HHsearch alignment of GI: 254780524 and MMDB domain: 2d4y_A_1-268_356-463
>2d4y_A (A:1-268,A:356-463) HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=100.00 E-value=3e-33 Score=221.62 Aligned_cols=371 Identities=15% Similarity=0.162 Sum_probs=290.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 06887888775444556788787899888651267777764011366777668764138675300112210122222210
Q gi|254780524|r 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 (480)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (480)
.|.|+..+++...+..++...........+.+|..+ ..++...+..|+..|..+..+|.+...+..++..+..++..+
T Consensus 3 ~D~fl~~q~r~~~s~~~~~~~~~~~l~~le~~~~e~--~~gl~~~l~~ff~a~~~ls~~P~~~~~R~~vl~~a~~L~~~~ 80 (376)
T 2d4y_A 3 YDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADK--SSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQF 80 (376)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--TTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 579999999999877778999999999999985899--877899999999999999868798899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCE
Q ss_conf 00224565665432000111278788754343210112223456--6765210012100001010020124787337711
Q gi|254780524|r 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 (480)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~--~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~ 216 (480)
+..+..+..++......+...|.++|.++.+++.+|..|..... .+..+++++|+||.+++++++++++.+....++.
T Consensus 81 n~~~~~L~~l~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndLlDqRD~ll~eLS~~i~i~v~~~~~G~ 160 (376)
T 2d4y_A 81 KTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGT 160 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHSCEEEEEETTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 99999999999999999999999999999999999999999861468999067789999999998766070478627885
Q ss_pred EEEECCCCEEEECCCCCE-EEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
Q ss_conf 478706970610344412-5763045666766432167336556656776667653111011102331367787887655
Q gi|254780524|r 217 MVVYTSDGTTLFETVPRD-INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMAR 295 (480)
Q Consensus 217 ~~v~~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (480)
+.|+..+|.+|++..... +..... ...........................+|+++|+..+|+..++.++..++.++.
T Consensus 161 v~V~~~~G~~LV~g~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~l~gll~~rd~~l~~~~~~Ld~lA~ 239 (376)
T 2d4y_A 161 YNLTMANGYTLVQGSTARQLAAVPS-SADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLAL 239 (376)
T ss_dssp EEEEETTCCEEEETTEECCEEEEEC-SSCTTCEEEEEEETTTEEEECCGGGGCSHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred EEEEECCCEEECCCCCCCEEEEECC-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1267279715035775320465204-677775226773267775445534467521002678864202456778999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 43100123455777777654321122345666654332222223333346662100024566665555666544310245
Q gi|254780524|r 296 VLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNPQYRSNPSFLRDGGSVSKKFLWNVKNLAGYPDLI 375 (480)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (480)
.+++.++..|..|.+..+..+..++.......... ....+..++.... ......+.....++....
T Consensus 240 ~la~~~N~~~~~G~~~~g~~g~~~f~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~gDn~na 305 (376)
T 2d4y_A 240 AFADAFNAQHTKGYDADGNKGKDFFSIGSAIVDMN---------VKVTNEAEIAMAS-----ESKLDPDVDTGDSDNRNG 305 (376)
T ss_dssp HHHHHHHHHHTTSBCTTSCBCCCCEECCCTTTTCE---------ECCCCGGGCCCBS-----SCCC--------CCCHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH---------HHCCCHHHHHHCC-----CCCCCCCCCCCCCCHHHH
T ss_conf 99998887540256777877865312355565303---------4227878764305-----565578766788867999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 676642011112333345677652899998777887664211123223456799999998876628888999999999
Q gi|254780524|r 376 NHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 (480)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~ 453 (480)
..... .. ......++.+|.++|..+++.+++.++.+....+..+..+.++...+.+.|+|+|+||++|||+
T Consensus 306 ~~l~~------lq-~~~~~~g~~T~~~~y~~~v~~vG~~~~~a~~~~~~~~~~~~~~~~~r~svSGVnlDEE~anlik 376 (376)
T 2d4y_A 306 QALLD------LQ-NSNVVGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 376 (376)
T ss_dssp HHHHG------GG-GSCCBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHH------CH-HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 99984------31-2357689863999999999999999999999999999999999999984206179999998549