HHsearch results for GI: 254780524 and protein with PDBid: 2d4y_A
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=100.00 E-value=3.3e-32 Score=214.27 Aligned_cols=390 Identities=14% Similarity=0.161 Sum_probs=273.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 06887888775444556788787899888651267777764011366777668764138675300112210122222210
Q gi|254780524|r 59 NKNMFDKVLHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNF 138 (480)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (480)
.|.|++.+++...+..++...........+.+|..+ ..++...+..|+..|+.+..+|.+...+..++..+..++..+
T Consensus 3 ~D~fL~~q~r~~~s~~~~~~~~~~~l~~le~~~~e~--~~gl~~~l~~ff~a~~~ls~~P~~~~~r~~v~~~a~~l~~~~ 80 (463)
T 2d4y_A 3 YDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADK--SSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQF 80 (463)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--TTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 579999999999877778999999999999985899--876899999999999999868798899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCE
Q ss_conf 00224565665432000111278788754343210112223456--6765210012100001010020124787337711
Q gi|254780524|r 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTA--SKHDAHDFLDQRDVLLQKISEIIGISTIVRNNND 216 (480)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~n~~~~~~~~--~~~~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~ 216 (480)
+..+..++.++......+...|.++|.++.++..+|..|..... .+..+++++|+||.+++++|+++++++..+.++.
T Consensus 81 ~~~~~~l~~l~~~~~~~i~~~v~~iN~ll~qIa~lN~~I~~~~~~~~g~~~n~L~DqRD~ll~eLS~~i~I~v~~~~~G~ 160 (463)
T 2d4y_A 81 KTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGT 160 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHSCEEEEEETTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 99999999999989999999999999999999999999999753468999505477999999998756273899737881
Q ss_pred EEEECCCCEEEECCCCC-EEEEEECCCCCCCCCCCEEEECC-CCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHH
Q ss_conf 47870697061034441-25763045666766432167336-55665677666765311101110233136778788765
Q gi|254780524|r 217 MVVYTSDGTTLFETVPR-DINFEKMNSYTVTSESNPIFIDG-VVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 (480)
Q Consensus 217 ~~v~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 294 (480)
+.|...++..+++.... .+...... ... ......+... ............+|+++|++.+++..++.++.+++.++
T Consensus 161 v~V~~g~g~~lv~g~~~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~l~gll~~rd~~l~~~~~~Ld~la 238 (463)
T 2d4y_A 161 YNLTMANGYTLVQGSTARQLAAVPSS-ADP-TRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQLA 238 (463)
T ss_dssp EEEEETTCCEEEETTEECCEEEEECS-SCT-TCEEEEEEETTTEEEECCGGGGCSHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred EEEEECCCEEEEECCCCCEEEEECCC-CCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 68996697044325753114540367-787-7512687315777544643223565434347776310688888888899
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCC---------CCCCCCCCCCCCCC---
Q ss_conf 5431001234557777776543211223456666543322------22223333---------34666210002456---
Q gi|254780524|r 295 RVLIGSFSEKDPIAGNSENVPGLFIADGIKDLDNKLCQGI------SETICVNP---------QYRSNPSFLRDGGS--- 356 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---------~~~~~~~~~~~~~~--- 356 (480)
..++..++..|..+.+..+..+...+.............. ........ .+....+.+.....
T Consensus 239 ~~l~~~~N~~~~~G~d~~g~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (463)
T 2d4y_A 239 LAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKVQATDYKIVFDGTDWQVTRTADNTT 318 (463)
T ss_dssp HHHHHHHHHHHTTSBCTTSCBCCCCEECCCCEEEECTTSSCTTCCCEEEESCGGGCCSSCEEEEECSSSEEEEETTTCCE
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCCC
T ss_conf 99999999986416667787675541568643235666767653034431366445666622563045430331245752
Q ss_pred -----------------------CCCC----------CCCC-------CCCC---------CCCHHHHHHHHHHHCCCCC
Q ss_conf -----------------------6665----------5556-------6654---------4310245676642011112
Q gi|254780524|r 357 -----------------------VSKK----------FLWN-------VKNL---------AGYPDLINHYCDSFNKNFI 387 (480)
Q Consensus 357 -----------------------~~~~----------~~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~ 387 (480)
.... ...+ .... ...........++......
T Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~~~~~gd~~~~~~~~~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~g~gd~~na~~l~~l 398 (463)
T 2d4y_A 319 FTATKDADGKLEIDGLKVTVGTGAQKNDSFLLKPVSNAIVDMNVKVTNEAEIAMASESKLDPDVDTGDSDNRNGQALLDL 398 (463)
T ss_dssp EECEECTTSCEEETTEEEECCSCCCTTEEEEEESSTTTTTTCEECCCCGGGCCCBSSCCC--------CCCHHHHHHHGG
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 22345667643567625773367667861453431225654144227878765304565678777788867999999835
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 333345677652899998777887664211123223456799999998876628888999999999
Q gi|254780524|r 388 FDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISESYSNTVGVNLQEELSFLIK 453 (480)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~~lE~SNVDL~eE~tnLI~ 453 (480)
... ....++.+|.++|..+++.++...+.+....+..+..+..+...+.+.|+|+|+|||+|||+
T Consensus 399 ~~~-~~~~~~~T~~~~y~~~v~~ig~~~~~a~~~~~~~~~~~~~l~~~r~svSGVslDEE~~nLik 463 (463)
T 2d4y_A 399 QNS-NVVGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 463 (463)
T ss_dssp GGS-CCBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 013-56679856999999999999999999999999999999999999984406169999997549