------------------------------VKNLAGYP---------------------------------- 372 (480)
Q Consensus 362 -----~~~------------------------------~~~~~~~~---------------------------------- 372 (480)
... .....+..
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (676)
T PRK05683 476 DLQNAIKNSTPVKLVFGATSGGPQGYTLVDAKGNAIGSGTIVPGQSNTLKLAVPMVDASGNPGVGKTFTVEMTISGSPQA 555 (676)
T ss_pred HHCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 00022356776214632677876531565267750356420357665301101344566777655442156653377467
Q ss_pred ----------HHHHHHHHHHCCCCCCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------24567664201111233----3345677652899998777887664211123223456799999998876
Q gi|254780524|r 373 ----------DLINHYCDSFNKNFIFD----PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSN 438 (480)
Q Consensus 373 ----------~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE 438 (480)
.......++........ .........+|.++|..+++.++++++.+....+..+..+.++...+.+
T Consensus 556 ~d~~~~~~~~~g~~Dn~nal~la~l~~~~~~~~~~~~~~~Tl~d~y~~lvs~vG~~a~~A~~~~~~q~~l~~~~~~~r~S 635 (676)
T PRK05683 556 GDSFTVSFNGAGSSDNRNALALVGLQTKSTVGVGSGGTGISLTDAYGKLVERVGTLASQARADADATAAVLKQAQDSRDS 635 (676)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87134404677778769999999644235423667878744999999999999999999999999999999999999985
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 62888899999999999999999999999999999998740
Q gi|254780524|r 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 439 ~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
.|+|+|+|||+|||++||+|+|+||+|+|+|||||+|||.+
T Consensus 636 vSGVnlDEE~anLikfQqaY~AaArvItt~deMlDtLln~~ 676 (676)
T PRK05683 636 LSGVSLDEEAANLIKFQQYYTASSQIIKAAQETFDTLINAL 676 (676)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 62503999999999999999999999999999999997349
No 14
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=376.62 Aligned_cols=417 Identities=15% Similarity=0.193 Sum_probs=324.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC------------CCCEEEEEEEEEHHHHHHHHHHHH
Q ss_conf 35889999999999999867874420257899812679998604------------660699899872068878887754
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------------PENVTVVTQRSENKNMFDKVLHAH 70 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 70 (480)
+|++|++|+|||.|+|.+|+|+||||||+||+||.|++++++.+ |.||.+..++|..+.|+..+++..
T Consensus 2 ~~S~~n~a~SGl~A~q~al~vts~NIANanT~GYsRq~v~~~~~~~~~~~~~~~~~G~GV~v~~v~R~~d~~l~~~~~~~ 81 (431)
T PRK06799 2 RLSDYNTPLSGMLAAQMGLQTTQQNLSNIHTPGYVRQMVNYGSVGASGGLLPEQRIGYGVQTLGVDRITDEVKTKQYNDQ 81 (431)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH
T ss_conf 64245699999999999999887857407998906147220134678777777755578898068871508999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 44556788787899888651267777764011366777668764138675300112210122222210002245656654
Q gi|254780524|r 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 (480)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (480)
....++...........+..++.+. ..++...+..|+..|..+..+|++...+..++..+..++..++..+..+..++.
T Consensus 82 ~s~~~~~~~~~~~l~~~e~~~~~~~-~~~ls~~l~~ff~a~~~la~~P~~~~~r~~v~~~a~~la~~~n~~~~~l~~~~~ 160 (431)
T PRK06799 82 LSQLSYYNYMNSALSRVESMVGTTG-KNSLSSLMDGFFNAFREVAKNPEQANYYDTLISETGKFTSQLNRLAKGLDELEA 160 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998899999999999999848988-885789999999999999859687789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCE-EEEECCCCEEEEC
Q ss_conf 320001112787887543432101122234566765210012100001010020124787337711-4787069706103
Q gi|254780524|r 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND-MVVYTSDGTTLFE 229 (480)
Q Consensus 151 ~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~-~~v~~~~g~~l~~ 229 (480)
.....+...|.++|.++.++..+|..|.. ..+..+++++|+||.++++++.++++.+....++. +.....+|..+++
T Consensus 161 ~~~~~i~~~V~~iN~ll~~ia~lN~~I~~--~~~~~~ndLlDqRD~ll~~LS~~v~i~v~~~~~~~~~~~v~~gG~~lv~ 238 (431)
T PRK06799 161 QTTEDIEAHVNEFNRLAKSLAEANKKIGQ--AGTQVPNQLLDERDRILTEMSKYANIEVSYESMNPNIASVRMNGVLTVN 238 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCEEEEE
T ss_conf 99999999999999999999999999975--3599931778869999999973008388863489854898439748984
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 44412576304566676643216733655665677666765311101110233136778788765543100123455777
Q gi|254780524|r 230 TVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAG 309 (480)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (480)
..... ....... .........+ ......+|.+++....++. ++.++..++.++..+++.++..+..+.
T Consensus 239 g~~~~-~l~~~~~----~~~~~~~~~g------~~~~~~~G~l~g~~~~~~~-l~~~~~~Ld~~A~~la~~~N~~~g~~~ 306 (431)
T PRK06799 239 GQDTY-PLQLNKE----KEPMSVEIYG------SEIPLPSGAIISAIDTKAK-IASYKKNLEELMSSVKNQVNTVMGKSF 306 (431)
T ss_pred CCCEE-EEEECCC----CCCCEEEECC------CCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 78204-6552147----8873266537------1347788613566644855-999999999999999999861136787
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 77765432112234566665433222222333334666210002456666555566654431024567664201111233
Q gi|254780524|r 310 NSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
..... ...+........+...+... . .. .. .....
T Consensus 307 f~~~~--------------------ag~~~~n~~~~~d~~~~~~~---------------~--~~----a~----~~a~~ 341 (431)
T PRK06799 307 FVGDS--------------------AKKWKLNPEFAKDVSKMKIS---------------A--ET----AN----KLAAI 341 (431)
T ss_pred CCCCC--------------------CCCEEECHHHCCCCCCCCCC---------------C--HH----HH----HHHHC
T ss_conf 77788--------------------77655565323672003544---------------3--11----56----66524
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33456776528999987778876642111232234567999999988766288889999999999999999999999999
Q gi|254780524|r 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 (480)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~D 469 (480)
.........++..++..+++.++...+.+....+.....+.++...+.+.|+|||+||+++||++||+||||||||+|+|
T Consensus 342 ~~~~~~~g~t~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~~~~~r~svsGVnlDEE~~nLl~~QqaY~A~AkvIst~d 421 (431)
T PRK06799 342 TDDKYKEGLSYKQALDQFIVGVASDKSAVNAYQKIHTDLLEGIQQEKMSLEGVNMEEEMVNLMAFQKYFVANSKAITTMN 421 (431)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47887787658999999999999999999999999999999999999825383888999999999999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998740
Q gi|254780524|r 470 KMLQTLLEGV 479 (480)
Q Consensus 470 emlq~Lin~~ 479 (480)
||||+||||+
T Consensus 422 emldtLLniv 431 (431)
T PRK06799 422 EVFDSLFSII 431 (431)
T ss_pred HHHHHHHHHC
T ss_conf 9999998439
No 15
>PRK08425 flgE flagellar hook protein FlgE; Validated
Probab=100.00 E-value=0 Score=393.38 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=107.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55556665443102456766420111123333456776528999987778876642111232234567999999988766
Q gi|254780524|r 360 KFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNT 439 (480)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~ 439 (480)
........+..++.....+.+++.......+++.+.+.+.|.....++ |.++..||.+.++.|+++++|+|.+++||+
T Consensus 598 ~G~L~~vsI~~dG~I~g~ysNG~~~~l~qIaLA~F~N~~GL~~~G~Nl--f~~T~~SG~~~~g~~g~~g~G~I~~~sLE~ 675 (716)
T PRK08425 598 AGDLMDIRFDSDGVLLGAFSNGRTFALAQVALASFANNEGLQAEGGNV--FSQTANSGEAVIGAAGTGGRGSISASKLEM 675 (716)
T ss_pred EEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHHHHHCCCCE--EECCCCCCCCEECCCCCCCCCEECCCCHHH
T ss_conf 056777898999779999859956377899898856857724206962--875024788666688868742275476233
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 28888999999999999999999999999999999987409
Q gi|254780524|r 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 440 SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
|||||++||++||++||+||||||+|||+||||||||||||
T Consensus 676 SNVDLs~Eft~mI~tQRgyQANsKvITTsDemLqelinLKR 716 (716)
T PRK08425 676 SNVDLSRSLTQLIVVQRGFQANSKTITTSDQMLNTLLQLKQ 716 (716)
T ss_pred HHHHHHHHHHHHHHHHHHCHHHCCEEEEHHHHHHHHHHHCC
T ss_conf 12159999999999766420304378618999999986469
No 16
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=100.00 E-value=0 Score=391.54 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=103.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q ss_conf 6665555666544310245676642011112333345677652899998777887664---------2111232234567
Q gi|254780524|r 357 VSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKN---------RSDSHDLHMKSQV 427 (480)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~---------~sg~~~~~~~~~~ 427 (480)
+..........+..++.....+.+++.......+++.+.+...|.....++ |.++. .||.+..+.++.+
T Consensus 473 G~~~G~L~~~~Id~dG~I~g~ysNG~~~~l~qIalA~F~N~~GL~~~G~n~--y~~T~~s~~~~~~~~SG~~~~g~~g~G 550 (605)
T PRK05841 473 GKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNL--YEMQEGTINGENRPLSGNPILGWDEEG 550 (605)
T ss_pred CCCEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHHHHHCCCCE--EEECCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 800367777898999489999869968788999898536857723226955--652125545666567787343357778
Q ss_pred HH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99--999998876628888999999999999999999999999999999987409
Q gi|254780524|r 428 VF--NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 428 ~~--g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.+ |+|.+++||+|||||++||++||++||+||||||||||+||||||||||||
T Consensus 551 ~~~~GsI~~~aLE~SNVDLa~Eft~mIvtQR~yQANsKvITTsD~mLqelinLKR 605 (605)
T PRK05841 551 KLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 (605)
T ss_pred CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHCEEEEEHHHHHHHHHHHCC
T ss_conf 8764316247620133058999999999876520541278768999999986259
No 17
>PRK06803 flgE flagellar hook protein FlgE; Validated
Probab=100.00 E-value=0 Score=371.75 Aligned_cols=392 Identities=16% Similarity=0.111 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEEEEEE--EEEHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999867874420257899812679998604660699899--87206887-8887754445567887878
Q gi|254780524|r 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQ--RSENKNMF-DKVLHAHSSAIGQQRLLQS 82 (480)
Q Consensus 6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~~~g~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (480)
|||+|+|||+|||++|||||||||||||+|||++|++|+++..+..++++ ..+...+. ++.+..+...+++++.+.+
T Consensus 2 S~~~gvSGl~a~~~~ldvIsNNIANvnT~GfK~s~~~F~dl~~~~~~gGv~~~~~~~~~~~~G~l~~T~~~~DlAI~G~G 81 (398)
T PRK06803 2 SFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFASIYNGGQAGGVEVSSVSQNFSKGGSLTYTGRGLDLAISGGG 81 (398)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHCCCHHCCCCCCCHHHHHCCCCCCCEEEEEEEEEEECCCCEEECCCCEEEEECCCC
T ss_conf 68999999999885643663577757853107562054675476677854876777776068875666980269981686
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99888651267777764011366777668764138675300112210122222210002245656654320001112787
Q gi|254780524|r 83 FEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIELEISN 162 (480)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (480)
||.+.+. .+..+|+|.+.|..+..+++.++.+.++++|..+....+... .+.++........+.....
T Consensus 82 FF~V~~~------~g~~~YTRaG~F~~D~~G~Lv~~~G~~l~G~~~d~~g~~~~~------~~~~i~i~~~~~~~~aTt~ 149 (398)
T PRK06803 82 FFVLKGS------DGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNIQTG------NVSDLQVQTASLPAKATDQ 149 (398)
T ss_pred EEEEECC------CCCEEEECCCEEEEEECCEEEECCCCEEECEEECCCCCCCCC------CCCCEEECCCCCCCCCCCE
T ss_conf 7999769------985667527418993378799089986745360688851026------6320340157668643220
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCCCEEEEEECCC
Q ss_conf 88754343210112223456676521001210000101002012478733771147870697061034441257630456
Q gi|254780524|r 163 LRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVPRDINFEKMNS 242 (480)
Q Consensus 163 ~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~ 242 (480)
+ .....++..+... .....+..+.. .+.....+.+++..|. .+.......
T Consensus 150 ~----~~~~nl~a~~~~~------~~~~~~~~~~~------------~~~~~~~~~vyDs~G~--------~~~v~~~f~ 199 (398)
T PRK06803 150 L----DFVANLDASVTDP------SVSPFDPTDEK------------SYNSSTTSTVYDSLGN--------EHAVTQYFV 199 (398)
T ss_pred E----EEEEECCCCCCCC------CCCCCCCCCCC------------CEEEEEEEEEECCCCC--------CEEEEEEEE
T ss_conf 6----7886247766667------65656888776------------3001112899846897--------257899999
Q ss_pred CCCCCCCCEE-EECCCCCC-CCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6676643216-73365566-567766676531110111023313677878876554310012345577777765432112
Q gi|254780524|r 243 YTVTSESNPI-FIDGVVVS-SNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGNSENVPGLFIA 320 (480)
Q Consensus 243 ~~~~~~~~~~-~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (480)
......|... ..++.... .....+...|.+...... .+ .+.
T Consensus 200 kt~~n~w~~~~~~~~~~~~~~~~l~F~~~G~l~~~~~~-------------~~------~~~------------------ 242 (398)
T PRK06803 200 KTATNEWAVHYTVDGGDVTPPLTLQFDDTGALIPGKGS-------------TI------NLH------------------ 242 (398)
T ss_pred ECCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCC-------------CE------ECC------------------
T ss_conf 65897168999757875577447898788846457764-------------20------014------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 23456666543322222233333466621000245666655556665443102456766420111123333456776528
Q gi|254780524|r 321 DGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTL 400 (480)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 400 (480)
.....................++.......................+..++.....+.++........+++.+.+...|
T Consensus 243 -~~~~~~g~~~~~i~l~~~~~tq~~~~~~~~~~~qdG~~~G~l~~~~I~~dG~I~~~ysNG~~~~lgqIala~F~Np~gL 321 (398)
T PRK06803 243 -DTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSDGYTSGELNGVRIEDNGMVYATYTNGQEQLQGQVVLANFANPNGL 321 (398)
T ss_pred -CCCCCCCCCCEEEEECCCCCEEECCCCCCEECCCCCEEEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHHC
T ss_conf -4457787664358864776357436654100146875543232379888986999954874367768989973383655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999877788766421112322345679999999887662888899999999999999999999999999999998740
Q gi|254780524|r 401 LEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 401 ~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
.....++ |.++..||.+.++.|+++++|+|.+++||+|||||++||++||++||+||||||+|+|+||||||||||+
T Consensus 322 ~~~G~n~--f~~T~~SG~~~~g~~g~~g~G~i~~gaLE~SNVDla~Eft~mI~tQR~yqANskvItT~DemlqelvN~v 398 (398)
T PRK06803 322 VTVSNTA--WSASNKSGQAILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALFNAI 398 (398)
T ss_pred CCCCCCE--EECCCCCCCCEECCCCCCCCCEEEECCEEHHHCHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHC
T ss_conf 0047945--8643467886765799888512832746313140999999999998763564248874899999997409
No 18
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion]
Probab=100.00 E-value=0 Score=365.41 Aligned_cols=405 Identities=16% Similarity=0.117 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECC------------CCEEEEEEEEEHHHHHHHHHHHH
Q ss_conf 358899999999999998678744202578998126799986046------------60699899872068878887754
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP------------ENVTVVTQRSENKNMFDKVLHAH 70 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~~------------~g~~~~~~~~~~~~~~~~~~~~~ 70 (480)
|+.+|++|+|||+|||.+||||||||||+||+||||+|++|+++. .|+.+..++ ..+.++....+
T Consensus 1 m~~s~~~gvSGm~a~q~~LdvisnNIANanT~GfK~s~~~F~dm~s~s~~g~~~~~~~Gv~~s~i~---~i~~qG~~~~T 77 (423)
T COG1749 1 MLRSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRAEFSDMFSQSLVGASTYTALGVGVSSIS---QIFTQGSFQST 77 (423)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEE---EECCCCCEEEC
T ss_conf 916776666667776640332023413454521132675066320100045544676671466458---85158854764
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 44556788787899888651267777764011366777668764138675300112210122222210002245656654
Q gi|254780524|r 71 SSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRA 150 (480)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (480)
...+|.++.+.+||.+.+. .....+++|.+.|..+..+++.++.+.++.++.............. +.++..
T Consensus 78 ~~~~DlAI~G~GFF~v~~~-----~~~~~~yTRaG~F~~D~~g~LVn~~G~~l~G~~~~~~~~~~~~~~~----~~~i~i 148 (423)
T COG1749 78 GSNLDLAISGNGFFIVQDD-----SGGTNFYTRAGSFRLDKNGYLVNPAGLYLQGYPANGVTGGINGGTT----LLNIQI 148 (423)
T ss_pred CCCCCEEEECCEEEEEEEC-----CCCCEEEEECCCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCC----CCCEEC
T ss_conf 7863579916717999716-----8984588866750176788677688737973124688875114555----332133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECC
Q ss_conf 32000111278788754343210112223456676521001210000101002012478733771147870697061034
Q gi|254780524|r 151 DADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFET 230 (480)
Q Consensus 151 ~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~ 230 (480)
......+..... .......|+.... ......+. +..+. ..+......++++..|
T Consensus 149 ~~~~~~~a~~tt---~~~~~~NL~~~~~--~~~~~~~~---n~~~~------------~~~~~~~s~~~yDs~G------ 202 (423)
T COG1749 149 PNNNGLPAKATT---NVSFSANLNSGAI--VPSITAPF---NPTDT------------ATYNYKTSLTVYDSLG------ 202 (423)
T ss_pred CCCCCCCCCCCE---EEEEEECCCCCCC--CCCCCCCC---CCCCC------------CCCCCCEEEEEECCCC------
T ss_conf 456676764320---6522101487775--65346787---87653------------2114531599992689------
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC----HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 441257630456667664321673365566567766676531110----1110233136778788765543100123455
Q gi|254780524|r 231 VPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKAL----LQIRDSVVPIFQNQLDEMARVLIGSFSEKDP 306 (480)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (480)
...........+....|........... .+++..... +.+... ..+.... +
T Consensus 203 --~~~~~~~~f~k~~~~tw~v~~~~~~~~~------~p~g~a~~~~~~~l~Fd~~-------------G~L~s~~----~ 257 (423)
T COG1749 203 --NKHTLDVYFVKTGTNTWQVYVLVKSQTG------DPDGTADTGTTFTLEFDPA-------------GALTSGE----P 257 (423)
T ss_pred --CEEEEEEEEEECCCCCEEEEEEECCCCC------CCCCCCCCCCEEEEEECCC-------------CCCCCCC----C
T ss_conf --5123567999447871269999435666------8887666664257887798-------------8601278----8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 77777765432112234566665-43322222233333466621000-24566665555666544310245676642011
Q gi|254780524|r 307 IAGNSENVPGLFIADGIKDLDNK-LCQGISETICVNPQYRSNPSFLR-DGGSVSKKFLWNVKNLAGYPDLINHYCDSFNK 384 (480)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (480)
....... ........ .............+......... ....+..........+..++.....+.++...
T Consensus 258 ~~~~~~~--------~~~~~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~qdGy~~G~l~~~~I~~dG~I~~~ysNG~~~ 329 (423)
T COG1749 258 GPTEIVG--------PNVAVNGATLAQGISLDLTGSTQQSTGFSLTVASTQDGYAPGNLKDYRIDEDGVIVGVYSNGVTQ 329 (423)
T ss_pred CCCCCCC--------CCCCCCCCCCCCEEEECCCCCEEEECCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEEECCCEE
T ss_conf 8643446--------66565763002204532577548851300134563367553057789977997899997188264
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11233334567765289999877788766421112322345679999999887662888899999999999999999999
Q gi|254780524|r 385 NFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKL 464 (480)
Q Consensus 385 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakv 464 (480)
......++.+..+..|.....+. |.++..||.+.+++++.+++|+|++++||+|||||++||+|||++||+||||||+
T Consensus 330 ~~gqIaLa~F~N~~GL~~~ggN~--~~~t~~SG~~~~g~~g~g~~G~i~~gaLE~SNVDls~EltnmIvaQR~YqANsK~ 407 (423)
T COG1749 330 PLGQIALANFANPQGLVKEGGNV--YAATNNSGAASLGAAGVGGFGKISSGALEMSNVDLAKELTNLIVAQRGYQANAKV 407 (423)
T ss_pred EEEEEEEEECCCCCCCCCCCCCE--EEECCCCCCEEECCCCCCCCEEECCCCCEECCCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 66678877304801062158957--8511567861444688787302501633211211899999988866504445506
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999987409
Q gi|254780524|r 465 IMFTDKMLQTLLEGVK 480 (480)
Q Consensus 465 ItT~Demlq~Lin~~R 480 (480)
|+|+|+|||+||||||
T Consensus 408 i~T~D~mlq~lvnLkr 423 (423)
T COG1749 408 ITTSDQMLQTLVNLKR 423 (423)
T ss_pred EEEHHHHHHHHHHHCC
T ss_conf 8605899999986229
No 19
>PRK12637 flgE flagellar hook protein FlgE; Provisional
Probab=100.00 E-value=0 Score=367.87 Aligned_cols=437 Identities=15% Similarity=0.078 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC------CCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999867874420257899812679998604------660699899872068878887754445567887
Q gi|254780524|r 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS------PENVTVVTQRSENKNMFDKVLHAHSSAIGQQRL 79 (480)
Q Consensus 6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (480)
+||+|+|||++||++|+||||||||+||+||||+|++|+++ +.|+.+..+. ..+.++.+..+....++++.
T Consensus 2 ~~~~GvsGl~a~~~~l~vi~nNiAN~~T~gfK~~~~~F~~~~~~~~~g~g~~~~~~~---~~~~~G~~~~t~~~~d~ai~ 78 (473)
T PRK12637 2 GFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAIN---QRFTVGNISTTGGEYDMAID 78 (473)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEE---EEECCCCEEECCCCCEEEEE
T ss_conf 377899999998855325514767377600085667166754558766734764789---88256780667983438894
Q ss_pred -HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -8789988865126777776401136677766876413867530011221012222221000224565665432000111
Q gi|254780524|r 80 -LQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADADKEIEL 158 (480)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (480)
+.+||.+.+. .+..+|+|.+.|..+.++++.++.+.+++++..+........+ +..... +.+
T Consensus 79 ~g~GfF~v~~~------~~~~~yTR~G~F~~d~~g~lv~~~G~~lqG~~~~~~g~~~~~i----------~l~~~~-~~p 141 (473)
T PRK12637 79 GGKGFFRLTDQ------SGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGVGAQPVDL----------QLPQGN-IAP 141 (473)
T ss_pred CCCEEEEEECC------CCCEEEECCCCEEECCCCEEECCCCCEEECCCCCCCCCCEEEE----------ECCCCC-CCC
T ss_conf 69707999738------9966774364266879970985899887764467788740113----------546777-587
Q ss_pred HH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---CEEEEEEEECCC-----CEEEEECCCCEEEEC
Q ss_conf 27-878875434321011222345667652100121000010100---201247873377-----114787069706103
Q gi|254780524|r 159 EI-SNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKIS---EIIGISTIVRNN-----NDMVVYTSDGTTLFE 229 (480)
Q Consensus 159 ~v-~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s---~~~~~~~~~~~~-----~~~~v~~~~g~~l~~ 229 (480)
.. ..+ .....++..............+..-..+....... ...........+ +.+.+ ..+....+
T Consensus 142 ~aTt~~----~~~~NL~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~d 215 (473)
T PRK12637 142 QATSTA----GLQTNLNANAKVIDPNDTPAVDGTVELDGTTYRFTNAGGTFAWVAPAPLDGTYNGGDIVI--AGGAVTGD 215 (473)
T ss_pred CCCEEE----EEEEECCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCEEE--CCCCCCCC
T ss_conf 432058----788840677644477666454650101451257623676022201233356434552022--05520133
Q ss_pred CC--C---------CEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCC---C-CCC--CCCCHHHCCCCCHHHHHHHHH
Q ss_conf 44--4---------12576304566676643216733655665677666---7-653--111011102331367787887
Q gi|254780524|r 230 TV--P---------RDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAV---P-KGK--IKALLQIRDSVVPIFQNQLDE 292 (480)
Q Consensus 230 ~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~g~--~~~~~~~~~~~~~~~~~~~~~ 292 (480)
.. + ....++................+............ + .+. ........+.... .
T Consensus 216 ~~~~~~~~~~~~~~~~~~~d~t~~~~~~~~~~~~v~ds~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~-------~ 288 (473)
T PRK12637 216 LASQPGYQPYKPLVAGIPFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQPM-------Q 288 (473)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCC-------C
T ss_conf 235666544332123565687777531344306988268982578999861467787743689995378731-------2
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65543100123455777777654-3211-223456666543322222233333466621000245666655556665443
Q gi|254780524|r 293 MARVLIGSFSEKDPIAGNSENVP-GLFI-ADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAG 370 (480)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (480)
.... ....-..+..+....... .... .......................++..... ......+..........+..
T Consensus 289 ~~~~-~~~tl~fd~~g~l~~~~~~~~~t~~~~~~~~~~~~~~~it~~~~g~Tq~~s~~~-~~~~qdG~~~G~L~~~~Id~ 366 (473)
T PRK12637 289 VNGG-ASQTLNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQYGSDFA-PKVVQNGYSSGEFMGLSVGK 366 (473)
T ss_pred CCCC-CCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCC-CEECCCCCCCCEEEEEEECC
T ss_conf 3577-630588658885147887421576257877676776048872665167546665-12302784454156889899
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 10245676642011112333345677652899998777887664211123223456799999998876628888999999
Q gi|254780524|r 371 YPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSF 450 (480)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tn 450 (480)
++.....+.++........+++.+.+...|.....+. |.++..||.+.+++|+++++|+|.+++||+|||||++||++
T Consensus 367 dG~I~g~ySNG~t~~l~qIaLA~F~Np~GL~~~G~n~--y~~T~~SG~~~~g~ag~gg~G~I~~gaLE~SNVDLa~Eft~ 444 (473)
T PRK12637 367 DGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVGNNA--WVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVN 444 (473)
T ss_pred CCEEEEEECCCCEEEEEEEEEEEECCHHHCEECCCCE--EECCCCCCCCEECCCCCCCCCEEEECCEEHHHHHHHHHHHH
T ss_conf 9489999879959898899999616958660137963--87201378855757998886217217540244079999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998740
Q gi|254780524|r 451 LIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 451 LI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
||++||+||||||+|+|+|||||||||||
T Consensus 445 mIvtQR~yQANSKvItTsDemLqelinLK 473 (473)
T PRK12637 445 MIVAQRTYQANAQTIKTQDEVMQVLMNMR 473 (473)
T ss_pred HHHHHHHHHHHCEEEEEHHHHHHHHHHCC
T ss_conf 99987650143258875899999997059
No 20
>PRK05682 flgE flagellar hook protein FlgE; Validated
Probab=100.00 E-value=0 Score=348.06 Aligned_cols=397 Identities=13% Similarity=0.065 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-------------CCCEEEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 89999999999999867874420257899812679998604-------------66069989987206887888775444
Q gi|254780524|r 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------PENVTVVTQRSENKNMFDKVLHAHSS 72 (480)
Q Consensus 6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (480)
|||+|+|||+|||++|+||||||||+||+||||+|++|+++ +.||.+..+.+ .+.++.+..+..
T Consensus 2 sl~tgvSGl~a~~~~l~visnNiAN~nT~GyK~~~~~F~~~~~~~~~~~~~~~~g~Gv~~~~~~~---~~~qG~~~~T~~ 78 (414)
T PRK05682 2 SFNTGVSGLNAASNDLDVIGNNIANANTTGFKESRAEFADLYANSSSSNSGSQVGLGVKTAGVAQ---QFTQGTITSTGN 78 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEE---ECCCCCEEECCC
T ss_conf 58899999999986016776778767753008775516786521256788874344178515887---637778577798
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 55678878789988865126777776401136677766876413867530011221012222221000224565665432
Q gi|254780524|r 73 AIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADA 152 (480)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
.+++++.+.+||.+. ..+...++|.+.|..+..+++.++.+.++.++..+........... ..+.+++...
T Consensus 79 ~~D~ai~G~GfF~v~-------~~~~~~yTR~G~F~~d~~G~Lv~~~G~~l~G~~~d~~~~~~~~~~~--~~l~~I~i~~ 149 (414)
T PRK05682 79 SLDLAISGNGFFVVS-------SNGSVFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPNGVQN--ANLVPLQIPT 149 (414)
T ss_pred CCEEEECCCCEEEEC-------CCCCEEEEECCCEEECCCCEEECCCCCEEEEEEECCCCCCCCCCCC--CCCCCEECCC
T ss_conf 321787377438864-------8995688855618885588198599998870450478875443345--7744346047
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEECCCC
Q ss_conf 00011127878875434321011222345667652100121000010100201247873377114787069706103444
Q gi|254780524|r 153 DKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGISTIVRNNNDMVVYTSDGTTLFETVP 232 (480)
Q Consensus 153 ~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~g~~l~~~~~ 232 (480)
....+. ..........++.++.....................+.+++..|.
T Consensus 150 ~~~~~~----------------------~Tt~~~~~~NL~~~~~~~~~~~~~~~~~~~~~~~t~~~vyDs~G~------- 200 (414)
T PRK05682 150 TALAPK----------------------ATTTVTFQGNLNSTAPVPAVTPFDPTDADTYNKSTSVTVYDSLGN------- 200 (414)
T ss_pred CCCCCC----------------------CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-------
T ss_conf 667864----------------------310576630147777566666667778765320345998868997-------
Q ss_pred CEEEEEECCCCCCCCCCCEEEECCC-CCCCCCCCCCCCC-CCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 1257630456667664321673365-5665677666765-3111011102331367787887655431001234557777
Q gi|254780524|r 233 RDINFEKMNSYTVTSESNPIFIDGV-VVSSNQGSAVPKG-KIKALLQIRDSVVPIFQNQLDEMARVLIGSFSEKDPIAGN 310 (480)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (480)
...............|........ ............. ...+.+.+... +.+.. .......+.
T Consensus 201 -~~~l~~~f~k~~~n~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~F~~~------G~l~~--------~~~~~~~~~- 264 (414)
T PRK05682 201 -SHTLDVYFVKTGDNTWQVYVYDDGKAVDGPTTPTGTAGTTTAGTLTFDSN------GALTS--------FTIAINGGA- 264 (414)
T ss_pred -EEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCC------CCCCC--------CCCCCCCCC-
T ss_conf -48999999965898068999747876566655455556565421687688------72424--------666555677-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 7765432112234566665433222222333334-666210002456666555566654431024567664201111233
Q gi|254780524|r 311 SENVPGLFIADGIKDLDNKLCQGISETICVNPQY-RSNPSFLRDGGSVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFD 389 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
........+. ...... ............+..........+..++.....+.++........
T Consensus 265 --~~~~~i~ld~----------------~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~dG~i~a~~sNG~~~~l~qi 326 (414)
T PRK05682 265 --TPAGTLTLDL----------------SGSTQQGTGFFNVSATTQDGYAPGTLTGVSIDDDGTVVATYSNGQTKPLGQI 326 (414)
T ss_pred --CCCCEEEECC----------------CCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf --8774068724----------------5640221466542211357722230466788899679999779957787688
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33456776528999987778876642111232234567999999988766288889999999999999999999999999
Q gi|254780524|r 390 PVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 (480)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~D 469 (480)
+++.+.+...|.....++ |.++..||.+.+++|+++++|+|.+++||+|||||++||++||++||+||||||+|+|+|
T Consensus 327 ~la~F~N~~gL~~~g~n~--y~~t~~SG~~~~g~~g~~g~G~i~~g~LE~SNVDla~E~t~mI~~QRaYqANskvItTsD 404 (414)
T PRK05682 327 ALANFANPDGLTKVGGNV--WSATAASGVALIGAAGSGGFGTIQSGALESSNVDLTTELVDMIVAQRNYQANAKTIKTQD 404 (414)
T ss_pred EEEEECCHHHHHHHCCCE--EECCCCCCCCEECCCCCCCCEEEEECCEEHHCCCHHHHHHHHHHHHHHHHHHHEEEEEHH
T ss_conf 788626978977524971--764111587533689988712485364050017799999999999877467403456199
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998740
Q gi|254780524|r 470 KMLQTLLEGV 479 (480)
Q Consensus 470 emlq~Lin~~ 479 (480)
||||+|||||
T Consensus 405 emLq~linlK 414 (414)
T PRK05682 405 QLLQTLVNLR 414 (414)
T ss_pred HHHHHHHHCC
T ss_conf 9999997259
No 21
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod . The rod consists of about 26 subunits of flgG in the distal portion, and flgB, flgC and flgF are thought to build up the proximal portion of the rod with about 6 subunits each.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0009426 flagellin-based flagellum basal body distal rod.
Probab=100.00 E-value=0 Score=303.88 Aligned_cols=234 Identities=16% Similarity=0.126 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-------------------------CCCEEEEEEEEEHH
Q ss_conf 89999999999999867874420257899812679998604-------------------------66069989987206
Q gi|254780524|r 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------------------------PENVTVVTQRSENK 60 (480)
Q Consensus 6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~-------------------------~~g~~~~~~~~~~~ 60 (480)
|||+|-+||.|+|++|||||||||||||+||||+||+|+|+ |.||+..++. .
T Consensus 1 aL~tAaTGM~AQQtn~~VIsNNLANVnT~GFKk~RA~FEDL~YQ~~r~pG~q~~~~~t~~P~G~~~G~GVr~~at~---k 77 (263)
T TIGR02488 1 ALWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLLYQTVRQPGAQSSEQQTILPVGVQVGLGVRVVATQ---K 77 (263)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEECCCEEEEEEE---E
T ss_conf 9303365588873578887763311023441212367655747731258888777630034662435850423576---6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHCCCCCCCC
Q ss_conf 8878887754445567887878998886512677777640113667776687641386---7530011221012222221
Q gi|254780524|r 61 NMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNL---SEDILGKTVIDNAEEVVQN 137 (480)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 137 (480)
.|.++.+..+...+|+++.|.|||.+..+ ++...|+|-|.|...-++-+.+. .+..+.-
T Consensus 78 ~~~QG~lq~TgN~LDlAI~G~GFFQv~~p------DG~~~YTR~G~F~~n~~G~lVt~~aq~Gy~l~P------------ 139 (263)
T TIGR02488 78 LFTQGSLQNTGNDLDLAIEGEGFFQVLLP------DGTTAYTRDGAFKLNAEGQLVTSSAQDGYPLQP------------ 139 (263)
T ss_pred EEECCCEECCCCCCCEEEECCCEEEEECC------CCCEEECCCCCCCCCCCCCEECCCCCCCCEECC------------
T ss_conf 64167201058760047864833898669------987610124674608995276443468965366------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEE-EEECCCCE
Q ss_conf 00022456566543200011127878875434321011222345667652100121000010100201247-87337711
Q gi|254780524|r 138 FNTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFLDQRDVLLQKISEIIGIS-TIVRNNND 216 (480)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~-~~~~~~~~ 216 (480)
+|.-.. ++. . .....++.
T Consensus 140 --------------------------------------~ItiP~----~A~-------------------~ni~v~~dG~ 158 (263)
T TIGR02488 140 --------------------------------------EITIPE----NAT-------------------SNITVGSDGE 158 (263)
T ss_pred --------------------------------------EEECCC----CCC-------------------EEEEECCCCE
T ss_conf --------------------------------------247188----870-------------------1069867878
Q ss_pred EEEECCCCEEEECCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 47870697061034441257630456667664321673365566567766676531110111023313677878876554
Q gi|254780524|r 217 MVVYTSDGTTLFETVPRDINFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMARV 296 (480)
Q Consensus 217 ~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (480)
+.|...+....
T Consensus 159 VsV~~~~~~~~--------------------------------------------------------------------- 169 (263)
T TIGR02488 159 VSVRQGGQTEP--------------------------------------------------------------------- 169 (263)
T ss_pred EEEEECCCCCC---------------------------------------------------------------------
T ss_conf 99983789720---------------------------------------------------------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 31001234557777776543211223456666543322222233333466621000245666655556665443102456
Q gi|254780524|r 297 LIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLIN 376 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (480)
T Consensus 170 -------------------------------------------------------------------------------- 169 (263)
T TIGR02488 170 -------------------------------------------------------------------------------- 169 (263)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 76642011112333345677652899998777887664211123223456799999998876628888999999999999
Q gi|254780524|r 377 HYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQ 456 (480)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~Qr 456 (480)
.......++.|.++.+|.....|+ +++|.+||.|..+.|+..++|.|..+.||+|||++=+||||||.+||
T Consensus 170 -------~~~GQi~la~FiNPAGL~a~G~NL--f~eT~ASG~p~~g~Pg~~G~G~l~QG~LE~SNV~vV~EmvdmI~aQR 240 (263)
T TIGR02488 170 -------QEVGQITLATFINPAGLEAVGENL--FRETPASGDPIVGTPGLDGFGKLKQGFLEASNVNVVQEMVDMITAQR 240 (263)
T ss_pred -------EEEECCCEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCHHHHHHHHHHHHH
T ss_conf -------001010112101543477345641--01578868876888888873388816163026744566642336888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998740
Q gi|254780524|r 457 SYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 457 aYqANakvItT~Demlq~Lin~~ 479 (480)
||+.|||+|+|+|+|||++-+++
T Consensus 241 AYE~NSK~i~asD~Mlq~~~~~~ 263 (263)
T TIGR02488 241 AYEMNSKVIQASDQMLQTVSQLL 263 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98775388887999999996129
No 22
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00 E-value=7.8e-44 Score=287.30 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 43102456766420111123333456776528999987778876642111232234567999999988766288889999
Q gi|254780524|r 369 AGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEEL 448 (480)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~ 448 (480)
...+.++..|+++.........++.+.++.+|.....|+ +-.+..||.+..++++++++|+|..++||||||||+.-|
T Consensus 768 D~~G~LlGeFsNGk~~alA~vA~As~aNN~GL~a~GgNl--f~~TaNSGepvVG~AgtGgRG~~~~SaLEMSNVDLSRsL 845 (877)
T TIGR02489 768 DSNGNLLGEFSNGKTLALAQVALASFANNSGLQAEGGNL--FSQTANSGEPVVGEAGTGGRGEVSTSALEMSNVDLSRSL 845 (877)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCE--EEECCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 378747553038603687788877300543302126711--543134388206325888878604452100100466643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999987409
Q gi|254780524|r 449 SFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 449 tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
|.||+.||+||||||.|+|+|||||+|||||.
T Consensus 846 T~LIvvQRGfQANSKtvtTSDQiL~TLlqLKQ 877 (877)
T TIGR02489 846 TQLIVVQRGFQANSKTVTTSDQILNTLLQLKQ 877 (877)
T ss_pred HHEEEEECCEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 01277651411456403015789999974059
No 23
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=100.00 E-value=1.6e-36 Score=242.28 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 412 ~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.+..++.+....|++...++|..++||.||||+.+||++||.+||+||+|+|+|+++|||+|+++||||
T Consensus 195 ~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVn~~~Emv~mI~~qRaye~n~K~i~~~De~~~~~~nl~R 263 (263)
T PRK12636 195 ETLNSGAPQVVVPGEGGTGKIQSGALEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKR 263 (263)
T ss_pred ECCCCCCCCCCCCCCCCCCEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 136677755467787876416038476134759999999999999999998899999999999997459
No 24
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=100.00 E-value=4.8e-35 Score=233.08 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 410 ~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
+..+..++ +..+.|+..+.+.|+.+.||.||||+.+|||+||++||+|++|+|+|+++|+|++++.|++|
T Consensus 196 ~~~t~~sg-~~~~~~~~~~~g~i~QG~lE~SNVn~v~EMt~mI~aqRayE~nsK~i~~~D~m~~~~~n~~~ 265 (265)
T COG4786 196 YQETAASG-PIVGVPGDNGFGAIRQGFLEASNVNVVEEMTDMIEAQRAYEANSKVIQTADEMLGKANNLLR 265 (265)
T ss_pred CCCCCCCC-CCCCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 10168877-75467787875527864121205679999999999999999887886658999999986549
No 25
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=7e-36 Score=238.26 Aligned_cols=69 Identities=25% Similarity=0.418 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 412 ~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.+..++.+....++...+++|..++||.||||+.+||++||.+||+||||+|+|+|.|||+|+++||+|
T Consensus 194 ~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Em~~mI~~qRaye~n~k~i~t~De~~~~a~nllR 262 (262)
T PRK12691 194 ETPASGAPQVGVPGEDGFGTIRQGYLEASNVDVVKEITDLITAQRAYEMNSKVISAADEMLQTTSKNLR 262 (262)
T ss_pred ECCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 336778851156788872268438565344659999999999999999999999999999999998668
No 26
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=100.00 E-value=1.4e-35 Score=236.31 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8766421112322345679999999887662888899999999999999999999999999999998740
Q gi|254780524|r 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 410 ~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
|..+..++.+....|+....++|..++||.||||+.+||++||.+||+||||+|+|+|.|||+|+++||+
T Consensus 192 f~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Em~~mI~~qR~ye~n~K~i~t~De~l~~~~nll 261 (261)
T PRK12693 192 YLETAASGAPVEGTPGLNGLGTLRQGFLETSNVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261 (261)
T ss_pred EEECCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6534777785336788787225853856544466999999999999999999789999999999998629
No 27
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=8.1e-35 Score=231.70 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 412 ~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.+..++.+..+.|.....+.|..++||.||||+.+||++||.+||+||+|+|+|++.|||++.++||+|
T Consensus 196 ~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNV~~~~EMv~mI~~qR~fe~~~K~i~t~De~~~~~~nl~R 264 (264)
T PRK12816 196 ETVASGQEIPGTPGSEGMGKVLQGFLEMSNVSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANNLKR 264 (264)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 266677755577787872058328476223659999999999999999999999999999999986269
No 28
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.98 E-value=1.4e-34 Score=230.24 Aligned_cols=68 Identities=25% Similarity=0.367 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76642111232234567999999988766288889999999999999999999999999999999874
Q gi|254780524|r 411 LEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 (480)
Q Consensus 411 ~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~ 478 (480)
..+..++.+....|+....+.|..++||.||||+.+||++||.+||+||||+|+|+|.|||++.|+||
T Consensus 193 ~~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNVd~~~Emv~mI~~qRaye~~~k~i~t~De~l~~~~ql 260 (260)
T PRK12694 193 AETTSSGAPNVSQPGLNGAGTLKQGYVEASNVNVVEELVNMIQTQRAYEINSKAVTTSDQMLQRLTQM 260 (260)
T ss_pred ECCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 20367788754667878731684486752146399999999999999999988999999999998668
No 29
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.97 E-value=1.5e-34 Score=229.97 Aligned_cols=69 Identities=23% Similarity=0.417 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 412 ~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.+..++.+..+.++...+++|..++||.||||+.+||++||.+||+||+|+|+|++.|||++++-+++|
T Consensus 194 ~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~EMv~mI~~qRafe~n~k~i~~~Dem~~~~~~liR 262 (262)
T PRK12692 194 ETPASGAPVVGVPGDVGFGKIQQGYLESSNVDPVKEITELISAQRAFEMNSKVIQAADEMAGTVSKGIR 262 (262)
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 466677854467887874538317610355659999999999999999999999999999999997639
No 30
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.96 E-value=2.4e-32 Score=216.40 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=47.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998876628888999999999999999999999999999999987409
Q gi|254780524|r 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 431 ~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.|..++||.||||+.+||++||.+||+||+|+|+|++.|||++.+.||+|
T Consensus 212 ~v~qG~LE~SNV~~~~EMv~li~~qRaye~n~k~i~t~Dem~~~~nnlrr 261 (261)
T PRK12817 212 SILQGYLENSNVDLGKEMTDMIITQRAFQLSSKGIKTADEMWGIINNMRK 261 (261)
T ss_pred EEECCCEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 18648521121739999999999999999998999999999999986179
No 31
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.96 E-value=8.1e-31 Score=207.02 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=47.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998876628888999999999999999999999999999999987409
Q gi|254780524|r 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 431 ~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.|..++||.||||+.+||++||.+||+||+|+|+|+++|||++.+.+++|
T Consensus 195 ~v~qG~LE~SNV~~~~Em~~mI~~qRaye~n~k~i~~~Dem~~~an~l~R 244 (246)
T PRK12640 195 RVVSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADDNAQAANQLLR 244 (246)
T ss_pred EEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 27645153235679999999999999999999999989999999998742
No 32
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.95 E-value=9.8e-30 Score=200.32 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999887662888899999999999999999999999999999998740
Q gi|254780524|r 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 431 ~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
.|..++||.||||+.+||++||.+||+||+|+|+|++.|||++.+||-+
T Consensus 200 ~v~qG~LE~SNVd~~~EM~~mI~~qRafe~n~k~i~~~Dem~~~ai~~l 248 (253)
T PRK12689 200 RVEQGYIEKSNVNAVLEMTRMMEVTRTYTQVSSMLQQQSDLRKTAIEKL 248 (253)
T ss_pred EEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1602732202364999999999999999999999999999999999997
No 33
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.95 E-value=1.8e-29 Score=198.72 Aligned_cols=114 Identities=9% Similarity=0.012 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE---CC-----------------CCEE-EEEEEEEHHH
Q ss_conf 3588999999999999986787442025789981267999860---46-----------------6069-9899872068
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI---SP-----------------ENVT-VVTQRSENKN 61 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~---~~-----------------~g~~-~~~~~~~~~~ 61 (480)
|..+||+|.|||++.+.+||||+|||||+||+||||.++.|.+ +. .... +..+......
T Consensus 1 M~~~ly~a~sgm~a~~~~ldviaNNlAN~nT~GfK~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (255)
T PRK12818 1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKSDNLAFKSFEDVLIENYDKKVGNKNIKNIIGGLSMGSKIDEVNTL 80 (255)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 96689999999999998778998999877756448585006568999864104446786666644541452264356764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 87888775444556788787899888651267777764011366777668764138675300
Q gi|254780524|r 62 MFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDIL 123 (480)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (480)
|.++.+..+...++.++.+.+||.+. ..+..+++|-|.|..+.++++.++.+..+
T Consensus 81 ~~qG~l~~Tg~~lDlAI~G~GfF~V~-------~~g~~~yTR~G~f~vd~~G~Lvt~~G~~v 135 (255)
T PRK12818 81 FTQGIIKSTDKPTDFAIQGRGFFTVE-------RNGRNYYTRDGHFHVDTQGYLVNDSGYYV 135 (255)
T ss_pred CCCCCEEECCCCCEEEECCCCEEEEE-------CCCCEEEEECCCEEECCCCCEECCCCCEE
T ss_conf 27878454598104998698589995-------59965899756577989976892899892
No 34
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.95 E-value=1.8e-28 Score=192.60 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=45.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999887662888899999999999999999999999999999998740
Q gi|254780524|r 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 432 i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
|..++||.||||+.+||++||.+||+||+|+|+|++.|+||+.+|+.+
T Consensus 190 v~qG~LE~SNVd~~~EM~~lI~~qRafe~~~k~i~~~D~~l~~ai~~l 237 (241)
T PRK12642 190 VVQGYLEGSNVNAMTEMTRLISVSRAFESVSSLMRDSESSVSEAIKTL 237 (241)
T ss_pred EECCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 775741033062999999999999999999999999999999999987
No 35
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.94 E-value=9.5e-29 Score=194.25 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=47.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998876628888999999999999999999999999999999987409
Q gi|254780524|r 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 431 ~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.|..++||.||||+.+||++||.+||+||+|+|+|+++|||++..-+|.|
T Consensus 200 ~v~qG~LE~SNVd~~~EM~~lI~~qRaye~n~K~i~~~Dem~~~an~L~~ 249 (252)
T PRK12641 200 RLQSGMLEDSNVNLEKNMIEMISNARQFEMQMKIISMCDQNTEYANQLLN 249 (252)
T ss_pred EEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 48626400244669999999999999999999999999999999998755
No 36
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=99.94 E-value=2.4e-28 Score=191.78 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999887662888899999999999999999999999999999998740
Q gi|254780524|r 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 430 g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
+.|+.++||.||||+.+||++||.+||+||+|+|+|+++|||+++++|=+
T Consensus 206 ~~i~qG~LE~SNV~~~~Em~~mI~~qRafe~~~K~i~t~Dem~~ka~n~l 255 (257)
T PRK12819 206 GIVKNGMLENSNVDMTKEMADLMTNQRMIQASQRVMTSFDKIYEKEANEI 255 (257)
T ss_pred CEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43850651000366999999999999999999899899999999998975
No 37
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.94 E-value=1.2e-27 Score=187.55 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=46.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999887662888899999999999999999999999999999998740
Q gi|254780524|r 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 431 ~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
+|..++||.||||+.+||++||.+||+||+|+|+|++.|||++.+||-+
T Consensus 187 ~v~qG~LE~SNVn~~~EMv~mI~~qR~fe~~~k~i~~~De~~~~ain~l 235 (237)
T PRK12690 187 SLLQGFLEGSNVNPILEIARMIEVQRAYELGQSFLDAEDDRIRQTIRTL 235 (237)
T ss_pred EEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4873521012268999999999999999999899999999999999985
No 38
>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog HMMs, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.
Probab=99.92 E-value=3.6e-29 Score=196.82 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECC-----------CCEEEEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 8899999999999998678744202578998126799986046-----------60699899872068878887754445
Q gi|254780524|r 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISP-----------ENVTVVTQRSENKNMFDKVLHAHSSA 73 (480)
Q Consensus 5 ~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~ 73 (480)
.|||+|+|||++++.+|+||+|||||+||+||||.++.|+++. .++..... ...+.++.+..+...
T Consensus 1 ~sly~a~sgm~a~~~~l~visnNlAN~nT~GfK~~~~~F~~~~~~~~~~~~~~~~gv~~~~~---~~~~~qG~l~~Tg~~ 77 (231)
T TIGR03506 1 MALYTALSGLNAQSKALDVIANNIANANTTGFKASRAEFSDLLAQSGSGSGQVGGGVRAAAV---GTDFSQGSLQTTGNP 77 (231)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHCCCCCCCCCCCCEEEEEE---EEECCCCCEEECCCC
T ss_conf 94899999999999867888888887776443547241788752347887755545784156---876388882566883
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 56788787899888651267777764011366777668764138675300112
Q gi|254780524|r 74 IGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKT 126 (480)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (480)
+|.++.+.+||.+... .+...++|.+.|..+.++++.+..+.++.++
T Consensus 78 lDlAI~G~GfF~V~~~------~G~~~yTR~G~F~~d~~G~Lv~~~G~~vlg~ 124 (231)
T TIGR03506 78 LDLAINGDGFFAVQTP------DGSEAYTRAGSFQLDANGYLVTADGYPLLGW 124 (231)
T ss_pred CEEEECCCEEEEEECC------CCCEEEEECCCEEECCCCCEECCCCCEEECC
T ss_conf 2189869638999889------9978487645378989998887899880777
No 39
>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. This entry contains proteins only from the proteobacteria, and not in the epsilon subdivision (where the architecture of the related FlgE protein differs substantially from other lineages).; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=99.57 E-value=4.9e-16 Score=115.81 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=44.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998876628888999999999999999999999999999999987409
Q gi|254780524|r 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 431 ~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
+|.+++||.|||+.-+|||+||..+|.|+..=|+|+|+||+=|.-=.|+|
T Consensus 204 ~v~~g~LEgSNVnav~emv~mI~l~RqFE~Q~Kmm~tA~~na~aan~Ll~ 253 (254)
T TIGR02490 204 RVVSGALEGSNVNAVEEMVSMISLSRQFEMQVKMMKTAEDNAQAANRLLR 253 (254)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 45068554777528899999998753467788999878788999988405
No 40
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.40 E-value=4.6e-15 Score=109.81 Aligned_cols=107 Identities=9% Similarity=0.049 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEE-----E-EEEEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 3588999999999999986787442025789981267999860466069-----9-899872068878887754445567
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVT-----V-VTQRSENKNMFDKVLHAHSSAIGQ 76 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~~~g~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~ 76 (480)
|-.++|+|+|||++++.+++||+|||||+||+|||++.+.|.++..... . .........+.++.+..+...++.
T Consensus 1 Mdr~iYtA~sg~~~~~~~~~viaNNLANvnT~GFK~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~qG~l~~Tg~~LDl 80 (209)
T PRK12643 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDISQGTMNFSGRPLDV 80 (209)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCEEECCCCEEE
T ss_conf 92689999999999999888998887747876443104534231224777653311330465046167573515983039
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 887878998886512677777640113667776687641
Q gi|254780524|r 77 QRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYS 115 (480)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (480)
++.+.+||.+... .+...|+|.++|..+-++.+
T Consensus 81 AI~G~GfF~V~~~------~G~~aYTR~G~f~vd~~G~L 113 (209)
T PRK12643 81 ALQQDGYLAVQLP------DGSEAYTRNGNIQISANGQM 113 (209)
T ss_pred EEECCCEEEEECC------CCCEEEEECCCEEECCCCCE
T ss_conf 9808958999858------99567887887159999879
No 41
>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=99.22 E-value=2.6e-11 Score=86.69 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=43.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8876628888999999999999999999999999999999987409
Q gi|254780524|r 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 435 ~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
|+.+.||||+.+||++||.+||+|+||.++|.++++|++.+|++-|
T Consensus 93 GyV~~pNVd~~~Emvdm~~A~R~YeAN~~~~~~~k~m~~~~L~igk 138 (139)
T PRK05681 93 GYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQ 138 (139)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7154289888999999999999999999999999999999998743
No 42
>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=99.19 E-value=2.6e-11 Score=86.64 Aligned_cols=39 Identities=38% Similarity=0.532 Sum_probs=37.9
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 288889999999999999999999999999999999874
Q gi|254780524|r 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 (480)
Q Consensus 440 SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~ 478 (480)
||||+.+||++||.+||+||||+|+|++.|+|++++|++
T Consensus 1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~~ 39 (39)
T pfam06429 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL 39 (39)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988789999999999999899999998899999998763
No 43
>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=99.17 E-value=3.5e-11 Score=85.85 Aligned_cols=58 Identities=31% Similarity=0.367 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CEEEEEEEEEC----------CCCEEEEEEEEE
Q ss_conf 91358899999999999998678744202578998------12679998604----------660699899872
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS----------PENVTVVTQRSE 58 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~G------yk~~~~~f~~~----------~~g~~~~~~~~~ 58 (480)
|+||.+|.++.|||.|++.+|++|++||||++|++ |+|+++.|+.. +.||++..+...
T Consensus 1 M~~~~~~~ia~sgl~aq~~rl~~~a~NiAN~~tt~t~~g~pYr~k~vvf~~~~~~~~~~~~~~~gV~v~~i~~d 74 (139)
T PRK05681 1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAGPDGDPYRRKQVVFAAFGSAELDRGQGTGGVKVAKIVED 74 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECC
T ss_conf 95388899999999999999999998553267778999987643124553033100024678776588777438
No 44
>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.09 E-value=1.3e-10 Score=82.39 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=42.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 876628888999999999999999999999999999999987409
Q gi|254780524|r 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 436 ~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
+...+|||+.+||++||.++|+||||..+|.++.+|++.+|.+.|
T Consensus 85 yV~~pnVd~~~EMvdm~~AsRsYeANv~v~~t~k~M~~~~L~i~r 129 (130)
T PRK12632 85 YYDGSNVDLVIEIADAREAQRSYEANLRMFDQARQMSSSLLDLLR 129 (130)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 736899788999999999999999999999999999999999842
No 45
>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.02 E-value=4.4e-10 Score=79.10 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC
Q ss_conf 9135889999999999999867874420257899812679998604
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~ 46 (480)
|.|+.+|.++-|||.|++.+|++|++||||++|++|+|+.+.|+..
T Consensus 2 ~d~~~~~~Ia~Sgl~Aq~~Rl~~iA~NiANa~t~~y~~k~v~f~~~ 47 (130)
T PRK12632 2 TDFSKSLSVSASGMRAQALRLRHVSENIANADTPGYRRKTVSFQEE 47 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC
T ss_conf 0388999999999999999999999874336887643344400012
No 46
>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella. FlgC is part of the basal body. ; GO: 0019861 flagellum.
Probab=99.00 E-value=2.4e-10 Score=80.67 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=43.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8876628888999999999999999999999999999999987409
Q gi|254780524|r 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 435 ~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
|+..+.|||+-+||+|||.++|+||||-++|+++-+|+...|.|.|
T Consensus 102 GYV~~PNVn~~~EMVdmi~A~RsYeANv~v~~~~K~m~~~tL~~~~ 147 (147)
T TIGR01395 102 GYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMLLRTLEIGR 147 (147)
T ss_pred CCEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8470585585432321120024788999999999999999999709
No 47
>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=98.99 E-value=5.8e-10 Score=78.36 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=42.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8876628888999999999999999999999999999999987409
Q gi|254780524|r 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 435 ~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
|+...+|||+.+||++||.+||+||||..+|.++.+|++.+|.+-|
T Consensus 92 GyV~~pnVn~~~EMvdm~~AsRsYeANv~v~~tak~m~~~tL~i~r 137 (138)
T PRK12782 92 GYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVSMTIDLLR 137 (138)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8854689888999999999999999999999999999999999850
No 48
>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.96 E-value=1.1e-09 Score=76.60 Aligned_cols=45 Identities=27% Similarity=0.340 Sum_probs=41.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 876628888999999999999999999999999999999987409
Q gi|254780524|r 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 436 ~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
+...+|||+.+||++||.+||+||||..+|.++.+|++..|.+-|
T Consensus 94 yV~~pNVd~~~EMvdm~~A~RsYeANv~~~~~ak~m~~~aL~Igk 138 (138)
T PRK12631 94 FIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLRMGK 138 (138)
T ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 884489888999999999999999999999999999999997459
No 49
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.95 E-value=1.1e-09 Score=76.62 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=40.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8766288889999999999999999999999999999999874
Q gi|254780524|r 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 (480)
Q Consensus 436 ~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~ 478 (480)
+...+|||+.+||++||.++|+||||..+|.++-+|++..|.+
T Consensus 96 yV~~pnVn~~~EMvdm~~AsRsYEANv~v~~~aK~M~~~aL~I 138 (140)
T PRK12628 96 FVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQL 138 (140)
T ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6734898889999999999999999999999999999999861
No 50
>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion]
Probab=98.92 E-value=2.5e-09 Score=74.37 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=42.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8876628888999999999999999999999999999999987409
Q gi|254780524|r 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 435 ~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
|+.++.|||+-.||+|||.++|+||||..+|.++-+|++..|.+-|
T Consensus 92 GYV~~PNVn~v~EM~dmisAsRsYeANv~v~~~~K~m~~~tL~i~~ 137 (137)
T COG1558 92 GYVKMPNVNVVIEMVDMISASRSYEANVEVLNTAKSMMQKTLELGQ 137 (137)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7556587658999999999999899999999999999999997519
No 51
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.92 E-value=1.3e-09 Score=76.24 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=41.8
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 876628888999999999999999999999999999999987409
Q gi|254780524|r 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 436 ~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
+...+|||+.+||++||.++|+||||-.+|.++.+|++..|.+-|
T Consensus 99 yV~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m~~~tL~igk 143 (143)
T PRK12630 99 YVSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSMFSKALEIGK 143 (143)
T ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 884689888999999999999999999999999999999998559
No 52
>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.89 E-value=2.4e-09 Score=74.59 Aligned_cols=45 Identities=31% Similarity=0.430 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCEEEEEEEEE
Q ss_conf 913588999999999999986787442025789------981267999860
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADN------KNYVRRDTMTTI 45 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT------~Gyk~~~~~f~~ 45 (480)
||||++|.++-|||.|++.+|+||+.||||++| .-|+|.++.|..
T Consensus 1 Ms~~~~~~Ia~sgl~Aqr~Rm~via~NiANa~tt~~~~g~~Yr~k~~vf~~ 51 (138)
T PRK12631 1 MSLFNIFDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPIFEA 51 (138)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHH
T ss_conf 962667869999999999999999987763476788999987312211135
No 53
>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.89 E-value=1.8e-09 Score=75.26 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=42.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8876628888999999999999999999999999999999987409
Q gi|254780524|r 435 SYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 435 ~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
|+...+|||+.+||++||.+||+||||..+|.++-+|++..|.+-|
T Consensus 90 GyV~~pnVn~~~EMvdm~~AsRsYEANv~~~~~aK~m~~~aL~igr 135 (135)
T PRK12629 90 GYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTMGR 135 (135)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8884689888999999999999999999999999999999998559
No 54
>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=98.88 E-value=1.3e-09 Score=76.28 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=41.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 876628888999999999999999999999999999999987409
Q gi|254780524|r 436 YSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 436 ~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
+...+|||+.+||++||.++|+||||..+|.++.+|++..|++=|
T Consensus 96 yV~~PnVn~~~EMvdm~~AsRsYeANv~~~~~aK~m~~~aL~IGk 140 (141)
T PRK06802 96 YVFYPDVNVVSEMADMMSASRSFETNVEVLNSVKSMQQSLLKLGE 140 (141)
T ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 884689898999999999999999999999999999999998637
No 55
>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=98.84 E-value=4.1e-09 Score=73.10 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CEEEEEEEEEC
Q ss_conf 91358899999999999998678744202578998------12679998604
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~G------yk~~~~~f~~~ 46 (480)
||+|.+|.++-|||.|++.+|++|+.||||++|+. |+|.++.|..+
T Consensus 1 Ms~~~~~~Ia~Sgl~Aqr~Rm~~ia~NiANa~tt~~~~g~~y~~k~~vf~~~ 52 (141)
T PRK06802 1 MSFNQIYRIAGSAMTAQTIRLNTVASNLANAESPAASAATVYKARSPVFSAV 52 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 9607788899999999999999999988726888989998663433324565
No 56
>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=98.84 E-value=5.2e-09 Score=72.45 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CEEEEEEEEEC
Q ss_conf 91358899999999999998678744202578998-------12679998604
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN-------YVRRDTMTTIS 46 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~G-------yk~~~~~f~~~ 46 (480)
|+|+++|.++-|||.|++.+|++|+.||||++|++ |||..+.|...
T Consensus 3 ~~L~~~~~Ia~sgm~Aq~~Rl~~iAsNlANa~st~~~~~~~py~~k~v~f~~~ 55 (138)
T PRK12782 3 DPLQASLRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYQRKTVTFRAE 55 (138)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHH
T ss_conf 07899999999999999999999998774246678798887640132234131
No 57
>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.83 E-value=5.1e-09 Score=72.50 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CEEEEEEEEEC
Q ss_conf 91358899999999999998678744202578998------12679998604
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS 46 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~G------yk~~~~~f~~~ 46 (480)
||+|++|.++-|||.|++.+|++|+.||||++|+. |++.++.|...
T Consensus 1 Ms~~~~~~Is~Sgl~Aqr~Rm~~ia~NiANa~t~~~~~~~~yr~~~~vf~~~ 52 (135)
T PRK12629 1 MSNLPIFDVAGSALHAQSVRLSTIASNLANADSVAGSAEATYKPIEPIFQAQ 52 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 9636577699998999999999999987746888989998776401125644
No 58
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.80 E-value=7.5e-09 Score=71.49 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCEEEEEEEEE
Q ss_conf 9135889999999999999867874420257899------81267999860
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNK------NYVRRDTMTTI 45 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~------Gyk~~~~~f~~ 45 (480)
||||++|.++-|||.|+..+|++|+.||||++|+ .|||.++.|+.
T Consensus 1 M~~~~~~~Ia~sgl~Aqr~Rl~~ia~NiANa~tt~~~~g~pYrrk~~vf~~ 51 (143)
T PRK12630 1 MKAFDSMRISASGLSAERLRMDTIASNISNASTTRTANGGPYRRKIAVFQE 51 (143)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 972557869999999999999999987653588899999866444112547
No 59
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.75 E-value=1.2e-08 Score=70.22 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CEEEEEEEEE
Q ss_conf 91358899999999999998678744202578998------1267999860
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTI 45 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~G------yk~~~~~f~~ 45 (480)
|||+++|.++-|||.|++.+|+||+.||||++|+. |+|.++.|..
T Consensus 1 M~l~~~~~Ia~sgm~Aqr~Rl~viasNiANa~t~~~~~~~~Y~~k~~vf~~ 51 (140)
T PRK12628 1 MSLNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPDEVYQAKYPVFKS 51 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHH
T ss_conf 960778889999999999999999998863688888999733531301344
No 60
>pfam00460 Flg_bb_rod Flagella basal body rod protein.
Probab=98.71 E-value=6.4e-09 Score=71.89 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 9999999999999867874420257899812
Q gi|254780524|r 7 FNKAQNICNNASQQFASIVRNIENADNKNYV 37 (480)
Q Consensus 7 l~~~~SGL~a~q~~ldvisnNIANvnT~Gyk 37 (480)
|++++|||+++|.+|+||+|||||++|+|||
T Consensus 1 l~~a~sal~a~~~~l~vianNiAN~nT~G~k 31 (31)
T pfam00460 1 LYTAVSALNAQQIALDVIANNIANANTTGYK 31 (31)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9138876508999999998610245576789
No 61
>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion]
Probab=98.69 E-value=2.5e-08 Score=68.25 Aligned_cols=59 Identities=29% Similarity=0.389 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CEEEEEEEEEC---------CCCEEEEEEEEEH
Q ss_conf 91358899999999999998678744202578998------12679998604---------6606998998720
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKN------YVRRDTMTTIS---------PENVTVVTQRSEN 59 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~G------yk~~~~~f~~~---------~~g~~~~~~~~~~ 59 (480)
|+||++|+++-|||.|++.+|+||+.||||+.|++ |+|+++.|+.. +.||++..+....
T Consensus 1 msl~~~~niagS~l~AQ~~RmnvissNiANa~St~~~~g~pYrrk~vvF~~~~~~~~~~~~~~~VkV~~I~eD~ 74 (137)
T COG1558 1 MSLFSIFNIAGSALSAQSLRLNVISSNIANADSTRTPDGGPYRRKQVVFSAELFAPTGATGGAGVKVSKIVEDP 74 (137)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECC
T ss_conf 92165652554777888999899876430354456899984375456765513454445788635898876069
No 62
>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.55 E-value=5.1e-08 Score=66.33 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=40.5
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 9135-88999999999999986787442025789981267999860
Q gi|254780524|r 1 MSLL-AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 1 Msl~-~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
|+|| .++..---+|.+.+.+=+||++||||++|||||++.+.|.+
T Consensus 1 ~~lF~~ti~ll~kaLd~~~~Rq~via~NIANadTPgYK~~dv~Fe~ 46 (135)
T PRK12622 1 MNIFERSVDLSHRYLDVLSLRQSVIADNIANVDTPNFKRSKVTFES 46 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 9527889999999988999999999850102789997524076999
No 63
>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.48 E-value=1e-07 Score=64.54 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=38.0
Q ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 13588-999999999999986787442025789981267999860
Q gi|254780524|r 2 SLLAV-FNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 2 sl~~s-l~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
|||.. +..--..|.+.+.+-.||++||||++|||||++.+.|.+
T Consensus 3 ~~f~~~i~ll~~aLd~~~~Rq~via~NIANadTPgYKardv~Fe~ 47 (136)
T PRK12621 3 SLYEPHVNLVGKVMDMQLQRQNVVMSNIANVRTPGYKPRELEFEK 47 (136)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 247879999999999999999999971320589998744187899
No 64
>PRK12619 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.45 E-value=1.1e-07 Score=64.20 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 3588999999999999986787442025789981267999860
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
+-.+|..--.+|...+.+.+||++||||++|||||++.+.|..
T Consensus 5 ~d~~~gi~~~aL~~r~~Rq~via~NIANadTPgYKakdv~Fe~ 47 (130)
T PRK12619 5 LDSYFGIHAKALIARDQRASVLANNIANVNTPNFKARDVDFNE 47 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 8878667799999999999999862321689998644488999
No 65
>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella. FlgC is part of the basal body. ; GO: 0019861 flagellum.
Probab=98.44 E-value=1.2e-07 Score=63.99 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--------CEEEEEEEEE
Q ss_conf 58899999999999998678744202578998--------1267999860
Q gi|254780524|r 4 LAVFNKAQNICNNASQQFASIVRNIENADNKN--------YVRRDTMTTI 45 (480)
Q Consensus 4 ~~sl~~~~SGL~a~q~~ldvisnNIANvnT~G--------yk~~~~~f~~ 45 (480)
|++|+++-|||.|++.+|+|||.||||++|+. |+|+++.|..
T Consensus 1 ~~~f~v~asaL~AQ~~Rmnv~ssNlANA~s~~~~q~~g~pyrr~~~vF~~ 50 (147)
T TIGR01395 1 LSIFNVSASALSAQRVRMNVVSSNLANADSTRTPQAEGDPYRRRRPVFEA 50 (147)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 95203454467777767766553220333435778888654684015876
No 66
>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.39 E-value=1.8e-07 Score=62.92 Aligned_cols=43 Identities=26% Similarity=0.225 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 3588999999999999986787442025789981267999860
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
+-.+|..--..|...+.+-.||++||||++|||||++.+.|..
T Consensus 5 fd~~~~~~~~aL~~~~~Rq~via~NIANadTPgYKa~dl~Fe~ 47 (132)
T PRK12625 5 FDKALGVHQYTLGIRAQRAEVISSNIANADTPHYKARDVDFSA 47 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 8888617899999999999999871430689998865388999
No 67
>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.39 E-value=2.3e-07 Score=62.28 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 8999999999999986787442025789981267999860
Q gi|254780524|r 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
++..--.+|.+...+=.||++||||++||||||+.+.|.+
T Consensus 10 T~~lL~kaLd~~~~Rq~vIa~NIAN~dTPgYK~~dv~Fe~ 49 (143)
T PRK12624 10 TQDLLERGMNNSIQKRKVISDNIANADVPHFKRSEVIFES 49 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 9999999999999999999860112689997632062999
No 68
>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=98.35 E-value=2.9e-07 Score=61.71 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 3588999999999999986787442025789981267999860
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
+.++|..--.+|.+.+.+..||++||||++|||||++.+.|.+
T Consensus 5 ~~~~~~~l~~aLd~~~~Rq~via~NIANadTPgYKa~dv~Fe~ 47 (137)
T PRK05680 5 FDKALGFQQEALNLRAQRQEVIANNIANADTPGYKARDIDFES 47 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 9999999999999999999999860202689998866277999
No 69
>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.35 E-value=2.6e-07 Score=62.02 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 8999999999999986787442025789981267999860
Q gi|254780524|r 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
.|..--.+|.+.+.+-.||++||||++|||||++.+.|.+
T Consensus 12 tf~ll~~aLd~~~~Rq~vIa~NIANadTPgYKa~dv~Fe~ 51 (131)
T PRK12623 12 TYDLLKKGLDASSYRGKVISNNIANVNTKDYKRHYVTFEE 51 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 8999999999999999999860321689998765586999
No 70
>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion]
Probab=98.33 E-value=3.1e-07 Score=61.54 Aligned_cols=46 Identities=28% Similarity=0.258 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC
Q ss_conf 9135889999999999999867874420257899812679998604
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS 46 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~ 46 (480)
|++..+|...-..|.-.+.+=.||++||||++|||||+..+.|.++
T Consensus 2 ~~~~~~~~l~~~al~~~~~Rq~via~NIANadTP~yKa~dv~Fe~~ 47 (133)
T COG1815 2 MSFDRAFGLLQKALDVRSLRQEVIANNIANADTPGYKAKDVDFESV 47 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 6478999999999889999999998531027999987444758999
No 71
>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.32 E-value=3.6e-07 Score=61.09 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 3588999999999999986787442025789981267999860
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
+-++|..--..|...+.+.+||++||||++|||||++.+.|..
T Consensus 5 fd~~~~~~~~aL~lr~~Rq~viasNIANadTPgYKardv~Fe~ 47 (132)
T PRK12620 5 FTSFLGVHGDALTLREQRMKLIASNLSNVDTPGYKAKDLNFEA 47 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 8878628899999999999999860221689998766587899
No 72
>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=98.22 E-value=7.4e-07 Score=59.19 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 3588999999999999986787442025789981267999860
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
+-++|..--..|...+.+..||++||||++|||||+..+.|..
T Consensus 5 ~d~~~~~~~~aLd~~~~Rq~via~NIANadTPgYKakdl~F~~ 47 (116)
T PRK12685 5 LDAALGVHPQTLDFRVERSKVLASNLANAETPGYKARDLDFKA 47 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 8988657899999999999999860331689998766588999
No 73
>PRK12626 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.16 E-value=8.7e-07 Score=58.74 Aligned_cols=43 Identities=26% Similarity=0.224 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 3588999999999999986787442025789981267999860
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
|-+.|..--..|.-.+.+.+||++||||++|+|||++.+.|.+
T Consensus 5 ld~~~~~~~~AL~lR~~RqevlAsNIANadTPgYKArDldFe~ 47 (162)
T PRK12626 5 LDAEFAFGRQALDVRAYRQELLSSNIANADTPGYRARDVDFAS 47 (162)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf 7877361099999999999999850013789998643587999
No 74
>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=98.13 E-value=1.4e-06 Score=57.46 Aligned_cols=46 Identities=28% Similarity=0.288 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-EEEC
Q ss_conf 913588999999999999986787442025789981267999-8604
Q gi|254780524|r 1 MSLLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTM-TTIS 46 (480)
Q Consensus 1 Msl~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~-f~~~ 46 (480)
|+=+.-|-.+-+=|...+.+-.||++||||++|||||.+.+. |.++
T Consensus 1 m~~l~lf~la~~~~~~~~~Rq~viA~NIANadTPgYkarDv~~Fe~~ 47 (126)
T PRK06003 1 MSPIYLFDLASRQAQWLSVRQATVAGNIANANTPGYRARDVEPFADV 47 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 97115999999998999999999997220279999861225379999
No 75
>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=98.02 E-value=1.9e-06 Score=56.62 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 99999986787442025789981267999860
Q gi|254780524|r 14 CNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 14 L~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
|.--+.+=+||++|||||+|||||++.+.|..
T Consensus 12 Ld~r~~Rq~viAsNIANadTPgYKarDv~Fe~ 43 (135)
T PRK06797 12 MNYLVTKRNTVSSNIANANTPGYKAQDVTFAE 43 (135)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 88999999999861024789998643387999
No 76
>PRK07182 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=98.01 E-value=3e-06 Score=55.46 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 3588999999999999986787442025789981267999860
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
+-.+|..--..|.--..+.+||+.||||++|||||+..+.|..
T Consensus 5 f~~~lg~~~~aL~lR~~RqevlAsNIANaDTPgYKArDidF~~ 47 (148)
T PRK07182 5 FQKALGVHPMAMQLRLTRAELLSANLANVNTPNFQAKDIDFAA 47 (148)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 8867370599999999999999861221689998663788899
No 77
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=97.99 E-value=5.9e-06 Score=53.60 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=44.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998876628888999999999999999999999999999999987409
Q gi|254780524|r 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 431 ~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.|.++.||.|||+..+||++||..+|-|.---|+|+|+|++-+..=++.|
T Consensus 200 rV~sG~LE~SNVnav~~Mt~mI~~aRqfEmqmKmist~d~na~~anqLl~ 249 (251)
T COG4787 200 RVMSGALEGSNVNAVEEMTDMISLARQFEMQMKMISTADDNAGAANQLLR 249 (251)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 65114134565337999999999888889889887542100688987850
No 78
>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=97.95 E-value=3.3e-06 Score=55.19 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 99999999867874420257899812679998
Q gi|254780524|r 12 NICNNASQQFASIVRNIENADNKNYVRRDTMT 43 (480)
Q Consensus 12 SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f 43 (480)
+-|.--+.+-+||++||||++|||||++.+.+
T Consensus 4 ~~m~~~~~Rq~via~NIANadTPgYkarDl~~ 35 (126)
T PRK06004 4 TRMQWHQERQKVLAENVANSDTPGFRPRDLVE 35 (126)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88879999999999724406899988323652
No 79
>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional
Probab=97.68 E-value=3.5e-05 Score=48.88 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-EEE
Q ss_conf 899999999999998678744202578998126799-986
Q gi|254780524|r 6 VFNKAQNICNNASQQFASIVRNIENADNKNYVRRDT-MTT 44 (480)
Q Consensus 6 sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~-~f~ 44 (480)
-|.-+-.=|.-.+.+-.||++||||++|||||++.+ .|.
T Consensus 7 lf~l~~~~~~~la~Rq~ViA~NIANADTPgYkarDl~~F~ 46 (128)
T PRK12627 7 IFRMASAMARHAGERQAVIAQNVANADTPGYRARDLADFA 46 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHH
T ss_conf 9999999999999999999974103799998500004199
No 80
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=97.56 E-value=2.6e-06 Score=55.78 Aligned_cols=104 Identities=11% Similarity=0.074 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-------CCCEEEEEEEEEHHHHHHHHHHHHHHHHH
Q ss_conf 35889999999999999867874420257899812679998604-------66069989987206887888775444556
Q gi|254780524|r 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTIS-------PENVTVVTQRSENKNMFDKVLHAHSSAIG 75 (480)
Q Consensus 3 l~~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (480)
|=.++|++++|-+-.=..+.+++||+||+.|+|||++-..+-++ ++-+.+ ...+.+..+..+.+..+...++
T Consensus 1 MD~aiy~aM~aA~Q~l~~qa~~ANNLAN~STtGFraql~a~rav~v~g~~~ptrt~~-~~s~pg~d~spG~l~~TgR~LD 79 (251)
T COG4787 1 MDHAIYTAMGAASQLLEQQAVTANNLANASTTGFRAQLNAARAVQVHGDSLPTRTFV-MASTPGTDMSPGSLDYTGRPLD 79 (251)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEE-ECCCCCCCCCCCCCCCCCCCCE
T ss_conf 923789887888888998887751421356631789998863012468875201035-4146765678861013688530
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 78878789988865126777776401136677766876
Q gi|254780524|r 76 QQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLES 113 (480)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (480)
.++.+.+++.+.+. ++..-|+|.+++..+-.+
T Consensus 80 vaiq~DGwlaVq~~------dG~EaYTRnG~~qI~a~g 111 (251)
T COG4787 80 VAIQGDGWLAVQDA------DGSEAYTRNGNIQIDATG 111 (251)
T ss_pred EEECCCCEEEEECC------CCCCHHEECCCEEECCCC
T ss_conf 79736856999868------875011115746787654
No 81
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=96.37 E-value=0.056 Score=29.10 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 410 ~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.+|..-+............-..+.......-.||++||+++|...|..+||..+++.-++++-+-.+.+.|
T Consensus 290 ~lGa~qnrl~~~~~~l~~~~~nl~~~~s~i~D~D~aee~t~l~~~q~~~Qas~~~laqan~~s~~~l~ll~ 360 (360)
T COG1344 290 ELGAVQNRLESAINNLSNQSDNLTAAESRIVDVDMAEESTELTKLQILQQASLQALAQANQLSLLVLSLLR 360 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87389999999998898899999998864007769999999999999999999999999860288897359
No 82
>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional
Probab=96.14 E-value=0.015 Score=32.59 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=36.1
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 662888899999999999999999999999999999998
Q gi|254780524|r 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 (480)
Q Consensus 438 E~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Li 476 (480)
..-+|||++|++.|-..|..||++.++++--=.||.+.|
T Consensus 87 dGN~V~le~Em~~~aen~~~Y~~~~~~~~~~~~~lrtAi 125 (128)
T PRK12627 87 NGNSVSLEEEMLRSAEAKRQHDRALAIYKSSMSLLRTSL 125 (128)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988355999999999999999999999999999999986
No 83
>PRK12804 flagellin; Provisional
Probab=96.12 E-value=0.075 Score=28.29 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 423 MKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 423 ~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
..-+.....+....-.+--||+++|.++|-..|=-|||...++.-++++-|.+|.|.|
T Consensus 250 ~~l~~~~~nl~~~~s~i~DaD~A~e~~~l~~~qi~~Qaa~a~laqAN~~~q~~L~Ll~ 307 (307)
T PRK12804 250 NNLGASSENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 307 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8899999999998743560069999999999999999999999998266899998519
No 84
>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=95.95 E-value=0.021 Score=31.68 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=34.8
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28888999999999999999999999999999999987
Q gi|254780524|r 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 (480)
Q Consensus 440 SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin 477 (480)
-+|||++||++|-..|+-|+++..+++..=.||-..|-
T Consensus 88 N~V~le~Em~~~aen~~~Y~~~~~l~~~~~~ml~~Ai~ 125 (126)
T PRK06003 88 NSVSLEQEMMKAGEINRDYSLNTAIVKSFHRMMLMTVK 125 (126)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 94579999999999999999999999999999999864
No 85
>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=95.63 E-value=0.034 Score=30.43 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=35.8
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 628888999999999999999999999999999999987
Q gi|254780524|r 439 TVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 (480)
Q Consensus 439 ~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin 477 (480)
.=+|||++|+++|...|.-||+..++++--=.||.+.|.
T Consensus 86 GN~Vdle~Em~~~aen~~~Y~~~~~~~~~~~~~l~~AIg 124 (126)
T PRK06004 86 GNAVNLEDEMLKVSDNQMDYAAATSLYQKSLGLLKTAIG 124 (126)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 981469999999999999999999999999999999975
No 86
>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=95.38 E-value=0.051 Score=29.33 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=36.9
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 662888899999999999999999999999999999998740
Q gi|254780524|r 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 438 E~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
-.-||||++|+++|...|--|||..+.|+--=.+|...|..=
T Consensus 95 DGN~Vdle~Em~~~a~N~l~Y~a~~~~l~~~~~~l~~aI~gG 136 (137)
T PRK05680 95 DGNTVDMDVERTEFAKNSLMYQALLTALNGKFKGLMSVLQGG 136 (137)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 998608799999999999999999999999999999998657
No 87
>PRK12802 flagellin; Provisional
Probab=95.32 E-value=0.15 Score=26.37 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 410 ~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.+|....-.....+........+....-..-.||+++|.++|-..|=-|||.-.++.-++++=|.+|.|.|
T Consensus 212 ~~Ga~~nrle~~~~~l~~~~~nl~~~~s~i~DaD~A~e~~~l~~~qi~~Qaa~a~laqANq~~q~vl~Llq 282 (282)
T PRK12802 212 DLGAAQNRLQSTISNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 87499889999998899999999998766660059999999999999999999999999676899998509
No 88
>PRK12807 flagellin; Provisional
Probab=95.14 E-value=0.18 Score=26.02 Aligned_cols=69 Identities=7% Similarity=0.011 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 412 EKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 412 ~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
|...+......+........+....-.+--+|+++|.++|...|=-|||...++.-++++=|.+|.|.|
T Consensus 219 GA~~nrle~~~~~l~~~~~~l~~~~S~i~DaD~A~e~~~l~~~qil~Qaa~a~lsqAN~~~q~vL~Llq 287 (287)
T PRK12807 219 GATLNRLDRNVENLNNQATNMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999998999999999999887771049999999999999999999999998467899998509
No 89
>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion]
Probab=94.99 E-value=0.07 Score=28.49 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=35.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76628888999999999999999999999999999999987
Q gi|254780524|r 437 SNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 (480)
Q Consensus 437 lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin 477 (480)
+..=||||+.|+++|-.-|+-||++..++.--=.||...|.
T Consensus 91 ~dGNtVdld~E~~~~~kN~~~Yq~~~~~l~~~~~~~~~vl~ 131 (133)
T COG1815 91 NDGNTVDLDREMTEFAKNQLMYQALLSFLKSQIKMLNSVLK 131 (133)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88870438999999999999999999999999999999971
No 90
>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional
Probab=94.78 E-value=0.08 Score=28.13 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=35.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6628888999999999999999999999999999999987
Q gi|254780524|r 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLE 477 (480)
Q Consensus 438 E~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin 477 (480)
..=||||++|++.|..-|=-|||-.+.+.--=.+|...|+
T Consensus 92 DGNnVDid~Em~~laeN~l~Y~a~~~~l~~k~~~lk~aI~ 131 (131)
T PRK12623 92 DGNNVDIDNEMVNQAANTLMYNALITQLNNRLATTRYIIN 131 (131)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9986779999999999999999999999989999998629
No 91
>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional
Probab=94.52 E-value=0.11 Score=27.21 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=33.3
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2888899999999999999999999999999999998
Q gi|254780524|r 440 VGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 (480)
Q Consensus 440 SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Li 476 (480)
=||||+.|++.|..-|=-|||-+++|+--=+.|...|
T Consensus 98 NnVDid~Em~~la~N~l~Y~al~~~l~~~f~~l~~vI 134 (135)
T PRK12622 98 NNVDIDSEMKALVQNQMMYHLFTNIQAHHFKSVNIVI 134 (135)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8758899999999999999999999998999999985
No 92
>TIGR01396 FlgB flagellar basal-body rod protein FlgB; InterPro: IPR006300 Many bacterial species swim actively by means of flagella. The flagella organelle is made of three parts: the basal body, the hook and the filament. The basal body consists of four rings (L,P,S, and M) mounted on a central rod . In Salmonella typhimurium and related organisms the rod has been shown to consist of four different, yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB, flgC, and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. These sequences represent FlgB, one of several components of bacterial flagella. FlgB is part of the basal body.; GO: 0019861 flagellum.
Probab=94.39 E-value=0.024 Score=31.31 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 88999999999999986787442025789981267999860
Q gi|254780524|r 5 AVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTI 45 (480)
Q Consensus 5 ~sl~~~~SGL~a~q~~ldvisnNIANvnT~Gyk~~~~~f~~ 45 (480)
.++..-..+|.....+-+++.+||||+.|+|||+..+.|..
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~~ 43 (134)
T TIGR01396 3 RALGLLQKALDLRSLRQEVLANNIANADTPGYKAKDLSFEA 43 (134)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHH
T ss_conf 10446777765777766666543100356653101102788
No 93
>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional
Probab=94.20 E-value=0.14 Score=26.71 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=36.4
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66288889999999999999999999999999999999874
Q gi|254780524|r 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 (480)
Q Consensus 438 E~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~ 478 (480)
-.=||||+.|+++|-.-|=-|||-.+.|.--=.+|...|.|
T Consensus 102 DGNnVDid~Em~~la~N~l~Y~al~~~l~~~~~~lr~vIk~ 142 (143)
T PRK12624 102 DGNNVDVEKEVVEASNSQMQYMLMIERLNQNYRLLKQVMRM 142 (143)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98726899999999999999999999999789999999736
No 94
>PRK08869 flagellin; Reviewed
Probab=93.44 E-value=0.41 Score=23.75 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 424 KSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 424 ~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
..+.....+....-.+--||+++|.++|-+.|=-.||...++.-++++-|-+|.|.|
T Consensus 321 ~l~~~~~n~~aa~S~I~DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~Llq 377 (377)
T PRK08869 321 NLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 377 (377)
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_conf 999999999987423351319999999999999999999999997317679998409
No 95
>PRK08412 flgL flagellar hook-associated protein FlgL; Validated
Probab=93.44 E-value=0.41 Score=23.75 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7887664211123223456799999998876628888999999999999999999999999999
Q gi|254780524|r 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 (480)
Q Consensus 408 ~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Dem 471 (480)
.+.++.+.+--....+-.+...-.+.+...+.-..||+|||.++.+.|-+|||.=+.+.-..+|
T Consensus 708 ~a~iGA~~N~Le~ti~rle~l~vNvts~~S~i~D~D~AE~mm~ft~l~~~yQAmLas~~kI~Ql 771 (777)
T PRK08412 708 IAKNGAHGKAFENIIRRNEVLKVQVQSIRSEVTGTDMAETYNKFSNLTNNYNAVLASTNKINQL 771 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7642345646888887666666667657652226079999999999999999999985311343
No 96
>PRK06819 flagellin; Validated
Probab=92.60 E-value=0.54 Score=22.99 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 426 ~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
......+....--+--+|+++|.++|-+.|=-.||...++.-++++=|-+|.|.|
T Consensus 317 ~~~~~nl~aa~s~I~DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~Llq 371 (371)
T PRK06819 317 NNTVTNLTSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLLR 371 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999999997532773039999999999999999999999997707789998509
No 97
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=91.48 E-value=0.73 Score=22.19 Aligned_cols=62 Identities=5% Similarity=-0.026 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87664211123223456799999998876628888999999999999999999999999999
Q gi|254780524|r 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 (480)
Q Consensus 410 ~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Dem 471 (480)
.+|....-........+.....+....-+.-.||++||+++|-+.|-.|||.-++..-..+|
T Consensus 336 ~lGa~~nrle~~~~~l~~~~~~l~~~~S~i~DaD~ae~~t~l~~~q~~~qAa~~~~aqi~q~ 397 (403)
T PRK08870 336 SVGARLNELESYEAVHEDNKLVNTSALSSLEDLDYASAISEFEKQQAALQAAQQAFSKVQSL 397 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98599999999998888899999998765125479999999999999999999999988345
No 98
>PRK07701 flgL flagellar hook-associated protein FlgL; Validated
Probab=90.56 E-value=0.89 Score=21.65 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 410 ~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.+|..-+.........+...-.+.......-.||+++|.++|-..|-.|||.-++..-..++ .|++.+|
T Consensus 233 ~~Ga~~nrle~~~~~~~~~~~~l~~~~s~i~D~D~a~a~~~l~~~q~~~qAa~~~~a~i~q~--SL~dylR 301 (301)
T PRK07701 233 ELGARSNRLELIENRLSDQEINATKLLSDNEDVDLAEVITDLKTQENVYRAALAVGARIIQP--SLVDFLR 301 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHCC
T ss_conf 86189999999998899999999999887755459999999999999999999999988356--0988709
No 99
>PRK12805 flagellin; Provisional
Probab=89.52 E-value=1.1 Score=21.13 Aligned_cols=54 Identities=15% Similarity=0.051 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 679999999887662888899999999999999999999999999999998740
Q gi|254780524|r 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 426 ~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
......+....-.+--||+++|.++|...|=-+||..-++.-++++=|.+|.|+
T Consensus 232 ~~~~~nl~~~~S~i~DaD~A~e~~~l~k~qil~Qaa~amlaQAN~~pq~vL~Ll 285 (287)
T PRK12805 232 NNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285 (287)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 999999999875377221999999999999999999999999832779999875
No 100
>PRK07192 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=88.64 E-value=1.3 Score=20.75 Aligned_cols=62 Identities=8% Similarity=0.026 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88766421112322345679999999887662888899999999999999999999999999
Q gi|254780524|r 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDK 470 (480)
Q Consensus 409 ~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~De 470 (480)
+.+|..-+......+..+...-.+.....+...||++|+.++|-..|-.|||.-++..-..+
T Consensus 237 a~iGa~~nrle~~~~~~~~~~~~l~~~~s~i~d~D~a~a~t~l~~~q~~~qAs~~~~a~i~~ 298 (305)
T PRK07192 237 TEVGSRQKELDLLQKNHEDMKLQNAKILSDLQDLDYAEAYTDLSNQMAALEATQKTFVKVNS 298 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99859999999999889999999999987754557999999999999999999999998816
No 101
>pfam00700 Flagellin_C Bacterial flagellin C-terminal helical region. Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.
Probab=88.45 E-value=1.3 Score=20.67 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 234567999999988766288889999999999999999999999999999999874
Q gi|254780524|r 422 HMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 (480)
Q Consensus 422 ~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~ 478 (480)
...-+.....+......+-.||++||.++|-..|--|||...++.=+++| .|+|.
T Consensus 29 ~~~l~~~~~n~~~a~s~i~D~D~Aee~t~l~~~qil~qas~a~~aqanql--slln~ 83 (84)
T pfam00700 29 NTNLKNQSDNLKAAISRIEDVDPAEASTRVTKLQILLQASYALTAQANQL--SLLNL 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_conf 98899999999999988666509999999999999999999999998678--88864
No 102
>PRK12803 flagellin; Provisional
Probab=87.96 E-value=1.4 Score=20.48 Aligned_cols=55 Identities=11% Similarity=0.156 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 426 ~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
......+....--+--+|+++|+++|.+.|==.||..-++.-++++=|.+|.|.|
T Consensus 281 ~~~~~Nl~aa~SrI~DaD~A~E~~~ltk~qil~Qa~~amLaQAN~~pq~vL~LLq 335 (335)
T PRK12803 281 EYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLSLLR 335 (335)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 9999999997531563059999999999999999999999997617689998409
No 103
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=85.11 E-value=2 Score=19.54 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6799999998876628888999999999999999999999999999
Q gi|254780524|r 426 QVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKM 471 (480)
Q Consensus 426 ~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Dem 471 (480)
+..-..+......+--+|++||+++|-+.|-.|||.-++..-+.+|
T Consensus 472 ~~~~~n~~~a~S~i~D~D~Ae~~t~lt~~qil~qAa~s~~aqi~ql 517 (523)
T PRK12717 472 ESLSLANTSTQSSIRDSDPAEATTRLTLQQTMLEASQQAFVKISQL 517 (523)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999998887653039999999999999999999999998574
No 104
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=84.36 E-value=2.1 Score=19.34 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 887664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 409 GWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 409 ~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
+.+|..-..........+...-.+.....+...||++|..++|-+.|-+|||.-++..-..++ .|++.+|
T Consensus 248 a~iG~r~n~le~~~~~~~~~~l~~~~~~S~~eD~D~aeaisel~~~q~alqAa~~~faki~~l--SLfd~lR 317 (317)
T PRK08027 248 AELGTQLNELESLDSLGSDRALGQKQQMSDLVDVDWNSAISSYVMQQAALQASYKTFTDMQGM--SLFQLNR 317 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHCC
T ss_conf 999899999999997667799899999876136589999999999999999999999998347--3987609
No 105
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=82.77 E-value=2.5 Score=18.94 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 876642111232234567999999988766288889999999999999999999999999
Q gi|254780524|r 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTD 469 (480)
Q Consensus 410 ~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~D 469 (480)
.+|.............+...-.+.....+...||++|+.++|-..|-+|||.-++..-.-
T Consensus 220 ~vGar~nrle~~~~~~~~~~~~l~~~~S~ieD~D~Aeai~~l~~~~~~lqAal~~~aki~ 279 (287)
T PRK08073 220 EVGSTMNTVETFKTILSEQNLALQENRKEIEDVDLAVAISDLAYINATYEATLKAVSTMS 279 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 998999999999988888999999988775554699999999999999999999999870
No 106
>PRK06663 flagellar hook-associated protein FlgL; Validated
Probab=80.13 E-value=3.1 Score=18.36 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 410 ~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.+|..-.-.....+..+...-.+.....+..-+|+++|+++|-+.|-.|||.=++..-. +-..|++-+|
T Consensus 352 ~iGar~nrle~~~~~~~~~~~~l~~~~S~i~DaD~a~~it~l~~~~~~~qAa~~~~a~i--~~~SLfdyLr 420 (420)
T PRK06663 352 DLGAKENRLERSYERISKEIMDMTEDMSKYTDLDVTKAITNLKMLELAHQVSLGVSAKI--MKTTLLDFLR 420 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHCC
T ss_conf 98799999999999888899999998863305239999999999999999999999987--0662887609
No 107
>PRK12687 flagellin; Reviewed
Probab=79.17 E-value=3.3 Score=18.17 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999998876628888999999999999999999999999999999987409
Q gi|254780524|r 428 VFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 428 ~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
....+..+.-.+--+|+++|.++|-..|===|+...++.-++++=|.+|.|.|
T Consensus 259 ~~~nl~aa~grI~DADmA~Esa~l~k~QilqQag~amLaqANq~pQ~vLsLlr 311 (311)
T PRK12687 259 LRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311 (311)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_conf 99999986768756659999999999999999999999998457599998619
No 108
>PRK12808 flagellin; Provisional
Probab=76.00 E-value=4 Score=17.61 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999998876628888999999999999999999999999999999987409
Q gi|254780524|r 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 430 g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
..+.....-+--+|+++|+++|=+.|===||..-++.-++++=|.+|.|.|
T Consensus 410 eN~~aa~SrI~DaDmA~E~a~ltk~qILqQAgtamLAQANq~pq~vL~LLq 460 (460)
T PRK12808 410 SSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 460 (460)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 999997667660659999999999999999999999996517478998419
No 109
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional
Probab=75.62 E-value=4.1 Score=17.55 Aligned_cols=69 Identities=10% Similarity=-0.020 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87664211123223456799999998876628888999999999999999999999999999999987409
Q gi|254780524|r 410 WLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 410 ~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.++..-..........+..--.......+..-+|++|..++|-.-|.++||.-|...-...| .|.||.|
T Consensus 442 ~vGaRlN~ld~~~~~~~~~~l~~~~~lS~leDlD~aeAis~l~~qq~~LQAaQqsF~ki~~L--SLFn~~r 510 (510)
T PRK12718 442 SVGARLNELEALGNTGAQKGLSYVKQLSDLEDVNIYQATSDLLLRQVALQAASLALQRIQGN--SLFSMGR 510 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCC
T ss_conf 88788889999986547678799998875023689999999999999999999999998656--5111469
No 110
>PRK13588 flagellin B; Provisional
Probab=74.35 E-value=4.5 Score=17.35 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9998876628888999999999999999999999999999999987409
Q gi|254780524|r 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 432 i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
+.....-+--+|+++|+++|=+.|===||..-++.=++++=|-+|+|.|
T Consensus 466 l~aA~SrI~DaDmA~Ema~lTk~qIL~QAg~amLAQANq~pQ~VL~LLq 514 (514)
T PRK13588 466 VKAAESQIRDVDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
T ss_conf 9999888985219999999999999999999999998256688998429
No 111
>PRK08026 flagellin; Validated
Probab=72.20 E-value=5 Score=17.03 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9998876628888999999999999999999999999999999987409
Q gi|254780524|r 432 ISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 432 i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
+.....-+--+|+++|+++|=+.|===||..-++.=++++=|-+|+|.|
T Consensus 517 ltaA~SrI~DaD~A~E~a~ltk~qILqQAgtamLAQANq~pQ~VL~LLq 565 (566)
T PRK08026 517 LSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 565 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999988985409999999999999999999999997127789999758
No 112
>PRK13589 flagellin; Provisional
Probab=56.84 E-value=9.8 Score=15.22 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998876628888999999999999999999999999999999987409
Q gi|254780524|r 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 431 ~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.+.....-+--+|+++|+++|=+.|===||..=++-=++++=|-+|+|.|
T Consensus 524 NltaAeSrIrDaD~A~Ema~~TK~QILqQAgtamLAQANq~pQ~VL~LLq 573 (573)
T PRK13589 524 NVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ 573 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
T ss_conf 89999998973529999999999999999999999987467488997339
No 113
>PRK08411 flagellin; Reviewed
Probab=52.94 E-value=11 Score=14.83 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=43.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998876628888999999999999999999999999999999987409
Q gi|254780524|r 431 HISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGVK 480 (480)
Q Consensus 431 ~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~R 480 (480)
.+.....-+--+|+++|+++|=+.|===||..-++-=++++=|-+|+|.|
T Consensus 524 NltaA~SrIrDaDfA~Ema~lTK~qILqQAgtamLAQANq~pQ~VL~LLq 573 (573)
T PRK08411 524 NVKAAESQIRDVDFASESANYSKANILAQSGSYAMAQANSVQQNVLRLLQ 573 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
T ss_conf 89999998973529999999989999999999999987367488997339
No 114
>PRK12806 flagellin; Provisional
Probab=50.28 E-value=13 Score=14.57 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999887662888899999999999999999999999999999998740
Q gi|254780524|r 429 FNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 429 ~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
...+.....-+--+|+++|+++|=+.|===||..-++.=++++-|.+|+|.
T Consensus 423 ~eN~~aA~SrI~DaDmA~E~s~ltk~qILqQA~~amLAQANq~pQ~VL~LL 473 (475)
T PRK12806 423 SDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSLL 473 (475)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 999999754645022999999999999999999999999650768999860
No 115
>pfam00393 6PGD 6-phosphogluconate dehydrogenase, C-terminal domain. This family represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each.
Probab=41.84 E-value=15 Score=14.09 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=12.8
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 87662888899999999999999
Q gi|254780524|r 436 YSNTVGVNLQEELSFLIKVEQSY 458 (480)
Q Consensus 436 ~lE~SNVDL~eE~tnLI~~QraY 458 (480)
...+..-.+. .|||++||-|
T Consensus 251 ~d~~~~~~lp---anLIQAQRDy 270 (290)
T pfam00393 251 YDSYRTERLP---ANLIQAQRDY 270 (290)
T ss_pred HHHHHCCCCC---HHHHHHHHHH
T ss_conf 9985247883---8999999987
No 116
>PRK08913 flgL flagellar hook-associated protein FlgL; Validated
Probab=39.95 E-value=18 Score=13.58 Aligned_cols=59 Identities=10% Similarity=-0.018 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78876642111232234567999999988766288889999999999999999999999
Q gi|254780524|r 408 IGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIM 466 (480)
Q Consensus 408 ~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvIt 466 (480)
.+.+|...+......+..+...-.+.....+...||++|-.++|-..|-+|||.-++..
T Consensus 233 ~a~lG~~~~rle~~~~~~~~~~~~l~~~~s~ledvD~aea~t~l~~~~~~lqAs~~~~a 291 (302)
T PRK08913 233 QSRLSNAASRITAASSLQTEYKSFAETLLGDLTDVDVAAVTAQLSTYQAQLTASYSAIS 291 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99980999999999987899999999998863575999999999999999999999999
No 117
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=36.79 E-value=20 Score=13.30 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=12.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 87662888899999999999999
Q gi|254780524|r 436 YSNTVGVNLQEELSFLIKVEQSY 458 (480)
Q Consensus 436 ~lE~SNVDL~eE~tnLI~~QraY 458 (480)
...+..-.+. +|||++||-|
T Consensus 417 ~d~~r~~~lp---anLIQAQRDy 436 (459)
T PRK09287 417 YDSYRTARLP---ANLIQAQRDY 436 (459)
T ss_pred HHHHHCCCCH---HHHHHHHHHH
T ss_conf 9986168875---9999999986
No 118
>PRK00253 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=33.78 E-value=23 Score=12.98 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=32.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66288889999999999999999999999999999999874
Q gi|254780524|r 438 NTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEG 478 (480)
Q Consensus 438 E~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~ 478 (480)
-.++|||.+=++.+-++.=+||+--+|=.=.=+=.|||++|
T Consensus 63 G~~~v~l~~vMIa~qkA~lsfq~~~qVRNK~v~AYqEIM~M 103 (105)
T PRK00253 63 GDPGVDLNDVMIALQKASVSFQAGIQVRNKLVAAYQEIMNM 103 (105)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99988799999999998889999999999999999999828
No 119
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=31.89 E-value=24 Score=12.78 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=6.9
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780524|r 449 SFLIKVEQSY 458 (480)
Q Consensus 449 tnLI~~QraY 458 (480)
.|||++||-|
T Consensus 445 anLIQAQRD~ 454 (474)
T PTZ00142 445 ANLVQAQRDY 454 (474)
T ss_pred HHHHHHHHHH
T ss_conf 9999999874
No 120
>PRK12584 flagellin A; Reviewed
Probab=27.58 E-value=29 Score=12.33 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999887662888899999999999999999999999999999998740
Q gi|254780524|r 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLLEGV 479 (480)
Q Consensus 430 g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Lin~~ 479 (480)
..+.....-+--+|+++|+++|=+.|===||..=++-=++++=|-+|+|.
T Consensus 460 eNltaA~SrI~DaD~A~Ema~~tk~qIL~QAgtamLAQANq~pQ~VL~LL 509 (510)
T PRK12584 460 VNVKAAESQIRDVDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
T ss_conf 99999988898530899999999999999999999998617668898622
No 121
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III; InterPro: IPR004655 Beta-ketoacyl-acyl carrier protein synthase III (FabH), in general, initiates elongation in type II fatty acid synthase systems found in bacteria and plants. It is responsible for producing the multitude of fatty acid structures found in bacterial membranes . The two members of this subfamily from Bacillus subtilis differ from each other, and from FabH from Escherichia coli, in acyl group specificity. Active site residues include Cys112, His244 and Asn274 of Escherichia coli FabH. Cys-112 is the site of acyl group attachment. ; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process.
Probab=27.39 E-value=29 Score=12.31 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780524|r 459 NISNKLIMFTDKML 472 (480)
Q Consensus 459 qANakvItT~Deml 472 (480)
|||.|+|+..-+-|
T Consensus 256 QAN~RIi~a~ak~L 269 (329)
T TIGR00747 256 QANIRIIEALAKRL 269 (329)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 11168999999970
No 122
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=26.74 E-value=30 Score=12.23 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=14.0
Q ss_pred HHHHHHHHHC-CCCCCCCE
Q ss_conf 8678744202-57899812
Q gi|254780524|r 20 QFASIVRNIE-NADNKNYV 37 (480)
Q Consensus 20 ~ldvisnNIA-NvnT~Gyk 37 (480)
.|.|.|.|+| |+.--||+
T Consensus 10 GLaVMG~NLaLNi~~~G~~ 28 (473)
T COG0362 10 GLAVMGSNLALNIADHGYT 28 (473)
T ss_pred EHHHHHHHHHHHHHHCCCE
T ss_conf 3103027788888744966
No 123
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket . This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=26.10 E-value=31 Score=12.16 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=14.3
Q ss_pred HHHHHHHHHC-CCCCCCCE
Q ss_conf 8678744202-57899812
Q gi|254780524|r 20 QFASIVRNIE-NADNKNYV 37 (480)
Q Consensus 20 ~ldvisnNIA-NvnT~Gyk 37 (480)
.|.|-|.||| |+.--||+
T Consensus 6 GLAVMG~NLaLN~~d~GF~ 24 (480)
T TIGR00873 6 GLAVMGSNLALNMADHGFT 24 (480)
T ss_pred EECHHHHHHHHHHHHCCCC
T ss_conf 6041357899988746982
No 124
>pfam04782 DUF632 Protein of unknown function (DUF632). This plant protein may be a leucine zipper, but there is no experimental evidence for this.
Probab=23.36 E-value=35 Score=11.84 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999
Q gi|254780524|r 444 LQEELSFLIKVEQSYN 459 (480)
Q Consensus 444 L~eE~tnLI~~QraYq 459 (480)
--.-|.++|.+||.|=
T Consensus 228 W~~~F~~~i~~Qr~Yv 243 (311)
T pfam04782 228 WHSSFSNWIKAQRSYV 243 (311)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 125
>pfam12177 Proho_convert Prohormone convertase enzyme. This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam01483, pfam00082. There are two completely conserved residues (Y and D) that may be functionally important. This protein is the C terminal domain of a prohormone convertase enzyme which targets hormones in dense core secretory granules. This C terminal tail domain is the domain responsible for targeting these dense core secretory granules. The domain adopts an alpha helical structure.
Probab=20.59 E-value=40 Score=11.49 Aligned_cols=11 Identities=45% Similarity=0.773 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999998740
Q gi|254780524|r 469 DKMLQTLLEGV 479 (480)
Q Consensus 469 Demlq~Lin~~ 479 (480)
|.+||.|++|+
T Consensus 28 DrLlQAL~~il 38 (41)
T pfam12177 28 DRLLQALLDIL 38 (41)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999987
Done!