Query gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] Match_columns 480 No_of_seqs 130 out of 1801 Neff 10.7 Searched_HMMs 13730 Date Wed Jun 1 10:31:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780524.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1wlga_ b.152.1.1 (A:) Flagell 97.9 3.8E-10 2.8E-14 76.7 -17.3 83 356-440 211-293 (293) 2 d1pgja1 a.100.1.1 (A:179-478) 22.2 13 0.00094 11.7 1.7 10 449-458 268-277 (300) 3 d2iaza1 a.281.1.2 (A:1-111) Hy 16.0 18 0.0013 10.8 0.5 41 430-476 67-107 (111) 4 d2pgda1 a.100.1.1 (A:177-473) 14.6 19 0.0014 10.6 1.7 21 435-458 252-272 (297) 5 d1x58a1 a.4.1.1 (A:8-56) Hypot 9.3 31 0.0023 9.3 0.1 12 441-452 38-49 (49) 6 d1d9qa_ e.7.1.1 (A:) Fructose- 8.0 37 0.0027 8.9 -0.1 11 408-418 292-302 (340) 7 d1q8ha_ g.32.1.1 (A:) Osteocal 7.9 39 0.0028 8.7 1.6 14 446-459 18-31 (37) 8 d2c5ra1 a.251.1.1 (A:66-129) E 7.6 41 0.003 8.6 2.2 20 440-459 31-50 (64) 9 d2duca1 b.47.1.4 (A:2-301) Cor 6.9 47 0.0034 8.2 0.5 17 437-453 253-269 (300) 10 d1fiua_ c.52.1.10 (A:) Restric 6.3 52 0.0038 7.9 1.5 11 470-480 263-273 (286) No 1 >d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]} Probab=97.86 E-value=3.8e-10 Score=76.67 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=65.1 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 66665555666544310245676642011112333345677652899998777887664211123223456799999998 Q gi|254780524|r 356 SVSKKFLWNVKNLAGYPDLINHYCDSFNKNFIFDPVAGINTNVTLLEYARNSIGWLEKNRSDSHDLHMKSQVVFNHISES 435 (480) Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~sg~~~~~~~~~~~~g~i~~~ 435 (480) ............+..++.....+.++........+++.+.+...|.....+. |.++..||.+.+++|+++++|+|.++ T Consensus 211 dG~~~G~l~~~~i~~dG~i~~~ysNG~~~~lgqiala~F~Np~gL~~~g~n~--f~~t~~SG~~~~g~~g~~g~G~i~~g 288 (293) T d1wlga_ 211 NGYKPGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNV--WAATQASGVALLGTAGSGNFGKLTNG 288 (293) T ss_dssp CCBCCBCEEEEEECTTCEEEEEETTSCEEEEEEECEEECSCGGGSEECSTTC--EECCTTTCCCEEECTTBTTBCCCSSC T ss_pred CCCCCEEEEEEEECCCEEEEEEECCCCEEEEEEEEEEEECCHHHHHHCCCCE--EECCCCCCCCEECCCCCCCCEEEECC T ss_conf 8843112321066587589999769967898899999735968732125970--87600168855568998882238426 Q ss_pred HHHHH Q ss_conf 87662 Q gi|254780524|r 436 YSNTV 440 (480) Q Consensus 436 ~lE~S 440 (480) +||+| T Consensus 289 ~LE~S 293 (293) T d1wlga_ 289 ALEAS 293 (293) T ss_dssp EEEEC T ss_pred CEECC T ss_conf 13169 No 2 >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Probab=22.19 E-value=13 Score=11.70 Aligned_cols=10 Identities=10% Similarity=0.315 Sum_probs=8.5 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254780524|r 449 SFLIKVEQSY 458 (480) Q Consensus 449 tnLI~~QraY 458 (480) .+||++||.| T Consensus 268 anLIQAqRD~ 277 (300) T d1pgja1 268 GQLVSLQRDV 277 (300) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 6799999862 No 3 >d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372 {Streptococcus pneumoniae [TaxId: 1313]} Probab=16.01 E-value=18 Score=10.84 Aligned_cols=41 Identities=10% Similarity=-0.004 Sum_probs=21.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999887662888899999999999999999999999999999998 Q gi|254780524|r 430 NHISESYSNTVGVNLQEELSFLIKVEQSYNISNKLIMFTDKMLQTLL 476 (480) Q Consensus 430 g~i~~~~lE~SNVDL~eE~tnLI~~QraYqANakvItT~Demlq~Li 476 (480) ..+..-..++ +..+....++.+|+.++ ++|..++.++-+-| T Consensus 67 ~~l~~l~~~i---~~n~~i~~~~~Ae~~l~---~ll~~Vn~iI~~~i 107 (111) T d2iaza1 67 AKMEGFGKQI---QGNSLLSEFFTKQQQLA---IYLSDIEKIVFEPV 107 (111) T ss_dssp HHHHHHHHHH---HTCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH T ss_pred HHHHHHHHHH---HCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH T ss_conf 9999999998---66899999999999999---99999999998877 No 4 >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Probab=14.57 E-value=19 Score=10.61 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=13.1 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 887662888899999999999999 Q gi|254780524|r 435 SYSNTVGVNLQEELSFLIKVEQSY 458 (480) Q Consensus 435 ~~lE~SNVDL~eE~tnLI~~QraY 458 (480) -......-++ -.+||++||.| T Consensus 252 y~~~~~~~~l---p~~lIQAqRD~ 272 (297) T d2pgda1 252 FYDGYRHAML---PANLIQAQRDY 272 (297) T ss_dssp HHHHHHCSSC---THHHHHHHHHH T ss_pred HHHHHCCCCC---HHHHHHHHHHH T ss_conf 9998616886---66899999877 No 5 >d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Probab=9.34 E-value=31 Score=9.31 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=4.8 Q ss_pred CCCHHHHHHHHH Q ss_conf 888899999999 Q gi|254780524|r 441 GVNLQEELSFLI 452 (480) Q Consensus 441 NVDL~eE~tnLI 452 (480) ||||+..+-.|| T Consensus 38 ~vdLA~Ky~~l~ 49 (49) T d1x58a1 38 AVDLAHKYHRLI 49 (49) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHC T ss_conf 667999887409 No 6 >d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum sativum) [TaxId: 3888]} Probab=8.04 E-value=37 Score=8.89 Aligned_cols=11 Identities=0% Similarity=0.284 Sum_probs=3.9 Q ss_pred HHHHHHHHHHH Q ss_conf 78876642111 Q gi|254780524|r 408 IGWLEKNRSDS 418 (480) Q Consensus 408 ~~~~~t~~sg~ 418 (480) .+++...+.|. T Consensus 292 ~afivE~AGG~ 302 (340) T d1d9qa_ 292 MSFIVEQAGGK 302 (340) T ss_dssp HHHHHHHTTCE T ss_pred HHHHHHHCCCC T ss_conf 99999963984 No 7 >d1q8ha_ g.32.1.1 (A:) Osteocalcin {Pig (Sus scrofa) [TaxId: 9823]} Probab=7.90 E-value=39 Score=8.71 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254780524|r 446 EELSFLIKVEQSYN 459 (480) Q Consensus 446 eE~tnLI~~QraYq 459 (480) .|+.+-|-+|.+|+ T Consensus 18 delad~igfqeayr 31 (37) T d1q8ha_ 18 DELADHIGFQEAYR 31 (37) T ss_dssp HHHHHHHCHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99998754899999 No 8 >d2c5ra1 a.251.1.1 (A:66-129) Early protein gp16.7 {Bacteriophage phi-29 [TaxId: 10756]} Probab=7.55 E-value=41 Score=8.55 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=14.6 Q ss_pred HCCCHHHHHHHHHHHHHHHH Q ss_conf 28888999999999999999 Q gi|254780524|r 440 VGVNLQEELSFLIKVEQSYN 459 (480) Q Consensus 440 SNVDL~eE~tnLI~~QraYq 459 (480) -+....+|..+-|..||+|= T Consensus 31 ~~L~te~EVmnYiEnqR~~W 50 (64) T d2c5ra1 31 QRLQSEQEVLNYIETQRTYW 50 (64) T ss_dssp TCCCSHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 63301999999999657677 No 9 >d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {SARS coronavirus [TaxId: 227859]} Probab=6.88 E-value=47 Score=8.22 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=9.1 Q ss_pred HHHHCCCHHHHHHHHHH Q ss_conf 76628888999999999 Q gi|254780524|r 437 SNTVGVNLQEELSFLIK 453 (480) Q Consensus 437 lE~SNVDL~eE~tnLI~ 453 (480) -...+||+.+=+.-+++ T Consensus 253 aa~TGVsVe~lL~aI~~ 269 (300) T d2duca1 253 SAQTGIAVLDMCAALKE 269 (300) T ss_dssp HHHHTCCHHHHHHHHHH T ss_pred HHHHCCCHHHHHHHHHH T ss_conf 87748789999999999 No 10 >d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria gonorrhoeae [TaxId: 485]} Probab=6.31 E-value=52 Score=7.93 Aligned_cols=11 Identities=9% Similarity=0.489 Sum_probs=0.0 Q ss_pred HHHHHHHHHHC Q ss_conf 99999987409 Q gi|254780524|r 470 KMLQTLLEGVK 480 (480) Q Consensus 470 emlq~Lin~~R 480 (480) +||+++|+.|| T Consensus 263 ~ml~~mi~GkR 273 (286) T d1fiua_ 263 DLFYIMVNGKR 273 (286) T ss_dssp HHHHHHHHTTS T ss_pred HHHHHHHCCCC T ss_conf 99999866641 Done!